Query 020194
Match_columns 329
No_of_seqs 268 out of 1987
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:47:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05007 PII uridylyl-transfer 100.0 2.7E-32 5.8E-37 285.4 26.2 186 108-324 693-880 (884)
2 PRK01759 glnD PII uridylyl-tra 100.0 1.9E-32 4.2E-37 285.5 24.9 184 108-323 669-854 (854)
3 TIGR01693 UTase_glnD [Protein- 100.0 4.1E-29 8.9E-34 261.9 25.3 184 111-322 663-849 (850)
4 PRK00275 glnD PII uridylyl-tra 100.0 1.4E-28 3.1E-33 257.5 25.5 186 114-327 702-890 (895)
5 PRK04374 PII uridylyl-transfer 100.0 4.6E-28 9.9E-33 252.2 25.1 181 111-323 685-867 (869)
6 PRK01759 glnD PII uridylyl-tra 100.0 1E-27 2.3E-32 250.1 25.5 176 11-188 661-853 (854)
7 PRK05092 PII uridylyl-transfer 100.0 2.9E-27 6.2E-32 249.6 27.2 191 110-326 726-918 (931)
8 PRK05007 PII uridylyl-transfer 100.0 2.8E-27 6.2E-32 247.6 26.8 176 13-190 687-880 (884)
9 COG2844 GlnD UTP:GlnB (protein 100.0 1.1E-27 2.4E-32 238.4 21.7 184 111-325 679-864 (867)
10 PRK00275 glnD PII uridylyl-tra 100.0 7.7E-27 1.7E-31 244.5 27.8 178 13-191 687-888 (895)
11 PRK04374 PII uridylyl-transfer 100.0 2.2E-26 4.8E-31 239.6 25.9 175 13-189 675-867 (869)
12 PRK03381 PII uridylyl-transfer 100.0 1.3E-26 2.9E-31 239.6 23.5 178 110-319 594-773 (774)
13 PRK03059 PII uridylyl-transfer 100.0 2.3E-26 5E-31 239.9 25.3 182 110-323 672-855 (856)
14 PRK03059 PII uridylyl-transfer 99.9 2E-25 4.4E-30 232.8 25.8 173 12-189 663-855 (856)
15 PRK03381 PII uridylyl-transfer 99.9 2.3E-25 5.1E-30 230.4 24.3 168 13-184 586-772 (774)
16 PRK05092 PII uridylyl-transfer 99.9 2.2E-24 4.8E-29 227.7 26.8 178 13-191 718-917 (931)
17 TIGR01693 UTase_glnD [Protein- 99.9 2E-24 4.3E-29 226.6 25.2 175 12-188 653-849 (850)
18 cd04897 ACT_ACR_3 ACT domain-c 99.9 6E-25 1.3E-29 160.9 11.2 75 251-325 1-75 (75)
19 COG2844 GlnD UTP:GlnB (protein 99.9 9.6E-24 2.1E-28 210.4 22.3 175 12-189 669-862 (867)
20 cd04895 ACT_ACR_1 ACT domain-c 99.9 3.6E-23 7.9E-28 150.4 10.1 70 251-320 1-70 (72)
21 cd04896 ACT_ACR-like_3 ACT dom 99.9 6.4E-23 1.4E-27 150.2 10.3 73 252-325 1-75 (75)
22 cd04897 ACT_ACR_3 ACT domain-c 99.8 9.5E-18 2.1E-22 122.9 11.2 73 116-189 1-73 (75)
23 cd04895 ACT_ACR_1 ACT domain-c 99.7 2.6E-17 5.6E-22 119.7 10.5 69 116-185 1-69 (72)
24 cd04925 ACT_ACR_2 ACT domain-c 99.7 1.6E-16 3.4E-21 117.3 10.5 72 252-323 1-73 (74)
25 cd04896 ACT_ACR-like_3 ACT dom 99.7 3E-16 6.5E-21 115.0 10.3 71 117-189 1-73 (75)
26 cd04927 ACT_ACR-like_2 Second 99.7 5.4E-16 1.2E-20 115.0 11.0 71 253-324 2-73 (76)
27 cd04900 ACT_UUR-like_1 ACT dom 99.7 7.8E-16 1.7E-20 113.3 10.3 71 252-322 2-73 (73)
28 cd04925 ACT_ACR_2 ACT domain-c 99.7 1.5E-15 3.2E-20 112.1 11.5 73 117-190 1-74 (74)
29 PRK11589 gcvR glycine cleavage 99.6 9.4E-15 2E-19 126.6 16.2 138 113-298 5-144 (190)
30 PRK11589 gcvR glycine cleavage 99.6 1.2E-14 2.6E-19 125.9 15.1 155 24-193 5-170 (190)
31 cd04900 ACT_UUR-like_1 ACT dom 99.6 5.6E-15 1.2E-19 108.7 10.9 71 117-188 2-73 (73)
32 cd04927 ACT_ACR-like_2 Second 99.6 1.6E-14 3.6E-19 107.0 11.1 71 118-190 2-73 (76)
33 cd04928 ACT_TyrKc Uncharacteri 99.6 1.7E-14 3.7E-19 103.6 9.9 65 28-94 2-67 (68)
34 PRK00227 glnD PII uridylyl-tra 99.5 1E-12 2.2E-17 133.9 18.7 144 117-323 547-691 (693)
35 COG2716 GcvR Glycine cleavage 99.4 1.9E-12 4.1E-17 107.6 10.9 160 113-322 2-163 (176)
36 cd04926 ACT_ACR_4 C-terminal 99.4 2.2E-12 4.8E-17 94.6 10.2 67 252-319 2-68 (72)
37 cd04899 ACT_ACR-UUR-like_2 C-t 99.4 3.4E-12 7.3E-17 92.7 10.1 70 252-322 1-70 (70)
38 cd04926 ACT_ACR_4 C-terminal 99.4 9.9E-12 2.2E-16 91.1 10.4 68 27-95 1-68 (72)
39 PRK00227 glnD PII uridylyl-tra 99.3 3.1E-11 6.7E-16 123.1 15.7 144 28-190 547-692 (693)
40 cd04928 ACT_TyrKc Uncharacteri 99.3 1.8E-11 3.9E-16 87.9 9.9 65 117-188 2-67 (68)
41 COG2716 GcvR Glycine cleavage 99.3 1.5E-11 3.2E-16 102.4 9.5 158 25-193 3-167 (176)
42 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 7.4E-11 1.6E-15 85.6 10.4 70 117-188 1-70 (70)
43 cd04873 ACT_UUR-ACR-like ACT d 99.1 1.2E-09 2.6E-14 78.9 10.1 69 252-321 1-69 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 99.0 9.5E-09 2.1E-13 74.1 10.4 69 117-187 1-69 (70)
45 PF13740 ACT_6: ACT domain; PD 98.8 3.5E-08 7.7E-13 73.0 10.2 64 116-187 2-65 (76)
46 COG4747 ACT domain-containing 98.8 2.8E-07 6E-12 72.1 12.8 112 28-162 4-116 (142)
47 PF13740 ACT_6: ACT domain; PD 98.6 5.6E-07 1.2E-11 66.5 10.7 67 251-324 2-68 (76)
48 PF01842 ACT: ACT domain; Int 98.6 5.2E-07 1.1E-11 64.1 9.8 62 252-321 1-64 (66)
49 cd04893 ACT_GcvR_1 ACT domains 98.6 4.2E-07 9.2E-12 67.3 8.9 68 117-193 2-69 (77)
50 cd04894 ACT_ACR-like_1 ACT dom 98.5 4.1E-07 8.9E-12 62.8 7.0 59 28-86 1-59 (69)
51 cd04870 ACT_PSP_1 CT domains f 98.5 4.7E-07 1E-11 66.7 7.9 63 118-187 1-63 (75)
52 PF01842 ACT: ACT domain; Int 98.5 2.1E-06 4.6E-11 60.8 9.7 61 117-186 1-63 (66)
53 cd04893 ACT_GcvR_1 ACT domains 98.5 1.5E-06 3.2E-11 64.4 8.9 48 27-74 1-48 (77)
54 cd04870 ACT_PSP_1 CT domains f 98.4 2E-06 4.4E-11 63.3 7.9 62 29-92 1-62 (75)
55 cd04872 ACT_1ZPV ACT domain pr 98.2 5.4E-06 1.2E-10 63.0 7.4 70 117-193 2-71 (88)
56 cd04872 ACT_1ZPV ACT domain pr 98.1 1E-05 2.2E-10 61.4 7.2 49 28-76 2-50 (88)
57 cd04869 ACT_GcvR_2 ACT domains 98.1 2.8E-05 6.2E-10 57.7 9.0 67 118-192 1-73 (81)
58 PRK00194 hypothetical protein; 98.1 1.7E-05 3.7E-10 60.4 7.8 71 116-193 3-73 (90)
59 cd04869 ACT_GcvR_2 ACT domains 98.1 2.7E-05 5.9E-10 57.8 8.7 62 29-92 1-68 (81)
60 PRK00194 hypothetical protein; 98.1 1.7E-05 3.7E-10 60.4 7.6 50 27-76 3-52 (90)
61 cd04875 ACT_F4HF-DF N-terminal 98.1 2.4E-05 5.1E-10 57.3 7.9 63 118-186 1-65 (74)
62 cd04875 ACT_F4HF-DF N-terminal 98.0 5.4E-05 1.2E-09 55.4 8.8 34 29-62 1-34 (74)
63 PRK13010 purU formyltetrahydro 98.0 0.00022 4.9E-09 66.1 14.7 119 26-151 8-128 (289)
64 TIGR00655 PurU formyltetrahydr 98.0 0.00034 7.3E-09 64.6 15.4 116 29-151 2-119 (280)
65 cd04894 ACT_ACR-like_1 ACT dom 97.9 4.1E-05 8.9E-10 53.1 6.3 67 117-187 1-67 (69)
66 PF13291 ACT_4: ACT domain; PD 97.9 0.00016 3.5E-09 53.6 10.1 64 250-319 5-70 (80)
67 PF13291 ACT_4: ACT domain; PD 97.7 0.0003 6.4E-09 52.2 9.1 63 116-185 6-70 (80)
68 PRK06027 purU formyltetrahydro 97.7 0.00012 2.6E-09 67.9 8.4 72 115-193 5-78 (286)
69 COG3830 ACT domain-containing 97.7 4.9E-05 1.1E-09 57.0 4.4 67 116-188 3-69 (90)
70 PRK13011 formyltetrahydrofolat 97.7 0.0019 4E-08 59.9 15.6 116 27-151 7-124 (286)
71 PRK06027 purU formyltetrahydro 97.7 0.0018 3.9E-08 60.1 15.4 48 26-73 5-54 (286)
72 COG4747 ACT domain-containing 97.6 0.004 8.6E-08 49.1 13.9 111 118-297 5-116 (142)
73 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00061 1.3E-08 49.5 9.1 61 254-320 2-63 (74)
74 TIGR00655 PurU formyltetrahydr 97.6 0.00034 7.3E-09 64.6 9.1 70 118-193 2-73 (280)
75 PRK13010 purU formyltetrahydro 97.6 0.00042 9E-09 64.3 9.3 67 115-186 8-76 (289)
76 cd04877 ACT_TyrR N-terminal AC 97.5 0.00043 9.4E-09 50.6 7.2 58 253-319 2-59 (74)
77 cd04887 ACT_MalLac-Enz ACT_Mal 97.5 0.0013 2.9E-08 47.6 9.8 61 119-186 2-63 (74)
78 PRK07431 aspartate kinase; Pro 97.5 0.061 1.3E-06 55.0 25.1 216 25-322 346-580 (587)
79 COG3830 ACT domain-containing 97.5 0.00015 3.3E-09 54.4 4.5 47 27-73 3-49 (90)
80 PRK13011 formyltetrahydrofolat 97.5 0.004 8.7E-08 57.7 14.9 71 115-193 6-78 (286)
81 PRK07431 aspartate kinase; Pro 97.4 0.053 1.2E-06 55.5 22.5 191 34-284 278-473 (587)
82 COG0788 PurU Formyltetrahydrof 97.3 0.0012 2.6E-08 59.3 8.5 66 26-92 6-73 (287)
83 cd04886 ACT_ThrD-II-like C-ter 97.2 0.0039 8.5E-08 44.3 9.4 61 119-186 1-66 (73)
84 PRK06737 acetolactate synthase 97.2 0.0023 5E-08 47.0 7.8 63 117-186 3-66 (76)
85 cd04908 ACT_Bt0572_1 N-termina 97.2 0.002 4.4E-08 45.8 7.4 44 252-297 2-45 (66)
86 cd04886 ACT_ThrD-II-like C-ter 97.2 0.0035 7.5E-08 44.6 8.8 34 254-287 1-34 (73)
87 cd04877 ACT_TyrR N-terminal AC 97.2 0.0025 5.4E-08 46.5 7.9 35 118-152 2-36 (74)
88 cd04889 ACT_PDH-BS-like C-term 97.2 0.0015 3.3E-08 44.8 6.3 46 119-164 1-47 (56)
89 CHL00100 ilvH acetohydroxyacid 97.2 0.0032 6.8E-08 53.9 9.5 35 252-286 3-37 (174)
90 cd04909 ACT_PDH-BS C-terminal 97.2 0.0029 6.2E-08 45.2 7.9 47 252-298 2-50 (69)
91 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.2 0.0028 6.1E-08 45.9 8.0 61 253-319 2-64 (79)
92 cd04878 ACT_AHAS N-terminal AC 97.1 0.0046 1E-07 43.8 8.8 61 253-319 2-63 (72)
93 PRK08178 acetolactate synthase 97.1 0.0037 8E-08 47.9 8.5 64 115-186 7-71 (96)
94 PRK13562 acetolactate synthase 97.1 0.0029 6.2E-08 47.3 7.5 63 117-186 3-67 (84)
95 cd04908 ACT_Bt0572_1 N-termina 97.1 0.0023 5.1E-08 45.5 6.9 45 117-163 2-46 (66)
96 cd04889 ACT_PDH-BS-like C-term 97.1 0.0015 3.3E-08 44.7 5.7 46 254-299 1-47 (56)
97 cd04909 ACT_PDH-BS C-terminal 97.1 0.0065 1.4E-07 43.4 9.1 36 117-152 2-37 (69)
98 CHL00100 ilvH acetohydroxyacid 97.1 0.0045 9.8E-08 53.0 9.5 63 117-187 3-67 (174)
99 cd04888 ACT_PheB-BS C-terminal 97.1 0.0042 9.1E-08 45.1 8.0 61 253-319 2-64 (76)
100 PRK06737 acetolactate synthase 97.0 0.0055 1.2E-07 45.0 8.1 63 252-320 3-66 (76)
101 COG0788 PurU Formyltetrahydrof 97.0 0.0017 3.8E-08 58.3 6.5 69 115-190 6-76 (287)
102 cd04905 ACT_CM-PDT C-terminal 97.0 0.0063 1.4E-07 45.0 8.5 65 252-319 2-67 (80)
103 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.0 0.0072 1.6E-07 43.6 8.6 35 118-152 2-36 (79)
104 cd04888 ACT_PheB-BS C-terminal 97.0 0.008 1.7E-07 43.6 8.8 62 118-186 2-65 (76)
105 PRK08577 hypothetical protein; 96.9 0.0097 2.1E-07 48.9 10.1 48 241-288 43-93 (136)
106 cd04878 ACT_AHAS N-terminal AC 96.9 0.012 2.7E-07 41.5 9.1 35 118-152 2-36 (72)
107 TIGR00119 acolac_sm acetolacta 96.9 0.0096 2.1E-07 50.1 9.4 62 117-186 2-65 (157)
108 cd04879 ACT_3PGDH-like ACT_3PG 96.8 0.0035 7.5E-08 44.3 5.9 44 254-297 2-47 (71)
109 PRK11152 ilvM acetolactate syn 96.8 0.0072 1.6E-07 44.5 7.4 61 117-186 4-66 (76)
110 cd04879 ACT_3PGDH-like ACT_3PG 96.8 0.009 2E-07 42.1 7.9 44 30-73 2-47 (71)
111 PRK11895 ilvH acetolactate syn 96.8 0.013 2.7E-07 49.6 9.7 62 117-186 3-66 (161)
112 cd04903 ACT_LSD C-terminal ACT 96.8 0.0098 2.1E-07 42.0 7.7 33 254-286 2-34 (71)
113 cd04882 ACT_Bt0572_2 C-termina 96.7 0.0066 1.4E-07 42.5 6.4 36 253-288 1-36 (65)
114 PRK13562 acetolactate synthase 96.7 0.011 2.3E-07 44.2 7.6 35 28-62 3-37 (84)
115 cd04874 ACT_Af1403 N-terminal 96.6 0.013 2.7E-07 41.6 7.6 35 253-287 2-36 (72)
116 PRK11152 ilvM acetolactate syn 96.6 0.015 3.2E-07 42.8 7.9 61 252-320 4-66 (76)
117 PRK08178 acetolactate synthase 96.6 0.0091 2E-07 45.7 6.9 37 25-61 6-42 (96)
118 cd04874 ACT_Af1403 N-terminal 96.6 0.017 3.8E-07 40.9 8.2 45 29-73 2-47 (72)
119 TIGR00119 acolac_sm acetolacta 96.6 0.017 3.6E-07 48.7 9.1 62 252-320 2-65 (157)
120 cd04898 ACT_ACR-like_4 ACT dom 96.6 0.0047 1E-07 44.7 4.6 72 118-190 2-76 (77)
121 PRK11895 ilvH acetolactate syn 96.5 0.018 3.8E-07 48.8 8.8 62 252-320 3-66 (161)
122 PRK08577 hypothetical protein; 96.5 0.039 8.5E-07 45.3 10.7 59 16-74 43-105 (136)
123 cd04903 ACT_LSD C-terminal ACT 96.5 0.023 5E-07 40.0 8.2 44 30-73 2-47 (71)
124 cd04898 ACT_ACR-like_4 ACT dom 96.5 0.0063 1.4E-07 44.0 5.0 68 254-322 3-74 (77)
125 cd04901 ACT_3PGDH C-terminal A 96.5 0.0035 7.7E-08 44.6 3.6 44 30-73 2-45 (69)
126 cd04883 ACT_AcuB C-terminal AC 96.4 0.039 8.5E-07 39.5 8.8 46 28-73 2-49 (72)
127 cd04931 ACT_PAH ACT domain of 96.3 0.04 8.6E-07 42.0 8.9 74 249-326 12-86 (90)
128 cd04876 ACT_RelA-SpoT ACT dom 96.3 0.042 9.1E-07 37.7 8.5 44 254-297 1-45 (71)
129 cd04902 ACT_3PGDH-xct C-termin 96.3 0.022 4.8E-07 40.8 7.1 44 30-73 2-47 (73)
130 cd04876 ACT_RelA-SpoT ACT dom 96.3 0.051 1.1E-06 37.3 8.8 45 119-163 1-46 (71)
131 cd04905 ACT_CM-PDT C-terminal 96.2 0.053 1.1E-06 40.0 9.1 48 117-164 2-50 (80)
132 cd04901 ACT_3PGDH C-terminal A 96.2 0.0052 1.1E-07 43.7 3.3 44 254-297 2-45 (69)
133 cd04882 ACT_Bt0572_2 C-termina 96.2 0.015 3.3E-07 40.6 5.7 36 118-153 1-36 (65)
134 cd04884 ACT_CBS C-terminal ACT 96.2 0.033 7.1E-07 40.2 7.4 34 119-152 2-35 (72)
135 PRK04435 hypothetical protein; 96.1 0.061 1.3E-06 44.8 9.9 58 18-75 60-118 (147)
136 TIGR00656 asp_kin_monofn aspar 96.1 0.25 5.4E-06 48.0 15.7 106 26-146 259-370 (401)
137 PRK04435 hypothetical protein; 96.0 0.075 1.6E-06 44.3 9.8 72 243-319 60-133 (147)
138 cd04884 ACT_CBS C-terminal ACT 96.0 0.04 8.6E-07 39.7 7.2 34 254-287 2-35 (72)
139 cd04902 ACT_3PGDH-xct C-termin 96.0 0.021 4.6E-07 40.8 5.8 45 119-163 2-48 (73)
140 cd02116 ACT ACT domains are co 96.0 0.026 5.7E-07 36.8 5.8 35 254-288 1-35 (60)
141 PRK06635 aspartate kinase; Rev 95.9 0.17 3.7E-06 49.2 13.3 106 29-147 264-374 (404)
142 cd04871 ACT_PSP_2 ACT domains 95.7 0.0076 1.6E-07 45.3 2.4 67 118-193 1-77 (84)
143 PRK07334 threonine dehydratase 95.7 0.081 1.8E-06 51.5 10.2 65 250-320 325-394 (403)
144 cd02116 ACT ACT domains are co 95.7 0.05 1.1E-06 35.4 6.3 35 119-153 1-35 (60)
145 PRK07334 threonine dehydratase 95.7 0.23 5E-06 48.4 13.3 65 115-186 325-394 (403)
146 PF13710 ACT_5: ACT domain; PD 95.7 0.038 8.2E-07 39.1 5.8 54 125-186 1-56 (63)
147 cd04883 ACT_AcuB C-terminal AC 95.6 0.073 1.6E-06 38.0 7.2 47 117-163 2-50 (72)
148 cd04880 ACT_AAAH-PDT-like ACT 95.4 0.2 4.4E-06 36.2 9.2 64 119-186 2-66 (75)
149 TIGR00656 asp_kin_monofn aspar 95.4 1.5 3.2E-05 42.6 17.8 106 115-281 259-370 (401)
150 PRK08210 aspartate kinase I; R 95.4 0.84 1.8E-05 44.4 16.0 99 26-146 270-372 (403)
151 PF13710 ACT_5: ACT domain; PD 95.3 0.055 1.2E-06 38.2 5.6 38 260-297 1-40 (63)
152 cd04904 ACT_AAAH ACT domain of 95.1 0.12 2.5E-06 37.7 7.0 48 254-302 3-51 (74)
153 PRK06291 aspartate kinase; Pro 95.1 1.1 2.3E-05 44.6 16.0 108 26-148 320-433 (465)
154 PRK06635 aspartate kinase; Rev 95.0 0.34 7.5E-06 47.1 12.2 107 118-283 264-375 (404)
155 cd04885 ACT_ThrD-I Tandem C-te 95.0 0.21 4.5E-06 35.6 7.8 60 120-186 2-61 (68)
156 cd04929 ACT_TPH ACT domain of 94.9 0.15 3.3E-06 37.2 7.1 50 254-304 3-53 (74)
157 PRK09034 aspartate kinase; Rev 94.9 0.97 2.1E-05 44.8 14.9 138 26-190 307-450 (454)
158 PRK10872 relA (p)ppGpp synthet 94.9 0.23 5E-06 51.9 10.8 72 242-319 655-730 (743)
159 COG1707 ACT domain-containing 94.8 0.11 2.3E-06 43.7 6.8 40 29-68 4-45 (218)
160 cd04880 ACT_AAAH-PDT-like ACT 94.8 0.25 5.4E-06 35.8 8.0 62 256-320 4-66 (75)
161 cd04931 ACT_PAH ACT domain of 94.7 0.41 8.9E-06 36.4 9.3 69 115-188 13-82 (90)
162 cd04871 ACT_PSP_2 ACT domains 94.4 0.021 4.5E-07 42.9 1.4 62 253-321 1-72 (84)
163 PRK11092 bifunctional (p)ppGpp 94.2 0.36 7.9E-06 50.3 10.6 72 242-319 615-689 (702)
164 PRK06291 aspartate kinase; Pro 94.1 4.3 9.2E-05 40.4 17.6 109 114-283 319-433 (465)
165 TIGR00691 spoT_relA (p)ppGpp s 93.9 0.51 1.1E-05 49.1 10.9 72 242-319 599-673 (683)
166 PRK10872 relA (p)ppGpp synthet 93.6 0.49 1.1E-05 49.5 10.2 65 115-186 665-731 (743)
167 PRK11092 bifunctional (p)ppGpp 93.5 0.44 9.5E-06 49.7 9.6 64 116-186 626-690 (702)
168 cd04904 ACT_AAAH ACT domain of 93.5 0.5 1.1E-05 34.3 7.3 46 119-164 3-49 (74)
169 PRK09436 thrA bifunctional asp 93.5 3.6 7.8E-05 43.9 16.6 114 25-149 313-432 (819)
170 cd04930 ACT_TH ACT domain of t 93.4 0.4 8.6E-06 38.2 7.2 53 251-304 41-94 (115)
171 PF13840 ACT_7: ACT domain ; P 93.4 0.31 6.8E-06 34.5 6.0 46 114-164 4-53 (65)
172 PF13840 ACT_7: ACT domain ; P 93.3 0.31 6.7E-06 34.5 5.9 46 250-300 5-54 (65)
173 PRK11899 prephenate dehydratas 93.1 0.56 1.2E-05 43.4 8.8 53 251-304 194-247 (279)
174 COG0317 SpoT Guanosine polypho 93.1 0.6 1.3E-05 48.3 9.7 72 242-319 616-690 (701)
175 PRK08210 aspartate kinase I; R 93.1 7.2 0.00016 37.9 16.9 112 115-298 270-385 (403)
176 TIGR00657 asp_kinases aspartat 93.0 5.6 0.00012 39.2 16.3 108 26-148 301-413 (441)
177 cd04929 ACT_TPH ACT domain of 93.0 0.73 1.6E-05 33.6 7.6 46 119-164 3-49 (74)
178 cd04885 ACT_ThrD-I Tandem C-te 93.0 0.83 1.8E-05 32.4 7.8 60 255-320 2-61 (68)
179 COG0527 LysC Aspartokinases [A 93.0 7.4 0.00016 38.5 16.9 120 25-164 305-430 (447)
180 PRK09034 aspartate kinase; Rev 92.9 8.1 0.00018 38.3 17.3 122 115-299 307-434 (454)
181 TIGR00719 sda_beta L-serine de 92.9 0.57 1.2E-05 41.3 8.1 52 111-162 143-196 (208)
182 PRK09181 aspartate kinase; Val 92.7 7.1 0.00015 39.0 16.4 104 26-148 328-436 (475)
183 TIGR00691 spoT_relA (p)ppGpp s 92.6 0.7 1.5E-05 48.2 9.6 65 115-186 609-674 (683)
184 PRK09436 thrA bifunctional asp 92.3 7.9 0.00017 41.4 17.2 114 113-283 312-431 (819)
185 cd04906 ACT_ThrD-I_1 First of 92.3 1.5 3.3E-05 32.6 8.7 61 118-186 3-64 (85)
186 PLN02551 aspartokinase 92.1 12 0.00025 37.9 17.2 139 26-189 365-508 (521)
187 COG0077 PheA Prephenate dehydr 91.9 0.86 1.9E-05 42.0 8.2 54 250-304 193-247 (279)
188 COG1707 ACT domain-containing 91.8 0.62 1.4E-05 39.2 6.5 46 118-163 4-51 (218)
189 COG0317 SpoT Guanosine polypho 91.8 0.94 2E-05 46.9 9.1 45 114-158 625-669 (701)
190 PRK11899 prephenate dehydratas 91.8 1.4 3E-05 40.8 9.5 49 116-164 194-243 (279)
191 PRK06382 threonine dehydratase 91.7 1.3 2.9E-05 43.1 9.9 67 248-320 327-398 (406)
192 PRK06382 threonine dehydratase 91.5 3.3 7.1E-05 40.4 12.4 66 114-186 328-398 (406)
193 PRK06349 homoserine dehydrogen 91.4 0.96 2.1E-05 44.4 8.6 51 250-300 347-397 (426)
194 TIGR00719 sda_beta L-serine de 91.2 1.2 2.6E-05 39.2 8.3 47 26-72 147-195 (208)
195 PRK11790 D-3-phosphoglycerate 90.9 0.51 1.1E-05 46.1 6.0 61 26-91 337-397 (409)
196 PRK09084 aspartate kinase III; 90.8 12 0.00027 36.9 15.8 102 26-141 305-412 (448)
197 COG2150 Predicted regulator of 90.8 0.3 6.4E-06 40.9 3.6 43 19-61 87-129 (167)
198 PRK11790 D-3-phosphoglycerate 90.8 0.6 1.3E-05 45.6 6.4 48 250-297 337-384 (409)
199 cd04906 ACT_ThrD-I_1 First of 90.5 3.7 8E-05 30.5 9.2 61 253-320 3-64 (85)
200 PRK08818 prephenate dehydrogen 90.2 0.66 1.4E-05 44.7 6.1 50 250-300 294-344 (370)
201 cd04930 ACT_TH ACT domain of t 90.2 1.7 3.8E-05 34.5 7.5 49 116-164 41-90 (115)
202 KOG2663 Acetolactate synthase, 89.6 0.98 2.1E-05 40.6 6.1 42 115-156 76-117 (309)
203 PRK06545 prephenate dehydrogen 89.1 1.8 3.8E-05 41.5 8.1 50 114-163 288-337 (359)
204 PRK10622 pheA bifunctional cho 89.0 2.1 4.5E-05 41.5 8.5 54 250-304 296-350 (386)
205 COG0077 PheA Prephenate dehydr 88.7 2.7 5.8E-05 38.8 8.5 65 115-186 193-258 (279)
206 TIGR00657 asp_kinases aspartat 88.6 16 0.00035 36.0 14.7 34 250-283 377-413 (441)
207 COG0440 IlvH Acetolactate synt 88.4 1.9 4.1E-05 36.4 6.7 66 116-188 4-70 (163)
208 PLN02551 aspartokinase 88.3 31 0.00067 34.9 17.2 125 114-299 364-493 (521)
209 PRK06545 prephenate dehydrogen 88.2 1.5 3.3E-05 41.9 7.0 49 249-297 288-336 (359)
210 PRK08818 prephenate dehydrogen 87.7 1.5 3.1E-05 42.3 6.5 49 115-164 294-343 (370)
211 cd04922 ACT_AKi-HSDH-ThrA_2 AC 87.5 7.2 0.00016 26.7 8.7 44 118-163 3-49 (66)
212 TIGR01127 ilvA_1Cterm threonin 87.5 13 0.00028 35.7 13.1 65 115-186 304-373 (380)
213 cd04932 ACT_AKiii-LysC-EC_1 AC 87.4 5.7 0.00012 28.9 8.1 44 252-299 2-48 (75)
214 PRK08198 threonine dehydratase 87.3 5.8 0.00012 38.6 10.6 39 113-151 324-362 (404)
215 cd04922 ACT_AKi-HSDH-ThrA_2 AC 87.1 6.2 0.00014 27.1 8.0 46 252-299 2-50 (66)
216 PRK06349 homoserine dehydrogen 87.0 3.4 7.3E-05 40.6 8.8 51 114-164 346-396 (426)
217 cd04937 ACT_AKi-DapG-BS_2 ACT 86.5 8.8 0.00019 26.6 8.4 28 118-145 3-33 (64)
218 PRK10622 pheA bifunctional cho 86.1 4.4 9.4E-05 39.3 8.8 50 115-164 296-346 (386)
219 PRK09466 metL bifunctional asp 86.0 30 0.00065 37.0 15.6 103 26-146 316-424 (810)
220 PRK08961 bifunctional aspartat 85.9 29 0.00062 37.4 15.7 103 26-144 321-429 (861)
221 cd04919 ACT_AK-Hom3_2 ACT doma 85.7 8.3 0.00018 26.5 8.0 46 252-299 2-50 (66)
222 KOG2663 Acetolactate synthase, 85.5 1.3 2.8E-05 39.8 4.4 43 26-68 76-118 (309)
223 COG0440 IlvH Acetolactate synt 85.3 3.6 7.9E-05 34.7 6.8 38 27-64 4-42 (163)
224 PLN02317 arogenate dehydratase 85.0 4.9 0.00011 38.8 8.5 39 251-289 283-321 (382)
225 TIGR01127 ilvA_1Cterm threonin 84.9 8.6 0.00019 37.0 10.4 66 249-320 303-373 (380)
226 cd04935 ACT_AKiii-DAPDC_1 ACT 84.9 11 0.00024 27.3 8.5 56 259-320 12-67 (75)
227 PRK08198 threonine dehydratase 84.6 9 0.00019 37.2 10.4 38 248-285 324-361 (404)
228 cd04919 ACT_AK-Hom3_2 ACT doma 83.9 12 0.00025 25.8 8.7 34 118-151 3-39 (66)
229 cd04937 ACT_AKi-DapG-BS_2 ACT 83.5 10 0.00022 26.2 7.7 43 252-298 2-47 (64)
230 cd04913 ACT_AKii-LysC-BS-like_ 83.3 7.2 0.00016 27.2 7.0 41 123-163 9-50 (75)
231 PRK13581 D-3-phosphoglycerate 82.9 3.2 6.9E-05 42.0 6.6 51 112-162 448-500 (526)
232 PRK08526 threonine dehydratase 82.6 28 0.00061 33.9 12.9 66 114-186 324-394 (403)
233 cd04890 ACT_AK-like_1 ACT doma 81.9 9.6 0.00021 26.0 7.0 38 259-300 11-48 (62)
234 PRK09181 aspartate kinase; Val 81.7 35 0.00075 34.1 13.3 105 115-284 328-437 (475)
235 cd04924 ACT_AK-Arch_2 ACT doma 80.4 16 0.00034 24.9 8.7 44 118-163 3-49 (66)
236 cd04912 ACT_AKiii-LysC-EC-like 80.4 13 0.00028 26.7 7.5 63 252-320 2-67 (75)
237 TIGR02079 THD1 threonine dehyd 80.1 37 0.00081 33.1 12.8 68 113-186 322-390 (409)
238 PRK12483 threonine dehydratase 79.8 59 0.0013 32.9 14.3 146 25-186 343-502 (521)
239 PRK13581 D-3-phosphoglycerate 79.6 5.5 0.00012 40.3 7.0 62 26-92 451-514 (526)
240 cd04924 ACT_AK-Arch_2 ACT doma 79.5 17 0.00036 24.8 8.0 46 252-299 2-50 (66)
241 PRK11898 prephenate dehydratas 79.5 9 0.0002 35.5 7.9 66 251-319 196-263 (283)
242 cd04912 ACT_AKiii-LysC-EC-like 79.2 21 0.00045 25.6 8.5 62 118-186 3-67 (75)
243 TIGR01327 PGDH D-3-phosphoglyc 78.3 4 8.7E-05 41.2 5.6 49 114-162 449-499 (525)
244 COG2150 Predicted regulator of 77.5 4.7 0.0001 33.8 4.7 35 115-149 92-128 (167)
245 cd04891 ACT_AK-LysC-DapG-like_ 77.0 8.4 0.00018 25.5 5.3 42 123-164 8-50 (61)
246 TIGR01327 PGDH D-3-phosphoglyc 76.5 5.9 0.00013 40.0 6.2 61 27-92 451-513 (525)
247 cd04868 ACT_AK-like ACT domain 76.2 4.6 0.0001 26.5 3.8 32 253-284 2-36 (60)
248 PTZ00324 glutamate dehydrogena 76.1 24 0.00051 38.3 10.6 75 5-79 204-286 (1002)
249 PLN02317 arogenate dehydratase 75.8 22 0.00048 34.4 9.5 49 116-164 283-346 (382)
250 COG4492 PheB ACT domain-contai 75.6 16 0.00035 29.7 7.1 49 25-73 70-119 (150)
251 cd04892 ACT_AK-like_2 ACT doma 75.5 21 0.00045 23.7 8.3 32 118-149 2-36 (65)
252 cd04916 ACT_AKiii-YclM-BS_2 AC 75.4 23 0.00049 24.1 8.6 32 118-149 3-37 (66)
253 TIGR01268 Phe4hydrox_tetr phen 75.2 13 0.00028 36.5 7.8 66 251-320 16-82 (436)
254 cd04891 ACT_AK-LysC-DapG-like_ 75.2 12 0.00025 24.8 5.7 41 34-74 8-49 (61)
255 COG4492 PheB ACT domain-contai 75.1 24 0.00053 28.7 8.0 52 113-164 69-121 (150)
256 cd04916 ACT_AKiii-YclM-BS_2 AC 74.8 24 0.00051 24.0 8.0 35 252-286 2-39 (66)
257 PRK10820 DNA-binding transcrip 74.7 3.1 6.8E-05 41.9 3.6 36 253-288 2-37 (520)
258 cd04921 ACT_AKi-HSDH-ThrA-like 73.9 18 0.00038 26.0 6.7 35 252-286 2-39 (80)
259 cd04933 ACT_AK1-AT_1 ACT domai 73.7 24 0.00052 25.9 7.2 39 258-300 11-49 (78)
260 COG3978 Acetolactate synthase 73.6 29 0.00063 25.6 7.3 63 116-187 3-67 (86)
261 PRK11898 prephenate dehydratas 73.6 20 0.00043 33.2 8.4 49 116-164 196-246 (283)
262 COG0527 LysC Aspartokinases [A 73.6 1E+02 0.0022 30.6 16.7 121 114-300 305-431 (447)
263 cd04913 ACT_AKii-LysC-BS-like_ 72.9 9.1 0.0002 26.6 4.9 27 258-284 9-35 (75)
264 cd04932 ACT_AKiii-LysC-EC_1 AC 72.3 34 0.00074 24.7 8.7 43 118-164 3-48 (75)
265 TIGR01270 Trp_5_monoox tryptop 72.3 13 0.00029 36.7 7.1 56 248-304 28-85 (464)
266 PRK08639 threonine dehydratase 72.0 79 0.0017 30.9 12.7 68 113-186 333-401 (420)
267 PRK12483 threonine dehydratase 71.7 73 0.0016 32.3 12.5 157 113-319 342-501 (521)
268 PRK09224 threonine dehydratase 71.0 76 0.0017 31.9 12.5 130 114-285 326-456 (504)
269 TIGR01124 ilvA_2Cterm threonin 70.8 86 0.0019 31.6 12.7 65 114-186 323-387 (499)
270 cd04936 ACT_AKii-LysC-BS-like_ 70.2 29 0.00064 23.1 8.1 30 119-148 3-35 (63)
271 cd04868 ACT_AK-like ACT domain 70.1 17 0.00038 23.5 5.6 32 118-149 2-36 (60)
272 PRK09224 threonine dehydratase 69.8 92 0.002 31.4 12.8 117 26-150 327-456 (504)
273 PF05088 Bac_GDH: Bacterial NA 69.5 50 0.0011 37.8 11.6 82 13-94 473-561 (1528)
274 cd04920 ACT_AKiii-DAPDC_2 ACT 69.0 35 0.00076 23.5 8.0 27 118-144 2-31 (63)
275 TIGR01268 Phe4hydrox_tetr phen 69.0 29 0.00062 34.2 8.6 49 116-164 16-65 (436)
276 PRK08526 threonine dehydratase 68.8 47 0.001 32.4 10.2 67 248-320 323-394 (403)
277 COG3978 Acetolactate synthase 68.7 45 0.00097 24.7 7.8 47 27-73 3-51 (86)
278 cd04892 ACT_AK-like_2 ACT doma 68.5 31 0.00068 22.8 7.8 32 253-284 2-36 (65)
279 cd04923 ACT_AK-LysC-DapG-like_ 68.0 33 0.00071 22.9 8.1 30 119-148 3-35 (63)
280 cd04935 ACT_AKiii-DAPDC_1 ACT 66.6 46 0.00099 24.0 7.7 57 123-186 11-67 (75)
281 PLN02550 threonine dehydratase 66.2 1.7E+02 0.0036 30.3 14.0 114 27-149 417-542 (591)
282 PRK09084 aspartate kinase III; 65.3 1.5E+02 0.0032 29.4 17.7 47 114-164 304-353 (448)
283 cd04918 ACT_AK1-AT_2 ACT domai 64.6 38 0.00081 23.5 6.5 34 29-62 3-38 (65)
284 PRK05925 aspartate kinase; Pro 64.6 1.5E+02 0.0033 29.3 16.6 102 27-146 300-404 (440)
285 TIGR01270 Trp_5_monoox tryptop 64.5 27 0.00059 34.6 7.5 51 114-164 29-81 (464)
286 cd04918 ACT_AK1-AT_2 ACT domai 62.8 48 0.001 22.9 8.5 34 118-151 3-38 (65)
287 cd04920 ACT_AKiii-DAPDC_2 ACT 62.6 48 0.001 22.8 7.1 27 253-279 2-31 (63)
288 cd04923 ACT_AK-LysC-DapG-like_ 60.7 47 0.001 22.1 7.1 30 254-283 3-35 (63)
289 cd04921 ACT_AKi-HSDH-ThrA-like 59.8 60 0.0013 23.1 8.7 33 118-150 3-38 (80)
290 PLN02550 threonine dehydratase 57.5 1.7E+02 0.0038 30.1 12.1 155 115-319 416-571 (591)
291 cd04936 ACT_AKii-LysC-BS-like_ 56.8 55 0.0012 21.7 7.5 42 254-299 3-47 (63)
292 PF05088 Bac_GDH: Bacterial NA 55.6 3.9E+02 0.0083 31.0 21.7 178 15-193 329-570 (1528)
293 PRK10820 DNA-binding transcrip 55.5 20 0.00043 36.2 5.0 35 118-152 2-36 (520)
294 cd04934 ACT_AK-Hom3_1 CT domai 55.3 50 0.0011 23.7 5.9 54 259-320 12-65 (73)
295 COG3283 TyrR Transcriptional r 53.5 28 0.00062 33.5 5.3 36 253-288 2-37 (511)
296 COG3603 Uncharacterized conser 52.1 73 0.0016 25.5 6.6 45 238-287 53-100 (128)
297 TIGR02079 THD1 threonine dehyd 51.1 1.4E+02 0.0031 29.0 10.1 67 248-320 322-390 (409)
298 PF04083 Abhydro_lipase: Parti 49.6 54 0.0012 23.0 5.1 33 45-77 2-34 (63)
299 PF01709 Transcrip_reg: Transc 47.8 63 0.0014 29.0 6.5 105 23-150 88-196 (234)
300 cd04934 ACT_AK-Hom3_1 CT domai 47.7 1E+02 0.0022 22.1 6.9 54 124-186 12-65 (73)
301 cd04933 ACT_AK1-AT_1 ACT domai 46.5 21 0.00046 26.2 2.7 38 123-164 11-48 (78)
302 PRK08841 aspartate kinase; Val 46.5 2.8E+02 0.0062 26.9 19.0 113 39-190 266-378 (392)
303 cd07247 SgaA_N_like N-terminal 44.9 80 0.0017 23.7 6.0 50 250-305 61-110 (114)
304 cd04890 ACT_AK-like_1 ACT doma 44.9 94 0.002 20.8 7.8 37 124-164 11-47 (62)
305 cd04915 ACT_AK-Ectoine_2 ACT d 44.8 1E+02 0.0023 21.3 6.9 46 252-299 3-50 (66)
306 cd04917 ACT_AKiii-LysC-EC_2 AC 44.2 1E+02 0.0022 21.0 8.0 43 252-299 2-48 (64)
307 cd04917 ACT_AKiii-LysC-EC_2 AC 43.8 1E+02 0.0022 20.9 8.3 43 118-164 3-48 (64)
308 cd04914 ACT_AKi-DapG-BS_1 ACT 43.4 45 0.00097 23.4 4.0 30 118-147 3-33 (67)
309 PRK08639 threonine dehydratase 42.8 2.2E+02 0.0047 27.9 10.0 68 248-320 333-401 (420)
310 PLN02828 formyltetrahydrofolat 40.1 3E+02 0.0065 25.3 10.9 103 44-151 1-105 (268)
311 cd04915 ACT_AK-Ectoine_2 ACT d 39.9 1.3E+02 0.0027 20.9 9.3 45 117-163 3-49 (66)
312 PRK00907 hypothetical protein; 39.7 1.7E+02 0.0036 22.3 6.8 49 116-164 17-69 (92)
313 cd07247 SgaA_N_like N-terminal 39.6 1.4E+02 0.003 22.3 6.7 51 25-81 60-110 (114)
314 cd04914 ACT_AKi-DapG-BS_1 ACT 38.2 60 0.0013 22.7 3.9 43 29-75 3-46 (67)
315 PRK00907 hypothetical protein; 37.7 1.5E+02 0.0033 22.5 6.2 64 251-320 17-84 (92)
316 PRK08961 bifunctional aspartat 36.9 5.7E+02 0.012 27.6 17.3 34 114-147 320-356 (861)
317 PRK08841 aspartate kinase; Val 35.9 1.1E+02 0.0025 29.6 6.7 63 25-96 316-378 (392)
318 TIGR01124 ilvA_2Cterm threonin 33.5 3.5E+02 0.0075 27.2 9.9 66 248-320 322-387 (499)
319 PRK09466 metL bifunctional asp 31.9 6.8E+02 0.015 27.0 17.8 104 115-282 316-425 (810)
320 cd07261 Glo_EDI_BRP_like_11 Th 31.5 97 0.0021 23.2 4.6 52 250-305 59-110 (114)
321 cd07261 Glo_EDI_BRP_like_11 Th 29.6 1.4E+02 0.003 22.3 5.2 52 26-81 59-110 (114)
322 TIGR01033 DNA-binding regulato 28.9 4.3E+02 0.0094 23.8 12.1 105 23-150 92-200 (238)
323 COG2061 ACT-domain-containing 27.3 3.8E+02 0.0082 22.6 7.8 48 251-298 5-57 (170)
324 cd04911 ACT_AKiii-YclM-BS_1 AC 27.2 1.5E+02 0.0033 21.6 4.6 58 259-324 12-69 (76)
325 PRK00110 hypothetical protein; 26.4 4.9E+02 0.011 23.6 11.6 104 23-151 92-199 (245)
