Query 020195
Match_columns 329
No_of_seqs 231 out of 1208
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:47:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 9.4E-98 2E-102 717.6 27.6 321 1-329 1-336 (347)
2 PLN03019 carbonic anhydrase 100.0 4.9E-71 1.1E-75 529.9 24.4 258 64-329 71-330 (330)
3 PLN00416 carbonate dehydratase 100.0 2.4E-64 5.2E-69 473.7 23.4 255 66-328 1-256 (258)
4 PLN03006 carbonate dehydratase 100.0 6.5E-61 1.4E-65 456.5 20.4 233 84-325 49-283 (301)
5 cd00884 beta_CA_cladeB Carboni 100.0 1.5E-51 3.2E-56 372.0 16.3 189 121-317 1-190 (190)
6 PRK10437 carbonic anhydrase; P 100.0 2.6E-51 5.7E-56 377.6 18.1 194 114-323 3-197 (220)
7 KOG1578 Predicted carbonic anh 100.0 4.9E-52 1.1E-56 387.1 13.3 259 43-320 2-260 (276)
8 PLN02154 carbonic anhydrase 100.0 4.3E-51 9.3E-56 387.2 19.6 205 110-322 71-275 (290)
9 cd00883 beta_CA_cladeA Carboni 100.0 1.1E-50 2.3E-55 363.9 15.8 180 122-317 1-182 (182)
10 PRK15219 carbonic anhydrase; P 100.0 9.8E-50 2.1E-54 372.5 18.5 190 108-317 50-244 (245)
11 COG0288 CynT Carbonic anhydras 100.0 1.3E-49 2.9E-54 363.6 17.7 199 113-325 2-203 (207)
12 cd03378 beta_CA_cladeC Carboni 100.0 2.3E-45 5E-50 321.8 16.3 150 111-317 1-154 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 4.9E-42 1.1E-46 297.3 10.7 152 148-314 1-153 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 2.2E-40 4.8E-45 278.6 13.9 119 144-317 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 1.7E-37 3.6E-42 268.3 13.2 142 144-317 1-142 (142)
16 KOG1578 Predicted carbonic anh 97.9 1.7E-07 3.7E-12 88.8 -6.8 125 118-249 3-150 (276)
17 PF10070 DUF2309: Uncharacteri 68.3 14 0.00031 40.7 7.1 38 284-321 540-583 (788)
18 PF12778 PXPV: PXPV repeat (3 60.5 4.5 9.7E-05 24.6 0.8 18 41-58 4-21 (22)
19 TIGR02742 TrbC_Ftype type-F co 55.7 38 0.00083 29.2 6.1 56 130-204 57-112 (130)
20 COG1254 AcyP Acylphosphatases 53.8 10 0.00023 30.8 2.2 19 299-317 29-47 (92)
21 PRK14066 exodeoxyribonuclease 37.6 56 0.0012 25.6 4.0 26 66-91 1-28 (75)
22 PF00009 GTP_EFTU: Elongation 33.1 26 0.00056 30.7 1.7 14 212-225 3-16 (188)
23 PF00355 Rieske: Rieske [2Fe-2 31.5 17 0.00037 28.4 0.2 15 302-316 66-80 (97)
24 TIGR01838 PHA_synth_I poly(R)- 30.9 3E+02 0.0066 29.1 9.3 79 48-128 45-136 (532)
25 cd01891 TypA_BipA TypA (tyrosi 30.2 33 0.00071 30.1 1.8 14 212-225 2-15 (194)
26 PF08822 DUF1804: Protein of u 29.7 1.2E+02 0.0027 27.3 5.4 57 68-126 105-161 (165)
27 PRK09778 putative antitoxin of 26.8 86 0.0019 25.9 3.5 74 12-104 6-81 (97)
28 cd03528 Rieske_RO_ferredoxin R 25.1 28 0.0006 27.2 0.4 14 302-315 62-75 (98)
29 cd01890 LepA LepA subfamily. 24.9 41 0.00089 28.4 1.4 13 213-225 1-13 (179)
30 PRK14432 acylphosphatase; Prov 24.0 56 0.0012 26.3 1.9 20 299-318 27-46 (93)
31 cd03478 Rieske_AIFL_N AIFL (ap 24.0 26 0.00056 27.5 0.0 14 302-315 61-74 (95)
32 PF08184 Cuticle_2: Cuticle pr 23.0 41 0.00089 24.4 0.9 13 303-315 7-19 (59)
33 PRK14068 exodeoxyribonuclease 22.9 1.4E+02 0.003 23.4 3.9 23 68-90 5-29 (76)
34 PRK14064 exodeoxyribonuclease 22.6 1.4E+02 0.0031 23.3 3.9 22 69-90 6-29 (75)
35 PRK14440 acylphosphatase; Prov 22.5 66 0.0014 25.7 2.1 19 299-317 28-46 (90)
36 PRK14423 acylphosphatase; Prov 22.1 76 0.0017 25.4 2.4 19 299-317 30-48 (92)
37 PRK14430 acylphosphatase; Prov 22.1 65 0.0014 25.9 2.0 19 299-317 29-47 (92)
38 cd04169 RF3 RF3 subfamily. Pe 21.9 56 0.0012 31.0 1.8 16 212-227 2-17 (267)
39 PF14618 DUF4452: Domain of un 21.9 69 0.0015 28.9 2.3 62 6-67 77-148 (165)
40 PTZ00119 40S ribosomal protein 21.8 3.9E+02 0.0084 26.3 7.4 45 115-159 158-202 (302)
41 PF05952 ComX: Bacillus compet 21.5 86 0.0019 23.4 2.4 25 281-305 5-29 (57)
42 PRK14445 acylphosphatase; Prov 21.4 82 0.0018 25.1 2.4 19 299-317 29-47 (91)
43 cd04160 Arfrp1 Arfrp1 subfamil 21.2 52 0.0011 27.4 1.3 14 214-227 1-14 (167)
44 COG1116 TauB ABC-type nitrate/ 21.1 57 0.0012 31.2 1.7 15 212-226 29-43 (248)
45 cd03548 Rieske_RO_Alpha_OMO_CA 20.9 53 0.0011 27.9 1.3 16 302-317 78-93 (136)
46 KOG2781 U3 small nucleolar rib 20.8 2.7E+02 0.0058 27.0 6.0 67 141-224 78-144 (290)
47 PF04019 DUF359: Protein of un 20.4 2E+02 0.0043 24.5 4.7 76 140-230 6-81 (121)
