BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020195
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 343 bits (879), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 163/217 (75%), Positives = 178/217 (82%), Gaps = 7/217 (3%)
Query: 113 DSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAF 172
++ ERIK GF+HFK+EKY+KNPALY ELAKGQSP +MVFACSDSRVCPSHVLDFQPGEAF
Sbjct: 12 EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAF 71
Query: 173 VVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKCRLILLQVSNIVVIGHSACGGIKGLMSF 232
VVRNVAN+VPPYDQ K LHLK VSNIVVIGHSACGGIKGL+SF
Sbjct: 72 VVRNVANLVPPYDQAKYAGTGAAIEYAVLHLK-------VSNIVVIGHSACGGIKGLLSF 124
Query: 233 TFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVR 292
FDG STDFIE+WVKIG+PAK+KV +HGD PF + CT+CEKEAVN SL NLLTYPFVR
Sbjct: 125 PFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVR 184
Query: 293 EGLVNKTLALKGGYYDFVNGSFELWGLDFSLSPPLSV 329
EGLVNKTLALKGGYYDFV GSFELWGL+F LS SV
Sbjct: 185 EGLVNKTLALKGGYYDFVKGSFELWGLEFGLSSTFSV 221
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 16/124 (12%)
Query: 125 FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 184
+++E +++P ++ LA GQSP+Y+ C+DSRV + +LD GE FV RN+AN
Sbjct: 46 WRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIHS 105
Query: 185 DQTKXXXXXXXXXXXXLHLKCRLILLQVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIE 244
D + L+ + L+V +I+V GH CGG K + G++ I+
Sbjct: 106 DISFLSV-----------LQYAVQYLKVKHILVCGHYGCGGAKAAL-----GDSRLGLID 149
Query: 245 DWVK 248
+W++
Sbjct: 150 NWLR 153
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 20/155 (12%)
Query: 96 VEQITAQL--QTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFAC 153
+E++TA+L QTP K + R+ +++++ +++P +S LA Q+P+ + C
Sbjct: 271 MEKLTAELVQQTPGKLK--EGANRVFVNNENWRQKMLKQDPQFFSNLAHTQTPEILWIGC 328
Query: 154 SDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKCRLILLQVS 213
+DSRV + +++ GE FV RN+AN D + L+ + L+V
Sbjct: 329 ADSRVPANQIINLPAGEVFVHRNIANQCIHSDMSFLSV-----------LQYAVQYLKVK 377
Query: 214 NIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVK 248
+VV GH ACGG + G++ I++W++
Sbjct: 378 RVVVCGHYACGGCAAAL-----GDSRLGLIDNWLR 407
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
pdb|3QY1|B Chain B, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
Length = 223
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 23/103 (22%)
Query: 131 EKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXX 190
E++P + +LA+ Q P+++ CSDSRV + +PGE FV RNVAN+V D
Sbjct: 23 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTD----- 77
Query: 191 XXXXXXXXXXLHLKCRLI------LLQVSNIVVIGHSACGGIK 227
L C + +L+V +I++ GHS CGGIK
Sbjct: 78 ------------LNCLSVVQYAVDVLEVEHIIICGHSGCGGIK 108
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 243
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Query: 97 EQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDS 156
++I L + F + + EG ++ R+ + P +E KGQ+P ++ C+DS
Sbjct: 16 DEIDMDLGHSVAAQKFKEIREVLEGNRYWARKVTSEEPEFMAEQVKGQAPNFLWIGCADS 75
Query: 157 RVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKCRLILLQVSNIV 216
RV ++ +PG+ FV RNVAN P D + L ++ + V++++
Sbjct: 76 RVPEVTIMARKPGDVFVQRNVANQFKPEDDSSQAL-----------LNYAIMNVGVTHVM 124
Query: 217 VIGHSACGG 225
V+GH+ CGG
Sbjct: 125 VVGHTGCGG 133
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|B Chain B, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|C Chain C, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 239
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Query: 97 EQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDS 156
++I L + F + + EG ++ R+ + P +E KGQ+P ++ C+DS
Sbjct: 12 DEIDMDLGHSVAAQKFKEIREVLEGNRYWARKVTSEEPEFMAEQVKGQAPNFLWIGCADS 71
Query: 157 RVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKCRLILLQVSNIV 216
RV ++ +PG+ FV RNVAN P D + L ++ + V++++
Sbjct: 72 RVPEVTIMARKPGDVFVQRNVANQFKPEDDSSQAL-----------LNYAIMNVGVTHVM 120
Query: 217 VIGHSACGG 225
V+GH+ CGG
Sbjct: 121 VVGHTGCGG 129