326 cd07253 Glo_EDI_BRP_like_2 Thi 26.0 1.2E+02 0.0026 22.8 4.2 49 254-305 71-120 (125)
327 PRK00341 hypothetical protein; 25.4 2.2E+02 0.0048 21.5 5.3 60 252-320 18-83 (91)
328 COG3283 TyrR Transcriptional r 24.0 99 0.0022 30.0 3.8 34 118-151 2-35 (511)
329 COG2061 ACT-domain-containing 22.9 1.1E+02 0.0025 25.6 3.5 33 115-147 4-36 (170)
330 PRK12378 hypothetical protein; 21.9 5.9E+02 0.013 22.9 10.4 105 23-150 89-197 (235)
331 PRK14637 hypothetical protein; 21.3 4.8E+02 0.01 21.6 7.9 60 127-190 8-67 (151)
332 cd08359 Glo_EDI_BRP_like_22 Th 20.6 3.7E+02 0.008 20.0 6.2 50 26-81 66-115 (119)
333 cd07245 Glo_EDI_BRP_like_9 Thi 20.6 1.5E+02 0.0032 21.5 3.8 48 251-305 65-112 (114)
334 cd07233 Glyoxalase_I Glyoxalas 20.3 2.8E+02 0.0061 20.6 5.4 48 251-305 71-118 (121)
No 1
>PRK05007 PII uridylyl-transferase; Provisional
Probab=100.00 E-value=2.7e-32 Score=285.36 Aligned_cols=186 Identities=22% Similarity=0.252 Sum_probs=160.0
Q ss_pred eeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 108 v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
+...++.++++|+|+++||||||++|+++|+.+|+||++|+|+|.++ .+.|+|||++ .+|.+++ ++++++|++.|.+
T Consensus 693 i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~~-~~~~~~I~~~L~~ 770 (884)
T PRK05007 693 LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPLS-QDRHQVIRKALEQ 770 (884)
T ss_pred EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCCC-HHHHHHHHHHHHH
Confidence 34467778999999999999999999999999999999999999864 8889999999 5788774 5788999999999
Q ss_pred HHcCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchH
Q 020194 187 VLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLL 265 (329)
Q Consensus 187 ~L~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL 265 (329)
+|.+.... . ... ++.+++. + .+..|++|.|+| .|+.+|+|+|.|.||||||
T Consensus 771 aL~~~~~~---~-~~~----~~~~~~~-------~-------------~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL 822 (884)
T PRK05007 771 ALTQSSPQ---P-PKP----RRLPAKL-------R-------------HFNVPTEVSFLPTHTDRRSYMELIALDQPGLL 822 (884)
T ss_pred HHcCCCCC---c-ccc----ccccccc-------C-------------CCCCCCEEEEccCCCCCeEEEEEEeCCchHHH
Confidence 99875431 0 010 0111111 2 334789999999 9999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 020194 266 FDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER 324 (329)
Q Consensus 266 ~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~ 324 (329)
|+|+++|+++|++|++|||+|+|++|+|+|||++.+|+|++ +++++.|+++|+++|..
T Consensus 823 ~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 823 ARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred HHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999 67889999999999976
No 2
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=100.00 E-value=1.9e-32 Score=285.51 Aligned_cols=184 Identities=16% Similarity=0.207 Sum_probs=158.4
Q ss_pred eeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 108 v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t-~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
+..+++.++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|||++ .+|.++. ++++++|++.|.+
T Consensus 669 i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~~-~~~~~~l~~~L~~ 746 (854)
T PRK01759 669 ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLLE-FDRRRQLEQALTK 746 (854)
T ss_pred EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCCC-HHHHHHHHHHHHH
Confidence 44477789999999999999999999999999999999999998 6789999999999 5788885 5788999999999
Q ss_pred HHcCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchH
Q 020194 187 VLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLL 265 (329)
Q Consensus 187 ~L~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL 265 (329)
+|.+.... .. . .+.+++ .+ .+..||+|.|+| .++.+|+|+|.|+||||||
T Consensus 747 aL~~~~~~------~~--~-~~~~~~-------~~-------------~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL 797 (854)
T PRK01759 747 ALNTNKLK------KL--N-LEENHK-------LQ-------------HFHVKTEVRFLNEEKQEQTEMELFALDRAGLL 797 (854)
T ss_pred HHcCCCCc------ch--h-cccccc-------cc-------------CCCCCCEEEEccCCCCCeEEEEEEeCCchHHH
Confidence 99875431 10 0 000111 12 234789999999 9999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 020194 266 FDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 323 (329)
Q Consensus 266 ~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~ 323 (329)
|+|+++|+++|++|++|||+|+|++|+|+|||++.+|+|+++++ +++|+++|.++|+
T Consensus 798 ~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~-~~~l~~~L~~~l~ 854 (854)
T PRK01759 798 AQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEE-RKALKSRLLSNLS 854 (854)
T ss_pred HHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHH-HHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999865 4999999998874
No 3
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.97 E-value=4.1e-29 Score=261.89 Aligned_cols=184 Identities=27% Similarity=0.398 Sum_probs=157.1
Q ss_pred cCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (329)
Q Consensus 111 ~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t-~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (329)
....+.++|+|+++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|||++ .+|.++.+++++++|++.|.++|.
T Consensus 663 ~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~~~L~ 741 (850)
T TIGR01693 663 TRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLVDVLA 741 (850)
T ss_pred cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHHHHHc
Confidence 34478999999999999999999999999999999999995 5788999999999 578888777789999999999998
Q ss_pred CCCCcccccccCCCCCCcc-ccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHH
Q 020194 190 GYDDFRKAKTSLSPPGIMN-RERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFD 267 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~ 267 (329)
+.... ...+. .++ .+++. + .+.++++|.|+| .++.+|+|+|.|.|||||||+
T Consensus 742 ~~~~~---~~~~~---~~~~~~~~~-------~-------------~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~ 795 (850)
T TIGR01693 742 GLAKD---PDTIS---ARRARRRRL-------Q-------------HFAVPPRVTILNTASRKATIMEVRALDRPGLLAR 795 (850)
T ss_pred CCCcc---ccccc---cccCCcccc-------c-------------CCCCCCeEEEccCCCCCeEEEEEEECCccHHHHH
Confidence 75431 00110 000 11111 1 334789999999 999999999999999999999
Q ss_pred HHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 268 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322 (329)
Q Consensus 268 I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l 322 (329)
|+++|+++|++|++|+|+|+|++++|+|||++..|.|+++ ++++.|+++|.++|
T Consensus 796 i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 796 VGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred HHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998 68899999999886
No 4
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1.4e-28 Score=257.47 Aligned_cols=186 Identities=25% Similarity=0.346 Sum_probs=157.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCC-CHHHHHHHHHHHHHHHcCC
Q 020194 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIK-DPKRLSTIKELLFNVLRGY 191 (329)
Q Consensus 114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~-~~~~~~~l~~~L~~~L~~~ 191 (329)
.+.+.|.|+++||||||++|+++|+.+|+||++|+|+|.+ |.+.|+|+|.+ .+|.++. +++++++|++.|.++|.+.
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 4799999999999999999999999999999999998865 67789999999 5677753 3578999999999999876
Q ss_pred CCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHHHHH
Q 020194 192 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVC 270 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~I~~ 270 (329)
..+ ...+. .+.+++. + .+..+++|.|++ .+..+|+|+|.|.|||||||+|++
T Consensus 781 ~~~---~~~~~----~~~~~~~-------~-------------~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~ 833 (895)
T PRK00275 781 DDY---PTIIQ----RRVPRQL-------K-------------HFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGR 833 (895)
T ss_pred Ccc---chhhh----hhhhhhc-------c-------------CCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHH
Confidence 531 11111 1111111 2 234689999999 899999999999999999999999
Q ss_pred HHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhhcc
Q 020194 271 TLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRAS 327 (329)
Q Consensus 271 ~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~~ 327 (329)
+|+.+|++|++|+|.|.|++|.|+|||++.+|+++.+++++++|+++|.++|..+..
T Consensus 834 ~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~ 890 (895)
T PRK00275 834 IFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNE 890 (895)
T ss_pred HHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999888889999999999966543
No 5
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=4.6e-28 Score=252.24 Aligned_cols=181 Identities=23% Similarity=0.260 Sum_probs=152.5
Q ss_pred cCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (329)
Q Consensus 111 ~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (329)
.+..+.+.|.|+++|+||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.++ .|.+ .+++.++++.|.++|.
T Consensus 685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLA 760 (869)
T ss_pred ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHc
Confidence 556689999999999999999999999999999999999995 5778899999984 5543 3568889999999998
Q ss_pred CCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHHH
Q 020194 190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDI 268 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~I 268 (329)
++... . .+. .++.+++ .+ .+.+||+|.|++ .+..+|+|+|.|.|||||||+|
T Consensus 761 ~~~~~---~-~~~---~~~~~~~-------~~-------------~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~I 813 (869)
T PRK04374 761 GDLQK---V-RPA---RRAVPRQ-------LR-------------HFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADV 813 (869)
T ss_pred CCCCc---c-ccc---cccCccc-------cc-------------CCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHH
Confidence 86431 0 110 0001111 12 335789999999 9999999999999999999999
Q ss_pred HHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 020194 269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 323 (329)
Q Consensus 269 ~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~ 323 (329)
+++|+++|++|++|+|+|.|++|+|+|||++.+|.++.+++ +++|+++|+++|.
T Consensus 814 a~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~-~~~l~~~L~~~l~ 867 (869)
T PRK04374 814 AHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESA-RQALRDALCACLD 867 (869)
T ss_pred HHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHH-HHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988765 4999999999985
No 6
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1e-27 Score=250.11 Aligned_cols=176 Identities=24% Similarity=0.339 Sum_probs=151.0
Q ss_pred hcCCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcH---HH
Q 020194 11 RMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK---EV 86 (329)
Q Consensus 11 ~~~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~---~~ 86 (329)
....|.|.+++..+.++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|.+++|.++.+. ++
T Consensus 661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l 740 (854)
T PRK01759 661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQL 740 (854)
T ss_pred cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999998 8999999999999999987542 35
Q ss_pred HHHHHHHhccccCCCC-------------CcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC
Q 020194 87 IDYIQQRLETDASFAP-------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (329)
Q Consensus 87 ~~~ie~~L~~~~~~~~-------------~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~ 153 (329)
.+.|+++|.+...... ++++.++++.+..+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|
T Consensus 741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g 820 (854)
T PRK01759 741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG 820 (854)
T ss_pred HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence 6667777766532111 112234457788999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 154 DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (329)
Q Consensus 154 ~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (329)
++++|+|||++ .+|.+++++++ ++|+++|.++|
T Consensus 821 erv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 821 EKAEDFFILTN-QQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred ceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHh
Confidence 99999999999 67899987555 99999998876
No 7
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=2.9e-27 Score=249.60 Aligned_cols=191 Identities=28% Similarity=0.446 Sum_probs=160.7
Q ss_pred ecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (329)
Q Consensus 110 ~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (329)
..+..+.+.|+|+++||||||++|+++|+.+|+||++|+|+|. +|.+.|+|+|++ .+|.+..+++++++|++.|.+++
T Consensus 726 ~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~l 804 (931)
T PRK05092 726 PDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDAL 804 (931)
T ss_pred ecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHH
Confidence 3566689999999999999999999999999999999999995 577789999998 56777667789999999999999
Q ss_pred cCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHH
Q 020194 189 RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFD 267 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~ 267 (329)
.+...+ ...+ .++.... ...+ .+..+|+|.|+| .+..+|+|+|.|.|||||||+
T Consensus 805 ~~~~~~---~~~~--------~~r~~~~-~~~~-------------~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~ 859 (931)
T PRK05092 805 SGEVRL---PEAL--------AKRTKPK-KRAR-------------AFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYD 859 (931)
T ss_pred cCCCCC---cccc--------ccccCcc-cccc-------------CCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHH
Confidence 775432 1111 1110000 0002 334789999999 999999999999999999999
Q ss_pred HHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhhc
Q 020194 268 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA 326 (329)
Q Consensus 268 I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~ 326 (329)
|+++|+++|++|++|+|.|.|+++.|+|||++.+|+++.+++.+++|+++|.++|..+.
T Consensus 860 I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~ 918 (931)
T PRK05092 860 LTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGE 918 (931)
T ss_pred HHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999998888999999999996554
No 8
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=2.8e-27 Score=247.64 Aligned_cols=176 Identities=22% Similarity=0.313 Sum_probs=152.1
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcH---HHHH
Q 020194 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK---EVID 88 (329)
Q Consensus 13 ~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~---~~~~ 88 (329)
.+|.|.+++..+.++++|+|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+.+|.++.+. ++.+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~ 766 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRK 766 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999997 7789999999999999987542 3667
Q ss_pred HHHHHhccccCCCC--------------CcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC
Q 020194 89 YIQQRLETDASFAP--------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 154 (329)
Q Consensus 89 ~ie~~L~~~~~~~~--------------~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~ 154 (329)
.|+++|.+.....+ ++++.++++.+..+|+|+|.++||||||++|+++|.++|++|++|+|.|.|+
T Consensus 767 ~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~ge 846 (884)
T PRK05007 767 ALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGE 846 (884)
T ss_pred HHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCc
Confidence 77777766532110 1122344477889999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194 155 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (329)
Q Consensus 155 ~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (329)
+++|+|||++ .+|.+++ +++.+.|+++|..+|..
T Consensus 847 ra~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 847 RVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred eEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 9999999998 5788887 67889999999998854
No 9
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-27 Score=238.41 Aligned_cols=184 Identities=25% Similarity=0.380 Sum_probs=154.9
Q ss_pred cCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (329)
Q Consensus 111 ~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (329)
.+..+.+.|.|+++|+|+||+.+++++...|+||++|+|+|.. |++.|+|+|.+ .+|.++. +.+...++..|.+++.
T Consensus 679 r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~-~~g~~~~-~dr~~~~~~~l~~~l~ 756 (867)
T COG2844 679 RPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE-PDGFPVE-EDRRAALRGELIEALL 756 (867)
T ss_pred cccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEec-CCCCccc-hhHHHHHHHHHHHHHh
Confidence 4556889999999999999999999999999999999999965 66889999999 4688776 6788888888888776
Q ss_pred CCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHHH
Q 020194 190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDI 268 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~I 268 (329)
..... + .. ..+.++++ ++| .++|+|+|.| .+..+|+|||+|.||||||++|
T Consensus 757 s~~~~--~--~~----~~r~~r~~-------~~f-------------~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v 808 (867)
T COG2844 757 SGKAQ--P--PR----RRRIPRKL-------RHF-------------PIPPRVTILPTASNDKTVLEVRALDRPGLLAAL 808 (867)
T ss_pred cCCCC--C--cc----ccccCccc-------cee-------------ccCCceeeccccCCCceEEEEEeCCcccHHHHH
Confidence 53321 0 11 11223333 334 4789999999 8999999999999999999999
Q ss_pred HHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhh
Q 020194 269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR 325 (329)
Q Consensus 269 ~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~ 325 (329)
+++|++++++|++|||+|+|++|+|+|||++..|.+++ ++.++.+.+.|.+++..-
T Consensus 809 ~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~~~ 864 (867)
T COG2844 809 AGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALLPN 864 (867)
T ss_pred HHHHHhcccceeeeeeccccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999996 467889999999888653
No 10
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=7.7e-27 Score=244.46 Aligned_cols=178 Identities=21% Similarity=0.387 Sum_probs=150.4
Q ss_pred CCCEEEEEeCCC---CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCC-cH---
Q 020194 13 NPPRVVIDNNTC---ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIR-DK--- 84 (329)
Q Consensus 13 ~~~~V~v~~~~~---~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~-~~--- 84 (329)
..|.|.+.+... .++++|+|+++|+||||+++|++|+.+|+||++|+|+| .+|+++|+|+|++++|.++. ++
T Consensus 687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~ 766 (895)
T PRK00275 687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI 766 (895)
T ss_pred CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence 467888887765 58999999999999999999999999999999999986 88999999999999999753 22
Q ss_pred -HHHHHHHHHhccccCCCC---------------CcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEE
Q 020194 85 -EVIDYIQQRLETDASFAP---------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE 148 (329)
Q Consensus 85 -~~~~~ie~~L~~~~~~~~---------------~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~ 148 (329)
++.+.|+++|.+...+.. ++.+.+..+++.++|+|+|+++||||||++|+++|+.+|+||++|+
T Consensus 767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak 846 (895)
T PRK00275 767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK 846 (895)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence 356667777766542110 1122234477788999999999999999999999999999999999
Q ss_pred EEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194 149 IWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (329)
Q Consensus 149 i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (329)
|+|.++++.|+|||++ .+|.++.+++++++|+++|.++|.+.
T Consensus 847 I~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 847 IATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred EEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999 57888888789999999999999653
No 11
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.2e-26 Score=239.63 Aligned_cols=175 Identities=23% Similarity=0.301 Sum_probs=145.9
Q ss_pred CCCEEEEEe-CCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcH-HHHHH
Q 020194 13 NPPRVVIDN-NTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK-EVIDY 89 (329)
Q Consensus 13 ~~~~V~v~~-~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~-~~~~~ 89 (329)
..|.|.+.. ....+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|.+...+ ++.+.
T Consensus 675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~ 754 (869)
T PRK04374 675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAA 754 (869)
T ss_pred CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHH
Confidence 356666655 67779999999999999999999999999999999999997 8999999999999988743333 47788
Q ss_pred HHHHhccccCCCC---------------CcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC
Q 020194 90 IQQRLETDASFAP---------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 154 (329)
Q Consensus 90 ie~~L~~~~~~~~---------------~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~ 154 (329)
|+++|.+...+.. ++++.+.++.+.+.|+|+|.+.||||||++|+++|+.+|+||++|+|+|.++
T Consensus 755 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~ 834 (869)
T PRK04374 755 LRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGE 834 (869)
T ss_pred HHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCC
Confidence 8888887532110 0112233467778999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194 155 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (329)
Q Consensus 155 ~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (329)
++.|+|||++ .+|.++.++++ +.|+++|.++|.
T Consensus 835 ~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 835 RAEDQFQITD-EHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred EEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence 9999999998 57887766555 999999988774
No 12
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=1.3e-26 Score=239.64 Aligned_cols=178 Identities=25% Similarity=0.277 Sum_probs=146.5
Q ss_pred ecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194 110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (329)
Q Consensus 110 ~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (329)
..+ .+.+.|+|+|+||||||++||++|+.+|+||++|+|+|.+|.+.|+|+|.+ ..|.+. .++++++.|.++|.
T Consensus 594 ~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~----~~~~l~~~L~~~L~ 667 (774)
T PRK03381 594 PAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPP----DAALLRQDLRRALD 667 (774)
T ss_pred eCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcc----hHHHHHHHHHHHHc
Confidence 355 789999999999999999999999999999999999998889999999998 456542 35889999999998
Q ss_pred CCCCcccccccCCCCCCccccccccc-cccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHH
Q 020194 190 GYDDFRKAKTSLSPPGIMNRERRLHQ-IMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFD 267 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~ 267 (329)
+.... ...+ .++... .+...+ .+..+++|.+++ .+..+|+|+|.|.|||||||+
T Consensus 668 ~~~~~---~~~~--------~~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~ 723 (774)
T PRK03381 668 GDLDV---LARL--------AAREAAAAAVPVR-------------RPAAPPRVLWLDGASPDATVLEVRAADRPGLLAR 723 (774)
T ss_pred CCCch---hhhh--------hcccccccccccc-------------cCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHH
Confidence 85331 0011 011000 000012 334688999999 888999999999999999999
Q ss_pred HHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194 268 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE 319 (329)
Q Consensus 268 I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~ 319 (329)
|+++|+++|++|++|+|+|.|+++.|+|||++.+|.+++++ ++.|+++|+
T Consensus 724 Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 724 LARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred HHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence 99999999999999999999999999999999999999975 788888875
No 13
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.3e-26 Score=239.88 Aligned_cols=182 Identities=19% Similarity=0.282 Sum_probs=150.4
Q ss_pred ecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (329)
Q Consensus 110 ~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (329)
..+..+.+.|+|+++||||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.++ +|. ..+++++++|++.|.++|
T Consensus 672 ~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~~~l 749 (856)
T PRK03059 672 LSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELAERL 749 (856)
T ss_pred ecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHHHHH
Confidence 3566789999999999999999999999999999999999885 5778899999984 455 445679999999999999
Q ss_pred cCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHH
Q 020194 189 RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFD 267 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~ 267 (329)
.++... ..... ++.+++. + .+..+++|.|++ .+..+|+|+|.|+|||||||+
T Consensus 750 ~~~~~~---~~~~~----~~~~~~~-------~-------------~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~ 802 (856)
T PRK03059 750 AEQAPL---PEPSK----GRLSRQV-------K-------------HFPITPRVDLRPDERGQYYILSVSANDRPGLLYA 802 (856)
T ss_pred cCCCCc---chhhc----ccccccc-------c-------------CCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHH
Confidence 886531 10110 1111111 2 234788999999 888999999999999999999
Q ss_pred HHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 020194 268 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 323 (329)
Q Consensus 268 I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~ 323 (329)
|+++|+.+|++|++|+|.|.|++|.|+|||+ +.++.+++++++|++.|.++|+
T Consensus 803 Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~---~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 803 IARVLAEHRVSVHTAKINTLGERVEDTFLID---GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred HHHHHHHCCCeEEEEEEeecCCEEEEEEEEc---CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999995 4445677888999999998874
No 14
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=2e-25 Score=232.83 Aligned_cols=173 Identities=18% Similarity=0.295 Sum_probs=143.6
Q ss_pred cCCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcH----HH
Q 020194 12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK----EV 86 (329)
Q Consensus 12 ~~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~----~~ 86 (329)
.+.|.|.+......+.++|+|+++|+||||+++|++|+.+|+||++|+|+| .+|+++|+|+|.+++|. ..++ ++
T Consensus 663 ~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i 741 (856)
T PRK03059 663 TDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLV 741 (856)
T ss_pred CCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHH
Confidence 346888898888889999999999999999999999999999999999986 89999999999998877 3222 46
Q ss_pred HHHHHHHhccccCCCC------C---------cceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194 87 IDYIQQRLETDASFAP------S---------LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (329)
Q Consensus 87 ~~~ie~~L~~~~~~~~------~---------~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t 151 (329)
.+.|+++|.+...... + +...+..+++.+.|+|+|+++||||||++|+++|+.+|+||++|+|+|
T Consensus 742 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T 821 (856)
T PRK03059 742 EHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT 821 (856)
T ss_pred HHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence 6777778877532110 0 011223366778999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194 152 HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (329)
Q Consensus 152 ~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (329)
.++++.|+|||++ .++.+++++++|++.|.++|.