48 cd04167 Snu114p Snu114p subfam 20.2 58 0.0012 29.2 1.5 13 213-225 1-13 (213)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=9.4e-98 Score=717.58 Aligned_cols=321 Identities=77% Similarity=1.192 Sum_probs=296.9
Q ss_pred CCcccccceeecccccccccccccCCCCc-eEEEecc------------CCCCCCCcccCCccccCCCcccCcchhhHhh
Q 020195 1 MSTASINNWCLTSVSQAQSSLIKSSTLRP-SIVARLN------------SPASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (329)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (329)
|||++|||||+||++++++++++ .++|| ++||+|+ |+++||+||||+||||||+|||||+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 79 (347)
T PLN03014 1 MSTAPLSGFFLTSLSPSQSSLQK-LSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMG 79 (347)
T ss_pred CccccccceeccccCcccccccc-cccCCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhc
Confidence 99999999999999999999977 78899 8999996 1133899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhcCCchhHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 020195 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (329)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~~~--~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (329)
++|||+||++|+|||+||++|+.+|++||+++|+||++.. .+.++|++++|++||++|+++.+.+++++|+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~ 159 (347)
T PLN03014 80 TEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQS 159 (347)
T ss_pred hhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999643 35689999999999999999999999999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcccchhhhHHHHHHHhhhhhhccCcceEEEeccCCCCc
Q 020195 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKCRLILLQVSNIVVIGHSACGG 225 (329)
Q Consensus 146 Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~asLEYAV~~L~~~~~~~~V~~IVV~GHT~CGa 225 (329)
|+++||+||||||+|+.+||++|||+||+||+||+|+++|...|++++++|||||.+|+ |++|||||||+|||
T Consensus 160 P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~-------V~~IVV~GHs~CGa 232 (347)
T PLN03014 160 PKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLK-------VENIVVIGHSACGG 232 (347)
T ss_pred CCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhC-------CCEEEEeCCCCchH
Confidence 99999999999999999999999999999999999999876556679999999999999 99999999999999
Q ss_pred ccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCccccccHHHHHHHHHHHHHHhcChhHHhhhcCCceEEEEE
Q 020195 226 IKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGG 305 (329)
Q Consensus 226 v~A~~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qV~~L~s~P~V~~~v~~~~L~V~G~ 305 (329)
|+|+++..+++....++|++|+..+.|++.+...+.+...+.+++..++++||++||++|++||+|++++++|+|.||||
T Consensus 233 V~Aa~~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G~ 312 (347)
T PLN03014 233 IKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGG 312 (347)
T ss_pred HHHHHhccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEE
Confidence 99998765555455689999999999998877666666677788878889999999999999999999999999999999
Q ss_pred EEEccCCeEEEEeccCCCCCCCCC
Q 020195 306 YYDFVNGSFELWGLDFSLSPPLSV 329 (329)
Q Consensus 306 vYDi~TG~v~~v~~d~~~~~~~~~ 329 (329)
+||++||+|++|+.+++++|++++
T Consensus 313 ~YDi~TG~V~~l~~~~~~~~~~~~ 336 (347)
T PLN03014 313 YYDFVKGAFELWGLEFGLSETSSV 336 (347)
T ss_pred EEECCCceEEEeccccccCCcccc
Confidence 999999999999999999999875
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=4.9e-71 Score=529.94 Aligned_cols=258 Identities=79% Similarity=1.259 Sum_probs=235.0
Q ss_pred hHhhhhhHHHHHHHHHHHHhhhcCCchhHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhh
Q 020195 64 EDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELA 141 (329)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~~~--~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La 141 (329)
++|+++|||+||++|+|||+||++|+.+|++||+++|+||++.. .+++++++++|++||++|+.+.+.++|++|++|+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La 150 (330)
T PLN03019 71 RRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELA 150 (330)
T ss_pred HHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhhc
Confidence 45889999999999999999999999999999999999999743 3568999999999999999999989999999999