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3I|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|G Chain G, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|H Chain H, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|I Chain I, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|J Chain J, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|K Chain K, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|L Chain L, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
Length = 229
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 17/142 (11%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ ACSDSRV + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIACSDSRVPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKCRLILLQVSNIVVIGHSACGGIKGLMS 231
FV RNVAN V D ++ + +L++ +I++ GH+ CGGI M+
Sbjct: 61 FVHRNVANQVIHTDFNCLSV-----------VQYAVDVLKIEHIIICGHTNCGGIHAAMA 109
Query: 232 FTFDG--NNSTDFIED-WVKIG 250
G NN I D W K G
Sbjct: 110 DKDLGLINNWLLHIRDIWFKHG 131
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
pdb|3E24|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
Length = 229
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ CSDSRV + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLFIGCSDSRVPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKCRLILLQVSNIVVIGHSACGGIKGLMS 231
FV RNVAN V D ++ + +L++ +I++ GH+ CGGI M+
Sbjct: 61 FVHRNVANQVIHTDFNCLSV-----------VQYAVDVLKIEHIIICGHTNCGGIHAAMA 109
Query: 232 FTFDG--NNSTDFIED-WVKIG 250
G NN I D W K G
Sbjct: 110 DKDLGLINNWLLHIRDIWFKHG 131
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8D|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
Length = 229
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ CSDSRV + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKCRLILLQVSNIVVIGHSACGGIKGLMS 231
FV RNVAN V D ++ + +L++ +I++ GH+ CGGI M+
Sbjct: 61 FVHRNVANQVIHTDFNCLSV-----------VQYAVDVLKIEHIIICGHTNCGGIHAAMA 109
Query: 232 FTFDG--NNSTDFIED-WVKIG 250
G NN I D W K G
Sbjct: 110 DKDLGLINNWLLHIRDIWFKHG 131
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|C Chain C, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|D Chain D, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|E Chain E, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|F Chain F, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E2A|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2W|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
Length = 229
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ CSDSRV + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKCRLILLQVSNIVVIGHSACGGIKGLMS 231
FV RNVAN V D ++ + +L++ +I++ GH+ CGGI M+
Sbjct: 61 FVHRNVANQVIHTDFNCLSV-----------VQYAVDVLKIEHIIICGHTNCGGIHAAMA 109
Query: 232 FTFDG--NNSTDFIED-WVKIG 250
G NN I D W K G
Sbjct: 110 DKDLGLINNWLLHIRDIWFKHG 131
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|B Chain B, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|C Chain C, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|D Chain D, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|E Chain E, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|F Chain F, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
Length = 221
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ CSDSRV + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKCRLILLQVSNIVVIGHSACGGIKGLMS 231
FV RNVAN V D ++ + +L++ +I++ GH+ CGGI M+
Sbjct: 61 FVHRNVANQVIHTDFNCLSV-----------VQYAVDVLKIEHIIICGHTNCGGIHAAMA 109
Query: 232 FTFDG--NNSTDFIED-WVKIG 250
G NN I D W K G
Sbjct: 110 DKDLGLINNWLLHIRDIWFKHG 131
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1I6O|B Chain B, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
Length = 220
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 28/123 (22%)
Query: 131 EKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXX 190
E++P + +LA+ Q P+++ CSDSRV + +PGE FV RNVAN+V D
Sbjct: 20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTD----- 74
Query: 191 XXXXXXXXXXLHLKCRLI------LLQVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIE 244
L C + +L+V +I++ GH CGG++ + N I
Sbjct: 75 ------------LNCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVE-----NPELGLIN 117
Query: 245 DWV 247
+W+
Sbjct: 118 NWL 120