T Consensus 822 ~~~~v~DvF~V~~----~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 822 LGERVEDTFLIDG----SGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred cCCEEEEEEEEcC----CCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999964 224467889999999988763
No 15
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=2.3e-25 Score=230.40 Aligned_cols=168 Identities=20% Similarity=0.210 Sum_probs=142.0
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (329)
Q Consensus 13 ~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~ 92 (329)
++|.|.+.+.. .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|+++|+|+|.+++|.+...+++.+.|++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~ 664 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR 664 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence 67899998888 89999999999999999999999999999999999999999999999999998886543467888898
Q ss_pred HhccccCCC--------C---Cc------ceeee--ecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC
Q 020194 93 RLETDASFA--------P---SL------RSSVG--VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (329)
Q Consensus 93 ~L~~~~~~~--------~---~~------~~~v~--~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~ 153 (329)
+|.+..... . .+ +..+. .+.+.+.++|+|.++||||||++|+++|+.+|+||++|+|+|.+
T Consensus 665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g 744 (774)
T PRK03381 665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG 744 (774)
T ss_pred HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 888753210 0 00 01223 35666789999999999999999999999999999999999999
Q ss_pred CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHH
Q 020194 154 DRAAAVVHVTDHSTGYAIKDPKRLSTIKELL 184 (329)
Q Consensus 154 ~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L 184 (329)
+++.|+|||++ .+|.+++++ .+.|+++|
T Consensus 745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAV 772 (774)
T ss_pred CeEEEEEEEEC-CCCCcCchH--HHHHHHHh
Confidence 99999999999 578888753 56666655
No 16
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=2.2e-24 Score=227.72 Aligned_cols=178 Identities=24% Similarity=0.350 Sum_probs=150.9
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHH----HH
Q 020194 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKE----VI 87 (329)
Q Consensus 13 ~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~----~~ 87 (329)
.++.|.+.+....++++|+|+++||||||++||++|+.+||||++|+|+| .+|+++|+|+|++++|.++.+++ +.
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 45788899988889999999999999999999999999999999999997 89999999999999998765543 45
Q ss_pred HHHHHHhccccCCC-------CC----------cceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEE
Q 020194 88 DYIQQRLETDASFA-------PS----------LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (329)
Q Consensus 88 ~~ie~~L~~~~~~~-------~~----------~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~ 150 (329)
+.|+.+|.+...+. .+ +.+.++++.+.++++|+|.++||||||++|+++|+++|+||.+|+|.
T Consensus 798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~ 877 (931)
T PRK05092 798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA 877 (931)
T ss_pred HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence 55666665542211 00 11223346777889999999999999999999999999999999999
Q ss_pred eeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194 151 THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (329)
Q Consensus 151 t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (329)
|.++++.|+|||++ .+|.++.+++++++|++.|.++|.+.
T Consensus 878 T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~ 917 (931)
T PRK05092 878 TYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEG 917 (931)
T ss_pred EcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence 99999999999999 57888888888999999999999764
No 17
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.93 E-value=2e-24 Score=226.63 Aligned_cols=175 Identities=23% Similarity=0.299 Sum_probs=148.9
Q ss_pred cCCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-ecCCEEEEEEEEEcCCCCCCCcHH----H
Q 020194 12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS-SDGGWFMDVFNVIDCDGKKIRDKE----V 86 (329)
Q Consensus 12 ~~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~-t~~g~~~d~F~V~~~~g~~~~~~~----~ 86 (329)
.+.|.|.+.+....++++|+|+++||||||++||++|+.+|+||++|+|+ |.+|+++|+|+|++.+|.++.+++ +
T Consensus 653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i 732 (850)
T TIGR01693 653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQEL 732 (850)
T ss_pred CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHH
Confidence 34688999887778999999999999999999999999999999999999 589999999999999999886543 5
Q ss_pred HHHHHHHhccccCCC--------C---------CcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEE
Q 020194 87 IDYIQQRLETDASFA--------P---------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEI 149 (329)
Q Consensus 87 ~~~ie~~L~~~~~~~--------~---------~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i 149 (329)
.+.|+++|.+..... . ++++.++++.+..+|+|+|.|.|||||+++|+++|+++|+||.+|+|
T Consensus 733 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i 812 (850)
T TIGR01693 733 LQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI 812 (850)
T ss_pred HHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEE
Confidence 666777777643211 0 11222344777889999999999999999999999999999999999
Q ss_pred EeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 150 WTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (329)
Q Consensus 150 ~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (329)
.|.++++.|+|||++ ..|.++++ ++.+.|+++|.++|
T Consensus 813 ~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 813 TTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred EecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999998 57888876 78899999998876
No 18
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.92 E-value=6e-25 Score=160.87 Aligned_cols=75 Identities=65% Similarity=1.131 Sum_probs=72.9
Q ss_pred eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhh
Q 020194 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR 325 (329)
Q Consensus 251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~ 325 (329)
+|+|+|.|+|||||||+|+++|+++|++|++|+|+|+|++|+|+|||++.+|.|+.+++++++|+++|.++|.|+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999999999999999999999999999999998999999999999875
No 19
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.6e-24 Score=210.42 Aligned_cols=175 Identities=25% Similarity=0.368 Sum_probs=141.2
Q ss_pred cCCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHH---HH
Q 020194 12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKE---VI 87 (329)
Q Consensus 12 ~~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~---~~ 87 (329)
..+|.|.+......+.++|+|+++|+|.||+.+|+++...|+||++|+|+| .+|+++|+|+|++++|.++.+.. +.
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~ 748 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALR 748 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHH
Confidence 567999999988889999999999999999999999999999999999997 89999999999999999886432 22
Q ss_pred HHHHHHhc-cccCCCC--------------CcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee
Q 020194 88 DYIQQRLE-TDASFAP--------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (329)
Q Consensus 88 ~~ie~~L~-~~~~~~~--------------~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~ 152 (329)
..+.+++. +... ++ +|++.+..+.+...++++|.+.||||||+.++++|++++++|++|+|.|.
T Consensus 749 ~~l~~~l~s~~~~-~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~ 827 (867)
T COG2844 749 GELIEALLSGKAQ-PPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827 (867)
T ss_pred HHHHHHHhcCCCC-CccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence 33333333 2222 11 11122233666689999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194 153 NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (329)
Q Consensus 153 ~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (329)
|++++|+|||++ ..|.++++ +....+.+.|.+++.
T Consensus 828 GErveD~F~vt~-~~~~~l~~-~~~q~l~~~ll~al~ 862 (867)
T COG2844 828 GERVEDVFIVTD-ADGQALNA-ELRQSLLQRLLEALL 862 (867)
T ss_pred cccceeEEEEec-cccccCCH-HHHHHHHHHHHHHhc
Confidence 999999999999 57888853 444555565555554
No 20
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.89 E-value=3.6e-23 Score=150.42 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=67.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
+|+|+|.++|||||||+|+++|+++|++|++|||+|+|++++|+|||++.+|+|+.+++++++|+++|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999999999999999999999999999888999998864
No 21
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.89 E-value=6.4e-23 Score=150.18 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=70.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE--ecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhh
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN--TGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR 325 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~--T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~ 325 (329)
|+|+|.|+|||||||+|+++|+++|++|++|||+ |+|++++|+||| +.+|+|++++++++.|+++|++++..|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999999999999 999999999999 888999999989999999999999765
No 22
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.76 E-value=9.5e-18 Score=122.88 Aligned_cols=73 Identities=21% Similarity=0.260 Sum_probs=69.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (329)
+|+|+|.|+||||||++|+++|+++|++|.+|+|.|.|+++.|+|||++ .+|.++.++++.++|++.|.++|.
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999999999999 689999998899999999998874
No 23
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.74 E-value=2.6e-17 Score=119.74 Aligned_cols=69 Identities=28% Similarity=0.371 Sum_probs=64.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (329)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++ .+|.++.++++++.|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999999999999999 68999988888888888764
No 24
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.70 E-value=1.6e-16 Score=117.34 Aligned_cols=72 Identities=24% Similarity=0.377 Sum_probs=68.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHHh
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVD-GLPISSEAERERVIQCLEAAIE 323 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~-g~~l~~~~~~~~l~~~L~~~l~ 323 (329)
|+|+|.++|||||+++|+++|+++|++|+.|+|.|.|+++.|+|||++.+ |.++.+++++++|++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999998 8888888888999999998875
No 25
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.68 E-value=3e-16 Score=114.96 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=66.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEE--eeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW--THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~--t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (329)
|+++|.++||||||++|+++|+++|++|++|+|. |.|+++.|+||| + .+|.++.++++.+.|+++|.++|.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999 999999999999 5 578889888899999999998764
No 26
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.68 E-value=5.4e-16 Score=115.00 Aligned_cols=71 Identities=21% Similarity=0.345 Sum_probs=65.4
Q ss_pred EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 020194 253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER 324 (329)
Q Consensus 253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T-~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~ 324 (329)
+++|.|+||||||++|+++|+++|++|++|+|.| .++++.|+|||++.+|+ ..+++++++|++.|.++|+.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999996 89999999999999777 55667889999999999865
No 27
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.66 E-value=7.8e-16 Score=113.31 Aligned_cols=71 Identities=25% Similarity=0.373 Sum_probs=65.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~-g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l 322 (329)
+.++|.++||||||++|+++|+.+|++|++|+|.|. ++++.|+|||++.+|.++.+++++++|++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 678999999999999999999999999999999988 58999999999999999988888899999998764
No 28
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.66 E-value=1.5e-15 Score=112.15 Aligned_cols=73 Identities=66% Similarity=0.996 Sum_probs=66.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHHcC
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST-GYAIKDPKRLSTIKELLFNVLRG 190 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~-g~~~~~~~~~~~l~~~L~~~L~~ 190 (329)
|+|+|+++||||||++|+++|+.+|+||++|+++|.++.+.|+|+|++ .+ |.++.+++++++|++.|.++|.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999999999999999999998 45 77777788999999999988753
No 29
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.64 E-value=9.4e-15 Score=126.58 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=105.1
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 020194 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 192 (329)
Q Consensus 113 ~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 192 (329)
...+++|++.|+||||+++.++++|+++||||.+.+....++.+.-++.|+. .+ ..+++|+..|.. +.+..
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~----~~----~~~~~le~~L~~-l~~~~ 75 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG----SW----NAITLIESTLPL-KGAEL 75 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC----Ch----hHHHHHHHHHHh-hhhhc
Confidence 3468899999999999999999999999999999999999999999998864 22 456888888776 44333
Q ss_pred CcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHHH
Q 020194 193 DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~l 272 (329)
++ . + ..++.. .+ .+ ......+.++|.+.|||||+++|+++|
T Consensus 76 ~L---~--i-------~v~~~~------~~---------------~~------~~~~~~~~v~v~G~DrPGIV~~vT~~l 116 (190)
T PRK11589 76 DL---L--I-------VMKRTT------AR---------------PR------PAMPATVWVQVEVADSPHLIERFTALF 116 (190)
T ss_pred Ce---E--E-------EEEecc------cc---------------cc------ccCCceEEEEEEECCCCCHHHHHHHHH
Confidence 32 0 1 011110 00 00 011225899999999999999999999
Q ss_pred hcCCeEEEEEEEEecCC--eEEEEEEEE
Q 020194 273 TDMQYVVFHGMVNTGRT--EAYQEFYIR 298 (329)
Q Consensus 273 ~~~~i~I~~a~I~T~g~--~~~D~F~v~ 298 (329)
+++|+||...+..|++. ...+.|.+.
T Consensus 117 a~~~iNI~~L~T~~~~a~~~~~~lf~~~ 144 (190)
T PRK11589 117 DSHHMNIAELVSRTQPAEGERPAQLHIQ 144 (190)
T ss_pred HHcCCChhheEEeeecCCCCCcccEEEE
Confidence 99999999999999985 566666654
No 30
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.62 E-value=1.2e-14 Score=125.88 Aligned_cols=155 Identities=14% Similarity=0.174 Sum_probs=110.0
Q ss_pred CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhcccc---CC
Q 020194 24 CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDA---SF 100 (329)
Q Consensus 24 ~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~---~~ 100 (329)
...+.+|+++++||||+.++++++|+++||||++.+....+|.+.-++.| ++. |.....|+..|.... .+
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~----~~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGS----WNAITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCC----hhHHHHHHHHHHhhhhhcCe
Confidence 45788999999999999999999999999999999999988877666766 333 445566777665432 11
Q ss_pred CCCcceeee-ecCC-CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC------eEEEEEEEEeCCCCCCCC
Q 020194 101 APSLRSSVG-VMPT-EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND------RAAAVVHVTDHSTGYAIK 172 (329)
Q Consensus 101 ~~~~~~~v~-~~~~-~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~------~~~d~f~V~~~~~g~~~~ 172 (329)
....++.-. .... ...+.++|+|.||||+++.++++|+++|+||.+.+..+.+. .+.-.|.+.-| .+.
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP-~~~--- 153 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP-ASQ--- 153 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC-CCC---
Confidence 111111000 0111 12489999999999999999999999999999999988763 34455555553 222
Q ss_pred CHHHHHHHHHHHHHHHcCCCC
Q 020194 173 DPKRLSTIKELLFNVLRGYDD 193 (329)
Q Consensus 173 ~~~~~~~l~~~L~~~L~~~~~ 193 (329)
..+.|+++|.+ |++++.
T Consensus 154 ---~~~~L~~~l~~-l~~eL~ 170 (190)
T PRK11589 154 ---DAANIEQAFKA-LCTELN 170 (190)
T ss_pred ---CHHHHHHHHHH-HHHHhC
Confidence 24677787776 444444
No 31
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=5.6e-15 Score=108.71 Aligned_cols=71 Identities=34% Similarity=0.524 Sum_probs=63.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (329)
+.|+|+++||||||++++++|+.+|+||++|+|+|. +|.+.|+|||++ .+|.++.++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999998 588999999998 56777766788999999988754
No 32
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=1.6e-14 Score=107.02 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=63.4
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t-~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (329)
.++|+++||||||++++++|+++|+||++|+|+| .++.+.|+|||+++ ++. ..+++++++++++|.++|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999997 78899999999984 555 44568999999999998865
No 33
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.58 E-value=1.7e-14 Score=103.60 Aligned_cols=65 Identities=25% Similarity=0.302 Sum_probs=56.4
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHh
Q 020194 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94 (329)
Q Consensus 28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L 94 (329)
.+|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|++.+|. .+..+.+.++++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~--~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG--ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc--chHHHHHHHHHhh
Confidence 58999999999999999999999999999999996 89999999999999887 2234566666554
No 34
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.50 E-value=1e-12 Score=133.87 Aligned_cols=144 Identities=14% Similarity=0.073 Sum_probs=117.8
Q ss_pred EEEEEEe-CCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCCcc
Q 020194 117 TSIEFTG-TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFR 195 (329)
Q Consensus 117 ~~i~v~~-~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~ 195 (329)
..++|.. +|++|+|.+++++|+.+|++|.+|++.+ +|.+...|.|.. ..|.+. ++ ..+++.+..++.++.++
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~~- 619 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELPD- 619 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCCc-
Confidence 5677777 9999999999999999999999999999 888899999998 567764 33 77888888888776542
Q ss_pred cccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHHHhcC
Q 020194 196 KAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDM 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~l~~~ 275 (329)
+. ..+|++.+.. +++||++.||||+|+.|+++|.
T Consensus 620 -----~~----------------------------------~~~~~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~-- 653 (693)
T PRK00227 620 -----PA----------------------------------PGITATFWHG-----NILEVRTEDRRGALGALLGVLP-- 653 (693)
T ss_pred -----cc----------------------------------CCCCceEeeC-----cEEEEEeCccccHHHHHHHHhh--
Confidence 10 0246666653 8999999999999999999999
Q ss_pred CeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 020194 276 QYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 323 (329)
Q Consensus 276 ~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~ 323 (329)
+|.+|+++|.|..+.|.||+... . .+.+++..+..++.
T Consensus 654 --~~~~~~~~~~g~~~~~~~~~~~~-------~-~r~~~~~~~~~~~~ 691 (693)
T PRK00227 654 --DLLWITASTPGATMIVQAALKPG-------F-DRATVERDVTRVLA 691 (693)
T ss_pred --hhhhHhhcCCCcceEEEEEecCc-------c-cHHHHHHHHHHHHh
Confidence 89999999999999999999822 1 25677777777664
No 35
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.41 E-value=1.9e-12 Score=107.65 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=119.1
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 020194 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 192 (329)
Q Consensus 113 ~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 192 (329)
..++++|+++|.||||+...++++..++||||.++|+...|+.+..+..++- . .+...+|+..|.. +..++
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg----s----~dav~~le~~l~~-l~~~~ 72 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG----S----WDAVTLLEATLPL-LGAEL 72 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee----C----HHHHHHHHHHhhc-ccccC
Confidence 3467899999999999999999999999999999999999999998888875 2 3567888888775 55555
Q ss_pred CcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHHH
Q 020194 193 DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~l 272 (329)
++ .+. . .|. -+++ .......+.++|.+.|||||+.+++++|
T Consensus 73 ~L-----~v~------m-~rt-------------------------~~~~--~~a~~~~v~v~v~a~DrpgIv~~~T~lf 113 (176)
T COG2716 73 DL-----LVV------M-KRT-------------------------GAHP--TPANPAPVWVYVDANDRPGIVEEFTALF 113 (176)
T ss_pred Ce-----EEE------E-eec-------------------------CCCc--cCCCCceEEEEEEecCCccHHHHHHHHH
Confidence 53 110 0 010 0110 0134577899999999999999999999
Q ss_pred hcCCeEEEEEEEEecCC--eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 273 TDMQYVVFHGMVNTGRT--EAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322 (329)
Q Consensus 273 ~~~~i~I~~a~I~T~g~--~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l 322 (329)
..+|++|++....|+.. .-.-.|+++=.-+-|.+- ....|++.+++..
T Consensus 114 ~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~--~i~~l~~~f~al~ 163 (176)
T COG2716 114 DGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL--SISALRDAFEALC 163 (176)
T ss_pred HhcCCchhhceeeeeecCCCCccceehhhhccCCCcC--cHHHHHHHHHHHH
Confidence 99999999999999864 366678775443444432 2456666655543
No 36
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.41 E-value=2.2e-12 Score=94.56 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=60.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE 319 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~ 319 (329)
|.++|.++||||+|++|+.+|+++|++|.+|++.|.++.+.|+|+|++.+|.++ ++++.++|++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999889999999999999988 6667777777664
No 37
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.39 E-value=3.4e-12 Score=92.72 Aligned_cols=70 Identities=27% Similarity=0.437 Sum_probs=64.3
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l 322 (329)
|+++|.++||||+|++|+++|+++|++|.++++.|.++.+.|.|++++.+|.+ .+.+..++|+++|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence 67999999999999999999999999999999999999999999999999998 45677889999988764
No 38
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.35 E-value=9.9e-12 Score=91.10 Aligned_cols=68 Identities=25% Similarity=0.509 Sum_probs=60.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhc
Q 020194 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLE 95 (329)
Q Consensus 27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~ 95 (329)
+++|+|+++|+||+|++++++|+.+|+||++|.++|.+++++|+|+|.++++.+. +.+..+.|++.|-
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999988889999999999988876 5556677777764
No 39
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.32 E-value=3.1e-11 Score=123.11 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=120.2
Q ss_pred EEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCC-CCcc
Q 020194 28 TVIKVDS-VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA-PSLR 105 (329)
Q Consensus 28 ~~v~v~~-~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~-~~~~ 105 (329)
-.++|.. +|++|++.+++++|+.+|++|.+|++.+ +|.++..|.|....|.+.++..+.+.+..++.+..+.. +.+.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT 625 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence 5777887 9999999999999999999999999999 88888999999988988777788888888888876532 2233
Q ss_pred eeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 020194 106 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (329)
Q Consensus 106 ~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (329)
+...+. ++++|.+.||+|+|+.++++|. +|..|++.|.|..++|.||+.. |. ...+++.++.
T Consensus 626 ~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~---~~------~r~~~~~~~~ 687 (693)
T PRK00227 626 ATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP---GF------DRATVERDVT 687 (693)
T ss_pred ceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC---cc------cHHHHHHHHH
Confidence 333332 7999999999999999999999 8889999999999999999984 21 2367778877
Q ss_pred HHHcC
Q 020194 186 NVLRG 190 (329)
Q Consensus 186 ~~L~~ 190 (329)
.+|.+
T Consensus 688 ~~~~~ 692 (693)
T PRK00227 688 RVLAG 692 (693)
T ss_pred HHHhc
Confidence 77654
No 40
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.32 E-value=1.8e-11 Score=87.95 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=54.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (329)
+.|.|+++||||||++++++|+.+|+||++|+|+|. +|.+.|+|+|.+ .+|. .-+.|+++|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d-~~~~------~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG-WKRG------ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec-CCcc------chHHHHHHHHHhh
Confidence 578999999999999999999999999999999986 467789999998 3443 2255667776655
No 41
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.30 E-value=1.5e-11 Score=102.42 Aligned_cols=158 Identities=13% Similarity=0.163 Sum_probs=112.8
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccC---CC
Q 020194 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS---FA 101 (329)
Q Consensus 25 ~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~---~~ 101 (329)
..+.+|++++.||||+...+|+...++||||+++++...++.+.-+.. .+|. |+-...||..|....+ +.
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~l---isgs----~dav~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIML---ISGS----WDAVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEE---EeeC----HHHHHHHHHHhhcccccCCeE
Confidence 457899999999999999999999999999999999997776653333 3555 8888999998876432 22
Q ss_pred CCccee-eee-cCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHH
Q 020194 102 PSLRSS-VGV-MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRL 177 (329)
Q Consensus 102 ~~~~~~-v~~-~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~ 177 (329)
..+.+. ... ......+.+.|.+.||||++.++|+.|..+|+||.+....|.. +.-.-.|...- .-.-|.+ -..
T Consensus 76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa~--~~i 152 (176)
T COG2716 76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPAN--LSI 152 (176)
T ss_pred EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCCc--CcH
Confidence 111111 111 2344678899999999999999999999999999988887752 33334565544 1223332 345
Q ss_pred HHHHHHHHHHHcCCCC
Q 020194 178 STIKELLFNVLRGYDD 193 (329)
Q Consensus 178 ~~l~~~L~~~L~~~~~ 193 (329)
..|++++.. |.++..
T Consensus 153 ~~l~~~f~a-l~~~L~ 167 (176)
T COG2716 153 SALRDAFEA-LCDELN 167 (176)
T ss_pred HHHHHHHHH-HHHhhc
Confidence 778888776 555443
No 42
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.26 E-value=7.4e-11 Score=85.59 Aligned_cols=70 Identities=41% Similarity=0.609 Sum_probs=61.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (329)
|.+.|.++|+||+|++|+++|+.+|++|.++++.+.++.+.+.|++++ ..|.+. +.+++++|++.|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999998888899999998 466664 5578899999887653
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.09 E-value=1.2e-09 Score=78.87 Aligned_cols=69 Identities=32% Similarity=0.483 Sum_probs=61.3
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA 321 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~ 321 (329)
+.+.|.++|+||+|++|+++|+++|++|.++.+.|.++...+.|++.+.++.+ .++++++.|++.|...
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhh
Confidence 36889999999999999999999999999999999888999999999988887 4456778898888765
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.96 E-value=9.5e-09 Score=74.09 Aligned_cols=69 Identities=41% Similarity=0.627 Sum_probs=59.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (329)
+.|.|.++|+||+|++++++|+.+|++|.++.+.+.++...+.|++..+ ++... ++++++++++.|.++
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRPL-DPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhh
Confidence 3688999999999999999999999999999999987777899999984 44543 457888899888764
No 45
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.85 E-value=3.5e-08 Score=72.96 Aligned_cols=64 Identities=25% Similarity=0.404 Sum_probs=54.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (329)
..+|++.|+||||+++.++++|+++|+||.+.+..+.++++...+.|.-+ ++..++|+++|.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999863 35678888888873
No 46
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.76 E-value=2.8e-07 Score=72.08 Aligned_cols=112 Identities=25% Similarity=0.259 Sum_probs=85.8
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCccee
Q 020194 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSS 107 (329)
Q Consensus 28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~~~ 107 (329)
-+|+++..|+||-++..+.+|..+|+||..-.|.-.+.+.+..++|..++. . .++|....- .
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~-------A----~~~Lee~gF-------~ 65 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDE-------A----HSVLEEAGF-------T 65 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHH-------H----HHHHHHCCc-------E
Confidence 479999999999999999999999999998888777777777777644322 2 234443320 0
Q ss_pred eeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEE
Q 020194 108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHV 162 (329)
Q Consensus 108 v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V 162 (329)
|. ..-++-|...|+||-++.|+++|.++++|+.....++.. +.+..+|.+
T Consensus 66 Vr-----~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ 116 (142)
T COG4747 66 VR-----ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV 116 (142)
T ss_pred EE-----eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh
Confidence 11 244788999999999999999999999999999999865 444444444
No 47
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.63 E-value=5.6e-07 Score=66.50 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=56.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 020194 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER 324 (329)
Q Consensus 251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~ 324 (329)
+.+|++.++||||+++.|+++|+++|.||...+..+.|++..-.+.|+-+ ++..++|+++|.+...+
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999998988766 44678888888776554
No 48
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.61 E-value=5.2e-07 Score=64.08 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=47.8
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC--eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT--EAYQEFYIRHVDGLPISSEAERERVIQCLEAA 321 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~--~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~ 321 (329)
|.+.|.++||||+|++|+++|+++|+||.++...+.++ .....+...+. ...+.+.++|.+.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE--------EDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG--------HGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC--------CCHHHHHHHHHcc
Confidence 67899999999999999999999999999999999887 34444444443 3455666665543
No 49
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.58 E-value=4.2e-07 Score=67.34 Aligned_cols=68 Identities=22% Similarity=0.350 Sum_probs=54.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD 193 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~ 193 (329)
++|++.|+||||+.+.|+++|+++|+||.+++.++.++.+.-...+..+ + ...+.|++.|.. +.++.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~----~~~~~l~~~l~~-~~~~~~ 69 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----W----DAIAKLEAALPG-LARRLD 69 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----c----ccHHHHHHHHHH-HHHHcC
Confidence 6899999999999999999999999999999999988888666666542 1 124778887776 544443
No 50
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.53 E-value=4.1e-07 Score=62.85 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=51.7
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHH
Q 020194 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEV 86 (329)
Q Consensus 28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~ 86 (329)
++|+|.|||+.||=.++|+++.+.|++|..+++.|++.|++..|+|.......-..|.+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~l 59 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDL 59 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHH
Confidence 47999999999999999999999999999999999999999999998765443345754
No 51
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.53 E-value=4.7e-07 Score=66.67 Aligned_cols=63 Identities=24% Similarity=0.224 Sum_probs=52.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (329)
+|+|.|+||||+.++++++|+++|+||.+.+..+.++.+.-.|.+.-| .+. ..+.|++.|...
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l 63 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFK 63 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHH
Confidence 378999999999999999999999999999999998888888888763 121 247788887763
No 52
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.46 E-value=2.1e-06 Score=60.84 Aligned_cols=61 Identities=26% Similarity=0.348 Sum_probs=47.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC--eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND--RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~--~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
|.|.|.++||||+|++++++|+++|+||.++.+.+.++ ....++...+ ....+.+.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence 57899999999999999999999999999999999876 3334444433 2344666666665
No 53
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.45 E-value=1.5e-06 Score=64.39 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=41.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 020194 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74 (329)
Q Consensus 27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~ 74 (329)
+.+|++.|+||||+.++++++|+++|+||.+.+.+..+|.+.-.+.+.
T Consensus 1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~ 48 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE 48 (77)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEE
Confidence 368999999999999999999999999999999999777775555543
No 54
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.37 E-value=2e-06 Score=63.27 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=48.4
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (329)
Q Consensus 29 ~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~ 92 (329)
.|+|.++||||+.++++++|+++||||.+.+..+.++.+.-.|.+.-+.+.. ..++.+.++.
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~--~~~l~~~l~~ 62 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSAD--SEALLKDLLF 62 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCC--HHHHHHHHHH
Confidence 3789999999999999999999999999999888777777678877665532 1344444444
No 55
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.22 E-value=5.4e-06 Score=62.95 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=54.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD 193 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~ 193 (329)
.+|++.|+|+||++++|+++|+++|+||.+.+..+.++.+.-.+.+.-+ +.. ...+.|++.|.. |.++.+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~----~~~~~L~~~l~~-l~~~~~ 71 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESN----LDFAELQEELEE-LGKELG 71 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCC----CCHHHHHHHHHH-HHHHcC
Confidence 5789999999999999999999999999999999988887777777653 101 124778888777 444333
No 56
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.12 E-value=1e-05 Score=61.40 Aligned_cols=49 Identities=24% Similarity=0.263 Sum_probs=42.3
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 020194 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC 76 (329)
Q Consensus 28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~ 76 (329)
..|++.|+|+||++++++++|+++|+||.+.+.++.++.+.-.+.+.-+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~ 50 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS 50 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence 4789999999999999999999999999999998877766656666544
No 57
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.09 E-value=2.8e-05 Score=57.70 Aligned_cols=67 Identities=27% Similarity=0.298 Sum_probs=49.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC------CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN------DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~------~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (329)
+|++.|+|+||++++|+++|+++|+||.+.+..+.+ +.+.-.+.+..| .+ . ...++++.|.. +.++
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~--~----~~~~l~~~l~~-l~~~ 72 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG--T----DLDALREELEE-LCDD 72 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC--C----CHHHHHHHHHH-HHHH
Confidence 478999999999999999999999999999999976 444445555442 11 1 24677787776 4443
Q ss_pred C
Q 020194 192 D 192 (329)
Q Consensus 192 ~ 192 (329)
.
T Consensus 73 ~ 73 (81)
T cd04869 73 L 73 (81)
T ss_pred h
Confidence 3
No 58
>PRK00194 hypothetical protein; Validated
Probab=98.09 E-value=1.7e-05 Score=60.38 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=53.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD 193 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~ 193 (329)
.+++++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+ +.+. ..+.|++.|.. +.+...
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~----~~~~l~~~l~~-l~~~~~ 73 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK----DFAELKEELEE-LGKELG 73 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC----CHHHHHHHHHH-HHHHcC
Confidence 67899999999999999999999999999999999877766665555442 1111 13677777766 444333
No 59
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.09 E-value=2.7e-05 Score=57.82 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=45.5
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecC------CEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG------GWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (329)
Q Consensus 29 ~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~------g~~~d~F~V~~~~g~~~~~~~~~~~ie~ 92 (329)
.|++.|+|+||+.++++++|+++|+||.+.+..+.+ +.+.-.+.+.-+.+. +..++.+.++.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~--~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGT--DLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCC--CHHHHHHHHHH
Confidence 378999999999999999999999999999998844 555545665554332 22345555544
No 60
>PRK00194 hypothetical protein; Validated
Probab=98.08 E-value=1.7e-05 Score=60.35 Aligned_cols=50 Identities=26% Similarity=0.290 Sum_probs=42.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 020194 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC 76 (329)
Q Consensus 27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~ 76 (329)
...|++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~ 52 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS 52 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec
Confidence 57899999999999999999999999999999988877777665555433
No 61
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.06 E-value=2.4e-05 Score=57.29 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=44.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
+|++.|+||||++++|+++|+++|+||.+.+..+.. +.+.-.+.+..+ .+ . -..+.+++.|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~-~~-~----~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE-GF-D----LSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC-CC-C----CCHHHHHHHHHH
Confidence 478999999999999999999999999999999732 332222222221 00 0 125778877776
No 62
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.00 E-value=5.4e-05 Score=55.35 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=32.3
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 020194 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS 62 (329)
Q Consensus 29 ~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t 62 (329)
+|++.|+||||++++++++|+++|+||.+.+.++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 4789999999999999999999999999999986
No 63
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.99 E-value=0.00022 Score=66.07 Aligned_cols=119 Identities=9% Similarity=0.017 Sum_probs=67.1
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE--ecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCC
Q 020194 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS--SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS 103 (329)
Q Consensus 26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~--t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~ 103 (329)
...+|+|.|+||||+.++++++|+++|+||++.+.+ +..|.++-.+.+........+..++.+.+++.-.+ .+
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~-l~---- 82 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEK-FD---- 82 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH-hC----
Confidence 346899999999999999999999999999999997 33333332322222111112223444444442222 11
Q ss_pred cceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194 104 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (329)
Q Consensus 104 ~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t 151 (329)
....+.+.. ....|-|.+.-+..-|..|..+.....++..=+-+.+
T Consensus 83 l~~~i~~~~--~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis 128 (289)
T PRK13010 83 MQWAIHPDG--QRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS 128 (289)
T ss_pred CeEEEecCC--CCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence 111222222 2234444444444557777777777766654444444
No 64
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.97 E-value=0.00034 Score=64.65 Aligned_cols=116 Identities=8% Similarity=0.091 Sum_probs=70.5
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCcce
Q 020194 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS 106 (329)
Q Consensus 29 ~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~~ 106 (329)
+|++.|+|+||+.++++++|+++|+||++.+.+.. .|++.-.+.+..+ +...+.+++.+.++.++..... ...