Q ss_pred cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcccchhhhHHHHHHHhhhhhhccCcceEEEeccC
Q 020195 142 KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKCRLILLQVSNIVVIGHS 221 (329)
Q Consensus 142 ~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~asLEYAV~~L~~~~~~~~V~~IVV~GHT 221 (329)
+||+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...+++++++|||||.+|+ |++|||||||
T Consensus 151 ~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~-------V~~IVV~GHs 223 (330)
T PLN03019 151 KGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLK-------VENIVVIGHS 223 (330)
T ss_pred cCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhC-------CCEEEEecCC
Confidence 999999999999999999999999999999999999999999887667789999999999999 9999999999
Q ss_pred CCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCccccccHHHHHHHHHHHHHHhcChhHHhhhcCCceE
Q 020195 222 ACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLA 301 (329)
Q Consensus 222 ~CGav~A~~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qV~~L~s~P~V~~~v~~~~L~ 301 (329)
+||||+|+++..+++....++|++|++.+.|++.++....+...+.+++..+++ ||++||++|+++|+|++++++|+|.
T Consensus 224 ~CGaVkAal~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~ 302 (330)
T PLN03019 224 ACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLA 302 (330)
T ss_pred CchHHHHHHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcE
Confidence 999999998765555555689999999999988776554444456666655655 9999999999999999999999999
Q ss_pred EEEEEEEccCCeEEEEeccCCCCCCCCC
Q 020195 302 LKGGYYDFVNGSFELWGLDFSLSPPLSV 329 (329)
Q Consensus 302 V~G~vYDi~TG~v~~v~~d~~~~~~~~~ 329 (329)
||||+||++||+|++|+.+++++|++++
T Consensus 303 I~G~~YDl~TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 303 LKGGYYDFVNGSFELWELQFGISPVHSI 330 (330)
T ss_pred EEEEEEECCCceEEEEccccCcCCCCcC
Confidence 9999999999999999999999999986
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=2.4e-64 Score=473.69 Aligned_cols=255 Identities=62% Similarity=1.057 Sum_probs=229.1
Q ss_pred hhhhhHHHHHHHHHHHHhhhcCCchhHhHhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 020195 66 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (329)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~~~~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (329)
|+.+||+++|.+|.+||+.+++++.++++|+.-++++|++.. .+|.++|++|++||+||+.+++.+++++|++++.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 789999999999999999999999999999999999999986 6799999999999999999998888999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcccchhhhHHHHHHHhhhhhhccCcceEEEeccCCCCc
Q 020195 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKCRLILLQVSNIVVIGHSACGG 225 (329)
Q Consensus 146 Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~asLEYAV~~L~~~~~~~~V~~IVV~GHT~CGa 225 (329)
|+++|||||||||+|+.|||.+|||+||+||+||+|+++|...++++.++||||+.+|+ |++|||||||+|||
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~-------V~~IVV~GHs~CGa 152 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLK-------VENILVIGHSCCGG 152 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhC-------CCEEEEecCCCchH
Confidence 99999999999999999999999999999999999999876445678999999999999 99999999999999
Q ss_pred ccccccccCCC-CCCchhHHHHHHcccchhhhhhhhcCCCCccccccHHHHHHHHHHHHHHhcChhHHhhhcCCceEEEE
Q 020195 226 IKGLMSFTFDG-NNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKG 304 (329)
Q Consensus 226 v~A~~~~~~~g-~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qV~~L~s~P~V~~~v~~~~L~V~G 304 (329)
|+|+++..+.. ....+++..|+..+.|++..........++.+.+..++++||++|+++|++||+|++++++|++.|||
T Consensus 153 V~Aa~~~~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G 232 (258)
T PLN00416 153 IKGLMSIEDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRG 232 (258)
T ss_pred HHHHHhccccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEE
Confidence 99988643221 12246899999988888766554444445556666788899999999999999999999999999999
Q ss_pred EEEEccCCeEEEEeccCCCCCCCC
Q 020195 305 GYYDFVNGSFELWGLDFSLSPPLS 328 (329)
Q Consensus 305 ~vYDi~TG~v~~v~~d~~~~~~~~ 328 (329)
|+||++||+|++++++++.+|...