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1T75|A Chain A, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|B Chain B, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|D Chain D, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|E Chain E, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|2ESF|A Chain A, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
pdb|2ESF|B Chain B, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
Length = 220
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 23/103 (22%)
Query: 131 EKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXX 190
E++P + +LA+ Q P+++ CSDSRV + +PGE FV RNVAN+V D
Sbjct: 20 EEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTD----- 74
Query: 191 XXXXXXXXXXLHLKCRLI------LLQVSNIVVIGHSACGGIK 227
L C + +L+V +I++ GH CGG++
Sbjct: 75 ------------LNCLSVVQYAVDVLEVEHIIICGHYGCGGVQ 105
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E2X|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E3F|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
pdb|3E3F|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
Length = 229
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 17/142 (11%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ CSDSR + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSRAPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKCRLILLQVSNIVVIGHSACGGIKGLMS 231
FV RNVAN V D ++ + +L++ +I++ GH+ CGGI M+
Sbjct: 61 FVHRNVANQVIHTDFNCLSV-----------VQYAVDVLKIEHIIICGHTNCGGIHAAMA 109
Query: 232 FTFDG--NNSTDFIED-WVKIG 250
G NN I D W K G
Sbjct: 110 DKDLGLINNWLLHIRDIWFKHG 131
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1V|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1W|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
pdb|3E1W|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
Length = 229
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 115 VERIKEGFIH---FKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEA 171
+++IK+ F + + + E+N + ELA Q+P Y+ CS+SRV + + +PGE
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSNSRVPAEKLTNLEPGEL 60
Query: 172 FVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKCRLILLQVSNIVVIGHSACGGIKGLMS 231
FV RNVAN V D ++ + +L++ +I++ GH+ CGGI M+
Sbjct: 61 FVHRNVANQVIHTDFNCLSV-----------VQYAVDVLKIEHIIICGHTNCGGIHAAMA 109
Query: 232 FTFDG--NNSTDFIED-WVKIG 250
G NN I D W K G
Sbjct: 110 DKDLGLINNWLLHIRDIWFKHG 131
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCJ|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCK|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCK|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCM|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCM|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCN|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCN|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCO|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
pdb|3UCO|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
Length = 227
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 23/107 (21%)
Query: 128 EKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 187
E K+ +S++A Q+P+Y+ C+DSRV P+ + + PGE FV RNV N+V D
Sbjct: 22 ECAAKDSTYFSKVAGSQAPEYLYIGCADSRVSPAQLFNMAPGEVFVQRNVGNLVSNKD-- 79
Query: 188 KXXXXXXXXXXXXLHLKCRLIL------LQVSNIVVIGHSACGGIKG 228
L C L L++ +I+V GH CG K
Sbjct: 80 ---------------LNCMSCLEYTVDHLKIKHILVCGHYNCGACKA 111
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 12/91 (13%)
Query: 141 AKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXX 200
AKGQSP + CSDSR + L PGE F +NVANI D T
Sbjct: 40 AKGQSPHTLFIGCSDSRY-NENCLGVLPGEVFTWKNVANICHSEDLTLKAT--------- 89
Query: 201 LHLKCRLILLQVSNIVVIGHSACGGIKGLMS 231
L+ +I L+V+ +++ GH+ CGGIK ++
Sbjct: 90 --LEFAIICLKVNKVIICGHTDCGGIKTCLT 118
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From
Mycobacterium Tuberculosis
Length = 215
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 118 IKEG---FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVV 174
+KEG F+ + + ++ + LA GQ P ++F C+DSRV + D G+ FVV
Sbjct: 21 LKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVV 80