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~----l~i 76 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFE----MTW 76 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhC----CEE
Confidence 58999999999999999999999999999999873 4666645555433 2222234455555553333222 111
Q ss_pred eeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194 107 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (329)
Q Consensus 107 ~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t 151 (329)
.+... .....|-|.+.-+..-|..|........+++.=+-+.+
T Consensus 77 ~l~~~--~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis 119 (280)
T TIGR00655 77 ELILA--DKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS 119 (280)
T ss_pred EEecC--CCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence 12111 12234444444445557777777777666654444444
No 65
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=4.1e-05 Score=53.08 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=57.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (329)
++|+|.++|+.||=.++++++...|++|..+.+.|.|.....+|+|... ...+ +-+|..|++.|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhc
Confidence 4789999999999999999999999999999999988888899999862 2223 35789999888763
No 66
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.91 E-value=0.00016 Score=53.61 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=48.9
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLE 319 (329)
Q Consensus 250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~--g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~ 319 (329)
..+.|.|.+.||||+|++|++++++.|++|..+.+.+. ++.+.-.|.+.=. +.+.++.|.+.|+
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~------d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK------DLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES------SHHHHHHHHHHHC
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC------CHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999985 4567777766432 3456777777664
No 67
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.74 E-value=0.0003 Score=52.16 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=46.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (329)
.+.|.|.+.||||+|++|+.++++.|+||.+..+.+. ++.+...|.+.-. +.+.+..|-+.|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999995 4566666766642 3345555555443
No 68
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.74 E-value=0.00012 Score=67.92 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=54.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe--eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT--HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 192 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t--~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 192 (329)
..++|+|.|+||||+.+.|+++|+++|+||.+.+..+ .++.+.-.+.+.-. ..+ ...+.|+++|.. |.++.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~--~~~----~~~~~L~~~L~~-l~~~l 77 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD--GLI----FNLETLRADFAA-LAEEF 77 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC--CCC----CCHHHHHHHHHH-HHHHh
Confidence 5689999999999999999999999999999999999 77765555555430 111 226788888776 54444
Q ss_pred C
Q 020194 193 D 193 (329)
Q Consensus 193 ~ 193 (329)
.
T Consensus 78 ~ 78 (286)
T PRK06027 78 E 78 (286)
T ss_pred C
Confidence 4
No 69
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.72 E-value=4.9e-05 Score=57.03 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=52.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (329)
..+|+|.|.||||+.+.++++|+++|+||++-...-..|.+...+.|..+ ... .....+++.|....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~~----~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KEV----VDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hHh----ccHHHHHHHHHHHH
Confidence 56899999999999999999999999999988777777888888888653 111 23456666666543
No 70
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.69 E-value=0.0019 Score=59.94 Aligned_cols=116 Identities=8% Similarity=0.011 Sum_probs=69.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCc
Q 020194 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL 104 (329)
Q Consensus 27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~ 104 (329)
...|+|.|+||||+.++++++|+++|+||.+.+.++ .++.+.-.+.+..+.+. +...+.+.++. +..+..+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~--~~~~L~~~L~~-l~~~l~l---- 79 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL--DEDALRAGFAP-IAARFGM---- 79 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC--CHHHHHHHHHH-HHHHhCc----
Confidence 468999999999999999999999999999999985 44555545555444443 12334444444 2222211
Q ss_pred ceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194 105 RSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (329)
Q Consensus 105 ~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t 151 (329)
...+.+... ...|.|.+.-+.--|..+..+.....++..=+-+.+
T Consensus 80 ~i~i~~~~~--~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK13011 80 QWELHDPAA--RPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS 124 (286)
T ss_pred EEEEeeccc--CceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence 111222111 223444444444457777777777666544444444
No 71
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.69 E-value=0.0018 Score=60.08 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=41.3
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 020194 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV 73 (329)
Q Consensus 26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V 73 (329)
.+..|++.|+||||+.+.++++|+++|+||.+.+.++ .+|.+.-.+.+
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v 54 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEF 54 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEE
Confidence 4678999999999999999999999999999999998 66765544444
No 72
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.62 E-value=0.004 Score=49.10 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=75.5
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCCcccc
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKA 197 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~~ 197 (329)
+|+|...++||=|+.++.+|+.+|+||.-..|.-.++--..-+.|.. + +.-.+.|+ +. +
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~---------~---d~A~~~Le----e~-g---- 63 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR---------P---DEAHSVLE----EA-G---- 63 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC---------h---HHHHHHHH----HC-C----
Confidence 68899999999999999999999999987777655443333333332 1 11112222 21 1
Q ss_pred cccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHHHhcCCe
Q 020194 198 KTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQY 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i 277 (329)
|. |. ..-++-|...|+||=|..|+.+|.+.++
T Consensus 64 -------------------------F~-----------------Vr------~~dVlaVEmeD~PG~l~~I~~vl~d~di 95 (142)
T COG4747 64 -------------------------FT-----------------VR------ETDVLAVEMEDVPGGLSRIAEVLGDADI 95 (142)
T ss_pred -------------------------cE-----------------EE------eeeEEEEEecCCCCcHHHHHHHHhhcCc
Confidence 10 11 1246778889999999999999999999
Q ss_pred EEEEEEEEecC-CeEEEEEEE
Q 020194 278 VVFHGMVNTGR-TEAYQEFYI 297 (329)
Q Consensus 278 ~I~~a~I~T~g-~~~~D~F~v 297 (329)
|+.++-..+.. +.+.-.|-+
T Consensus 96 NldYiYAFv~ek~KAlli~r~ 116 (142)
T COG4747 96 NLDYIYAFVTEKQKALLIVRV 116 (142)
T ss_pred CceeeeeeeecCceEEEEEEh
Confidence 99998866544 445544443
No 73
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.62 E-value=0.00061 Score=49.45 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=46.9
Q ss_pred EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
|.|.+.||||+|.+|+.++++.|++|......+.. ..+.-.|-+.-. +.+.++.+.++|+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~------~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP------SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC------CHHHHHHHHHHHhc
Confidence 68899999999999999999999999998887653 556666655322 34566777777653
No 74
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.59 E-value=0.00034 Score=64.63 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=51.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD 193 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~ 193 (329)
+|+|.|+|+||+.+.|+++|+++|+||.+.+.+.. ++.+.-.+.+..+ +..+ ..+.|++.|..++..+.+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~~~~~~~~ 73 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKSALAEKFE 73 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999985 4676666666542 2122 246777777764444333
No 75
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.56 E-value=0.00042 Score=64.29 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=48.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEE--eeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW--THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~--t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
..++|+|.|+||||+.+.|+++|+++|+||.+.+.+ +..+.+...+.+.. .....+ ..+.|+++|..
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~-~~~~~~----~~~~l~~~l~~ 76 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHA-QSAEAA----SVDTFRQEFQP 76 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEc-CCCCCC----CHHHHHHHHHH
Confidence 457899999999999999999999999999999998 44455554433432 111122 24667777766
No 76
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.53 E-value=0.00043 Score=50.57 Aligned_cols=58 Identities=7% Similarity=0.091 Sum_probs=42.6
Q ss_pred EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194 253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE 319 (329)
Q Consensus 253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~ 319 (329)
-|+|.+.||+|+|++|+.++++.|++|.+..+.+. +... |-+. +.+.+++..|.++|+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~------v~~~~~L~~li~~L~ 59 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFP------TIEFEKLQTLMPEIR 59 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeE------ecCHHHHHHHHHHHh
Confidence 37899999999999999999999999999998875 2211 2221 123455666666655
No 77
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.53 E-value=0.0013 Score=47.64 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=46.0
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
+.|.+.||||+|++|+.++++.|+||.+....+.. +.+...|.+.-. +.++++.+...|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence 67899999999999999999999999998887754 555555655531 23566666666554
No 78
>PRK07431 aspartate kinase; Provisional
Probab=97.51 E-value=0.061 Score=55.03 Aligned_cols=216 Identities=13% Similarity=0.167 Sum_probs=127.6
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccC--
Q 020194 25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS-- 99 (329)
Q Consensus 25 ~~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~-- 99 (329)
.+...|++.+. +.+|+++++..+|+..|++|.... ..+..+ +|.|...+. .+..+.|++.+.....
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~---sSe~~I-s~vv~~~d~-----~~av~~Lh~~f~~~~~~~ 416 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS---TSEVKV-SCVIDAEDG-----DKALRAVCEAFELEDSQI 416 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE---cCCCEE-EEEEcHHHH-----HHHHHHHHHHhccCCccc
Confidence 36778888875 789999999999999999997444 233333 355543221 3566677777743321
Q ss_pred -CCCC-c---ceeee-ecCCCCeEEEEEE-eCCCccHHHHHHHHHHhCCCcEEEEEEEe-eC--CeEEEEEEEEeCCCCC
Q 020194 100 -FAPS-L---RSSVG-VMPTEEHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWT-HN--DRAAAVVHVTDHSTGY 169 (329)
Q Consensus 100 -~~~~-~---~~~v~-~~~~~~~~~i~v~-~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t-~~--~~~~d~f~V~~~~~g~ 169 (329)
+.|. + ...+. .....+...|++. .++.+|+++++.+.|+++|++|..-.... .+ |...-.|.+..
T Consensus 417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----- 491 (587)
T PRK07431 417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----- 491 (587)
T ss_pred ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence 1111 0 11121 2333445555554 56889999999999999999998654321 12 12334455432
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCC
Q 020194 170 AIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEK 249 (329)
Q Consensus 170 ~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~ 249 (329)
+...++.+.+.+ |....+ ...+.+. .
T Consensus 492 -----~~~~~~~~~l~~-l~~~~~---------------------------------------------~~~i~~~---~ 517 (587)
T PRK07431 492 -----EDREAAQKVLRE-LAKQLP---------------------------------------------GAEVEDG---P 517 (587)
T ss_pred -----HHHHHHHHHHHH-HHHhcC---------------------------------------------CceEEEe---C
Confidence 122333232332 222111 0112222 2
Q ss_pred CeEEEEEEeC---CCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEE-EEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 250 DYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQE-FYIRHVDGLPISSEAERERVIQCLEAAI 322 (329)
Q Consensus 250 ~~t~l~v~a~---DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~-F~v~~~~g~~l~~~~~~~~l~~~L~~~l 322 (329)
....+.|.+. .+||++.++.++|++.||++.... | ..... |.| +. +..++..++|.+.+
T Consensus 518 ~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~---S~~~Is~vV-~~--------~~~~~av~~Lh~~f 580 (587)
T PRK07431 518 AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--T---SEIRTSCVV-AE--------DDGVKALQAVHQAF 580 (587)
T ss_pred CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c---cceEEEEEE-eH--------HHHHHHHHHHHHHh
Confidence 5678888875 899999999999999999997665 2 33343 544 33 23455555555554
No 79
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.50 E-value=0.00015 Score=54.41 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=39.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 020194 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73 (329)
Q Consensus 27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V 73 (329)
...|+|.++||||+.+.++++|+++|+||++-+.+--+|++--.+.|
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV 49 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLV 49 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEE
Confidence 46899999999999999999999999999987766666766544544
No 80
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.50 E-value=0.004 Score=57.73 Aligned_cols=71 Identities=11% Similarity=0.216 Sum_probs=51.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 192 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 192 (329)
..++|+|.|+||||+.+.+|++|+++|+||.+.+..+. ++.+.-.+.+..+ .+ . ..+.|+++|.. +.++.
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~--~----~~~~L~~~L~~-l~~~l 77 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EG--L----DEDALRAGFAP-IAARF 77 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CC--C----CHHHHHHHHHH-HHHHh
Confidence 36789999999999999999999999999999999853 3455545555432 12 1 24778888776 44434
Q ss_pred C
Q 020194 193 D 193 (329)
Q Consensus 193 ~ 193 (329)
.
T Consensus 78 ~ 78 (286)
T PRK13011 78 G 78 (286)
T ss_pred C
Confidence 3
No 81
>PRK07431 aspartate kinase; Provisional
Probab=97.36 E-value=0.053 Score=55.46 Aligned_cols=191 Identities=15% Similarity=0.208 Sum_probs=112.5
Q ss_pred ecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCcceeeeecC
Q 020194 34 SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMP 112 (329)
Q Consensus 34 ~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~~~v~~~~ 112 (329)
..+.+|+++++...|+.+|+||.--.... ..+..-..|.|...+- ....+.|++ +..+.. ... ...
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~-----~~~--i~~ 344 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALG-----GAE--VLV 344 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcC-----CCc--EEE
Confidence 46889999999999999999998664433 3333333577643221 112222222 222111 001 122
Q ss_pred CCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194 113 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (329)
Q Consensus 113 ~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (329)
..+...|.|.|. +.+|+++++..+|++.|++|.... + ......|.|.. +..++..+.|++.+.
T Consensus 345 ~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh~~f~ 410 (587)
T PRK07431 345 ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVCEAFE 410 (587)
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHHHHhc
Confidence 345778888886 789999999999999999996544 2 23334455543 234555566776664
Q ss_pred CCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEE-eCCCcchHHHH
Q 020194 190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMR-SKDRPKLLFDI 268 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~-a~DrpGLL~~I 268 (329)
.+.. ...+.|. + ...+ ...-+-|. ...+...++|. ..+.+|++++|
T Consensus 411 ~~~~----~~~~~~~-------~--------~~~~-----------~~~v~gIa---~~~~~~~i~l~~~~~~~g~~a~i 457 (587)
T PRK07431 411 LEDS----QIEINPT-------A--------SGQD-----------EPEVRGVA---LDRNQAQLAIRNVPDRPGMAASI 457 (587)
T ss_pred cCCc----ccccCcc-------c--------cCCC-----------CCcEEEEE---ccCCEEEEEECCCCCCccHHHHH
Confidence 3221 0011110 0 0000 00001222 23466677765 56889999999
Q ss_pred HHHHhcCCeEEEEEEE
Q 020194 269 VCTLTDMQYVVFHGMV 284 (329)
Q Consensus 269 ~~~l~~~~i~I~~a~I 284 (329)
...|+++|++|....-
T Consensus 458 f~~l~~~~i~id~i~~ 473 (587)
T PRK07431 458 FGALAEANISVDMIVQ 473 (587)
T ss_pred HHHHHHcCCeEEEEEe
Confidence 9999999999998854
No 82
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.0012 Score=59.32 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=46.9
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (329)
Q Consensus 26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~ 92 (329)
...++++.|+|++|+.+++++.|+.+||||.+++-++ ..|+++-.... ..++.+.+.+.+++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f-~~~~~~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEF-EGEGGPLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEE-ecCCCcccHHHHHHHHHH
Confidence 4679999999999999999999999999999999997 34665432222 233333333444444444
No 83
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.25 E-value=0.0039 Score=44.32 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=41.6
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-----CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-----DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-----~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
+.|..+|+||+|++|+.+|+++|+||.+....... +.+...|.+.. .+.+.++.+.+.|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 35788999999999999999999999988766532 33333344432 123455666666554
No 84
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.22 E-value=0.0023 Score=47.04 Aligned_cols=63 Identities=5% Similarity=0.092 Sum_probs=45.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
..+.+...|+||+|+++++.|++.|+||.+..+.... ....-+..+.. | ++...++|.+.|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~---~----~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV---C----TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE---C----CHHHHHHHHHHHhC
Confidence 4789999999999999999999999999998887543 33333333322 1 23456666666654
No 85
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.21 E-value=0.002 Score=45.81 Aligned_cols=44 Identities=7% Similarity=0.034 Sum_probs=36.8
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEE
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI 297 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v 297 (329)
..+.|..+|+||.|++|+.+|++.|+||.+.-+...++. -.|.+
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl 45 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL 45 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence 357788999999999999999999999999988776664 44444
No 86
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.21 E-value=0.0035 Score=44.61 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=29.7
Q ss_pred EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec
Q 020194 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG 287 (329)
Q Consensus 254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~ 287 (329)
+.|..+|+||+|++|+++|++.|++|.+......
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 3578899999999999999999999998876543
No 87
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.20 E-value=0.0025 Score=46.51 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=32.5
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~ 152 (329)
.+.|.+.||+|++++|+.+++..|+||.+..+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999999775
No 88
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.19 E-value=0.0015 Score=44.76 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=38.1
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (329)
Q Consensus 119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~ 164 (329)
+.+..+|+||.+++++..|.++|+||.+..+...+ +.....|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 45788999999999999999999999999988865 55556666643
No 89
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.18 E-value=0.0032 Score=53.93 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=33.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT 286 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T 286 (329)
..+.|.+.|+||+|++|+.+|+.+|+||.+..+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 57899999999999999999999999999999865
No 90
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.0029 Score=45.25 Aligned_cols=47 Identities=11% Similarity=0.083 Sum_probs=37.6
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEEE
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIR 298 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v~ 298 (329)
+.+.+..+|+||.|++|++.|+++|++|......... ....-.|.++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 4678889999999999999999999999988766652 2444466665
No 91
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.16 E-value=0.0028 Score=45.87 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=43.3
Q ss_pred EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194 253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIRHVDGLPISSEAERERVIQCLE 319 (329)
Q Consensus 253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~ 319 (329)
.+.|.+.|+||+|.+|+++|+++|++|......+.. +.+.=.| +++. .+.+..+.+.+.|.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i-~~~~-----~~~~~l~~~i~~L~ 64 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVI-VTHE-----TSEAALNAALAEIE 64 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEE-EEcc-----CCHHHHHHHHHHHH
Confidence 578899999999999999999999999999876543 3333333 3332 12345666666655
No 92
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.14 E-value=0.0046 Score=43.81 Aligned_cols=61 Identities=10% Similarity=0.092 Sum_probs=43.0
Q ss_pred EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194 253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLE 319 (329)
Q Consensus 253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~-g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~ 319 (329)
.+.+.+.|+||+|.+|+.+|+++|++|......+. ++.....++..+. .+ +..+.+.+.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHh
Confidence 46788999999999999999999999999998775 3333333333332 12 34556666554
No 93
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.14 E-value=0.0037 Score=47.87 Aligned_cols=64 Identities=20% Similarity=0.337 Sum_probs=46.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
....|.+...|+||+|++|++.|++.|.||.+..+...+. .+.-+..+.. + ++.++++.+.|.+
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~---~-----~~~i~Qi~kQL~K 71 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN---D-----DQRLEQMISQIEK 71 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc---C-----chHHHHHHHHHhC
Confidence 4567999999999999999999999999999998876543 3322222221 1 2456777666665
No 94
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.12 E-value=0.0029 Score=47.27 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=45.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEE-EEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAA-VVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d-~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
..+.+...|+||.|++|++.|++.|+||.+..+.... ..+.- ++.+.. | ++..++++.+.|.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~K 67 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhC
Confidence 3688999999999999999999999999999998754 33333 333321 2 23556777766665
No 95
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.12 E-value=0.0023 Score=45.49 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=37.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEE
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~ 163 (329)
..+.|..+|+||.|++++..|+++|+||.+..++..++. .++.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 367889999999999999999999999999998776553 344443
No 96
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.11 E-value=0.0015 Score=44.74 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=39.6
Q ss_pred EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEe
Q 020194 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRH 299 (329)
Q Consensus 254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~ 299 (329)
+++...|+||.|.+++..|.+.|+||.+..+...+ +.+.-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 45788999999999999999999999999987665 67877787755
No 97
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.09 E-value=0.0065 Score=43.38 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=32.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~ 152 (329)
+.+.+..+|+||.|+++++.|+++|+||.+......
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 568889999999999999999999999998887775
No 98
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.08 E-value=0.0045 Score=52.98 Aligned_cols=63 Identities=11% Similarity=0.268 Sum_probs=46.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (329)
..+.|.+.|+||++++|+++|+++|+||.+..+.... +...-++.+. +. +...++|++.|.+.
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~----~~----~~~ieqL~kQL~KL 67 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP----GD----DRTIEQLTKQLYKL 67 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE----CC----HHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999997632 3332233332 11 23367788877773
No 99
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.06 E-value=0.0042 Score=45.11 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=45.2
Q ss_pred EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCCCCCHH-HHHHHHHHHH
Q 020194 253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEA-ERERVIQCLE 319 (329)
Q Consensus 253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~l~~~~-~~~~l~~~L~ 319 (329)
.+.|.+.||||+|++|++.+++.|++|......+.. +.+.=.|-+.-. +.+ .++.|.++|+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~------~~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS------TMNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC------chHHHHHHHHHHHh
Confidence 478899999999999999999999999998865543 455555666432 223 5667776665
No 100
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.01 E-value=0.0055 Score=45.04 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=44.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE-ecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN-TGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~-T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
..|.+...|+||+|.+|+.+|+..|+||.+..+. |......-...+... ++...++|...|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~------~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC------TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC------CHHHHHHHHHHHhC
Confidence 4689999999999999999999999999999876 333333333333232 13455666666554
No 101
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0017 Score=58.35 Aligned_cols=69 Identities=17% Similarity=0.369 Sum_probs=48.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (329)
..+++++.|+|++|+.+.|++.|+.+|+||.++.-++. +|++..--.+.. .+.+. ..+.++..+.. +.+
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~-~a~ 76 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP-LAE 76 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH-HHH
Confidence 56899999999999999999999999999999999963 244332111111 12322 34667777665 444
No 102
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.98 E-value=0.0063 Score=45.01 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=45.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC-eEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLE 319 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~-~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~ 319 (329)
+.+.+..+|+||.|++|...|+++|+||.+......+. ...=.|||.-. |. ..+. ..+.+.+.|.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~-~~-~~~~-~~~~~l~~l~ 67 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE-GH-IEDP-NVAEALEELK 67 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE-CC-CCCH-HHHHHHHHHH
Confidence 45677889999999999999999999999987665543 44557777543 44 2332 3444444444
No 103
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.97 E-value=0.0072 Score=43.64 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=31.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~ 152 (329)
-+.+.+.|++|++++++..|+++|+||.+....+.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA 36 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence 47888999999999999999999999999887654
No 104
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.008 Score=43.60 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=45.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHH-HHHHHHHHHHH
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPK-RLSTIKELLFN 186 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~-~~~~l~~~L~~ 186 (329)
.+.|.+.|+||++++|++.|+++|+||......+.. +.+.-.|.+... +.+ .++++.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence 578999999999999999999999999988775533 445556666531 122 55666555554
No 105
>PRK08577 hypothetical protein; Provisional
Probab=96.95 E-value=0.0097 Score=48.89 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=40.1
Q ss_pred EEEEEc---CCCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC
Q 020194 241 QVTVLN---IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR 288 (329)
Q Consensus 241 ~v~i~~---~~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g 288 (329)
+|.+.+ .....+.+.|.+.|+||+|++|+++|+++|++|.+....+..
T Consensus 43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 444544 344589999999999999999999999999999999877654
No 106
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.88 E-value=0.012 Score=41.54 Aligned_cols=35 Identities=11% Similarity=0.292 Sum_probs=32.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~ 152 (329)
.+.+.+.|+||++++|+.+|+++|++|.+....+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPT 36 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeec
Confidence 46788999999999999999999999999988775
No 107
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.86 E-value=0.0096 Score=50.14 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=46.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeE-EEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRA-AAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~-~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
..++|...|+||.|++|++.|+++|+||.+..+...+ ... .-++.|.. ++...++|.+.|.+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~K 65 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNK 65 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhc
Confidence 3688999999999999999999999999999888765 233 34444432 13566777777766
No 108
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.85 E-value=0.0035 Score=44.28 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=37.8
Q ss_pred EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEE
Q 020194 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYI 297 (329)
Q Consensus 254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v 297 (329)
+.|.+.|+||+|.+|+++|+++|++|.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67889999999999999999999999999988765 455556666
No 109
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.83 E-value=0.0072 Score=44.47 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=45.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeE-EEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRA-AAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~-~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
..+.+...|+||.|+++++.|+..|+||.+..+.... +.. .-++.+.+ + ..++.|.+.|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---~------~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---E------RPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---C------chHHHHHHHHhc
Confidence 5789999999999999999999999999999998743 333 34444421 1 345666666655
No 110
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.82 E-value=0.009 Score=42.07 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=37.8
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEE
Q 020194 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNV 73 (329)
Q Consensus 30 v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~--~g~~~d~F~V 73 (329)
+.+.++|++|++++++.+|+++|+||.+...... ++...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 6789999999999999999999999999998764 3676666665
No 111
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.79 E-value=0.013 Score=49.64 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=46.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
..++|...|+||.|++|++.|+++|+||.+..+.... +...-++.+.. ++..++++...|.+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~K 66 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNK 66 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhc
Confidence 4688999999999999999999999999998887654 33334444432 23566777777766
No 112
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.75 E-value=0.0098 Score=42.00 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=30.2
Q ss_pred EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe
Q 020194 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT 286 (329)
Q Consensus 254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T 286 (329)
+.+.+.|+||.|.+|++.|+++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 578899999999999999999999999888765
No 113
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.71 E-value=0.0066 Score=42.49 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=31.2
Q ss_pred EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC
Q 020194 253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR 288 (329)
Q Consensus 253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g 288 (329)
++.|..+|+||-|++++.+|+++|+||.+......+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 467888999999999999999999999888765443
No 114
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.70 E-value=0.011 Score=44.23 Aligned_cols=35 Identities=9% Similarity=0.220 Sum_probs=32.3
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 020194 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS 62 (329)
Q Consensus 28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t 62 (329)
..++++..|+||.+++++++|+..|+||.+-.+..
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~ 37 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTH 37 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecc
Confidence 46899999999999999999999999999988873
No 115
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.65 E-value=0.013 Score=41.62 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=31.7
Q ss_pred EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec
Q 020194 253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG 287 (329)
Q Consensus 253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~ 287 (329)
.+.+.++|+||.|++|++.|++++++|......+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 47788999999999999999999999998887765
No 116
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.64 E-value=0.015 Score=42.83 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=45.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe--cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T--~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
+.+++...++||.|.+|+..|...|+||.+..+.- .++...=++-+ + +. ...+.|...|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~~------~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-SE------RPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-CC------chHHHHHHHHhc
Confidence 57899999999999999999999999999999875 34445555555 2 11 235566665543
No 117
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.63 E-value=0.0091 Score=45.74 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=33.5
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE
Q 020194 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS 61 (329)
Q Consensus 25 ~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~ 61 (329)
.+...++++..|+||.++++++.|+..|.||.+-.+.
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg 42 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCL 42 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe
Confidence 3456799999999999999999999999999988876
No 118
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.61 E-value=0.017 Score=40.87 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=36.4
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEE
Q 020194 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNV 73 (329)
Q Consensus 29 ~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~-~g~~~d~F~V 73 (329)
++.+.++|++|.+++++..|+++++||.+....+. ++...-.|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~ 47 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL 47 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence 57889999999999999999999999998887764 4554434444
No 119
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.60 E-value=0.017 Score=48.69 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=45.6
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC--eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT--EAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~--~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
.++.|...|+||.|++|+..|+++|+||.+..+...++ ...=+|.+. | ++...+.|...|.+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~---~----d~~~i~qi~kQl~K 65 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV---G----DDKVLEQITKQLNK 65 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE---C----CHHHHHHHHHHHhc
Confidence 46889999999999999999999999999998875553 333344442 2 13456777777654
No 120
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.56 E-value=0.0047 Score=44.69 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=51.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--ND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (329)
-|++.|+-||-.|+++|-+|..+|+-|.+|+|..+ ++ +++...++.+ ..+..++.......+.+.+.+.|.+
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~-e~~~~~~~~~~r~~i~drv~~~lmg 76 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLL-EHDRLKLGGRQRSKVVDRVTKTLMG 76 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeec-CCCccccchHHHHHHHHHHHHHHhc
Confidence 37889999999999999999999999999999764 23 3444444443 2233354445566777777766643
No 121
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.54 E-value=0.018 Score=48.76 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=44.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
.+++|...|+||.|++|+..|+.+|+||.+..+.... +...=+|.+. . ++...+++...|.+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~-~------~~~~i~qi~kQl~K 66 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS-G------DEQVIEQITKQLNK 66 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE-C------CHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999876444 2333344342 2 23456667666654
No 122
>PRK08577 hypothetical protein; Provisional
Probab=96.53 E-value=0.039 Score=45.29 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=45.1
Q ss_pred EEEEEeCCC--CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEEE
Q 020194 16 RVVIDNNTC--ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNVI 74 (329)
Q Consensus 16 ~V~v~~~~~--~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~-~g~~~d~F~V~ 74 (329)
.+.+.+... .....+.+.+.|+||+|++++++|+++|+||.+....+ . ++.+.-.|.+.
T Consensus 43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve 105 (136)
T PRK08577 43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD 105 (136)
T ss_pred EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence 455555433 34788999999999999999999999999999888766 3 45555455543
No 123
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.51 E-value=0.023 Score=40.03 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=35.3
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEE
Q 020194 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNV 73 (329)
Q Consensus 30 v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~-~g~~~d~F~V 73 (329)
+.+.++|+||.+++++.+|+++|+||....... . ++...-.+.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 577899999999999999999999999888765 2 4555444544
No 124
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.51 E-value=0.0063 Score=44.02 Aligned_cols=68 Identities=13% Similarity=0.310 Sum_probs=50.5
Q ss_pred EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe--cCCe--EEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTE--AYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322 (329)
Q Consensus 254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T--~g~~--~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l 322 (329)
+|+.++-||-.+||++-+|..+|+.|.+|.|.- .+++ ..=.|.+.+. ++.++......++.+.+...+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-CccccchHHHHHHHHHHHHHH
Confidence 688899999999999999999999999999963 2333 2334555555 555766666677777766554
No 125
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.45 E-value=0.0035 Score=44.59 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=36.1
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 020194 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73 (329)
Q Consensus 30 v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V 73 (329)
+++.+.|+||++++++.+|+++|+||......+.+|.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 67899999999999999999999999877655555776655554
No 126
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.38 E-value=0.039 Score=39.46 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=37.6
Q ss_pred EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 020194 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV 73 (329)
Q Consensus 28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V 73 (329)
+.+.+..+|+||.+++++.+|+++|+||.+....- ..+...-.|.+
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v 49 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV 49 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence 57899999999999999999999999999886553 34566555654
No 127
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.32 E-value=0.04 Score=41.96 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=51.5
Q ss_pred CCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC-eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhhc
Q 020194 249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA 326 (329)
Q Consensus 249 ~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~-~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~ 326 (329)
...|.|-+..+|+||-|+++-..|+++|||+.+..-.-... .-+=.|||. .+|+ .++ ..+.+.+.|...|+-..
T Consensus 12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD-ieg~--~~~-~~~~~l~~L~~~~~~~~ 86 (90)
T cd04931 12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN-LDKK--SAP-ALDPIIKSLRNDIGATV 86 (90)
T ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC--CCH-HHHHHHHHHHHHhCCCC
Confidence 34566667779999999999999999999999887664433 345577774 4565 233 44555566666665433
No 128
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.31 E-value=0.042 Score=37.72 Aligned_cols=44 Identities=23% Similarity=0.284 Sum_probs=35.4
Q ss_pred EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEE
Q 020194 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYI 297 (329)
Q Consensus 254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v 297 (329)
|.|.+.|+||++.+|+..|.+++++|....+...+ +...-.|.+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 45 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTL 45 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEE
Confidence 46789999999999999999999999999988766 333334434
No 129
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.30 E-value=0.022 Score=40.77 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=36.4
Q ss_pred EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 020194 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV 73 (329)
Q Consensus 30 v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V 73 (329)
+.+..+|+||.+++++++|+++|+||.+..... .++...-.|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 467899999999999999999999999887764 45666656665
No 130
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.26 E-value=0.051 Score=37.29 Aligned_cols=45 Identities=24% Similarity=0.473 Sum_probs=35.6
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEE
Q 020194 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVT 163 (329)
Q Consensus 119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~ 163 (329)
+.+.+.|+||.+..++..|.+++++|.+..+...+ +.....|.+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 45779999999999999999999999999888765 3333444444
No 131
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.24 E-value=0.053 Score=40.00 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=39.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~ 164 (329)
+.+.+..+|+||.|+++...|+++|+||.+....... +...-.|+|.-
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 3567778999999999999999999999988877654 35567788865
No 132
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.20 E-value=0.0052 Score=43.71 Aligned_cols=44 Identities=20% Similarity=0.159 Sum_probs=34.7
Q ss_pred EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEE
Q 020194 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI 297 (329)
Q Consensus 254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v 297 (329)
+-+.+.|+||+|.+|+..|++.|++|.+....+.++.+.=.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 45689999999999999999999999888766555455444444
No 133
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.19 E-value=0.015 Score=40.62 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=31.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~ 153 (329)
++.|..+|+||-++++++.|+++|+||.+...+...