T Consensus 233 ~~Ydl~TG~v~~~~~~~~~~p~~~ 256 (258)
T PLN00416 233 GHYNFVKGTFDLWELDFKTTPAFA 256 (258)
T ss_pred EEEECCCceEEEeccCcCCCCCcc
Confidence 999999999999999999998753
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=6.5e-61 Score=456.49 Aligned_cols=233 Identities=42% Similarity=0.795 Sum_probs=208.6
Q ss_pred hhcCCchhHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChh
Q 020195 84 EKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPS 161 (329)
Q Consensus 84 ~~~~~~~~~~~~~~~~t~~l~~~~--~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe 161 (329)
+..+|+.+|++|++++|+||++.. ...+++++++|++||.+|+..++.+++++|++|++||+|+++||+||||||+|+
T Consensus 49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe 128 (301)
T PLN03006 49 KATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPS 128 (301)
T ss_pred cccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHH
Confidence 456889999999999999999754 345799999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEeccCCcCCCCCCCcccchhhhHHHHHHHhhhhhhccCcceEEEeccCCCCcccccccccCCCCCCch
Q 020195 162 HVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKCRLILLQVSNIVVIGHSACGGIKGLMSFTFDGNNSTD 241 (329)
Q Consensus 162 ~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~asLEYAV~~L~~~~~~~~V~~IVV~GHT~CGav~A~~~~~~~g~~~~~ 241 (329)
.|||++|||+|||||+||+|++++.+. .++.++|||||.+|+ |++|||||||+||||+|+++..+.+ ...+
T Consensus 129 ~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~-------V~~IVV~GHs~CGaV~Aal~~~~~g-~~~~ 199 (301)
T PLN03006 129 AVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLN-------VENILVIGHSRCGGIQALMKMEDEG-DSRS 199 (301)
T ss_pred HHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhC-------CCEEEEecCCCchHHHHHhhccccC-Cchh
Confidence 999999999999999999999987542 568999999999999 9999999999999999998765544 3467
Q ss_pred hHHHHHHcccchhhhhhhhcCCCCccccccHHHHHHHHHHHHHHhcChhHHhhhcCCceEEEEEEEEccCCeEEEEeccC
Q 020195 242 FIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDF 321 (329)
Q Consensus 242 ~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qV~~L~s~P~V~~~v~~~~L~V~G~vYDi~TG~v~~v~~d~ 321 (329)
+|++|+..+.+++..+........+++++..++++||++||++|++||+|++++++|+|.||||+||+.||+|+.|++++
T Consensus 200 ~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~ 279 (301)
T PLN03006 200 FIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDY 279 (301)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEecccc
Confidence 99999998888876654433344567778889999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 020195 322 SLSP 325 (329)
Q Consensus 322 ~~~~ 325 (329)
+++.
T Consensus 280 ~~~~ 283 (301)
T PLN03006 280 AASR 283 (301)
T ss_pred cccc
Confidence 7764
No 5
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.5e-51 Score=372.04 Aligned_cols=189 Identities=51% Similarity=0.812 Sum_probs=165.3
Q ss_pred HHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCC-cccchhhhHHHH
Q 020195 121 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT-KYAGVGAAVEYA 199 (329)
Q Consensus 121 GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~-~~~~v~asLEYA 199 (329)
||++|++..+..++++|+++++||+|+++||+||||||+|+.+||.+|||+||+||+||+|++++.+ .+.++.++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999888889999999999999999999999999999999999999999999999999987542 345789999999
Q ss_pred HHHhhhhhhccCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCccccccHHHHHHHH
Q 020195 200 VLHLKCRLILLQVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVN 279 (329)
Q Consensus 200 V~~L~~~~~~~~V~~IVV~GHT~CGav~A~~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~ 279 (329)
|.+|+ |++|||||||+||||+|+++... +....+++..|+..+.|+........+..+..+....++++||.