Query: 175 RNVANIVPPYDQTKXXXXXXXXXXXXLHLKCRLILLQVSNIVVIGHSACGGIKGLMSFTF 234
R +++ ++ + +L V IVV+GH +CG + ++
Sbjct: 81 RTAGHVID--------------SAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAIN 126
Query: 235 DGNNSTDFIEDWVK 248
DG ++ D V+
Sbjct: 127 DGTLPGGYVRDVVE 140
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|B Chain B, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|C Chain C, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|D Chain D, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
Length = 213
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 118 IKEG---FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVV 174
+KEG F+ + + ++ + LA GQ P ++F C+DSRV + D G+ FVV
Sbjct: 19 LKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVV 78
Query: 175 RNVANIVPPYDQTKXXXXXXXXXXXXLHLKCRLILLQVSNIVVIGHSACGGIKGLMSFTF 234
R +++ ++ + +L V IVV+GH +CG + ++
Sbjct: 79 RTAGHVID--------------SAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAIN 124
Query: 235 DGNNSTDFIEDWVK 248
DG ++ D V+
Sbjct: 125 DGTLPGGYVRDVVE 138
>pdb|3VQJ|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase
pdb|3VRK|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115
Carbonyl Sulfide Hydrolase / Thiocyanate Complex
Length = 219
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 24/94 (25%)
Query: 145 SPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLK 204
S + V AC D+R+ +L Q GEA ++RN ++ ++
Sbjct: 36 SRRVAVVACMDARLDVEDLLGLQTGEAHIIRNAGGVI-----------------NEDAIR 78
Query: 205 CRLI---LLQVSNIVVIGHSACGGIKGLMSFTFD 235
C +I LL I+++ H+ C G+++FT D
Sbjct: 79 CLIISHHLLNTHEIILVHHTRC----GMLAFTDD 108
>pdb|1YLK|A Chain A, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|B Chain B, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|C Chain C, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|D Chain D, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
Length = 172
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 45/193 (23%)
Query: 128 EKYEKNPALYSELAKGQSP----KYM-VFACSDSRVCPSHVLDFQPGEAFVVRNVANIVP 182
+ Y N Y+ KG P K++ + AC D+R+ +L + GEA V+RN +V
Sbjct: 14 DDYLANNVDYASGFKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVV- 72
Query: 183 PYDQTKXXXXXXXXXXXXLHLKCRLILLQVSNIVVIGHSACGGIKGLMSFTFDGNNSTDF 242
L + R LL I+++ H+ C G+++FT D DF
Sbjct: 73 -----------TDDVIRSLAISQR--LLGTREIILLHHTDC----GMLTFTDD-----DF 110
Query: 243 IEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK-EAVNVSLSNLLTYPFVREGLVNKTLA 301
K + E G +P +Y + E V SL + PF V K +
Sbjct: 111 -----------KRAIQDETGIRPTWSPESYPDAVEDVRQSLRRIEVNPF-----VTKHTS 154
Query: 302 LKGGYYDFVNGSF 314
L+G +D G
Sbjct: 155 LRGFVFDVATGKL 167
>pdb|1G5C|A Chain A, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|B Chain B, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|C Chain C, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|D Chain D, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|E Chain E, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
pdb|1G5C|F Chain F, Crystal Structure Of The 'cab' Type Beta Class Carbonic
Anhydrase From Methanobacterium Thermoautotrophicum
Length = 170
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 16/83 (19%)
Query: 144 QSPKYMVFACSDSRVCP--SHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXL 201
SPK + C DSR+ L G+A V++N NIV
Sbjct: 23 HSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVDD--------------GVIR 68
Query: 202 HLKCRLILLQVSNIVVIGHSACG 224
+ L + I+++GH+ CG
Sbjct: 69 SAAVAIYALGDNEIIIVGHTDCG 91
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 251 IPAKSKVLTEHGDKPFGDQCTYCEK-EAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDF 309
+ AK + + H FG T C + +N L+ E +V++ AL+GG+ D
Sbjct: 139 VTAKLRWIERHEPAVFGAIATVCGSYDYINXLLTG--------ERVVDRNWALEGGFIDL 190
Query: 310 VNGSFELWGLDFSLSPPLSV 329
+G+ E + + PP +V
Sbjct: 191 ASGTVEADLVALAHIPPSAV 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,690,033
Number of Sequences: 62578
Number of extensions: 319542
Number of successful extensions: 778
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 23
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)