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 367889999999999999999999999988775543
No 134
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.16 E-value=0.033 Score=40.17 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=30.4
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee
Q 020194 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (329)
Q Consensus 119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~ 152 (329)
+.+..+|+||-|++++..|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5778999999999999999999999998876654
No 135
>PRK04435 hypothetical protein; Provisional
Probab=96.15 E-value=0.061 Score=44.85 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=46.1
Q ss_pred EEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEc
Q 020194 18 VIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVID 75 (329)
Q Consensus 18 ~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~ 75 (329)
-+..........+.+.+.|+||++++++.+|+.+|+||....... .+|.+.-.|.+..
T Consensus 60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev 118 (147)
T PRK04435 60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT 118 (147)
T ss_pred CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence 344445567789999999999999999999999999999887765 4576665676644
No 136
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=96.12 E-value=0.25 Score=47.98 Aligned_cols=106 Identities=18% Similarity=0.278 Sum_probs=67.7
Q ss_pred CeEEEEEE---ecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194 26 DATVIKVD---SVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (329)
Q Consensus 26 ~~~~v~v~---~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~ 102 (329)
+...|+|. ..+++|.++++..+|+++|++|.--... ..... ..|.|...+. ++..+.|++.+....
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s~~~-Is~~V~~~d~-----~~a~~~L~~~~~~~~---- 327 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PSETS-ISLTVDETDA-----DEAVRALKDQSGAAG---- 327 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CCCce-EEEEEeHHHH-----HHHHHHHHHHHHhcC----
Confidence 45567777 5788999999999999999999744322 12222 2466532111 233344444331110
Q ss_pred CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEE
Q 020194 103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN 146 (329)
Q Consensus 103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~ 146 (329)
... .....+...|.|.|. ++||+++++..+|+..|+||..
T Consensus 328 --~~~--i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 328 --LDR--VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred --Cce--EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 000 123346777888875 7899999999999999999984
No 137
>PRK04435 hypothetical protein; Provisional
Probab=96.00 E-value=0.075 Score=44.29 Aligned_cols=72 Identities=10% Similarity=0.110 Sum_probs=52.4
Q ss_pred EEEc-CCCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194 243 TVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLE 319 (329)
Q Consensus 243 ~i~~-~~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~-g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~ 319 (329)
.|+. .......|.+...|+||+|++|.++|++.|+||.....++. ++.+.-.|-+.-.+. ....+.|.++|+
T Consensus 60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~ 133 (147)
T PRK04435 60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLR 133 (147)
T ss_pred CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHH
Confidence 3455 67799999999999999999999999999999998876543 345555666643211 124566666654
No 138
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.00 E-value=0.04 Score=39.70 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=29.9
Q ss_pred EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec
Q 020194 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG 287 (329)
Q Consensus 254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~ 287 (329)
+.+.-+|+||-|++++..|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5678899999999999999999999988875544
No 139
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.99 E-value=0.021 Score=40.85 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=35.7
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEE
Q 020194 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVT 163 (329)
Q Consensus 119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~ 163 (329)
+.+..+|+||.++++++.|+++|+||.+...... ++...-+|.+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 4578999999999999999999999998877653 34555555553
No 140
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.97 E-value=0.026 Score=36.82 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=31.5
Q ss_pred EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC
Q 020194 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR 288 (329)
Q Consensus 254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g 288 (329)
|.+.++|+||++++|+++|+++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46789999999999999999999999999987654
No 141
>PRK06635 aspartate kinase; Reviewed
Probab=95.89 E-value=0.17 Score=49.22 Aligned_cols=106 Identities=18% Similarity=0.277 Sum_probs=67.2
Q ss_pred EEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCcce
Q 020194 29 VIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS 106 (329)
Q Consensus 29 ~v~v~-~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~~ 106 (329)
.|++. ..+++|.++++..+|+++|+||....... .+|..-..|.|...+. +...+.|++ +..... ..
T Consensus 264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~-----~~ 332 (404)
T PRK06635 264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIG-----AE 332 (404)
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcC-----cc
Confidence 34433 56789999999999999999999654432 3334554676643211 122333333 111110 00
Q ss_pred eeeecCCCCeEEEEEEe---CCCccHHHHHHHHHHhCCCcEEEE
Q 020194 107 SVGVMPTEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNA 147 (329)
Q Consensus 107 ~v~~~~~~~~~~i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A 147 (329)
. .....+...+.|.+ ++.||.++++..+|+++|+||...
T Consensus 333 ~--i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 333 S--VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred e--EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 0 12233566788876 689999999999999999999764
No 142
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=95.71 E-value=0.0076 Score=45.27 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=47.3
Q ss_pred EEEEEeCC-CccHHHHHHHHHHhCCCcEEEEEEEee---------CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Q 020194 118 SIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEIWTH---------NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (329)
Q Consensus 118 ~i~v~~~D-r~Gll~~i~~~l~~~g~~I~~A~i~t~---------~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (329)
+|+|.|+| +.|++++++++|+++|+||.+-+-.+. ...+...|.|..+ +. + .+.++..|.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~~-~---~~~lr~~L~~- 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----PA-D---LEALRAALLE- 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----CC-C---HHHHHHHHHH-
Confidence 47899999 999999999999999999976544321 1244566777642 21 2 4778888776
Q ss_pred HcCCCC
Q 020194 188 LRGYDD 193 (329)
Q Consensus 188 L~~~~~ 193 (329)
+..+.+
T Consensus 72 la~elg 77 (84)
T cd04871 72 LASELN 77 (84)
T ss_pred HhcccC
Confidence 555444
No 143
>PRK07334 threonine dehydratase; Provisional
Probab=95.70 E-value=0.081 Score=51.54 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=49.0
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec-----CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-----RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~-----g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
..+.|+|.+.||||+|.+|+++|++.+++|.+....+. ...+.-.|.|.= .+.++++.|.+.|+.
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET------RDAAHLQEVIAALRA 394 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999998764 344444444421 124567777777764
No 144
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.69 E-value=0.05 Score=35.43 Aligned_cols=35 Identities=37% Similarity=0.615 Sum_probs=31.4
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC
Q 020194 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (329)
Q Consensus 119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~ 153 (329)
|.+.++|++|++++++++|+.+|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999887654
No 145
>PRK07334 threonine dehydratase; Provisional
Probab=95.69 E-value=0.23 Score=48.37 Aligned_cols=65 Identities=17% Similarity=0.269 Sum_probs=49.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-----CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-----NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-----~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
-...|.|.+.||+|+|++|+.+|++.++||.+....+. ++.+.-.|.|.- .+.++++++...|++
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA 394 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999998764 344444444443 134566777777665
No 146
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.68 E-value=0.038 Score=39.06 Aligned_cols=54 Identities=11% Similarity=0.240 Sum_probs=37.0
Q ss_pred CCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 125 DRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 125 Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
|+||.|.+|++.|...|+||.+..+.... +.....+.+.. . +...+.|...|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~----~----~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG----D----DREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee----C----chhHHHHHHHHhc
Confidence 68999999999999999999999998843 44444454443 1 1345666666554
No 147
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.60 E-value=0.073 Score=38.01 Aligned_cols=47 Identities=28% Similarity=0.513 Sum_probs=36.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-C-CeEEEEEEEE
Q 020194 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-N-DRAAAVVHVT 163 (329)
Q Consensus 117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~-~~~~d~f~V~ 163 (329)
+.+.+..+|+||.+++++..|+++|+||.+....-. + +.....|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 478889999999999999999999999998865543 2 3334445543
No 148
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.45 E-value=0.2 Score=36.23 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=43.5
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
+.+..+|+||-|+.+...|+.+|+||.+-......+ ...-.|||.- +|.. . ....+.+-+.|.+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~--~~~~-~-~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF--EGHI-D-DPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ECCC-C-CHHHHHHHHHHHH
Confidence 345568999999999999999999999886665443 5566788875 2431 1 2344444444444
No 149
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.40 E-value=1.5 Score=42.57 Aligned_cols=106 Identities=13% Similarity=0.170 Sum_probs=67.5
Q ss_pred CeEEEEEE---eCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194 115 EHTSIEFT---GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (329)
Q Consensus 115 ~~~~i~v~---~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (329)
+...|.|. ..+++|+++++..+|+++|++|....... ......|.|.. +..+++.+.|.+.+..
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~--s~~~Is~~V~~----------~d~~~a~~~L~~~~~~- 325 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP--SETSISLTVDE----------TDADEAVRALKDQSGA- 325 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC--CCceEEEEEeH----------HHHHHHHHHHHHHHHh-
Confidence 45567777 46789999999999999999997443221 11223455532 1233334444442211
Q ss_pred CCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC---CCcchHHHH
Q 020194 192 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFDI 268 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~---DrpGLL~~I 268 (329)
.. . ..+.++ .+.+++.|.+. ++||+++++
T Consensus 326 ~~-------~--------------------------------------~~i~~~---~~~a~IsvVG~~~~~~~g~~a~i 357 (401)
T TIGR00656 326 AG-------L--------------------------------------DRVEVE---EGLAKVSIVGAGMVGAPGVASEI 357 (401)
T ss_pred cC-------C--------------------------------------ceEEEe---CCeEEEEEECCCcccCccHHHHH
Confidence 00 0 112222 25677888874 799999999
Q ss_pred HHHHhcCCeEEEE
Q 020194 269 VCTLTDMQYVVFH 281 (329)
Q Consensus 269 ~~~l~~~~i~I~~ 281 (329)
.++|++.||+|..
T Consensus 358 ~~~L~~~gIni~~ 370 (401)
T TIGR00656 358 FSALEEKNINILM 370 (401)
T ss_pred HHHHHHCCCcEEE
Confidence 9999999999985
No 150
>PRK08210 aspartate kinase I; Reviewed
Probab=95.37 E-value=0.84 Score=44.42 Aligned_cols=99 Identities=18% Similarity=0.266 Sum_probs=64.6
Q ss_pred CeEEEEEEecCC-ccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCc
Q 020194 26 DATVIKVDSVNK-HGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL 104 (329)
Q Consensus 26 ~~~~v~v~~~Dr-~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~ 104 (329)
+...|+|...+. +|.++++..+|+.+|+||.-...+. . . -+|.+... ..+.+.+.|.... .
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~-~-~--is~~v~~~---------~~~~a~~~l~~~~-~---- 331 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP-T-E--VVFTVSDE---------DSEKAKEILENLG-L---- 331 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC-c-e--EEEEEcHH---------HHHHHHHHHHHhC-C----
Confidence 455667766555 9999999999999999999664332 2 1 23554321 1122233333321 0
Q ss_pred ceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEE
Q 020194 105 RSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN 146 (329)
Q Consensus 105 ~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~ 146 (329)
.+ ....+...|.|.|. ++||+++++..+|++.|+||..
T Consensus 332 --~v--~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 332 --KP--SVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred --cE--EEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 11 12335667777775 7899999999999999999974
No 151
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.34 E-value=0.055 Score=38.24 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=29.1
Q ss_pred CCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEE
Q 020194 260 DRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYI 297 (329)
Q Consensus 260 DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v 297 (329)
|+||.|.+|+..|...|++|++..+..-. +...=++-+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v 40 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV 40 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE
Confidence 78999999999999999999999998733 344444433
No 152
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.12 E-value=0.12 Score=37.72 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=35.8
Q ss_pred EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC-eEEEEEEEEeCCC
Q 020194 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDG 302 (329)
Q Consensus 254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~-~~~D~F~v~~~~g 302 (329)
|-+..+|+||-|+++...|+.+|||+.+..-.-... .-+=.||| |.+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence 444558999999999999999999999877554433 34557777 4446
No 153
>PRK06291 aspartate kinase; Provisional
Probab=95.08 E-value=1.1 Score=44.59 Aligned_cols=108 Identities=11% Similarity=0.178 Sum_probs=70.1
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194 26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (329)
Q Consensus 26 ~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~ 102 (329)
+...|++.+. +.+|+++++..+|+++|++|.-....+.. . -..|.|...+- ++..+.|++.+.....
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse-~-sIsf~V~~~d~-----~~av~~L~~~~~~~~~--- 389 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE-S-NISLVVDEADL-----EKALKALRREFGEGLV--- 389 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC-c-eEEEEEeHHHH-----HHHHHHHHHHHHHhcC---
Confidence 4567777754 67999999999999999999854333322 1 12365543211 2344455555543110
Q ss_pred CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEE
Q 020194 103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE 148 (329)
Q Consensus 103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~ 148 (329)
.. .....+...|.|.|. +++|+.+++..+|+..|+||..-.
T Consensus 390 ---~~--i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 390 ---RD--VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS 433 (465)
T ss_pred ---cc--eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence 00 122335677888886 689999999999999999998433
No 154
>PRK06635 aspartate kinase; Reviewed
Probab=95.04 E-value=0.34 Score=47.07 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=67.1
Q ss_pred EEEEE-eCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCCcc
Q 020194 118 SIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFR 195 (329)
Q Consensus 118 ~i~v~-~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~ 195 (329)
.|++. ..++||+++++..+|+++|+||.........+ ...-.|.|.. +..++..+.|.+ +..+..
T Consensus 264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~~~-- 330 (404)
T PRK06635 264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDEIG-- 330 (404)
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHHcC--
Confidence 34433 46789999999999999999999543332222 3444555542 222333344443 211111
Q ss_pred cccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEe---CCCcchHHHHHHHH
Q 020194 196 KAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRS---KDRPKLLFDIVCTL 272 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a---~DrpGLL~~I~~~l 272 (329)
+ ..|.+. .+.++++|.+ .++||++++|.++|
T Consensus 331 -----~--------------------------------------~~i~~~---~~ia~isvvG~~~~~~~g~~a~i~~~L 364 (404)
T PRK06635 331 -----A--------------------------------------ESVTYD---DDIAKVSVVGVGMRSHPGVAAKMFEAL 364 (404)
T ss_pred -----c--------------------------------------ceEEEc---CCeEEEEEECCCCCCCchHHHHHHHHH
Confidence 0 112222 2567788866 68999999999999
Q ss_pred hcCCeEEEEEE
Q 020194 273 TDMQYVVFHGM 283 (329)
Q Consensus 273 ~~~~i~I~~a~ 283 (329)
++.|++|....
T Consensus 365 a~~~Ini~~i~ 375 (404)
T PRK06635 365 AEEGINIQMIS 375 (404)
T ss_pred HHCCCCEEEEE
Confidence 99999998853
No 155
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.95 E-value=0.21 Score=35.60 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=40.1
Q ss_pred EEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 120 EFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 120 ~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
.|.-+|+||-|.+++..++. |.||...+-...+-....+++.-. ..+++..+++.+.|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie------~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ------VPDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 57789999999999999999 999987755543322233333322 1124566777777665
No 156
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.91 E-value=0.15 Score=37.22 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=37.6
Q ss_pred EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCC
Q 020194 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLP 304 (329)
Q Consensus 254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~ 304 (329)
|-+..+|+||-|+++-..|+.+|+|+.+..-...+ ..-+=.|||. .+|+.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id-~e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVD-CECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcCH
Confidence 34455899999999999999999999988866543 3455677774 44654
No 157
>PRK09034 aspartate kinase; Reviewed
Probab=94.88 E-value=0.97 Score=44.80 Aligned_cols=138 Identities=13% Similarity=0.136 Sum_probs=80.1
Q ss_pred CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194 26 DATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (329)
Q Consensus 26 ~~~~v~v~~---~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~ 102 (329)
+.+.|++.+ .+++|+++++..+|+.+|+||.-. +.+. .-..|.|...+-. ...+..+...|.....
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~-~sis~~v~~~~~~----~a~~~~l~~el~~~~~--- 375 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGI-DDLSIIIRERQLT----PKKEDEILAEIKQELN--- 375 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCC-cEEEEEEeHHHhh----HHHHHHHHHHHHHhhC---
Confidence 345666663 668899999999999999999864 2222 2235766543211 1111233333332211
Q ss_pred CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHH
Q 020194 103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLST 179 (329)
Q Consensus 103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~ 179 (329)
... .....+...|.+.|. +.+|+++++..+|+++|+||......+. .....|.|.. +..++
T Consensus 376 --~~~--I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S--e~~Is~vV~~----------~d~~~ 439 (454)
T PRK09034 376 --PDE--LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS--EISIMFGVKN----------EDAEK 439 (454)
T ss_pred --Cce--EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC--cceEEEEEcH----------HHHHH
Confidence 000 122345677888654 7899999999999999999985544332 2233455543 22344
Q ss_pred HHHHHHHHHcC
Q 020194 180 IKELLFNVLRG 190 (329)
Q Consensus 180 l~~~L~~~L~~ 190 (329)
..+.|++.+-+
T Consensus 440 av~~LH~~f~~ 450 (454)
T PRK09034 440 AVKAIYNAFFK 450 (454)
T ss_pred HHHHHHHHHhc
Confidence 45566665543
No 158
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.85 E-value=0.23 Score=51.85 Aligned_cols=72 Identities=21% Similarity=0.143 Sum_probs=52.4
Q ss_pred EEEEc-CC-CCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHH
Q 020194 242 VTVLN-IE-KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIRHVDGLPISSEAERERVIQC 317 (329)
Q Consensus 242 v~i~~-~~-~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v~~~~g~~l~~~~~~~~l~~~ 317 (329)
|.|+. .+ ...+.|.|.+.||+|||.+|+.++++.++||..+.+.+.. ..+.-.|-|. +.+.+.+..|...
T Consensus 655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie------V~~~~~L~~l~~~ 728 (743)
T PRK10872 655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE------IYNLQVLGRVLGK 728 (743)
T ss_pred eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE------ECCHHHHHHHHHH
Confidence 45544 22 3557899999999999999999999999999999988753 4455555443 1234567777777
Q ss_pred HH
Q 020194 318 LE 319 (329)
Q Consensus 318 L~ 319 (329)
|+
T Consensus 729 L~ 730 (743)
T PRK10872 729 LN 730 (743)
T ss_pred Hh
Confidence 65
No 159
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=94.85 E-value=0.11 Score=43.72 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=35.1
Q ss_pred EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCC-EEE
Q 020194 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGG-WFM 68 (329)
Q Consensus 29 ~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g-~~~ 68 (329)
-+++.+.|+||.|.+++++++++|.||..|+.+. .+| ..+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~ 45 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKAL 45 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEE
Confidence 4788999999999999999999999999999997 555 444
No 160
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.77 E-value=0.25 Score=35.78 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=41.5
Q ss_pred EEeCCCcchHHHHHHHHhcCCeEEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 256 MRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 256 v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~-g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
+..+|+||-|++|...|+++|+||.+..-.-. +....=.|||.=. |.. .+ ...+.+.+.|..
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~-~~~-~~-~~~~~~l~~l~~ 66 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE-GHI-DD-PDVKEALEELKR 66 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE-CCC-CC-HHHHHHHHHHHH
Confidence 44579999999999999999999999864433 3356667777533 531 22 234445555443
No 161
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.72 E-value=0.41 Score=36.38 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=48.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (329)
..+.+.+..+|+||-|+++...|+.+|+|+.+-...... ..+.-.|||.- +|. . + ..++.+-+.|.+.|
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~-~-~-~~~~~~l~~L~~~~ 82 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK-S-A-PALDPIIKSLRNDI 82 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC-C-C-HHHHHHHHHHHHHh
Confidence 346677777999999999999999999999877776653 45567888875 343 1 3 34444444455444
No 162
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.40 E-value=0.021 Score=42.89 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=43.2
Q ss_pred EEEEEeCC-CcchHHHHHHHHhcCCeEEEEEEEE-----ecC----CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 020194 253 VITMRSKD-RPKLLFDIVCTLTDMQYVVFHGMVN-----TGR----TEAYQEFYIRHVDGLPISSEAERERVIQCLEAA 321 (329)
Q Consensus 253 ~l~v~a~D-rpGLL~~I~~~l~~~~i~I~~a~I~-----T~g----~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~ 321 (329)
+++|.+.| ++|+++.|+++|+++|+||...+=- ..+ .+..-.|.|+.+ + .+ .+.|+++|.+.
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~---~-~~---~~~lr~~L~~l 72 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ---P-AD---LEALRAALLEL 72 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC---C-CC---HHHHHHHHHHH
Confidence 47889999 9999999999999999999765532 111 245667888743 3 22 35566665543
No 163
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.24 E-value=0.36 Score=50.28 Aligned_cols=72 Identities=4% Similarity=-0.053 Sum_probs=52.0
Q ss_pred EEEEc--CCCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC-eEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Q 020194 242 VTVLN--IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCL 318 (329)
Q Consensus 242 v~i~~--~~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~-~~~D~F~v~~~~g~~l~~~~~~~~l~~~L 318 (329)
|.++. .....+.|.|.+.||+|+|.+|+.++++.++||.++.+.+..+ .+.-.|-|.= .+.+.+..|...|
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L 688 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI 688 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence 45544 2235678999999999999999999999999999999887753 4444444421 2235667777766
Q ss_pred H
Q 020194 319 E 319 (329)
Q Consensus 319 ~ 319 (329)
+
T Consensus 689 r 689 (702)
T PRK11092 689 R 689 (702)
T ss_pred h
Confidence 5
No 164
>PRK06291 aspartate kinase; Provisional
Probab=94.11 E-value=4.3 Score=40.38 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=70.5
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194 114 EEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (329)
Q Consensus 114 ~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (329)
.+...|.|.+. +.+|+++++..+|+++|++|......+ ....-.|.|.. +..++..+.|.+.+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se~sIsf~V~~----------~d~~~av~~L~~~~~~ 386 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS--SESNISLVVDE----------ADLEKALKALRREFGE 386 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CCceEEEEEeH----------HHHHHHHHHHHHHHHH
Confidence 34567777764 689999999999999999998643333 22333455543 1223333444443322
Q ss_pred CCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC---CCcchHHH
Q 020194 191 YDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFD 267 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~---DrpGLL~~ 267 (329)
.. . ..|++. .+..++.|.+. +++|++.+
T Consensus 387 ~~--------~--------------------------------------~~i~~~---~~~a~IsvvG~gm~~~~gv~~r 417 (465)
T PRK06291 387 GL--------V--------------------------------------RDVTFD---KDVCVVAVVGAGMAGTPGVAGR 417 (465)
T ss_pred hc--------C--------------------------------------cceEEe---CCEEEEEEEcCCccCCcChHHH
Confidence 10 0 112222 25677888875 79999999
Q ss_pred HHHHHhcCCeEEEEEE
Q 020194 268 IVCTLTDMQYVVFHGM 283 (329)
Q Consensus 268 I~~~l~~~~i~I~~a~ 283 (329)
+..+|++.||+|....
T Consensus 418 if~aL~~~~I~v~~is 433 (465)
T PRK06291 418 IFSALGESGINIKMIS 433 (465)
T ss_pred HHHHHHHCCCCEEEEE
Confidence 9999999999998554
No 165
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=93.86 E-value=0.51 Score=49.14 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=51.3
Q ss_pred EEEEc--CCCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Q 020194 242 VTVLN--IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCL 318 (329)
Q Consensus 242 v~i~~--~~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L 318 (329)
|.++. .....+.|.|.+.||+|+|.+|+.++++.++||.+..+.+.. +.+.-.|-|. +.+.+.+..|...|
T Consensus 599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~ii~~L 672 (683)
T TIGR00691 599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE------IKNYKHLLKIMLKI 672 (683)
T ss_pred EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE------ECCHHHHHHHHHHH
Confidence 44543 223567899999999999999999999999999999998874 3433333332 12235667777766
Q ss_pred H
Q 020194 319 E 319 (329)
Q Consensus 319 ~ 319 (329)
.
T Consensus 673 ~ 673 (683)
T TIGR00691 673 K 673 (683)
T ss_pred h
Confidence 5
No 166
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.64 E-value=0.49 Score=49.48 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=48.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
-...|.|.+.||+|+|++|+.+++..++||.+..+.+.. +.+...|.|.- .+.+.+.+|-..|++
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~~ 731 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLNQ 731 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHhc
Confidence 345788999999999999999999999999999987753 44445555543 123566666666554
No 167
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.50 E-value=0.44 Score=49.69 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=47.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
...|.|.+.||+|+|++|+.+++..++||.+....+..+ .+...|.|.- .+.+.+.+|-..|++
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 457889999999999999999999999999999877654 4344454543 123556666555553
No 168
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=93.49 E-value=0.5 Score=34.32 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=36.7
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (329)
Q Consensus 119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~ 164 (329)
+.+..+|+||-|+++...|+.+|+|+..-...... ....-.|||.-
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 45556899999999999999999998877666654 34567788875
No 169
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.46 E-value=3.6 Score=43.92 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=72.0
Q ss_pred CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCC
Q 020194 25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA 101 (329)
Q Consensus 25 ~~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~ 101 (329)
.+...|+|.+. .++|+++++..+|+++|++|.-....+ +... .+|.|...+. ....+.|.+.+..+....
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~s-Isf~V~~~d~-----~~av~~L~~~f~~el~~~ 385 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYS-ISFCVPQSDA-----AKAKRALEEEFALELKEG 385 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCce-EEEEEeHHHH-----HHHHHHHHHHHHHHhccC
Confidence 35667888754 678999999999999999997544332 2222 2466644221 223444554443221100
Q ss_pred CCcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEE
Q 020194 102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEI 149 (329)
Q Consensus 102 ~~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i 149 (329)
. ... +....+...|.|.|. +++|+.+++..+|.+.|+||.....
T Consensus 386 ~--~~~--i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isq 432 (819)
T PRK09436 386 L--LEP--LEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQ 432 (819)
T ss_pred C--cce--EEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 0 001 122346778888876 6899999999999999999985543
No 170
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.43 E-value=0.4 Score=38.21 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=39.8
Q ss_pred eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCe-EEEEEEEEeCCCCC
Q 020194 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE-AYQEFYIRHVDGLP 304 (329)
Q Consensus 251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~-~~D~F~v~~~~g~~ 304 (329)
.|.|-+..+|+||-|+++-..|+.+|||+.+..-...+.. -+=.||| |.+|..
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~ 94 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR 94 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence 4666666699999999999999999999998886655444 3446666 444543
No 171
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=93.40 E-value=0.31 Score=34.48 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=35.6
Q ss_pred CCeEEEEEEeC----CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194 114 EEHTSIEFTGT----DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (329)
Q Consensus 114 ~~~~~i~v~~~----Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~ 164 (329)
.+...|.|.++ |.||++++++..|++.|++|.... | ...+.+.|..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~ 53 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE 53 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence 35677888888 799999999999999999998665 3 3456677764
No 172
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=93.34 E-value=0.31 Score=34.50 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=36.2
Q ss_pred CeEEEEEEeC----CCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194 250 DYTVITMRSK----DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300 (329)
Q Consensus 250 ~~t~l~v~a~----DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~ 300 (329)
.+..|.|.++ |.||+++.++..|++.||+|.... | .-.|.|.|...
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~~ 54 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKEE 54 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEGG
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeHH
Confidence 5677888877 899999999999999999998776 3 45566777544
No 173
>PRK11899 prephenate dehydratase; Provisional
Probab=93.13 E-value=0.56 Score=43.36 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=41.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCC
Q 020194 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLP 304 (329)
Q Consensus 251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~ 304 (329)
.|.|-+..+|+||.||++..+|+++|||+.+..-.-.+ ..-+=.||| |.+|+.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCC
Confidence 57777777899999999999999999999988866444 445667887 455754
No 174
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=93.11 E-value=0.6 Score=48.28 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=50.8
Q ss_pred EEEEc-C-CCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEE-EEEEEeCCCCCCCCHHHHHHHHHHH
Q 020194 242 VTVLN-I-EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQ-EFYIRHVDGLPISSEAERERVIQCL 318 (329)
Q Consensus 242 v~i~~-~-~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D-~F~v~~~~g~~l~~~~~~~~l~~~L 318 (329)
|.++. . ....+-|.|.+.||+|||.+|+++|+..++||......+.+.+... .|-+. +.+...+..|...|
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~l 689 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLARL 689 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHHH
Confidence 44554 2 4577889999999999999999999999999999998876544333 33221 12234566666665
Q ss_pred H
Q 020194 319 E 319 (329)
Q Consensus 319 ~ 319 (329)
.
T Consensus 690 ~ 690 (701)
T COG0317 690 K 690 (701)
T ss_pred h
Confidence 4
No 175
>PRK08210 aspartate kinase I; Reviewed
Probab=93.07 E-value=7.2 Score=37.90 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=68.7
Q ss_pred CeEEEEEEeCCC-ccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Q 020194 115 EHTSIEFTGTDR-PGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD 193 (329)
Q Consensus 115 ~~~~i~v~~~Dr-~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~ 193 (329)
+-..|+|.+.+. +|.+++|..+|+++|+||...... .. .-.|.+.. +..+++.+.|.+ + + ..
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~--~is~~v~~----------~~~~~a~~~l~~-~-~-~~ 332 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PT--EVVFTVSD----------EDSEKAKEILEN-L-G-LK 332 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--Cc--eEEEEEcH----------HHHHHHHHHHHH-h-C-Cc
Confidence 344566665554 999999999999999999876333 11 23455432 122333333333 1 0 00
Q ss_pred cccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC---CCcchHHHHHH
Q 020194 194 FRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFDIVC 270 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~---DrpGLL~~I~~ 270 (329)
+.+. .+..++.|.+. ++||++.++.+
T Consensus 333 ------------------------------------------------v~~~---~~~a~isvvG~~~~~~~g~~~~i~~ 361 (403)
T PRK08210 333 ------------------------------------------------PSVR---ENCAKVSIVGAGMAGVPGVMAKIVT 361 (403)
T ss_pred ------------------------------------------------EEEe---CCcEEEEEEcCCcCCCccHHHHHHH
Confidence 1111 24566777764 89999999999
Q ss_pred HHhcCCeEEEEEEEEecCCeEEEEEEEE
Q 020194 271 TLTDMQYVVFHGMVNTGRTEAYQEFYIR 298 (329)
Q Consensus 271 ~l~~~~i~I~~a~I~T~g~~~~D~F~v~ 298 (329)
+|++.||+|.. +.| ....=.|.|.
T Consensus 362 aL~~~~I~i~~--~~~--s~~~is~vv~ 385 (403)
T PRK08210 362 ALSEEGIEILQ--SAD--SHTTIWVLVK 385 (403)
T ss_pred HHHhCCCCEEE--Eec--CCCEEEEEEc
Confidence 99999999974 444 2233345553
No 176
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=93.04 E-value=5.6 Score=39.20 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=65.6
Q ss_pred CeEEEEEEecCC--ccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCC
Q 020194 26 DATVIKVDSVNK--HGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS 103 (329)
Q Consensus 26 ~~~~v~v~~~Dr--~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~ 103 (329)
+...|+|.+.+- +|.++++..+|+.+|++|.-....+.. .. ..|.|...+. ++..+.|.. +.....
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~~-----~~a~~~L~~-~~~~~~---- 368 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKEDA-----DQAKTLLKS-ELNLSA---- 368 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHHH-----HHHHHHHHH-HHHhcC----
Confidence 455666665433 699999999999999999865432322 22 2466544221 122222222 111110
Q ss_pred cceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEE
Q 020194 104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE 148 (329)
Q Consensus 104 ~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~ 148 (329)
.. ......+...|.+.|. +.||+++++..+|+.+|+||....
T Consensus 369 -~~--~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 369 -LS--SVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred -cc--eEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 00 1123346777888654 789999999999999999997554
No 177
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.04 E-value=0.73 Score=33.61 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=37.3
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (329)
Q Consensus 119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~ 164 (329)
+.+..+|+||-|+++...|+.+|+|+..-...... ..+.-.|||.-
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 45556899999999999999999999877777643 45667888875
No 178
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.03 E-value=0.83 Score=32.40 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=39.5
Q ss_pred EEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 255 TMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 255 ~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
.|.-+||||=|..++++++. |.||....-.-.+.....++..-.- .+++..+.+.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~-----~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV-----PDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 56779999999999999999 9999877654433222223322221 124567777777654
No 179
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=93.02 E-value=7.4 Score=38.51 Aligned_cols=120 Identities=15% Similarity=0.201 Sum_probs=73.9
Q ss_pred CCeEEEEEEecC---CccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCC
Q 020194 25 ADATVIKVDSVN---KHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA 101 (329)
Q Consensus 25 ~~~~~v~v~~~D---r~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~ 101 (329)
.+.+.|++.+.. ++|..+++.++|+.+|+||.--........ .+|.|...+. ....+.+++.+.....
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-- 375 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-- 375 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence 455666666443 459999999999999999974433322222 3576643322 2344444444433221
Q ss_pred CCcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194 102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (329)
Q Consensus 102 ~~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~ 164 (329)
......+.-.|.+.|. ..||..+++..+|++.|+||.... + ....-.|.|..