T Consensus 81 v~~l~-------v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~ 152 (190)
T cd00884 81 VAVLK-------VEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVL 152 (190)
T ss_pred HHHhC-------CCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 99999 99999999999999999986433 12335689999999888887655443333444556678899999
Q ss_pred HHHHHHhcChhHHhhhcCCceEEEEEEEEccCCeEEEE
Q 020195 280 VSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELW 317 (329)
Q Consensus 280 ~qV~~L~s~P~V~~~v~~~~L~V~G~vYDi~TG~v~~v 317 (329)
+|+++|+++|+|++++++|+|.||||+||+.||+|+.+
T Consensus 153 ~qv~~L~~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 153 LSLENLLTYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred HHHHHHHhCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 99999999999999999999999999999999999864
No 6
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=2.6e-51 Score=377.59 Aligned_cols=194 Identities=24% Similarity=0.384 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcccchh
Q 020195 114 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG 193 (329)
Q Consensus 114 ~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ 193 (329)
.+++|++||++|++..+..++++|++++++|+|+++|||||||||+|+.+||.+|||+||+||+||+|++.+. ++.
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 4889999999999998888899999999999999999999999999999999999999999999999998754 488
Q ss_pred hhHHHHHHHhhhhhhccCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCccccccHH
Q 020195 194 AAVEYAVLHLKCRLILLQVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYC 273 (329)
Q Consensus 194 asLEYAV~~L~~~~~~~~V~~IVV~GHT~CGav~A~~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~ 273 (329)
++|||||.+|+ |++|||||||+||||+|+++.. ..++++.|+..+.|++..........+..+.+..+
T Consensus 79 ~~leyAV~~L~-------v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l 146 (220)
T PRK10437 79 SVVQYAVDVLE-------VEHIIICGHYGCGGVQAAVENP-----ELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTL 146 (220)
T ss_pred HHHHHHHHHcC-------CCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHHHHHHHHHHHHHHhccCChHHHHHHH
Confidence 99999999999 9999999999999999998642 23689999999888876544333333444566778
Q ss_pred HHHHHHHHHHHHhcChhHHhhhcCC-ceEEEEEEEEccCCeEEEEeccCCC
Q 020195 274 EKEAVNVSLSNLLTYPFVREGLVNK-TLALKGGYYDFVNGSFELWGLDFSL 323 (329)
Q Consensus 274 ~~enV~~qV~~L~s~P~V~~~v~~~-~L~V~G~vYDi~TG~v~~v~~d~~~ 323 (329)
+++||+.|+++|+++|+|++++++| +|.||||+||++||+|+.++.....
T Consensus 147 ~e~NV~~qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~ 197 (220)
T PRK10437 147 CELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATN 197 (220)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCc
Confidence 8999999999999999999999999 6999999999999999998876543
No 7
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-52 Score=387.05 Aligned_cols=259 Identities=46% Similarity=0.740 Sum_probs=247.3
Q ss_pred CcccCCccccCCCcccCcchhhHhhhhhHHHHHHHHHHHHhhhcCCchhHhHhhHHHHHhhcCCCCCChHHHHHHHHHHH
Q 020195 43 SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGF 122 (329)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~~~~~~p~~~l~~Ll~GN 122 (329)
.|+|+.+.|..+.+...+.+..||...+|+.+++.+.++|..+.++ ++++|++++|++ .+.+++|+++|
T Consensus 2 ~i~~~~~~~~~t~~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~F 70 (276)
T KOG1578|consen 2 EILRGVIRFRNTTRKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMF 70 (276)
T ss_pred ccccccchhhhhhHHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhH
Confidence 3889999999999999998899999999999999999999999999 999999999993 57899999999
Q ss_pred HHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcccchhhhHHHHHHH
Q 020195 123 IHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLH 202 (329)
Q Consensus 123 ~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~asLEYAV~~ 202 (329)
..|..+.+.++|.+|..++++|+|+++||+|+||||+|++|++++|||+|++||++|+|+|.|..++.+++|+|||||.+
T Consensus 71 v~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 71 VVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred hhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred hhhhhhccCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCccccccHHHHHHHHHHH
Q 020195 203 LKCRLILLQVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSL 282 (329)
Q Consensus 203 L~~~~~~~~V~~IVV~GHT~CGav~A~~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qV 282 (329)
|+ |++|+||||++|||++++|....++. ...|+++|+.+..+++..++.......+.+||..|+.++++.++
T Consensus 151 lk-------venIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~ 222 (276)
T KOG1578|consen 151 LK-------VENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSL 222 (276)
T ss_pred hc-------cceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999877665 67899999999999988888888888999999999999999999
Q ss_pred HHHhcChhHHhhhcCCceEEEEEEEEccCCeEEEEecc
Q 020195 283 SNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLD 320 (329)
Q Consensus 283 ~~L~s~P~V~~~v~~~~L~V~G~vYDi~TG~v~~v~~d 320 (329)
.+|.+||++++++.++.+.+||++||+..|.+++|.+|
T Consensus 223 ~~l~sy~~vr~~v~k~~l~~~G~~Y~fskg~~~~~~ld 260 (276)
T KOG1578|consen 223 ARLLSYPFVREAVVKGFLQVHGGYYNFSKGTKEFWELD 260 (276)
T ss_pred HHHhcChHHHHHHhhcceeeeeeeEEeccCceeEEEec
Confidence 99999999999999999999999999999999999999
No 8
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=4.3e-51 Score=387.20 Aligned_cols=205 Identities=41% Similarity=0.753 Sum_probs=176.7
Q ss_pred ChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcc
Q 020195 110 KAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKY 189 (329)
Q Consensus 110 ~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~ 189 (329)
...+.|++|++||++|+..++..+++.|++|+.||+|+++||+|+||||+|+.|||++|||+||+||+||+|++++.. .