T Consensus 376 -------~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--s--Se~~Is~vV~~ 430 (447)
T COG0527 376 -------EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--S--SEISISFVVDE 430 (447)
T ss_pred -------eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE--c--CCceEEEEEcc
Confidence 1122335566777754 678999999999999999998666 2 23445566643
No 180
>PRK09034 aspartate kinase; Reviewed
Probab=92.94 E-value=8.1 Score=38.28 Aligned_cols=122 Identities=14% Similarity=0.152 Sum_probs=72.5
Q ss_pred CeEEEEEEe---CCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194 115 EHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (329)
Q Consensus 115 ~~~~i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (329)
+-+.|++.+ .+++|++++|...|+++|++|... + .+...-.|.|... . +. ...+..+...|...+
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~-ss~~sis~~v~~~---~-~~-~a~~~~l~~el~~~~--- 374 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---P-SGIDDLSIIIRER---Q-LT-PKKEDEILAEIKQEL--- 374 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---c-CCCcEEEEEEeHH---H-hh-HHHHHHHHHHHHHhh---
Confidence 345666664 568999999999999999999865 2 2333455666541 1 10 000022222222111
Q ss_pred CCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEe---CCCcchHHHH
Q 020194 192 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRS---KDRPKLLFDI 268 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a---~DrpGLL~~I 268 (329)
. . ..|.+. .+..++.|.+ .++||++.++
T Consensus 375 -~-------~--------------------------------------~~I~~~---~~va~VsivG~g~~~~~gv~ari 405 (454)
T PRK09034 375 -N-------P--------------------------------------DELEIE---HDLAIIMVVGEGMRQTVGVAAKI 405 (454)
T ss_pred -C-------C--------------------------------------ceEEEe---CCEEEEEEECCCCCCCccHHHHH
Confidence 1 0 112222 2557777765 3799999999
Q ss_pred HHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194 269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299 (329)
Q Consensus 269 ~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~ 299 (329)
..+|++.||+|....-.+. ...=.|.|.+
T Consensus 406 f~aL~~~~InV~mIsq~~S--e~~Is~vV~~ 434 (454)
T PRK09034 406 TKALAEANINIQMINQGSS--EISIMFGVKN 434 (454)
T ss_pred HHHHHHCCCCEEEEEecCC--cceEEEEEcH
Confidence 9999999999988754331 2333455543
No 181
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=92.86 E-value=0.57 Score=41.33 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=40.8
Q ss_pred cCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEE
Q 020194 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHV 162 (329)
Q Consensus 111 ~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V 162 (329)
+-......+.+.-.|+||.+..++..|.++|+||-..++.... +.+.-+.-+
T Consensus 143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 3444566778888999999999999999999999999998753 444444443
No 182
>PRK09181 aspartate kinase; Validated
Probab=92.66 E-value=7.1 Score=38.97 Aligned_cols=104 Identities=16% Similarity=0.230 Sum_probs=65.4
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194 26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (329)
Q Consensus 26 ~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~ 102 (329)
+.+.|+|.+. +.+|+.+++..+|+++|++|. -+.+.. .-..|.|... ... ..+..+.|++.+...
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~-~~~--~~~~~~~L~~~~~~~----- 395 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS-LKT--LKRVIAELEKRYPNA----- 395 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC-hHH--HHHHHHHHHHhcCCc-----
Confidence 4566677543 678999999999999999998 223322 2224665332 100 012223333222111
Q ss_pred CcceeeeecCCCCeEEEEEEeCC--CccHHHHHHHHHHhCCCcEEEEE
Q 020194 103 SLRSSVGVMPTEEHTSIEFTGTD--RPGLFSEVCAVLADLHCNVVNAE 148 (329)
Q Consensus 103 ~~~~~v~~~~~~~~~~i~v~~~D--r~Gll~~i~~~l~~~g~~I~~A~ 148 (329)
.+ . ..+...|.++|.. +||+.+++..+|++.|+||..-.
T Consensus 396 ----~i--~-~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~ 436 (475)
T PRK09181 396 ----EV--T-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH 436 (475)
T ss_pred ----eE--E-ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence 11 1 1467788888765 89999999999999999987433
No 183
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.62 E-value=0.7 Score=48.18 Aligned_cols=65 Identities=22% Similarity=0.230 Sum_probs=47.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
-...|.|.+.||+|+|++|+.+++..++||.+..+.+.. +.+...|.|.- .+-.++..|-..|++
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT 674 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 356788999999999999999999999999999998764 44444444443 123455655555543
No 184
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.33 E-value=7.9 Score=41.39 Aligned_cols=114 Identities=13% Similarity=0.078 Sum_probs=73.3
Q ss_pred CCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194 113 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (329)
Q Consensus 113 ~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (329)
..+...|.|.+. .++|+++++..+|+++|++|......+ ......|.|.. +..++....|.+.+.
T Consensus 312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~sIsf~V~~----------~d~~~av~~L~~~f~ 379 (819)
T PRK09436 312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYSISFCVPQ----------SDAAKAKRALEEEFA 379 (819)
T ss_pred eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCceEEEEEeH----------HHHHHHHHHHHHHHH
Confidence 345667888765 678999999999999999997554333 22334455543 122333344444332
Q ss_pred CCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC---CCcchHH
Q 020194 190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLF 266 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~---DrpGLL~ 266 (329)
.+.. . .+ ...|++. .+..++.|.+. ++||++.
T Consensus 380 ~el~-------~---------~~--------------------------~~~i~~~---~~valIsvvG~gm~~~~gv~a 414 (819)
T PRK09436 380 LELK-------E---------GL--------------------------LEPLEVE---ENLAIISVVGDGMRTHPGIAA 414 (819)
T ss_pred HHhc-------c---------CC--------------------------cceEEEe---CCEEEEEEEccCcccCcCHHH
Confidence 1111 0 00 0123333 36788888875 7999999
Q ss_pred HHHHHHhcCCeEEEEEE
Q 020194 267 DIVCTLTDMQYVVFHGM 283 (329)
Q Consensus 267 ~I~~~l~~~~i~I~~a~ 283 (329)
++..+|.+.||+|....
T Consensus 415 rif~aL~~~~InI~~Is 431 (819)
T PRK09436 415 KFFSALGRANINIVAIA 431 (819)
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 99999999999998764
No 185
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.28 E-value=1.5 Score=32.64 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=37.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
++.|.-+|+||-|++++.+|+ +.||....-.... +.....+.+..+ +. ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~--~~----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA--NG----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC--Cc----HHHHHHHHHHHHH
Confidence 577889999999999999999 6666644433322 333333333321 10 3556777777665
No 186
>PLN02551 aspartokinase
Probab=92.07 E-value=12 Score=37.92 Aligned_cols=139 Identities=13% Similarity=0.125 Sum_probs=79.5
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194 26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (329)
Q Consensus 26 ~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~ 102 (329)
+.+.|+|.+. +.+|.++++...|+.+|++|.--. +.. .-..|.+...+-.. .+.+.+.++..+.....
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe--~sIs~~v~~~~~~~--~~~i~~~l~~l~~el~~--- 435 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSE--VSISLTLDPSKLWS--RELIQQELDHLVEELEK--- 435 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccC--CEEEEEEehhHhhh--hhhHHHHHHHHHHHhhc---
Confidence 4567777655 589999999999999999998552 222 22346654432111 01111122222111100
Q ss_pred CcceeeeecCCCCeEEEEEEeC--CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHH
Q 020194 103 SLRSSVGVMPTEEHTSIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180 (329)
Q Consensus 103 ~~~~~v~~~~~~~~~~i~v~~~--Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l 180 (329)
...+ .-..+...|.|.|. ..+|+++++..+|+..|+||..-...+ ......|.|.. +..++.
T Consensus 436 --~~~V--~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga--SeinIS~vV~~----------~d~~~A 499 (521)
T PLN02551 436 --IAVV--NLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA--SKVNISLIVND----------DEAEQC 499 (521)
T ss_pred --CCeE--EEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC--CCcEEEEEEeH----------HHHHHH
Confidence 0011 22345667777765 688999999999999999997544333 23334455543 233455
Q ss_pred HHHHHHHHc
Q 020194 181 KELLFNVLR 189 (329)
Q Consensus 181 ~~~L~~~L~ 189 (329)
-+.|++.+-
T Consensus 500 v~aLH~~Ff 508 (521)
T PLN02551 500 VRALHSAFF 508 (521)
T ss_pred HHHHHHHHh
Confidence 556666663
No 187
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=91.94 E-value=0.86 Score=41.96 Aligned_cols=54 Identities=11% Similarity=0.160 Sum_probs=43.2
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCC
Q 020194 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLP 304 (329)
Q Consensus 250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~ 304 (329)
..|.|-+..+|+||-|+++-..|+.+|||+.+..-.-.+ .--.=.||| |.+|+.
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~ 247 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHI 247 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCc
Confidence 578888888899999999999999999999988766444 445667777 555665
No 188
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=91.84 E-value=0.62 Score=39.24 Aligned_cols=46 Identities=15% Similarity=0.429 Sum_probs=37.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC--eEEEEEEEE
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND--RAAAVVHVT 163 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~--~~~d~f~V~ 163 (329)
-+.+.+.++||.|.++++.++.+|.||..++.+..++ .....|.+.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE 51 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE 51 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence 4678899999999999999999999999999998654 333444443
No 189
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=91.78 E-value=0.94 Score=46.87 Aligned_cols=45 Identities=31% Similarity=0.420 Sum_probs=38.8
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEE
Q 020194 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 158 (329)
Q Consensus 114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d 158 (329)
.-...|.|.+.||+|+|++|+.+|+..++||.+....+.++++..
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~ 669 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFAT 669 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEE
Confidence 456789999999999999999999999999999998886555443
No 190
>PRK11899 prephenate dehydratase; Provisional
Probab=91.75 E-value=1.4 Score=40.79 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=40.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~ 164 (329)
.+.+.+..+|+||.|+++...|+.+|+|+.+-...... +-+.-.|||.-
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~ 243 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI 243 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence 57777777999999999999999999999877777654 44566888875
No 191
>PRK06382 threonine dehydratase; Provisional
Probab=91.71 E-value=1.3 Score=43.15 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=47.5
Q ss_pred CCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe----c-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT----G-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 248 ~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T----~-g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
....+.+.|.-+|+||-|.+|++.|.++|+||.+..... . .+.+.=+|-|... +++..+.|.+.|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR------GQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence 557889999999999999999999999999998776531 1 2345555655432 13344566666554
No 192
>PRK06382 threonine dehydratase; Provisional
Probab=91.54 E-value=3.3 Score=40.38 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=47.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe----e-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT----H-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t----~-~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
...+.+.|.-+|+||-|++++..|.++|+||.+..... . .+...-+|.|... +++..+.|.+.|++
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE 398 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 35778999999999999999999999999998876642 2 2344555666431 23444566666654
No 193
>PRK06349 homoserine dehydrogenase; Provisional
Probab=91.43 E-value=0.96 Score=44.44 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=41.3
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300 (329)
Q Consensus 250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~ 300 (329)
..+.+.+...|+||.|.+|+.+|.+++++|.+..-....+.....+++++.
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~ 397 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE 397 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence 457888999999999999999999999999988654433345567778775
No 194
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=91.24 E-value=1.2 Score=39.25 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=38.6
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEE
Q 020194 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFN 72 (329)
Q Consensus 26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~ 72 (329)
....+.+.-.|+||...+++.+|.++|+||-..++.. .+|.++-...
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~ 195 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIE 195 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEE
Confidence 4456677779999999999999999999999999986 5677764333
No 195
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.90 E-value=0.51 Score=46.13 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=47.8
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHH
Q 020194 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQ 91 (329)
Q Consensus 26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie 91 (329)
....+.+.-+|+||.+++++.+|+++|+||...+..+.++.++-+|. .|+. + ++++.+.|+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie---~D~~-~-~~~~~~~i~ 397 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVID---VDAD-Y-AEEALDALK 397 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEE---eCCC-C-cHHHHHHHH
Confidence 56788889999999999999999999999999998888888875554 3443 2 244555555
No 196
>PRK09084 aspartate kinase III; Validated
Probab=90.82 E-value=12 Score=36.94 Aligned_cols=102 Identities=15% Similarity=0.212 Sum_probs=61.7
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194 26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (329)
Q Consensus 26 ~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~ 102 (329)
+...|+|.+. +.+|.++++..+|+++|+||.--. +.. .-.+|.|...+-..-....+.+.+.+.|....
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse--~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~---- 376 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE--VSVSLTLDTTGSTSTGDTLLTQALLTELSQLC---- 376 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC--cEEEEEEechhhhhhhhHHHHHHHHHHHhcCC----
Confidence 4567777654 688999999999999999998554 211 22346654422110000012233333333211
Q ss_pred CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCC
Q 020194 103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLH 141 (329)
Q Consensus 103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g 141 (329)
.+ .-..+...|.+.|. ++||+++++..+|+..+
T Consensus 377 ----~i--~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~n 412 (448)
T PRK09084 377 ----RV--EVEEGLALVALIGNNLSKACGVAKRVFGVLEPFN 412 (448)
T ss_pred ----eE--EEECCeEEEEEECCCcccCcChHHHHHHHHHhCC
Confidence 11 22346778888886 68999999999998743
No 197
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=90.80 E-value=0.3 Score=40.85 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=34.3
Q ss_pred EEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE
Q 020194 19 IDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS 61 (329)
Q Consensus 19 v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~ 61 (329)
+....+-+..++.....+.||+++.+++.++++||+|.++-..
T Consensus 87 vA~~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 87 VAPLLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred HHHhcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 3334455666777777889999999999999999999987653
No 198
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.79 E-value=0.6 Score=45.62 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=41.7
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEE
Q 020194 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI 297 (329)
Q Consensus 250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v 297 (329)
....|-+.-.|+||.+..|+.+|+++|+||...+....|+.+.-.|-+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~ 384 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV 384 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence 557777789999999999999999999999999999988777666644
No 199
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.46 E-value=3.7 Score=30.52 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=37.1
Q ss_pred EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T-~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
++.|.-+||||=|++++.+|+..+|+ ...-.- ..+.+.-.+-+.-.+| ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~~anI~--~~~y~~~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIGPRNIT--EFNYRYADEKDAHIFVGVSVANG-----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhCCCcee--EEEEEccCCCeeEEEEEEEeCCc-----HHHHHHHHHHHHH
Confidence 57788899999999999999955555 322221 1234444444443311 3456667666654
No 200
>PRK08818 prephenate dehydrogenase; Provisional
Probab=90.25 E-value=0.66 Score=44.65 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=38.7
Q ss_pred CeEEEEEEeC-CCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194 250 DYTVITMRSK-DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300 (329)
Q Consensus 250 ~~t~l~v~a~-DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~ 300 (329)
.++.|.+.-+ |+||-|++|+.+|+.+||||.+..+ .....-+-.|||.=.
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~ 344 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE 344 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence 5677777776 9999999999999999999999998 333333333888533
No 201
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.19 E-value=1.7 Score=34.55 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=39.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~ 164 (329)
.+.+.+..+|+||-|+++...|+.+|+|+..-...... ....-.|||.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 46666777999999999999999999999877777654 34456788865
No 202
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=89.60 E-value=0.98 Score=40.59 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=35.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeE
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA 156 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~ 156 (329)
...+|.+...|.||.+++|+++|++.|.||.+.-+.-.....
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~ 117 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKA 117 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhh
Confidence 456788889999999999999999999999998877544333
No 203
>PRK06545 prephenate dehydrogenase; Validated
Probab=89.10 E-value=1.8 Score=41.50 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=40.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEE
Q 020194 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163 (329)
Q Consensus 114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~ 163 (329)
...+.+.|.-+|+||-+++++..|...|+||.+.+|....+...-++.+.
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~ 337 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS 337 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence 46789999999999999999999999999999999976544443344443
No 204
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=88.95 E-value=2.1 Score=41.50 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=42.2
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE-ecCCeEEEEEEEEeCCCCC
Q 020194 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN-TGRTEAYQEFYIRHVDGLP 304 (329)
Q Consensus 250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~-T~g~~~~D~F~v~~~~g~~ 304 (329)
..|.|-+..+|+||.|+++-..|+..|||+.+..-. +.+..-+=.||| |.+|..
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~ 350 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANL 350 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCC
Confidence 356666777899999999999999999999988866 444556678888 455754
No 205
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=88.70 E-value=2.7 Score=38.76 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=47.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
..|.+.+..+|+||.|+++.+.|+.+|+|...-...... +-+.-.|||.- +|.. .+ ..++++|.+
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~~-~~----~~v~~AL~e 258 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGHI-DD----PLVKEALEE 258 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecCc-Cc----HhHHHHHHH
Confidence 478888888899999999999999999998776666655 44556788865 3443 33 345555554
No 206
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=88.62 E-value=16 Score=35.98 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=29.3
Q ss_pred CeEEEEEEe---CCCcchHHHHHHHHhcCCeEEEEEE
Q 020194 250 DYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGM 283 (329)
Q Consensus 250 ~~t~l~v~a---~DrpGLL~~I~~~l~~~~i~I~~a~ 283 (329)
+.+++.|.+ .++||++++|.++|++.||+|....
T Consensus 377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 567788865 4889999999999999999998775
No 207
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=88.39 E-value=1.9 Score=36.39 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=46.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (329)
.-.+.+.-.|.||.|+++++.|++.|+||.+..+.... +...-+-.+.. |. +...+++.+.|.+..
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g~----~~~~EQi~kQL~kLi 70 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---GD----EQVLEQIIKQLNKLI 70 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---CC----cchHHHHHHHHHhhc
Confidence 34678888999999999999999999999998887654 33333333333 21 245677777777633
No 208
>PLN02551 aspartokinase
Probab=88.34 E-value=31 Score=34.92 Aligned_cols=125 Identities=13% Similarity=0.149 Sum_probs=74.2
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194 114 EEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (329)
Q Consensus 114 ~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (329)
.+-+.|+|.+. +.+|+++++...|+++|++|... .+. ...-.|.+... .+ ...+.+++.+.+.+.+
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssS--e~sIs~~v~~~----~~---~~~~~i~~~l~~l~~e 432 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS--EVSISLTLDPS----KL---WSRELIQQELDHLVEE 432 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ecc--CCEEEEEEehh----Hh---hhhhhHHHHHHHHHHH
Confidence 34567777655 68999999999999999999865 232 23345666431 11 1123333333332211
Q ss_pred CCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC--CCcchHHHH
Q 020194 191 YDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK--DRPKLLFDI 268 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~--DrpGLL~~I 268 (329)
.. + + ..|.+. .+..+|.|.+. .+||++.++
T Consensus 433 -l~------------------~----------~----------------~~V~v~---~~vAiISvVG~~~~~~gvaari 464 (521)
T PLN02551 433 -LE------------------K----------I----------------AVVNLL---QGRSIISLIGNVQRSSLILEKV 464 (521)
T ss_pred -hh------------------c----------C----------------CeEEEe---CCEEEEEEEccCCCCccHHHHH
Confidence 10 0 0 112222 25566666653 689999999
Q ss_pred HHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194 269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299 (329)
Q Consensus 269 ~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~ 299 (329)
..+|++.||+|......+ ....=.|.|.+
T Consensus 465 F~aLa~~gInV~mIsqga--SeinIS~vV~~ 493 (521)
T PLN02551 465 FRVLRTNGVNVQMISQGA--SKVNISLIVND 493 (521)
T ss_pred HHHHHHCCCCeEEEEecC--CCcEEEEEEeH
Confidence 999999999998765433 23333455543
No 209
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.20 E-value=1.5 Score=41.93 Aligned_cols=49 Identities=10% Similarity=0.130 Sum_probs=40.3
Q ss_pred CCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEE
Q 020194 249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI 297 (329)
Q Consensus 249 ~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v 297 (329)
+.++-+.|.-+||||-|+.|+..|.+.||||.+.+|.-..+...-++.+
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~ 336 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI 336 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence 4678899999999999999999999999999999997555444333433
No 210
>PRK08818 prephenate dehydrogenase; Provisional
Probab=87.69 E-value=1.5 Score=42.34 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=37.9
Q ss_pred CeEEEEEEeC-CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194 115 EHTSIEFTGT-DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (329)
Q Consensus 115 ~~~~i~v~~~-Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~ 164 (329)
..+.+.+.-+ |+||.+++++..|+.+|+||.+-.+ .......-.|+|.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence 4667777776 9999999999999999999999888 32222333388865
No 211
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=87.50 E-value=7.2 Score=26.72 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=30.8
Q ss_pred EEEEEe---CCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEE
Q 020194 118 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163 (329)
Q Consensus 118 ~i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~ 163 (329)
.|.+.| ++.+|+++++.++|++.|+++......+ . ...-.|.|.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~-s-~~~is~~v~ 49 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS-S-ERNISAVID 49 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-c-ccEEEEEEe
Confidence 466666 4789999999999999999997554333 2 233445554
No 212
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=87.48 E-value=13 Score=35.72 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=44.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe---e--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT---H--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t---~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
....+.|.-+|+||.|++++..++++|.||.+-.-.. . .+.+.-.+.+... +++..+.|.+.|.+
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD 373 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 4568899999999999999999999999998875442 1 2333344444331 13455666666654
No 213
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.37 E-value=5.7 Score=28.86 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=31.9
Q ss_pred EEEEEE---eCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194 252 TVITMR---SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299 (329)
Q Consensus 252 t~l~v~---a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~ 299 (329)
+.|+|. ..++||++++|..+|++.||+|.... | ++ ..=.|-|..
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~ 48 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN 48 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec
Confidence 345552 47899999999999999999999884 3 23 344555544
No 214
>PRK08198 threonine dehydratase; Provisional
Probab=87.33 E-value=5.8 Score=38.57 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=34.2
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (329)
Q Consensus 113 ~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t 151 (329)
......+.|.-+|+||-|+++...++..|.||.+.....
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 345568999999999999999999999999999887654
No 215
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=87.07 E-value=6.2 Score=27.06 Aligned_cols=46 Identities=9% Similarity=0.092 Sum_probs=33.2
Q ss_pred EEEEEEe---CCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194 252 TVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299 (329)
Q Consensus 252 t~l~v~a---~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~ 299 (329)
.++.+.+ .+.||++++|.++|++.|+++....-.+. ...=.|.|..
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s--~~~is~~v~~ 50 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSS--ERNISAVIDE 50 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc--ccEEEEEEeH
Confidence 4566666 48899999999999999999988754432 2334465543
No 216
>PRK06349 homoserine dehydrogenase; Provisional
Probab=87.02 E-value=3.4 Score=40.62 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=41.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (329)
Q Consensus 114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~ 164 (329)
...+-|.+...|+||.|++|++.|.++|++|.+.......+....+++++.
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 356788999999999999999999999999998766554444556667776
No 217
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=86.45 E-value=8.8 Score=26.61 Aligned_cols=28 Identities=14% Similarity=0.470 Sum_probs=24.6
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCCcEE
Q 020194 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVV 145 (329)
Q Consensus 118 ~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~ 145 (329)
.|.+.|. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4677775 789999999999999999995
No 218
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=86.09 E-value=4.4 Score=39.32 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=40.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~ 164 (329)
..+.+.+..+|+||.|+++...|+.+|+|+..-...... +.+.-.|||.-
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~ 346 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV 346 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence 356677777899999999999999999998877777544 44677888875
No 219
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=86.05 E-value=30 Score=37.02 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=64.1
Q ss_pred CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194 26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (329)
Q Consensus 26 ~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~ 102 (329)
+.+.|++.+. +.+|.++++..+|+.+|++|.--...+. +. ...|.+... ....+.+.|..... .
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~-sis~~i~~~---------~~~~~~~~l~~~~~-~- 382 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQ-LLQLAYTSE---------VADSALKLLDDAAL-P- 382 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-Cc-EEEEEEeHH---------HHHHHHHHHHhhcC-C-
Confidence 4556777665 7788999999999999999975443322 22 223544321 11122222322110 0
Q ss_pred CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEE
Q 020194 103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN 146 (329)
Q Consensus 103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~ 146 (329)
..+ .-..+...|.|+|. .++|+.+++..+|.+.|+++..
T Consensus 383 ---~~i--~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~ 424 (810)
T PRK09466 383 ---GEL--KLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW 424 (810)
T ss_pred ---CcE--EEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence 111 22346778888885 5899999999999999999853
No 220
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=85.89 E-value=29 Score=37.44 Aligned_cols=103 Identities=11% Similarity=0.149 Sum_probs=62.4
Q ss_pred CeEEEEEE---ecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194 26 DATVIKVD---SVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (329)
Q Consensus 26 ~~~~v~v~---~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~ 102 (329)
+.+.|++. ..+.+|.++++...|+.+|+||.-- .+.. . -.+|.+.+.+.. . ..+..+.+...|....
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse-~-sis~~i~~~~~~-~-~~~~~~~l~~~l~~~~---- 390 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSE-T-NVTVSLDPSENL-V-NTDVLAALSADLSQIC---- 390 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCC-C-EEEEEEcccccc-c-hHHHHHHHHHHHhhcC----
Confidence 45566774 3468899999999999999999644 2222 1 123554332211 0 1123333333343211
Q ss_pred CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcE
Q 020194 103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNV 144 (329)
Q Consensus 103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I 144 (329)
.+. ...+...|.|+|. .++|+.+++..+|+..|+++
T Consensus 391 ----~i~--~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 391 ----RVK--IIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred ----cEE--EeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 111 1235678888886 78999999999999977654
No 221
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.70 E-value=8.3 Score=26.54 Aligned_cols=46 Identities=11% Similarity=0.054 Sum_probs=33.1
Q ss_pred EEEEEEeC---CCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194 252 TVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299 (329)
Q Consensus 252 t~l~v~a~---DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~ 299 (329)
.++.+.+. ++||+++++.++|++.|+++....-.+.+ ..=.|.+.+
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~ 50 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDE 50 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH
Confidence 45666664 78999999999999999999887654422 333455543
No 222
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=85.52 E-value=1.3 Score=39.83 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=35.2
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEE
Q 020194 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFM 68 (329)
Q Consensus 26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~ 68 (329)
....+.+..-|.||.+.+|+|+|+..|.||.+--+.-.....+
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~L 118 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKAL 118 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhh
Confidence 4567888889999999999999999999999887764333333
No 223
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=85.29 E-value=3.6 Score=34.69 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=33.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-ecC
Q 020194 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS-SDG 64 (329)
Q Consensus 27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~-t~~ 64 (329)
...+.+.-.|.||.++++++.|+..|+||.+-.+. |++
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~ 42 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTET 42 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCC
Confidence 45788899999999999999999999999988876 533
No 224
>PLN02317 arogenate dehydratase
Probab=85.03 E-value=4.9 Score=38.77 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=32.3
Q ss_pred eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC
Q 020194 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289 (329)
Q Consensus 251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~ 289 (329)
.|.|-+.-.|+||-|+++-.+|+.+|||+.+..-.-...
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~ 321 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRK 321 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCC
Confidence 466777778999999999999999999999887654433
No 225
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=84.94 E-value=8.6 Score=36.98 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=45.5
Q ss_pred CCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE---e--cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN---T--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 249 ~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~---T--~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
.....+.|.-+||||.|.++++.+++.|.||....-. . .-+.+.=.+-+.-. +++..+.|.+.|.+
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~------~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR------GKEHLDEILKILRD 373 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence 4556899999999999999999999999999877543 1 12344444544322 13455667776654
No 226
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.87 E-value=11 Score=27.32 Aligned_cols=56 Identities=9% Similarity=-0.008 Sum_probs=37.6
Q ss_pred CCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 259 KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 259 ~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
.+.||++++|.++|++.||+|.... + ++ ..=.|-|...+ .-+.+ +..++|.+.|..
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccch-HHHHHHHHHHHh
Confidence 5889999999999999999999884 3 33 33345554332 11332 356677777655
No 227
>PRK08198 threonine dehydratase; Provisional
Probab=84.59 E-value=9 Score=37.22 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=34.0
Q ss_pred CCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE
Q 020194 248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN 285 (329)
Q Consensus 248 ~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~ 285 (329)
......+.|.-+|+||-|.++...+++.|.||......
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 45667999999999999999999999999999888765
No 228
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.89 E-value=12 Score=25.79 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=27.0
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWT 151 (329)
Q Consensus 118 ~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t 151 (329)
.|.+.|. +++|+++++.++|++.|+++......+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4666665 689999999999999999997554433
No 229
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=83.53 E-value=10 Score=26.24 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=30.7
Q ss_pred EEEEEEeC---CCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEE
Q 020194 252 TVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR 298 (329)
Q Consensus 252 t~l~v~a~---DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~ 298 (329)
..+.|.+. +.||++.++..+|.+.|+++. .++| ....=.|.|.
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~--~~~~--Se~~is~~v~ 47 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL--QTAD--SHTTISCLVS 47 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE--EEEc--CccEEEEEEc
Confidence 35666664 899999999999999999995 3344 2333346553
No 230
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=83.32 E-value=7.2 Score=27.20 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=28.8
Q ss_pred eCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEE
Q 020194 123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVT 163 (329)
Q Consensus 123 ~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~ 163 (329)
.+|.+|.++++...|++.|++|.........+ .....|.+.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~ 50 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVP 50 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEec
Confidence 47899999999999999999998554332222 233445554
No 231
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.93 E-value=3.2 Score=41.95 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=38.7
Q ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEE
Q 020194 112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHV 162 (329)
Q Consensus 112 ~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V 162 (329)
-......+.+...|+||.++.++..|..+|+||...++.... +.+.-++-+
T Consensus 448 ~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 448 AKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred eeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 334556667777999999999999999999999999988643 444444433
No 232
>PRK08526 threonine dehydratase; Provisional
Probab=82.65 E-value=28 Score=33.90 Aligned_cols=66 Identities=17% Similarity=0.298 Sum_probs=46.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-----CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-----DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-----~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
.....+.|.-+|+||-|++++..+...+.||.+..-.... +.+...+-+.. .+++..++|.+.|.+
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET-------KGKEHQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999987665432 22222233322 135667777777654
No 233
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=81.89 E-value=9.6 Score=25.98 Aligned_cols=38 Identities=16% Similarity=0.027 Sum_probs=30.1
Q ss_pred CCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194 259 KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300 (329)
Q Consensus 259 ~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~ 300 (329)
.+++|+.++|.++|++.|+++.... | ++ ..=.|++...
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~~ 48 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDDS 48 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEehh
Confidence 5789999999999999999999883 3 23 5556777653
No 234
>PRK09181 aspartate kinase; Validated
Probab=81.70 E-value=35 Score=34.12 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=65.6
Q ss_pred CeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194 115 EHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (329)
Q Consensus 115 ~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (329)
+.+.|.|.+. +.+|+.++|..+|+++|++|. .+.+. .....|.|.. . ...++++.+.|.+.+..
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss--~~sis~~v~~----~----~~~~~~~~~~L~~~~~~- 394 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATN--ANTITHYLWG----S----LKTLKRVIAELEKRYPN- 394 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEec--CcEEEEEEcC----C----hHHHHHHHHHHHHhcCC-
Confidence 4566677544 689999999999999999997 23332 2334555543 1 12233333333322210
Q ss_pred CCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCC--CcchHHHHH
Q 020194 192 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKD--RPKLLFDIV 269 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~D--rpGLL~~I~ 269 (329)
..+.. ....++.|.+.. +||+..++.
T Consensus 395 ------------------------------------------------~~i~~----~~~a~VsvVG~gm~~~gv~ak~f 422 (475)
T PRK09181 395 ------------------------------------------------AEVTV----RKVAIVSAIGSNIAVPGVLAKAV 422 (475)
T ss_pred ------------------------------------------------ceEEE----CCceEEEEeCCCCCcccHHHHHH
Confidence 01111 245666676643 899999999
Q ss_pred HHHhcCCeEEEEEEE
Q 020194 270 CTLTDMQYVVFHGMV 284 (329)
Q Consensus 270 ~~l~~~~i~I~~a~I 284 (329)
.+|++.||+|....-
T Consensus 423 ~aL~~~~Ini~~i~q 437 (475)
T PRK09181 423 QALAEAGINVLALHQ 437 (475)
T ss_pred HHHHHCCCCeEEEEe
Confidence 999999999976543
No 235
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.42 E-value=16 Score=24.92 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=30.6
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEE
Q 020194 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163 (329)
Q Consensus 118 ~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~ 163 (329)
.|.+.|. +.+|+++++...|+++|+++.-....+. + ..-.|.+.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s-~-~~isf~i~ 49 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSS-E-YNISFVVA 49 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc-c-ceEEEEEe
Confidence 4566664 6789999999999999999975544332 2 23345554
No 236
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=80.42 E-value=13 Score=26.73 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=38.3
Q ss_pred EEEEEEe---CCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 252 TVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 252 t~l~v~a---~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
+.+.|.+ .+.||++++|..+|++.|+++...- +.+ ..=.|.|... ....+....++|.+.|..
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~--~~is~~v~~~--~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSE--VSVSLTLDPT--KNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCC--cEEEEEEEch--hhccchHHHHHHHHHHHh
Confidence 3455543 5789999999999999999997663 322 3334555432 222212244555555543
No 237
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=80.13 E-value=37 Score=33.10 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=44.1
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 113 ~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t-~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
+.....+.+.-+||||-|.+++..+...+.||..-+-.. .+-....++.... ..+++..++|.+.|.+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE------~~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIE------LNDKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 345678899999999999999997777888999655442 2222222322222 1124566777777765
No 238
>PRK12483 threonine dehydratase; Reviewed
Probab=79.85 E-value=59 Score=32.90 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=80.1
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHH-HHHHHHhccccC---
Q 020194 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVI-DYIQQRLETDAS--- 99 (329)
Q Consensus 25 ~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~-~~ie~~L~~~~~--- 99 (329)
.....+.|.-+||||-|.+++.+|... ||.+-.-.. ..+.+- +++..+..+ .+.. +.|.+.|....-
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~~-----~~~~~~~i~~~l~~~g~~~~ 414 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAH-LFVGVQTHP-----RHDPRAQLLASLRAQGFPVL 414 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeE-EEEEEEeCC-----hhhhHHHHHHHHHHCCCCeE
Confidence 356788999999999999999999988 887655443 223322 233223222 2233 666666754321
Q ss_pred -CCCC------cceeeeecC--CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCC
Q 020194 100 -FAPS------LRSSVGVMP--TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYA 170 (329)
Q Consensus 100 -~~~~------~~~~v~~~~--~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~ 170 (329)
+... .+..+--.+ ...--.+.|.-|.|||-|.+++..|... .||..-+=.-.+....-+|.=-.
T Consensus 415 dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a~v~vgi~------ 487 (521)
T PRK12483 415 DLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADGRVLAGLQ------ 487 (521)
T ss_pred ECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCceEEEEEEe------
Confidence 1100 111111011 2234567788899999999999999852 34333332222333333432111
Q ss_pred CCCHHHHHHHHHHHHH
Q 020194 171 IKDPKRLSTIKELLFN 186 (329)
Q Consensus 171 ~~~~~~~~~l~~~L~~ 186 (329)
+.+ +..+.+.+.|.+
T Consensus 488 ~~~-~~~~~~~~~l~~ 502 (521)
T PRK12483 488 VPE-DERAALDAALAA 502 (521)
T ss_pred eCh-hHHHHHHHHHHH
Confidence 111 334667777665
No 239
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=79.57 E-value=5.5 Score=40.28 Aligned_cols=62 Identities=16% Similarity=0.358 Sum_probs=44.1
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (329)
Q Consensus 26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~ 92 (329)
.+..+.+...|+||..+.++.+|..+++||-..++.. .+|.++-.+. .|+. + +++..+.|++
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~---~D~~-v-~~~~l~~i~~ 514 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLS---VDDP-V-PEEVLEELRA 514 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEE---CCCC-C-CHHHHHHHhc
Confidence 3445556669999999999999999999999999885 5677764444 3333 2 2456565553
No 240
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.53 E-value=17 Score=24.75 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=33.1
Q ss_pred EEEEEEeC---CCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194 252 TVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299 (329)
Q Consensus 252 t~l~v~a~---DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~ 299 (329)
+++.+.+. +.+|++.++.++|++.|+++......+.+ ..=.|.+..
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~ 50 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE 50 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH
Confidence 35566654 78999999999999999999888654422 223466644
No 241
>PRK11898 prephenate dehydratase; Provisional
Probab=79.51 E-value=9 Score=35.46 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=43.0
Q ss_pred eEEEEEEeC-CCcchHHHHHHHHhcCCeEEEEEEEEecCC-eEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194 251 YTVITMRSK-DRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLE 319 (329)
Q Consensus 251 ~t~l~v~a~-DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~-~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~ 319 (329)
.|.|-+... |+||-|+++-..|+++|||+.+..-.-... .-+=.||| |.+|+. .++. .+++.+.|.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~-~~~~-~~~al~~L~ 263 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI-DDVL-VAEALKELE 263 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccC-CCHH-HHHHHHHHH
Confidence 455555654 469999999999999999999887654333 34456777 445654 4432 333334443
No 242
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=79.21 E-value=21 Score=25.63 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=37.9
Q ss_pred EEEEE---eCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 118 SIEFT---GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 118 ~i~v~---~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
.|++. ..+.+|+++++..+|+++|+++..-- + ++ ....|.|.. .....+...+..|.+.|.+
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~-s~-~~is~~v~~---~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--T-SE-VSVSLTLDP---TKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--c-CC-cEEEEEEEc---hhhccchHHHHHHHHHHHh
Confidence 45664 35779999999999999999996442 2 22 334566654 2222112345556666554
No 243
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=78.35 E-value=4 Score=41.22 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=37.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEE
Q 020194 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHV 162 (329)
Q Consensus 114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V 162 (329)
.....+.+.-.|+||.+..++..|.++++||...++.... +.+.-++.+
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~ 499 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL 499 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc
Confidence 4455666777999999999999999999999998887643 444444443
No 244
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=77.51 E-value=4.7 Score=33.83 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=28.0
Q ss_pred CeEEEEEEe--CCCccHHHHHHHHHHhCCCcEEEEEE
Q 020194 115 EHTSIEFTG--TDRPGLFSEVCAVLADLHCNVVNAEI 149 (329)
Q Consensus 115 ~~~~i~v~~--~Dr~Gll~~i~~~l~~~g~~I~~A~i 149 (329)
+.-+|+++. .+.||+++.+++.++.+||+|..+-.
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 444555554 66899999999999999999986644
No 245
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.96 E-value=8.4 Score=25.49 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=30.2
Q ss_pred eCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194 123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (329)
Q Consensus 123 ~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~ 164 (329)
.++.+|.++++...|+++|++|......... +...-.|.+..
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 5788999999999999999999765553222 22444566643
No 246
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=76.47 E-value=5.9 Score=40.02 Aligned_cols=61 Identities=18% Similarity=0.338 Sum_probs=43.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (329)
Q Consensus 27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~ 92 (329)
+..+.+.-.|+||....++.+|.++++||-..++.. .+|.++-.+.+ |+. ++ ++..+.|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~---D~~-v~-~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL---DQP-VP-DEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc---CCC-CC-HHHHHHHhc
Confidence 344556669999999999999999999999999875 56777644443 332 22 445555553
No 247
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=76.19 E-value=4.6 Score=26.49 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=25.7
Q ss_pred EEEEEeC---CCcchHHHHHHHHhcCCeEEEEEEE
Q 020194 253 VITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMV 284 (329)
Q Consensus 253 ~l~v~a~---DrpGLL~~I~~~l~~~~i~I~~a~I 284 (329)
+++|.+. +.+|.++++.++|++.+++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 3455544 4899999999999999999987753
No 248
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=76.14 E-value=24 Score=38.35 Aligned_cols=75 Identities=8% Similarity=0.099 Sum_probs=54.9
Q ss_pred HHHHHHhc---CCCEEEEEeCC-CCCeEEEEE---EecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcC
Q 020194 5 YAKLIRRM---NPPRVVIDNNT-CADATVIKV---DSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDC 76 (329)
Q Consensus 5 ~~~~~~~~---~~~~V~v~~~~-~~~~~~v~v---~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~ 76 (329)
|-.|+.+. ..|.+.+.... +.....+.+ ..+...|+|..++.++..+||.+..+.+.+ .+|..+.+|+|...
T Consensus 204 y~~~~~~~~~~~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~ 283 (1002)
T PTZ00324 204 IQELLNRQVSSVGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGL 283 (1002)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecC
Confidence 55566553 34888887655 223334444 345566899999999999999999999988 67888889999876
Q ss_pred CCC
Q 020194 77 DGK 79 (329)
Q Consensus 77 ~g~ 79 (329)
.+.
T Consensus 284 ~~~ 286 (1002)
T PTZ00324 284 TAD 286 (1002)
T ss_pred CCC
Confidence 554
No 249
>PLN02317 arogenate dehydratase
Probab=75.77 E-value=22 Score=34.38 Aligned_cols=49 Identities=27% Similarity=0.259 Sum_probs=39.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCe---------------EEEEEEEEe
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR---------------AAAVVHVTD 164 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~---------------~~d~f~V~~ 164 (329)
.|.|.+.-+|+||.|+++..+|+.+|+|+..-......++ +.-.|||.-
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~ 346 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDF 346 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEE
Confidence 4677777799999999999999999999987776664333 456788875
No 250
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=75.62 E-value=16 Score=29.69 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=39.6
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEE
Q 020194 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNV 73 (329)
Q Consensus 25 ~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V 73 (329)
..-..++++-.||.|.|+++..++++.+|||+.....- .+|.+-.+..+
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi 119 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSI 119 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEE
Confidence 34567889999999999999999999999999887764 66766544443
No 251
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=75.48 E-value=21 Score=23.71 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=25.6
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEE
Q 020194 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEI 149 (329)
Q Consensus 118 ~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i 149 (329)
.|++.|. +++|+++++...|+++++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566554 7899999999999999999975433
No 252
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.36 E-value=23 Score=24.10 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=26.2
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEE
Q 020194 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEI 149 (329)
Q Consensus 118 ~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i 149 (329)
.|.+.|. +.+|+.+++...|++.|+++.....
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4666664 6799999999999999999976544
No 253
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=75.20 E-value=13 Score=36.53 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=45.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
.|.|-+..+|+||-|+++-++|+++|||+.+..-.-.. ..-+=.|||. .+|.. ++ ..+.+.+.|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD-~eg~~--~~-~v~~aL~~Lk~ 82 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVE-FDEAS--DR-KLEGVIEHLRQ 82 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEE-EecCc--cH-HHHHHHHHHHH
Confidence 46677777999999999999999999999987755332 3344578885 44654 22 33444444443
No 254
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.17 E-value=12 Score=24.77 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=29.6
Q ss_pred ecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEE
Q 020194 34 SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVI 74 (329)
Q Consensus 34 ~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~ 74 (329)
.++.+|.++++...|+.+|++|....... .+|...-+|.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 57889999999999999999997654432 223333356653
No 255
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=75.08 E-value=24 Score=28.70 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=41.5
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe-eCCeEEEEEEEEe
Q 020194 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTD 164 (329)
Q Consensus 113 ~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t-~~~~~~d~f~V~~ 164 (329)
...-+.+.+.-.||.|.|+++..++++.++||..-+..- ..|++--..-+..
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 345678889999999999999999999999999877655 4566665555543
No 256
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.85 E-value=24 Score=24.02 Aligned_cols=35 Identities=6% Similarity=-0.033 Sum_probs=28.5
Q ss_pred EEEEEEeC---CCcchHHHHHHHHhcCCeEEEEEEEEe
Q 020194 252 TVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNT 286 (329)
Q Consensus 252 t~l~v~a~---DrpGLL~~I~~~l~~~~i~I~~a~I~T 286 (329)
+++.+.+. ++||+++++..+|++.|+++......+
T Consensus 2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 35666664 789999999999999999998886544
No 257
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=74.68 E-value=3.1 Score=41.95 Aligned_cols=36 Identities=11% Similarity=-0.051 Sum_probs=33.3
Q ss_pred EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC
Q 020194 253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR 288 (329)
Q Consensus 253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g 288 (329)
.++|.|.||.|+..+|...|...+|++....|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 479999999999999999999999999999997764
No 258
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=73.92 E-value=18 Score=25.96 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=27.9
Q ss_pred EEEEEEe---CCCcchHHHHHHHHhcCCeEEEEEEEEe
Q 020194 252 TVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNT 286 (329)
Q Consensus 252 t~l~v~a---~DrpGLL~~I~~~l~~~~i~I~~a~I~T 286 (329)
+.++|.+ .+.+|+++++.++|++.++++....-++
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 4566643 4789999999999999999998776543
No 259
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.66 E-value=24 Score=25.90 Aligned_cols=39 Identities=8% Similarity=-0.041 Sum_probs=30.0
Q ss_pred eCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194 258 SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300 (329)
Q Consensus 258 a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~ 300 (329)
.++.||++++|-.+|++.|++|.... + ++ ..=.|-|...
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~s 49 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDPS 49 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEhh
Confidence 36889999999999999999999884 3 33 4445666543
No 260
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=73.60 E-value=29 Score=25.64 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=48.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (329)
.+.+.+.+.++|+.|.++.++....|+.+......+. ++++-.-|.|.. ..+ .+-|...|.+.
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s---~R~------~~lL~~QLeKl 67 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS---DRS------VDLLTSQLEKL 67 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC---CCC------hHHHHHHHHHH
Confidence 4688999999999999999999999999998888775 567766777754 233 25566666663
No 261
>PRK11898 prephenate dehydratase; Provisional
Probab=73.60 E-value=20 Score=33.18 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=37.8
Q ss_pred eEEEEEEeCC-CccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194 116 HTSIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (329)
Q Consensus 116 ~~~i~v~~~D-r~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~ 164 (329)
.+.+.+..++ +||.|+++...|+.+|+|+..-...... ..+.-.|||.-
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~ 246 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV 246 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE
Confidence 4556666655 6999999999999999999877776643 44567888875
No 262
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=73.55 E-value=1e+02 Score=30.64 Aligned_cols=121 Identities=14% Similarity=0.147 Sum_probs=73.0
Q ss_pred CCeEEEEEEeCC---CccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194 114 EEHTSIEFTGTD---RPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (329)
Q Consensus 114 ~~~~~i~v~~~D---r~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (329)
.+...|.|.+.. .+|.+++|...|+++|+||..-.... +.....|.+... ...+....|.+.+..
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~--~~~~i~~~v~~~----------~~~~a~~~l~~~~~~ 372 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSI--SEVSISFTVPES----------DAPRALRALLEEKLE 372 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEecc--CCCeEEEEEchh----------hHHHHHHHHHHHHhh
Confidence 456677777553 45999999999999999987432222 122255666531 123333334432221
Q ss_pred CCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEe---CCCcchHHH
Q 020194 191 YDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRS---KDRPKLLFD 267 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a---~DrpGLL~~ 267 (329)
... ++.++ ....++.+.+ ...||+.+.
T Consensus 373 ~~~-----------------------------------------------~v~~~---~~~a~vsiVG~gm~~~~gvaa~ 402 (447)
T COG0527 373 LLA-----------------------------------------------EVEVE---EGLALVSIVGAGMRSNPGVAAR 402 (447)
T ss_pred hcc-----------------------------------------------eEEee---CCeeEEEEEccccccCcCHHHH
Confidence 100 11111 1345555554 578999999
Q ss_pred HHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194 268 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300 (329)
Q Consensus 268 I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~ 300 (329)
+.++|++.||||.... -....=.|.|...
T Consensus 403 ~f~aL~~~~ini~~is----sSe~~Is~vV~~~ 431 (447)
T COG0527 403 IFQALAEENINIIMIS----SSEISISFVVDEK 431 (447)
T ss_pred HHHHHHhCCCcEEEEE----cCCceEEEEEccH
Confidence 9999999999999877 2345556767443
No 263
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=72.89 E-value=9.1 Score=26.62 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=23.9
Q ss_pred eCCCcchHHHHHHHHhcCCeEEEEEEE
Q 020194 258 SKDRPKLLFDIVCTLTDMQYVVFHGMV 284 (329)
Q Consensus 258 a~DrpGLL~~I~~~l~~~~i~I~~a~I 284 (329)
.+|+||.++++.++|++.|++|....-
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 479999999999999999999986643
No 264
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.35 E-value=34 Score=24.73 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=30.8
Q ss_pred EEEEE---eCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194 118 SIEFT---GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (329)
Q Consensus 118 ~i~v~---~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~ 164 (329)
.|+|. .++.||++++|..+|+++|+||..-. + ++ ....|.|..
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~ 48 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN 48 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec
Confidence 45552 57889999999999999999987553 2 22 344566654
No 265
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=72.31 E-value=13 Score=36.67 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=40.9
Q ss_pred CCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCe-EE-EEEEEEeCCCCC
Q 020194 248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE-AY-QEFYIRHVDGLP 304 (329)
Q Consensus 248 ~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~-~~-D~F~v~~~~g~~ 304 (329)
+...|.|-+...|+||-|+++-+.|+.+|||+.+..-.-.+.. -+ =.|||. .+|+.
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD-~Eg~~ 85 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVD-VELFH 85 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEE-EEcCH
Confidence 3455666677799999999999999999999998775544433 33 467774 34554
No 266
>PRK08639 threonine dehydratase; Validated
Probab=72.01 E-value=79 Score=30.91 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=43.9
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 113 ~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t-~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
+.....+.+.-+||||-|.+++..+...+.||..-+-.. .+.....++..-. ..+++..+++.+.|.+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE------~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE------LKDAEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 445778899999999999999997777777998775442 2211222222222 1124566777777765
No 267
>PRK12483 threonine dehydratase; Reviewed
Probab=71.71 E-value=73 Score=32.28 Aligned_cols=157 Identities=18% Similarity=0.271 Sum_probs=86.3
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHH-HHHHHHHHHHHcCC
Q 020194 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRL-STIKELLFNVLRGY 191 (329)
Q Consensus 113 ~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~-~~l~~~L~~~L~~~ 191 (329)
+.....+.|.-+||||-|.+++..|... ||.+..-...+.+-..++.... - .+++.. ++|.+.|.+ .+.
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie-~-----~~~~~~~~~i~~~l~~--~g~ 411 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQ-T-----HPRHDPRAQLLASLRA--QGF 411 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEE-e-----CChhhhHHHHHHHHHH--CCC
Confidence 3456778899999999999999999988 7776655443323233333332 1 123344 666666654 221
Q ss_pred CCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHH
Q 020194 192 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCT 271 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~ 271 (329)
.. . .+.. ... .+.|. +.. .+| ..+ ...+--++.|.=+.|||=|.+++++
T Consensus 412 -~~---~-dlsd---ne~-~k~h~-----r~~-----~g~------~~~------~~~~E~~~~v~iPE~pGa~~~f~~~ 460 (521)
T PRK12483 412 -PV---L-DLTD---DEL-AKLHI-----RHM-----VGG------RAP------LAHDERLFRFEFPERPGALMKFLSR 460 (521)
T ss_pred -Ce---E-ECCC---CHH-HHHHH-----Hhc-----cCC------CCC------CCCceEEEEEEcCCCCcHHHHHHHH
Confidence 10 0 1110 000 01110 111 011 111 1234567888889999999999999
Q ss_pred Hhc-CCeEEEEEEEEecCCeEEEEEE-EEeCCCCCCCCHHHHHHHHHHHH
Q 020194 272 LTD-MQYVVFHGMVNTGRTEAYQEFY-IRHVDGLPISSEAERERVIQCLE 319 (329)
Q Consensus 272 l~~-~~i~I~~a~I~T~g~~~~D~F~-v~~~~g~~l~~~~~~~~l~~~L~ 319 (329)
|.. .+|...+=+.+ |...-.+|. |+- .+ +..+.+.+.|.
T Consensus 461 l~~~~niTeF~YR~~--~~~~a~v~vgi~~------~~-~~~~~~~~~l~ 501 (521)
T PRK12483 461 LGPRWNISLFHYRNH--GAADGRVLAGLQV------PE-DERAALDAALA 501 (521)
T ss_pred hCCCcceeeeeecCC--CCCceEEEEEEee------Ch-hHHHHHHHHHH
Confidence 997 47776665543 444444442 221 11 33466666654
No 268
>PRK09224 threonine dehydratase; Reviewed
Probab=70.95 E-value=76 Score=31.93 Aligned_cols=130 Identities=20% Similarity=0.261 Sum_probs=73.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHH-HHHHHHHHHHHHcCCC
Q 020194 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR-LSTIKELLFNVLRGYD 192 (329)
Q Consensus 114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~-~~~l~~~L~~~L~~~~ 192 (329)
.....+.|.-+||||-|.+++..|. +.||..-+-.-.+.....+|+... -. +++. .+.|.+.|.+ .+.
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie-~~-----~~~~~~~~i~~~L~~--~gy- 394 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQ-LS-----RGQEERAEIIAQLRA--HGY- 394 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEE-eC-----ChhhHHHHHHHHHHH--cCC-
Confidence 3467888999999999999999999 678876554443333344443333 11 1223 6777777765 221
Q ss_pred CcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHHH
Q 020194 193 DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~l 272 (329)
.. . .+. .....+++. ++.. +| ..+. ..+--++.+.=+.|||-|-++..+|
T Consensus 395 ~~---~-~ls----~ne~~k~h~-----r~~~-----g~------~~~~------~~~e~~~~~~fPerpGal~~Fl~~l 444 (504)
T PRK09224 395 PV---V-DLS----DDELAKLHV-----RYMV-----GG------RPPK------PLDERLYRFEFPERPGALLKFLSTL 444 (504)
T ss_pred Ce---E-ECC----CCHHHHHHH-----Hhcc-----CC------CCCC------CCceEEEEEeCCCCCCHHHHHHHhc
Confidence 11 0 111 000111111 1110 11 1111 1134567788899999999999977
Q ss_pred hcCCeEEEEEEEE
Q 020194 273 TDMQYVVFHGMVN 285 (329)
Q Consensus 273 ~~~~i~I~~a~I~ 285 (329)
. -+-+|...+-.
T Consensus 445 ~-~~~~It~f~Yr 456 (504)
T PRK09224 445 G-THWNISLFHYR 456 (504)
T ss_pred C-CCCeeEEEEEc
Confidence 7 66677766654
No 269
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=70.75 E-value=86 Score=31.56 Aligned_cols=65 Identities=17% Similarity=0.328 Sum_probs=43.8
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
.....+.|.-+||||-|.+++.+|.. .||...+-.-.+....-+|+.-. +.+++..++|.+.|.+
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie------~~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQ------LSNPQERQEILARLND 387 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 35677889999999999999999997 47766555433333344444332 1134677788887765
No 270
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=70.15 E-value=29 Score=23.11 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=24.4
Q ss_pred EEEEe---CCCccHHHHHHHHHHhCCCcEEEEE
Q 020194 119 IEFTG---TDRPGLFSEVCAVLADLHCNVVNAE 148 (329)
Q Consensus 119 i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A~ 148 (329)
|++.+ .+.+|+++++.+.|++.|+++....
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 55554 4679999999999999999996554
No 271
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=70.07 E-value=17 Score=23.53 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=25.1
Q ss_pred EEEEEeCC---CccHHHHHHHHHHhCCCcEEEEEE
Q 020194 118 SIEFTGTD---RPGLFSEVCAVLADLHCNVVNAEI 149 (329)
Q Consensus 118 ~i~v~~~D---r~Gll~~i~~~l~~~g~~I~~A~i 149 (329)
.|++.+.+ .+|.++++.++|++++++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 35555555 899999999999999999975533
No 272
>PRK09224 threonine dehydratase; Reviewed
Probab=69.82 E-value=92 Score=31.36 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=68.4
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccC----C
Q 020194 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS----F 100 (329)
Q Consensus 26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~----~ 100 (329)
.-..+.|.-|||||-|.+++.+|. +.||..-+-.. ..+.+- +|+..+..+. +.-.+.|.+.|....- +
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~-V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l 399 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAH-IFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL 399 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEE-EEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence 456889999999999999999999 67777654432 222322 3332232221 1113455555644321 1
Q ss_pred CCC------cceeeee-c-CCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEE
Q 020194 101 APS------LRSSVGV-M-PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (329)
Q Consensus 101 ~~~------~~~~v~~-~-~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~ 150 (329)
... .+..|-- . ....--.+.|.-|.|||-|-+.+..|. -+.||..-+=.
T Consensus 400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 100 1111110 1 112344677889999999999999776 77888766654
No 273
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=69.52 E-value=50 Score=37.81 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=58.6
Q ss_pred CCCEEEEEeCC--CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe---cC--CEEEEEEEEEcCCCCCCCcHH
Q 020194 13 NPPRVVIDNNT--CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS---DG--GWFMDVFNVIDCDGKKIRDKE 85 (329)
Q Consensus 13 ~~~~V~v~~~~--~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t---~~--g~~~d~F~V~~~~g~~~~~~~ 85 (329)
++..+.+.... ..+.+.+.+|.+.++..|+++.-+|..+|+.|++.+-+. .+ ...+..|.+..+.+......+
T Consensus 473 ~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~ 552 (1528)
T PF05088_consen 473 GPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDD 552 (1528)
T ss_pred CCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHH
Confidence 44566665433 336789999999999999999999999999999998764 22 355667888887776543334
Q ss_pred HHHHHHHHh
Q 020194 86 VIDYIQQRL 94 (329)
Q Consensus 86 ~~~~ie~~L 94 (329)
..+.++++|
T Consensus 553 ~~~~~~~a~ 561 (1528)
T PF05088_consen 553 IRERFEEAF 561 (1528)
T ss_pred HHHHHHHHH
Confidence 444444444
No 274
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.03 E-value=35 Score=23.55 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=22.1
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCCcE
Q 020194 118 SIEFTGT---DRPGLFSEVCAVLADLHCNV 144 (329)
Q Consensus 118 ~i~v~~~---Dr~Gll~~i~~~l~~~g~~I 144 (329)
.|.+.|. +.+|+++++.++|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4667775 67999999999999987765
No 275
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=68.95 E-value=29 Score=34.17 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=39.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~ 164 (329)
.+.|.+..+|+||-|+++...|+.+|+|+.+-...... ....-.|||.-
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~ 65 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF 65 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE
Confidence 56777777999999999999999999999876666543 34456788875
No 276
>PRK08526 threonine dehydratase; Provisional
Probab=68.77 E-value=47 Score=32.37 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=47.5
Q ss_pred CCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-----CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-----TEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 248 ~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-----~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
......+.|.-+||||=|.+++..+.+.+.||....-.... ..+.=.+-+.-. +++..++|.+.|.+
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~------~~~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK------GKEHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999877653322 223322333211 35677788887754
No 277
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=68.68 E-value=45 Score=24.66 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=40.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 020194 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV 73 (329)
Q Consensus 27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V 73 (329)
...+.+.+.++|+.+.++.++....|..|.....++ +.|.+-..|.|
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 467889999999999999999999999999988886 45666556766
No 278
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=68.50 E-value=31 Score=22.79 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=25.9
Q ss_pred EEEEEeC---CCcchHHHHHHHHhcCCeEEEEEEE
Q 020194 253 VITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMV 284 (329)
Q Consensus 253 ~l~v~a~---DrpGLL~~I~~~l~~~~i~I~~a~I 284 (329)
+|++.+. +++|+++++..+|++.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4556543 8899999999999999999976654
No 279
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.03 E-value=33 Score=22.86 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=24.3
Q ss_pred EEEEe---CCCccHHHHHHHHHHhCCCcEEEEE
Q 020194 119 IEFTG---TDRPGLFSEVCAVLADLHCNVVNAE 148 (329)
Q Consensus 119 i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A~ 148 (329)
|++.+ .+.+|+++++...|+++|+++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 55554 4679999999999999999996554
No 280
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.63 E-value=46 Score=24.00 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=37.0
Q ss_pred eCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 123 ~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
.++.+|+++++.++|+++|+||..-- + ++ ..-.|.|... ...+.+ +.+.+|.+.|.+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~--~~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPD--PNGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCc--ccccch-HHHHHHHHHHHh
Confidence 45789999999999999999987552 2 22 3445666541 212322 356667666665
No 281
>PLN02550 threonine dehydratase
Probab=66.24 E-value=1.7e+02 Score=30.26 Aligned_cols=114 Identities=10% Similarity=0.132 Sum_probs=66.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccC----CC
Q 020194 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS----FA 101 (329)
Q Consensus 27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~----~~ 101 (329)
...+.|.-+||||-|.+++.+|... ||.+-.-.. ..+.+--.+.| +..+ ++..+.|.+.|....- +.
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~i-e~~~-----~~~~~~i~~~l~~~g~~~~~l~ 488 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSV-GVHT-----EQELQALKKRMESAQLRTVNLT 488 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEE-EeCC-----HHHHHHHHHHHHHCCCCeEeCC
Confidence 4678899999999999999999986 777664432 22222212222 2222 3455666666655421 11
Q ss_pred CC-----cceeee--ecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEE
Q 020194 102 PS-----LRSSVG--VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEI 149 (329)
Q Consensus 102 ~~-----~~~~v~--~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i 149 (329)
.. ..|.+. -..-..--.+.+.-|.|||-|.+++.+|.. ..||..-+=
T Consensus 489 ~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~Y 542 (591)
T PLN02550 489 SNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHY 542 (591)
T ss_pred CChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEe
Confidence 10 011111 111133456778899999999999998875 244444333
No 282
>PRK09084 aspartate kinase III; Validated
Probab=65.34 E-value=1.5e+02 Score=29.37 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=34.0
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194 114 EEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (329)
Q Consensus 114 ~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~ 164 (329)
.+...|+|.+. +.+|+++++..+|+++|++|..-. +. ...-.|.|..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--ss--e~sIs~~i~~ 353 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TS--EVSVSLTLDT 353 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--cc--CcEEEEEEec
Confidence 44567777654 688999999999999999998654 21 2344566654
No 283
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.62 E-value=38 Score=23.46 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=25.6
Q ss_pred EEEEEec--CCccHHHHHHHHHHhCCceEEEEEEEe
Q 020194 29 VIKVDSV--NKHGILLQVIQVLNDVNLVIKKAYISS 62 (329)
Q Consensus 29 ~v~v~~~--Dr~GL~a~i~~~L~~~glnI~~A~i~t 62 (329)
.|++.+. ..+|+++++..+|++.|++|.-....+
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555554 458999999999999999997544433
No 284
>PRK05925 aspartate kinase; Provisional
Probab=64.61 E-value=1.5e+02 Score=29.27 Aligned_cols=102 Identities=16% Similarity=0.070 Sum_probs=61.1
Q ss_pred eEEEEEEec-CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCcc
Q 020194 27 ATVIKVDSV-NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLR 105 (329)
Q Consensus 27 ~~~v~v~~~-Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~ 105 (329)
.+.|++.+. ...|.++++..+|+++|++|.-.. .+.. -..|.+...+.. ....+.|...+....
T Consensus 300 ~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i~-s~~~---sis~~i~~~~~~----~~~~~~l~~~l~~~~------- 364 (440)
T PRK05925 300 QALWSVDYNSLGLVRLEDVLGILRSLGIVPGLVM-AQNL---GVYFTIDDDDIS----EEYPQHLTDALSAFG------- 364 (440)
T ss_pred EEEEEEecCCcchhHHHHHHHHHHHcCCcEEEEe-ccCC---EEEEEEechhcc----HHHHHHHHHHhcCCc-------
Confidence 345555432 246779999999999999996331 2222 234665442211 123333333333211
Q ss_pred eeeeecCCCCeEEEEEEeCC--CccHHHHHHHHHHhCCCcEEE
Q 020194 106 SSVGVMPTEEHTSIEFTGTD--RPGLFSEVCAVLADLHCNVVN 146 (329)
Q Consensus 106 ~~v~~~~~~~~~~i~v~~~D--r~Gll~~i~~~l~~~g~~I~~ 146 (329)
.+ ....+...|.|.|.+ .+|+.+++..+|++.|+||..
T Consensus 365 -~i--~~~~~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~ 404 (440)
T PRK05925 365 -TV--SCEGPLALITMIGAKLASWKVVRTFTEKLRGYQTPVFC 404 (440)
T ss_pred -eE--EEECCEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEE
Confidence 11 222356778888763 378999999999999999964
No 285
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=64.53 E-value=27 Score=34.56 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=39.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEE-EEEEEEe
Q 020194 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAA-AVVHVTD 164 (329)
Q Consensus 114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~-d~f~V~~ 164 (329)
...+.|.+..+|++|-|+++.+.|+.+|+|+..-...... +... -.|||.-
T Consensus 29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 3456777777999999999999999999999877666654 3344 5788875
No 286
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.76 E-value=48 Score=22.90 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=26.1
Q ss_pred EEEEEeC--CCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194 118 SIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEIWT 151 (329)
Q Consensus 118 ~i~v~~~--Dr~Gll~~i~~~l~~~g~~I~~A~i~t 151 (329)
.|.+.|. ..+|+++++..+|++.|++|......+
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566665 468999999999999999997554444
No 287
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.65 E-value=48 Score=22.84 Aligned_cols=27 Identities=4% Similarity=-0.026 Sum_probs=21.7
Q ss_pred EEEEEeC---CCcchHHHHHHHHhcCCeEE
Q 020194 253 VITMRSK---DRPKLLFDIVCTLTDMQYVV 279 (329)
Q Consensus 253 ~l~v~a~---DrpGLL~~I~~~l~~~~i~I 279 (329)
++.+.+. +.||+++++.++|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4555554 78999999999999987776
No 288
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.67 E-value=47 Score=22.06 Aligned_cols=30 Identities=7% Similarity=0.110 Sum_probs=24.9
Q ss_pred EEEEe---CCCcchHHHHHHHHhcCCeEEEEEE
Q 020194 254 ITMRS---KDRPKLLFDIVCTLTDMQYVVFHGM 283 (329)
Q Consensus 254 l~v~a---~DrpGLL~~I~~~l~~~~i~I~~a~ 283 (329)
+.|.+ .+.||++.++..+|++.++++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 45544 4779999999999999999997775
No 289
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=59.79 E-value=60 Score=23.06 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=25.9
Q ss_pred EEEEEe---CCCccHHHHHHHHHHhCCCcEEEEEEE
Q 020194 118 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIW 150 (329)
Q Consensus 118 ~i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A~i~ 150 (329)
.|++.| .+.+|+++++.++|+++|+++......
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 466644 377899999999999999999755443
No 290
>PLN02550 threonine dehydratase
Probab=57.46 E-value=1.7e+02 Score=30.11 Aligned_cols=155 Identities=14% Similarity=0.210 Sum_probs=83.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCCc
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDF 194 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~ 194 (329)
....+.|.-+||||-|.+++..|... ||.+..-....-...-+++... ..+++..++|.+.|.+ .+....
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie------~~~~~~~~~i~~~l~~--~g~~~~ 485 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVG------VHTEQELQALKKRMES--AQLRTV 485 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEE------eCCHHHHHHHHHHHHH--CCCCeE
Confidence 45678899999999999999999986 7766544432212222232222 1134667777777765 221110
Q ss_pred ccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHHHhc
Q 020194 195 RKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTD 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~l~~ 274 (329)
.+.. ...-..|++++ . | . ...+ ..--++.+.=+.|||-|..+..+|..