T Consensus 71 ~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g-~ 149 (290)
T PLN02154 71 TSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG-P 149 (290)
T ss_pred hhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-c
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999997642 2
Q ss_pred cchhhhHHHHHHHhhhhhhccCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCcccc
Q 020195 190 AGVGAAVEYAVLHLKCRLILLQVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQ 269 (329)
Q Consensus 190 ~~v~asLEYAV~~L~~~~~~~~V~~IVV~GHT~CGav~A~~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~ 269 (329)
.++.++|||||.+|+ |++|||||||+||||+|+++.........+++++|+..+.+++.+.....+...+++.
T Consensus 150 ~~~~aslEyAv~~L~-------v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~ 222 (290)
T PLN02154 150 TETNSALEFAVTTLQ-------VENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQ 222 (290)
T ss_pred cchhhHHHHHHHHhC-------CCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHH
Confidence 468999999999999 9999999999999999998743222234578999998766655433222223345566
Q ss_pred ccHHHHHHHHHHHHHHhcChhHHhhhcCCceEEEEEEEEccCCeEEEEeccCC
Q 020195 270 CTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFS 322 (329)
Q Consensus 270 ~~~~~~enV~~qV~~L~s~P~V~~~v~~~~L~V~G~vYDi~TG~v~~v~~d~~ 322 (329)
+..++++||+.||++|++||+|++++++|+|.||||+||+.||+|+.|+.+.+
T Consensus 223 ~~~~e~~NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~ 275 (290)
T PLN02154 223 CRNCEKESIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD 275 (290)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC
Confidence 67788899999999999999999999999999999999999999999988764
No 9
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.1e-50 Score=363.94 Aligned_cols=180 Identities=31% Similarity=0.502 Sum_probs=157.1
Q ss_pred HHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcccchhhhHHHHHH
Q 020195 122 FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVL 201 (329)
Q Consensus 122 N~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~asLEYAV~ 201 (329)
|++|++.++.++|++|++++.||+|+++|||||||||+|+.+||.+|||+||+||+||+|++++. ++.+||||||.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999998754 48899999999
Q ss_pred HhhhhhhccCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCC-CccccccHHHHHHHHH
Q 020195 202 HLKCRLILLQVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDK-PFGDQCTYCEKEAVNV 280 (329)
Q Consensus 202 ~L~~~~~~~~V~~IVV~GHT~CGav~A~~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~-~~~e~~~~~~~enV~~ 280 (329)
+|| |++|||||||+|||++|+++.. ..+++.+|+....++........... +..+....++++||++
T Consensus 77 ~L~-------v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~ 144 (182)
T cd00883 77 VLK-------VKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVE 144 (182)
T ss_pred hcC-------CCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 999 9999999999999999987642 24689999988777665433222221 2334456788999999
Q ss_pred HHHHHhcChhHHhhhcC-CceEEEEEEEEccCCeEEEE
Q 020195 281 SLSNLLTYPFVREGLVN-KTLALKGGYYDFVNGSFELW 317 (329)
Q Consensus 281 qV~~L~s~P~V~~~v~~-~~L~V~G~vYDi~TG~v~~v 317 (329)
|+++|+++|+|++++++ ++|.||||+||++||+|+.+
T Consensus 145 ~v~~L~~~p~i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 145 QVKNLCKTPIVQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred HHHHHhhCHHHHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 99999999999999999 89999999999999998753
No 10
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=9.8e-50 Score=372.49 Aligned_cols=190 Identities=22% Similarity=0.325 Sum_probs=161.7
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCChhhH---HhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCC
Q 020195 108 DTKAFDSVERIKEGFIHFKREKYEKNPALY---SELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 184 (329)
Q Consensus 108 ~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~---~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~ 184 (329)
..+|.+++++|++||+||+++.+. +++++ .++++||+|+++||+||||||+||.+||.+|||+||+||+||+|++
T Consensus 50 ~~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~- 127 (245)
T PRK15219 50 KMTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND- 127 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc-
Confidence 378999999999999999998864 34433 2467899999999999999999999999999999999999999964
Q ss_pred CCCcccchhhhHHHHHHHhhhhhhccCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhc-CC
Q 020195 185 DQTKYAGVGAAVEYAVLHLKCRLILLQVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEH-GD 263 (329)
Q Consensus 185 d~~~~~~v~asLEYAV~~L~~~~~~~~V~~IVV~GHT~CGav~A~~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~-~~ 263 (329)
++.+||||||.+|+ |++|||||||+||||+|+++... .+++..|++.+.|++....... ..
T Consensus 128 ------~~~~slEyAv~~L~-------v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~ 189 (245)
T PRK15219 128 ------DLLGSMEFACAVAG-------AKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERS 189 (245)
T ss_pred ------chhhHHHHHHHHcC-------CCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhccccc
Confidence 37889999999999 99999999999999999986432 4689999999888876542211 11
Q ss_pred CCccccccHHHHHHHHHHHHHHhc-ChhHHhhhcCCceEEEEEEEEccCCeEEEE
Q 020195 264 KPFGDQCTYCEKEAVNVSLSNLLT-YPFVREGLVNKTLALKGGYYDFVNGSFELW 317 (329)
Q Consensus 264 ~~~~e~~~~~~~enV~~qV~~L~s-~P~V~~~v~~~~L~V~G~vYDi~TG~v~~v 317 (329)
.+..+.+..++++||+.|+++|++ +|++++++++|+|.||||+||++||+|+++
T Consensus 190 ~~~~~~~~~~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 190 SKNYKFVDAVARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 123345567889999999999986 789999999999999999999999999986
No 11
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-49 Score=363.63 Aligned_cols=199 Identities=32% Similarity=0.493 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHHhhh-cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcccc
Q 020195 113 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAG 191 (329)
Q Consensus 113 ~~l~~Ll~GN~rF~~~~~~~~p~~~~~La-~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~ 191 (329)
..+++|++||++|.++.+..++.+|+.++ ++|+|+++|||||||||+||.+||++|||+||+||+||+|++++ .+
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~----~~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD----GS 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc----cc
Confidence 46899999999999999888899998876 56999999999999999999999999999999999999999875 35
Q ss_pred hhhhHHHHHHHhhhhhhccCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCcc-ccc
Q 020195 192 VGAAVEYAVLHLKCRLILLQVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFG-DQC 270 (329)
Q Consensus 192 v~asLEYAV~~L~~~~~~~~V~~IVV~GHT~CGav~A~~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~-e~~ 270 (329)
+++||||||.+|| |++|||||||+|||++|++.....+.. .+..|+....+.........+..... +..
T Consensus 78 ~l~sleyAv~~L~-------v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~ 147 (207)
T COG0288 78 VLRSLEYAVYVLG-------VKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRS 147 (207)
T ss_pred hhHHHHHHHHHcC-------CCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhh
Confidence 9999999999999 999999999999999999876554432 58999977666554333222221211 444
Q ss_pred cHHHHHHHHHHHHHHhcChhHHhhhcCCc-eEEEEEEEEccCCeEEEEeccCCCCC
Q 020195 271 TYCEKEAVNVSLSNLLTYPFVREGLVNKT-LALKGGYYDFVNGSFELWGLDFSLSP 325 (329)
Q Consensus 271 ~~~~~enV~~qV~~L~s~P~V~~~v~~~~-L~V~G~vYDi~TG~v~~v~~d~~~~~ 325 (329)
...++.||++||++|+++|.|+.++..++ |.||||+||++||+++.++......+
T Consensus 148 ~~~~e~nV~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~~~ 203 (207)
T COG0288 148 DELVEDNVREQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATIDFE 203 (207)
T ss_pred hhHHHHHHHHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccccc
Confidence 56678999999999999999999887776 99999999999999998887665433
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.3e-45 Score=321.76 Aligned_cols=150 Identities=35% Similarity=0.531 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHHHHhhhccC---ChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCC
Q 020195 111 AFDSVERIKEGFIHFKREKYEK---NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 187 (329)
Q Consensus 111 p~~~l~~Ll~GN~rF~~~~~~~---~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~ 187 (329)
|.+++++|++||++|.+++... .++.|.+++++|+|+++||||||||++|+.+||++|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 5678999999999999876421 256688899999999999999999999999999999999999999999975
Q ss_pred cccchhhhHHHHHHHhhhhhhccCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCcc
Q 020195 188 KYAGVGAAVEYAVLHLKCRLILLQVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFG 267 (329)
Q Consensus 188 ~~~~v~asLEYAV~~L~~~~~~~~V~~IVV~GHT~CGav~A~~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~ 267 (329)
++.++||||+.+|+ |++|||||||+||+++++
T Consensus 77 ---~~~~sl~yav~~l~-------v~~IvV~GHt~CG~~~a~-------------------------------------- 108 (154)