T Consensus 486 -----~l~~--~~~~~~~LR~v-------~------g----~--ra~~------~~E~l~~v~fPErpGAl~~Fl~~lg~ 533 (591)
T PLN02550 486 -----NLTS--NDLVKDHLRYL-------M------G----G--RAIV------KDELLYRFVFPERPGALMKFLDAFSP 533 (591)
T ss_pred -----eCCC--ChHHhhhhhhe-------e------c----c--cccc------CceEEEEEEecCcCCHHHHHHHhhCC
Confidence 1210 00000122211 0 0 0 0111 24567888889999999999999987
Q ss_pred -CCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194 275 -MQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE 319 (329)
Q Consensus 275 -~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~ 319 (329)
.+|...+=+ ..|+..-.+|.=-. +. ++..+.+.+.|.
T Consensus 534 ~~nITeF~YR--~~~~~~a~vlvGi~-----v~-~~e~~~l~~~l~ 571 (591)
T PLN02550 534 RWNISLFHYR--GQGETGANVLVGIQ-----VP-PEEMQEFKSRAN 571 (591)
T ss_pred CCceeeEEee--cCCCCCccEEEEEe-----eC-HHHHHHHHHHHH
Confidence 477666655 33443333442111 11 134566666654
No 291
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=56.80 E-value=55 Score=21.69 Aligned_cols=42 Identities=7% Similarity=0.078 Sum_probs=30.0
Q ss_pred EEEEe---CCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194 254 ITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299 (329)
Q Consensus 254 l~v~a---~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~ 299 (329)
+.|.+ .+.||++.++...|++.|+++.....+ + ..=.|.|.+
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~--~~is~~v~~ 47 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTS--E--IKISCLIDE 47 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcc--C--ceEEEEEeH
Confidence 44543 477999999999999999999777532 2 333466644
No 292
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=55.59 E-value=3.9e+02 Score=31.03 Aligned_cols=178 Identities=12% Similarity=0.075 Sum_probs=110.6
Q ss_pred CEEEEEeCCCCCeEEEEEEecC-Cc--cHHHHHHHHHHhC-CceEEEEEEE-ecCCEEEEEEEEEcCCCCC--CCcHHHH
Q 020194 15 PRVVIDNNTCADATVIKVDSVN-KH--GILLQVIQVLNDV-NLVIKKAYIS-SDGGWFMDVFNVIDCDGKK--IRDKEVI 87 (329)
Q Consensus 15 ~~V~v~~~~~~~~~~v~v~~~D-r~--GL~a~i~~~L~~~-glnI~~A~i~-t~~g~~~d~F~V~~~~g~~--~~~~~~~ 87 (329)
..+.+.........-+.||.|- +- .+-.+|...|.+. +....+-+.. +.+..+-.-|++....+.. ++..+++
T Consensus 329 vRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~d~~~le 408 (1528)
T PF05088_consen 329 VRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDIDVEALE 408 (1528)
T ss_pred eeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCCCHHHHH
Confidence 4556666666777777777653 32 3667777777654 4444444443 4666777678876666654 2333444
Q ss_pred HHHHHHhccccC-------------------------CC------CCc-----------------ceeeee----cCCCC
Q 020194 88 DYIQQRLETDAS-------------------------FA------PSL-----------------RSSVGV----MPTEE 115 (329)
Q Consensus 88 ~~ie~~L~~~~~-------------------------~~------~~~-----------------~~~v~~----~~~~~ 115 (329)
+.|..+.....+ .+ -++ ...+.+ ...++
T Consensus 409 ~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~ 488 (1528)
T PF05088_consen 409 ARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPG 488 (1528)
T ss_pred HHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCC
Confidence 444333322100 00 000 011222 33446
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-----CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-----DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-----~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (329)
.+.+.++...++..|+++.-+|..+|+.|.+.+-+... ..+.-.|++..+ .+..+...+..+.+++++..+..+
T Consensus 489 ~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-~~~~~~~~~~~~~~~~a~~~v~~g 567 (1528)
T PF05088_consen 489 RLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP-DGDALDLDDIRERFEEAFEAVWNG 567 (1528)
T ss_pred eEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC-CCccccHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999877642 235678999873 444343345667888888887766
Q ss_pred CCC
Q 020194 191 YDD 193 (329)
Q Consensus 191 ~~~ 193 (329)
...
T Consensus 568 ~~e 570 (1528)
T PF05088_consen 568 RAE 570 (1528)
T ss_pred CCC
Confidence 543
No 293
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=55.52 E-value=20 Score=36.23 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=32.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~ 152 (329)
.++|.|.||.|+..+|...|..+++|+....|...
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~ 36 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI 36 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence 47899999999999999999999999999999764
No 294
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=55.30 E-value=50 Score=23.71 Aligned_cols=54 Identities=11% Similarity=0.018 Sum_probs=35.6
Q ss_pred CCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 259 KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 259 ~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
.-.||++++|.++|++.|+++...- + ++ ..=.|-+... .+.+ +..++|.+.|..
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~~~---~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALHME---NAED-TNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEehh---hcCh-HHHHHHHHHHHH
Confidence 3569999999999999999999884 3 33 3334544332 2222 245677766654
No 295
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=53.53 E-value=28 Score=33.52 Aligned_cols=36 Identities=11% Similarity=-0.062 Sum_probs=32.4
Q ss_pred EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC
Q 020194 253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR 288 (329)
Q Consensus 253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g 288 (329)
.|+|.|.||.||..++-..|...+|++....|...|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 478999999999999999999999999999985444
No 296
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=52.12 E-value=73 Score=25.48 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCCCeEEEEEEeC---CCcchHHHHHHHHhcCCeEEEEEEEEec
Q 020194 238 SRPQVTVLNIEKDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTG 287 (329)
Q Consensus 238 ~~~~v~i~~~~~~~t~l~v~a~---DrpGLL~~I~~~l~~~~i~I~~a~I~T~ 287 (329)
+|..|.+ +..+..+.+.++ |-+|+|..|.+.|++.||.|.-. +|+
T Consensus 53 vp~~V~~---~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFav--Sty 100 (128)
T COG3603 53 VPDVVQI---EKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAV--STY 100 (128)
T ss_pred CCcceEe---cCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEE--Eec
Confidence 4554544 347777777765 99999999999999999999654 454
No 297
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=51.15 E-value=1.4e+02 Score=29.04 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=43.8
Q ss_pred CCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE-ecC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN-TGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 248 ~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~-T~g-~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
......+.+.=+||||=|.++++.+...+-||...+-. ..+ +.+.=.+-+.-. +++..+++.+.|.+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~------~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELN------DKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence 46788999999999999999999666666688866544 333 233223333222 13556777777654
No 298
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=49.59 E-value=54 Score=22.98 Aligned_cols=33 Identities=3% Similarity=0.236 Sum_probs=23.4
Q ss_pred HHHHHhCCceEEEEEEEecCCEEEEEEEEEcCC
Q 020194 45 IQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCD 77 (329)
Q Consensus 45 ~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~ 77 (329)
......+|..+..=.+.|.||+.+..|.+....
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 356788999999999999999999999975543
No 299
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=47.85 E-value=63 Score=29.01 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=61.0
Q ss_pred CCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEE----EEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhcccc
Q 020194 23 TCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKK----AYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDA 98 (329)
Q Consensus 23 ~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~----A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~ 98 (329)
++.-...|.+.+.|+....+.+-.+|..+|.++-. ..+|...|.+. +.. .+. ...+.++.++.-..
T Consensus 88 P~Gvaiive~lTDN~nRt~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~i~----~~~-~~~-----~~d~~~e~aIe~Ga 157 (234)
T PF01709_consen 88 PGGVAIIVECLTDNKNRTVSDIRSIFKKNGGSLGPSGSVSFMFERKGVIE----VSK-KDL-----DEDELMEDAIEAGA 157 (234)
T ss_dssp TTTEEEEEEEEES-HHHHHHHHHHHHHTTT-EEE-TTSSGGGEEEEEEEE----EEH-CCS------HHHHHHHHHHHTE
T ss_pred CCCcEEEEEEeCCCHhHHHHHHHHHHHHcCceeCCCCcceeeeeeeEEEE----EEe-CCC-----ChHHHHHHHHhCCC
Confidence 34455688999999999999999999999998775 33344444332 222 111 12233344444221
Q ss_pred CCCCCcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEE
Q 020194 99 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (329)
Q Consensus 99 ~~~~~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~ 150 (329)
. ++..+.+. +.|+|. |.-|..+..+|...|+.|.++.+.
T Consensus 158 e---------Dve~~d~~--~~~~c~--p~~~~~v~~~L~~~g~~i~~~e~~ 196 (234)
T PF01709_consen 158 E---------DVEEDDGE--FEFICD--PSDLSAVKKALEKKGYEIESAELE 196 (234)
T ss_dssp S---------EEEECTSE--EEEEEE--GGGHHHHHHHHHHTT---SEEEEE
T ss_pred c---------EeeecCCe--EEEEEC--HHHHHHHHHHHHHcCCCeeEEEEE
Confidence 1 12222333 444442 667999999999999999988875
No 300
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=47.72 E-value=1e+02 Score=22.06 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=34.5
Q ss_pred CCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194 124 TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (329)
Q Consensus 124 ~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (329)
...+|+++++.++|+++|+||..-- + ++ ..-.|.+.. ..+.+ +.++.|.+.|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~~----~~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALHM----ENAED-TNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeh----hhcCh-HHHHHHHHHHHH
Confidence 3468999999999999999987553 2 22 334455543 12221 255666666665
No 301
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.50 E-value=21 Score=26.19 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=28.0
Q ss_pred eCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194 123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (329)
Q Consensus 123 ~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~ 164 (329)
.++.||+++++..+|+++|+||..-. + ++ ..-.|.|..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~ 48 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDP 48 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEh
Confidence 46789999999999999999987552 2 22 334566654
No 302
>PRK08841 aspartate kinase; Validated
Probab=46.48 E-value=2.8e+02 Score=26.86 Aligned_cols=113 Identities=9% Similarity=0.176 Sum_probs=66.9
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCcceeeeecCCCCeEE
Q 020194 39 GILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTS 118 (329)
Q Consensus 39 GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~~~v~~~~~~~~~~ 118 (329)
+.++++.+.|+.+|+++.--. +....+ .|.|.. . ....++..+... + ....+...
T Consensus 266 ~~~~~i~~~l~~~~i~v~~i~--~~~~~~--~~~v~~--------~-~~~~~~~~~~~~----------i--~~~~~~a~ 320 (392)
T PRK08841 266 ESLPSLTKQCQMLGIEVWNVI--EEADRA--QIVIKQ--------D-ACAKLKLVFDDK----------I--RNSESVSL 320 (392)
T ss_pred chHHHHHHHHHHcCCCEEEEE--ecCCcE--EEEECH--------H-HHHHHHHhCccc----------E--EEeCCEEE
Confidence 357899999999998887432 222111 244421 1 112222222111 1 11246778
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (329)
Q Consensus 119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (329)
|.+.|...||+.+++..+|.+.|+||.... + + .....|.|.. +..++.-+.|++.+..
T Consensus 321 vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~--~-s-~~~is~vv~~----------~~~~~av~~lH~~f~~ 378 (392)
T PRK08841 321 LTLVGLEANGMVEHACNLLAQNGIDVRQCS--T-E-PQSSMLVLDP----------ANVDRAANILHKTYVT 378 (392)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCCEEEEE--C-C-CcEEEEEEeH----------HHHHHHHHHHHHHHcC
Confidence 999999999999999999999999985332 2 2 2334455532 3345555667766643
No 303
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=44.88 E-value=80 Score=23.69 Aligned_cols=50 Identities=6% Similarity=-0.073 Sum_probs=36.2
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCC
Q 020194 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPI 305 (329)
Q Consensus 250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l 305 (329)
....+.+...| +....+.|.+.|+++........+.. ..||+.|++|..+
T Consensus 61 ~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 61 PGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 45566777777 67778888999999887653332222 5899999999875
No 304
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=44.88 E-value=94 Score=20.85 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=27.6
Q ss_pred CCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194 124 TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (329)
Q Consensus 124 ~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~ 164 (329)
.+++|+.+++.++|+++|+++..- .| +. ..-.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i--~t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI--PT-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE--ec-CC-CEEEEEEeh
Confidence 477899999999999999998755 23 22 345666664
No 305
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=44.80 E-value=1e+02 Score=21.35 Aligned_cols=46 Identities=9% Similarity=0.190 Sum_probs=30.8
Q ss_pred EEEEEEeC--CCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194 252 TVITMRSK--DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299 (329)
Q Consensus 252 t~l~v~a~--DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~ 299 (329)
.++.+.+. -+||++.++.++|.+.|+++......+ ....=.|.|.+
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~--s~~~is~~V~~ 50 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSM--RNVDVQFVVDR 50 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecC--CeeEEEEEEEH
Confidence 44555553 378999999999999999997765332 22333355543
No 306
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.18 E-value=1e+02 Score=20.98 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=27.8
Q ss_pred EEEEEEeC---CCcchHHHHHHHHhcCCeEEEEEEEEecCCe-EEEEEEEEe
Q 020194 252 TVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE-AYQEFYIRH 299 (329)
Q Consensus 252 t~l~v~a~---DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~-~~D~F~v~~ 299 (329)
.++.+.+. ++||++.++.++|++.++.+ -+.|.. ..=.|.|.+
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~i~i~~-----i~~~~s~~~is~~V~~ 48 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALEDINVRM-----ICYGASNHNLCFLVKE 48 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHhCCeEE-----EEEecCccEEEEEEeH
Confidence 45666665 78999999999998744443 334444 333466644
No 307
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.80 E-value=1e+02 Score=20.94 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=26.6
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (329)
Q Consensus 118 ~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~ 164 (329)
.|.+.|. ++||+++++..+|++ ++|.- +........-.|.|..
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~--i~~~~s~~~is~~V~~ 48 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALED--INVRM--ICYGASNHNLCFLVKE 48 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHh--CCeEE--EEEecCccEEEEEEeH
Confidence 5677776 789999999999976 44442 2221223344566653
No 308
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=43.43 E-value=45 Score=23.37 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=24.4
Q ss_pred EEEEEeC-CCccHHHHHHHHHHhCCCcEEEE
Q 020194 118 SIEFTGT-DRPGLFSEVCAVLADLHCNVVNA 147 (329)
Q Consensus 118 ~i~v~~~-Dr~Gll~~i~~~l~~~g~~I~~A 147 (329)
.|+|.+. +.+|.+++|.+.|+++|+||.--
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 4555543 56999999999999999999866
No 309
>PRK08639 threonine dehydratase; Validated
Probab=42.78 E-value=2.2e+02 Score=27.86 Aligned_cols=68 Identities=12% Similarity=0.020 Sum_probs=41.6
Q ss_pred CCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE-ecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN-TGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 248 ~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~-T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
+.....+.+.-+||||-|.++++.+...+-||...+=. ..+.....++..-.- .+++..+++.+.|.+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~-----~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIEL-----KDAEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 56788899999999999999999555544477766533 112211122222121 123566777777654
No 310
>PLN02828 formyltetrahydrofolate deformylase
Probab=40.07 E-value=3e+02 Score=25.29 Aligned_cols=103 Identities=13% Similarity=0.051 Sum_probs=51.0
Q ss_pred HHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCcceeeeecCCCCeEEEEE
Q 020194 44 VIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEF 121 (329)
Q Consensus 44 i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~~~v~~~~~~~~~~i~v 121 (329)
+++.|+++|+||.+++.++ ..|.++-...+. .++......++.+.+.. +..... . ..-.+..........|-|
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~-~~~~~~~~~~~~~~~~~-~~~~~~--~-~~~~~~~~~~~~~~riav 75 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFI-FDPVKWPRAQMDEDFQE-ISKHFK--A-LKSVVRVPGLDPKYKIAV 75 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEE-eCCCCCCHHHHHHHHHH-HHHhcC--C-cceEEEEccCCCCcEEEE
Confidence 4689999999999999997 445555333322 22322222233333332 222111 0 000122211112234444
Q ss_pred EeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194 122 TGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (329)
Q Consensus 122 ~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t 151 (329)
...-..--|.++......-.+++.=+-+.+
T Consensus 76 lvSg~g~nl~~ll~~~~~g~l~~eI~~ViS 105 (268)
T PLN02828 76 LASKQDHCLIDLLHRWQDGRLPVDITCVIS 105 (268)
T ss_pred EEcCCChhHHHHHHhhhcCCCCceEEEEEe
Confidence 444444557777777777766655555555
No 311
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=39.86 E-value=1.3e+02 Score=20.91 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=29.9
Q ss_pred EEEEEEeCC--CccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEE
Q 020194 117 TSIEFTGTD--RPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163 (329)
Q Consensus 117 ~~i~v~~~D--r~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~ 163 (329)
..|.+.|.. ++|+.+++.++|.+.|+++......+ ......|.|.
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~--s~~~is~~V~ 49 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSM--RNVDVQFVVD 49 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecC--CeeEEEEEEE
Confidence 356666643 68999999999999999986433322 2233445554
No 312
>PRK00907 hypothetical protein; Provisional
Probab=39.70 E-value=1.7e+02 Score=22.26 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=37.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe---eCCeEE-EEEEEEe
Q 020194 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT---HNDRAA-AVVHVTD 164 (329)
Q Consensus 116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t---~~~~~~-d~f~V~~ 164 (329)
.+.+.|.|.+.+++...|..++..+.-......+.. .+|++. ..+.|.-
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a 69 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA 69 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE
Confidence 478999999999999999999999987766666643 345554 4555553
No 313
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=39.58 E-value=1.4e+02 Score=22.30 Aligned_cols=51 Identities=6% Similarity=-0.085 Sum_probs=36.4
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 020194 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (329)
Q Consensus 25 ~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~ 81 (329)
.....+.+...| +..+...|...|++|...-....++. ..|++.+++|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 456678888887 67777888889999986644333222 3588899999854
No 314
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=38.19 E-value=60 Score=22.73 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=29.7
Q ss_pred EEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 020194 29 VIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVID 75 (329)
Q Consensus 29 ~v~v~-~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~ 75 (329)
.|+|. .++.+|..+++.+.|+.+|+||-=-... ... -+|.+..
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~-~~~---isFtv~~ 46 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS-PEE---VIFTVDG 46 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec-CCC---EEEEEch
Confidence 45555 3466999999999999999999865222 222 3477643
No 315
>PRK00907 hypothetical protein; Provisional
Probab=37.69 E-value=1.5e+02 Score=22.53 Aligned_cols=64 Identities=9% Similarity=0.040 Sum_probs=44.8
Q ss_pred eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEE----EecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMV----NTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I----~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
.+-+.|.+.++++|...|..++..+.-......+ +..|.-..-++.|+= ++.++++.|-++|.+
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a------ts~eQld~iY~~L~~ 84 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA------ESREQYDAAHQALRD 84 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhh
Confidence 4889999999999999999999988766655555 445544444443332 123677888887753
No 316
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=36.86 E-value=5.7e+02 Score=27.62 Aligned_cols=34 Identities=9% Similarity=0.109 Sum_probs=26.9
Q ss_pred CCeEEEEEEe---CCCccHHHHHHHHHHhCCCcEEEE
Q 020194 114 EEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNA 147 (329)
Q Consensus 114 ~~~~~i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A 147 (329)
.+-+.|+|.+ .+.+|++++|...|+++|++|.--
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I 356 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI 356 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE
Confidence 3455667753 368999999999999999999644
No 317
>PRK08841 aspartate kinase; Validated
Probab=35.93 E-value=1.1e+02 Score=29.62 Aligned_cols=63 Identities=5% Similarity=0.154 Sum_probs=44.0
Q ss_pred CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhcc
Q 020194 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (329)
Q Consensus 25 ~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~ 96 (329)
.+...|++.+...||+.+++..+|...|+||.... ... .-.+|.|...+. .+..+.|.+.+..
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~---~s~-~~is~vv~~~~~-----~~av~~lH~~f~~ 378 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS---TEP-QSSMLVLDPANV-----DRAANILHKTYVT 378 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE---CCC-cEEEEEEeHHHH-----HHHHHHHHHHHcC
Confidence 46789999999999999999999999999995332 233 333466543222 2456666666644
No 318
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=33.49 E-value=3.5e+02 Score=27.24 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=42.3
Q ss_pred CCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 248 ~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
......+.|.-+||||=|.++++++... ||...+-.-.+.....+|..-.- .+++..++|.+.|.+
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~-----~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQL-----SNPQERQEILARLND 387 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 3578899999999999999999999985 44443332222222334433222 234567788887753
No 319
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=31.94 E-value=6.8e+02 Score=26.97 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=64.2
Q ss_pred CeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194 115 EHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (329)
Q Consensus 115 ~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (329)
+...|+|.+. +.+|.++++..+|+++|++|..-...+ ....-.|.+.. ...+.+.+.|.+ +..
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~--s~~sis~~i~~----------~~~~~~~~~l~~-~~~- 381 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHP--DRQLLQLAYTS----------EVADSALKLLDD-AAL- 381 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecC--CCcEEEEEEeH----------HHHHHHHHHHHh-hcC-
Confidence 4556677665 778899999999999999987543322 22223343332 122333333332 110
Q ss_pred CCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC---CCcchHHHH
Q 020194 192 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFDI 268 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~---DrpGLL~~I 268 (329)
. .+|.+. ....+|.|.+. .+||+..++
T Consensus 382 -~----------------------------------------------~~i~v~---~~~a~VsvVG~gm~~~~gv~~~~ 411 (810)
T PRK09466 382 -P----------------------------------------------GELKLR---EGLALVALVGAGVTRNPLHCHRF 411 (810)
T ss_pred -C----------------------------------------------CcEEEe---CCeEEEEEeCCCcccCccHHHHH
Confidence 0 112222 25677888874 689999999
Q ss_pred HHHHhcCCeEEEEE
Q 020194 269 VCTLTDMQYVVFHG 282 (329)
Q Consensus 269 ~~~l~~~~i~I~~a 282 (329)
..+|.+.||++..-
T Consensus 412 f~aL~~~~I~ii~~ 425 (810)
T PRK09466 412 YQQLKDQPVEFIWQ 425 (810)
T ss_pred HHHHHhCCCcEEEE
Confidence 99999999988443
No 320
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=31.52 E-value=97 Score=23.24 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=33.4
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCC
Q 020194 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPI 305 (329)
Q Consensus 250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l 305 (329)
..+.+.+...|+..+-. +...+.+.|+.+...-.....++ .|+++|++|..+
T Consensus 59 ~~~~~~~~v~~~~~~~~-~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAAVDA-LYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRL 110 (114)
T ss_pred CceEEEEEcCCHHHHHH-HHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEE
Confidence 34566777777666644 44455568888876433322233 589999999875
No 321
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=29.58 E-value=1.4e+02 Score=22.35 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=34.4
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 020194 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (329)
Q Consensus 26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~ 81 (329)
+...+.+...|...+ ..+...+..+|.+|...-.....|+ .|++.||+|+.+
T Consensus 59 ~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRL 110 (114)
T ss_pred CceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEE
Confidence 456677777764444 5566667789999986543333344 367889999854
No 322
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=28.90 E-value=4.3e+02 Score=23.76 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=66.9
Q ss_pred CCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEE----EEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhcccc
Q 020194 23 TCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKK----AYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDA 98 (329)
Q Consensus 23 ~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~----A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~ 98 (329)
+..-...|...+.|+....+.|-.+|..+|.++-. +.+|...|.+. |. ..+ .. ..+.++.+|+...
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~kG~i~--~~---~~~--~~---~d~~~e~aieaGA 161 (238)
T TIGR01033 92 PGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSRKGVIE--VP---KNE--VD---EEDLMEAAIEAGA 161 (238)
T ss_pred CCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeecceEEE--EC---CCC--CC---HHHHHHHHHhCCC
Confidence 44456688889999999999999999999999853 34455555554 32 111 11 1223344454321
Q ss_pred CCCCCcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEE
Q 020194 99 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (329)
Q Consensus 99 ~~~~~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~ 150 (329)
. -+..+. +. +.|+|. |--|..+...|...|+.|.++.+.
T Consensus 162 e-------dv~~~~--~~--~~v~~~--~~~~~~v~~~L~~~g~~i~~sei~ 200 (238)
T TIGR01033 162 E-------DIDVDD--DE--FEVYTA--PEELEKVKEALEAKGFPIESAEIT 200 (238)
T ss_pred c-------eeeccC--Cc--EEEEEC--HHHHHHHHHHHHHcCCCceeeEEE
Confidence 1 011111 22 555554 577999999999999999977775
No 323
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=27.30 E-value=3.8e+02 Score=22.56 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=37.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec---CCe--EEEEEEEE
Q 020194 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG---RTE--AYQEFYIR 298 (329)
Q Consensus 251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~---g~~--~~D~F~v~ 298 (329)
...|.|.-+|+||=|-.+-+=|+..|.||...-=+-. |.+ +.=+|-..
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 4568889999999999999999999999976654332 544 66667553
No 324
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.24 E-value=1.5e+02 Score=21.64 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=38.4
Q ss_pred CCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 020194 259 KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER 324 (329)
Q Consensus 259 ~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~ 324 (329)
.-..|++..+.++|.++|+++++.- | ..|.|-|.=. ...+.++ ..+++.+.|...+.+
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~P--S----GID~~Siii~-~~~~~~~-~~~~i~~~i~~~~~p 69 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHMP--S----GIDDISIIIR-DNQLTDE-KEQKILAEIKEELHP 69 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeeec--C----CCccEEEEEE-ccccchh-hHHHHHHHHHHhcCC
Confidence 3467999999999999999999864 2 2333444322 3444442 467777777766644
No 325
>PRK00110 hypothetical protein; Validated
Probab=26.41 E-value=4.9e+02 Score=23.56 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=66.7
Q ss_pred CCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEE----EEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhcccc
Q 020194 23 TCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKK----AYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDA 98 (329)
Q Consensus 23 ~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~----A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~ 98 (329)
+..-...|.+.+.|+....+.+-.+|..+|.++-. +.+|...|.+. |. .. + ..+.++.+|+...
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~kG~i~--~~---~~-----~--~d~~~e~aieaGa 159 (245)
T PRK00110 92 PGGVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDRKGVIV--IE---PL-----D--EDELMEAALEAGA 159 (245)
T ss_pred CCCeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEeccceEEE--eC---CC-----C--HHHHHHHHHhCCC
Confidence 34455688899999999999999999999999854 33344445443 21 11 1 1223344554322
Q ss_pred CCCCCcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194 99 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (329)
Q Consensus 99 ~~~~~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t 151 (329)
. +++.+.+ .+.|+|. |--|..+...|...|+.|.++.+.-
T Consensus 160 e---------Dv~~e~~--~~~i~~~--p~~~~~v~~~L~~~g~~~~~sei~~ 199 (245)
T PRK00110 160 E---------DVETDDE--SFEVITA--PEDFEAVRDALEAAGLEAESAEVTM 199 (245)
T ss_pred C---------EeeccCC--eEEEEEC--HHHHHHHHHHHHHcCCCeeeeEEEE
Confidence 1 0111222 2455553 6779999999999999999887763
No 326
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.96 E-value=1.2e+02 Score=22.76 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=34.3
Q ss_pred EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCe-EEEEEEEEeCCCCCC
Q 020194 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE-AYQEFYIRHVDGLPI 305 (329)
Q Consensus 254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~-~~D~F~v~~~~g~~l 305 (329)
+-+...+. +..+.+.|.+.|+.+...-....+.. ....||+.|++|..+
T Consensus 71 i~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~v 120 (125)
T cd07253 71 LCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLI 120 (125)
T ss_pred EEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEE
Confidence 33444444 78889999999999876655433322 346799999999875
No 327
>PRK00341 hypothetical protein; Provisional
Probab=25.37 E-value=2.2e+02 Score=21.48 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=42.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE----ecCCe--EEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN----TGRTE--AYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (329)
Q Consensus 252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~----T~g~~--~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~ 320 (329)
+-+.|.+.+.++|...|.+++..+. .+....+. ..|.- +.-.+++++ .+++..|-++|.+
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s--------~~q~~~iy~~L~~ 83 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATD--------EDQLQDINSALRA 83 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECC--------HHHHHHHHHHHhh
Confidence 7899999999999999999998776 66656443 33433 344444543 3567777777653
No 328
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=24.01 E-value=99 Score=29.97 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=31.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (329)
Q Consensus 118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t 151 (329)
.++|.|.||-||...+...|...++|+....|..
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~ 35 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP 35 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecC
Confidence 4789999999999999999999999999888844
No 329
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=22.88 E-value=1.1e+02 Score=25.55 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=29.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEE
Q 020194 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNA 147 (329)
Q Consensus 115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A 147 (329)
....+.|.-+|+||-|-.+..=|+..|.||..-
T Consensus 4 mritldIEL~D~PGQLl~vLqPls~~g~NiItI 36 (170)
T COG2061 4 MRITLDIELKDKPGQLLKVLQPLSKTGANIITI 36 (170)
T ss_pred eEEEEEEEecCCCcchhhhhcchhhcCccEEEE
Confidence 356788999999999999999999999999853
No 330
>PRK12378 hypothetical protein; Provisional
Probab=21.91 E-value=5.9e+02 Score=22.89 Aligned_cols=105 Identities=17% Similarity=0.187 Sum_probs=66.7
Q ss_pred CCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEE----EEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhcccc
Q 020194 23 TCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKK----AYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDA 98 (329)
Q Consensus 23 ~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~----A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~ 98 (329)
+..-...|.+.+.|+....+.|-.+|..+|.++.. +..|...|.+. | . .. . ..+.++.+|+...
T Consensus 89 PgGvaiiVe~lTDN~nRt~~~vr~~f~K~gg~l~~~gsv~~~Fe~kG~i~--i--~-~~----~---~d~~~e~aieaGa 156 (235)
T PRK12378 89 PNGVMVIVECLTDNVNRTVANVRSAFNKNGGNLGTSGSVAFMFDHKGVFV--F--E-GD----D---EDELLEALIDADV 156 (235)
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHhhcCCeECCCCceeeeeecceEEE--e--C-CC----C---HHHHHHHHHhCCC
Confidence 34456688889999999999999999999999863 33445555543 2 1 11 1 1223344444321
Q ss_pred CCCCCcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEE
Q 020194 99 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (329)
Q Consensus 99 ~~~~~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~ 150 (329)
.. -++..+.+ .+.|+|. |.-|..+...|...|+.+.++.+.
T Consensus 157 ~~-------edv~~~~~--~~~i~t~--p~~~~~v~~~L~~~g~~~~~sei~ 197 (235)
T PRK12378 157 DV-------EDVEEEEG--TITVYTD--PTDFHKVKKALEAAGIEFLVAELE 197 (235)
T ss_pred Cc-------ccccccCC--eEEEEEC--HHHHHHHHHHHHHcCCCceeeEEE
Confidence 10 01111222 3455553 677999999999999999988775
No 331
>PRK14637 hypothetical protein; Provisional
Probab=21.28 E-value=4.8e+02 Score=21.65 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194 127 PGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (329)
Q Consensus 127 ~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (329)
-|-...+..++..+|+.+.+......++......+|.. ..|-. -+.++++-+.+..+|..
T Consensus 8 ~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~-~~gV~---iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 8 LGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYS-AGGVG---LDDCARVHRILVPRLEA 67 (151)
T ss_pred ccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEEC-CCCCC---HHHHHHHHHHHHHHhcc
Confidence 57788999999999999999999998776555566654 23433 36778888888777753
No 332
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=20.62 E-value=3.7e+02 Score=20.03 Aligned_cols=50 Identities=18% Similarity=0.111 Sum_probs=33.2
Q ss_pred CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 020194 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (329)
Q Consensus 26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~ 81 (329)
....+.+...| +..+...|..+|..|...-..+..|.. .|++.+|+|..+
T Consensus 66 ~~~~~~~~v~d----id~~~~~l~~~G~~~~~~~~~~~~g~~--~~~~~DP~G~~i 115 (119)
T cd08359 66 QGLILNFEVDD----VDAEYERLKAEGLPIVLPLRDEPWGQR--HFIVRDPNGVLI 115 (119)
T ss_pred ceEEEEEEECC----HHHHHHHHHhcCCCeeeccccCCCcce--EEEEECCCCCEE
Confidence 34466677766 677888888899998865333333422 366789999743
No 333
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=20.59 E-value=1.5e+02 Score=21.52 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=33.7
Q ss_pred eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCC
Q 020194 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPI 305 (329)
Q Consensus 251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l 305 (329)
...+.+...| +....+.+.+.|+.+....-. ......||+.|++|..+
T Consensus 65 ~~~~~~~v~d----~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~DP~G~~i 112 (114)
T cd07245 65 DDHIAFRVDD----LDAFRARLKAAGVPYTESDVP---GDGVRQLFVRDPDGNRI 112 (114)
T ss_pred cceEEEEeCC----HHHHHHHHHHcCCCcccccCC---CCCccEEEEECCCCCEE
Confidence 3445556666 677889999999998765422 12334689999999875
No 334
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=20.32 E-value=2.8e+02 Score=20.65 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=34.6
Q ss_pred eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCC
Q 020194 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPI 305 (329)
Q Consensus 251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l 305 (329)
...+.+.+.| +.++.+.+.+.|+.+..-.... + ..-.+|+.|++|..+
T Consensus 71 ~~~i~~~v~d----id~~~~~l~~~G~~~~~~~~~~-~--~~~~~~~~DpdG~~i 118 (121)
T cd07233 71 FGHLAFAVDD----VYAACERLEEMGVEVTKPPGDG-G--MKGIAFIKDPDGYWI 118 (121)
T ss_pred eEEEEEEeCC----HHHHHHHHHHCCCEEeeCCccC-C--CceEEEEECCCCCEE
Confidence 3455666777 8889999999999998754322 2 224688999999865
Done!