T cd03378 77 ---DVLGSLEYAVEVLG-------VPLVVVLGHESCGAVAAA-------------------------------------- 108 (154)
T ss_pred ---hHHHHHHHHHHHhC-------CCEEEEEcCCCccHHHHH--------------------------------------
Confidence 37899999999999 999999999999998863
Q ss_pred ccccHHHHHHHHHHHHHHhcChhHHh-hhcCCceEEEEEEEEccCCeEEEE
Q 020195 268 DQCTYCEKEAVNVSLSNLLTYPFVRE-GLVNKTLALKGGYYDFVNGSFELW 317 (329)
Q Consensus 268 e~~~~~~~enV~~qV~~L~s~P~V~~-~v~~~~L~V~G~vYDi~TG~v~~v 317 (329)
+.++||++|+++|+++|+|++ ++++|++.||||+||++||+|+++
T Consensus 109 -----~~~~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 109 -----AVRANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred -----HHHHHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 347899999999999999988 999999999999999999999863
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=4.9e-42 Score=297.33 Aligned_cols=152 Identities=34% Similarity=0.564 Sum_probs=121.4
Q ss_pred EEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcccchhhhHHHHHHHhhhhhhccCcceEEEeccCCCCccc
Q 020195 148 YMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKCRLILLQVSNIVVIGHSACGGIK 227 (329)
Q Consensus 148 ~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~asLEYAV~~L~~~~~~~~V~~IVV~GHT~CGav~ 227 (329)
++||||||||++|+.+||.+|||+||+||+||+|++.+ .+++++||||+.+|+ +++|||||||+|||++
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~----~~~~~sle~av~~l~-------v~~IiV~gHt~CGa~~ 69 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD----DSALASLEYAVYHLG-------VKEIIVCGHTDCGAIK 69 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-----HHHHHHHHHHHHTST--------SEEEEEEETT-HHHH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc----cchhhheeeeeecCC-------CCEEEEEcCCCchHHH
Confidence 58999999999999999999999999999999998864 468999999999999 9999999999999999
Q ss_pred ccccccCCCCCCchhHHHHHHcccchhhhhhhhc-CCCCccccccHHHHHHHHHHHHHHhcChhHHhhhcCCceEEEEEE
Q 020195 228 GLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEH-GDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGY 306 (329)
Q Consensus 228 A~~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~-~~~~~~e~~~~~~~enV~~qV~~L~s~P~V~~~v~~~~L~V~G~v 306 (329)
+++...+ ..+.+++|++...|+......+. ......+.....+++||++||++|+++|+|+++++++++.||||+
T Consensus 70 ~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ 145 (153)
T PF00484_consen 70 AALDSEE----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFV 145 (153)
T ss_dssp HHHHHSH----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEE
T ss_pred HHHhhcc----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEE
Confidence 8765321 24689999998888776532222 111111222344789999999999999999999999999999999
Q ss_pred EEccCCeE
Q 020195 307 YDFVNGSF 314 (329)
Q Consensus 307 YDi~TG~v 314 (329)
||++||+|
T Consensus 146 ydi~tG~v 153 (153)
T PF00484_consen 146 YDIKTGKV 153 (153)
T ss_dssp EETTTTEE
T ss_pred EECCCccC
Confidence 99999986
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.2e-40 Score=278.56 Aligned_cols=119 Identities=42% Similarity=0.744 Sum_probs=111.8
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcccchhhhHHHHHHHhhhhhhccCcceEEEeccCCC
Q 020195 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKCRLILLQVSNIVVIGHSAC 223 (329)
Q Consensus 144 Q~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~asLEYAV~~L~~~~~~~~V~~IVV~GHT~C 223 (329)
|+|+++||||||||++|+.+||++|||+||+||+||+|++.+ .++++|||||+.+|+ +++|+|||||+|
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~----~~~~~sl~~av~~l~-------v~~ivV~gHt~C 69 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD----LDVLASLEYAVEVLG-------VKHIIVCGHTDC 69 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc----ccHHHHHHHHHHhhC-------CCEEEEEccCCC
Confidence 789999999999999999999999999999999999999864 458999999999999 999999999999
Q ss_pred CcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCccccccHHHHHHHHHHHHHHhcChhHHhhhcCCceEEE
Q 020195 224 GGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALK 303 (329)
Q Consensus 224 Gav~A~~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qV~~L~s~P~V~~~v~~~~L~V~ 303 (329)
||+++ ..++||++|+++|+++|+++++++++++.||
T Consensus 70 G~v~a--------------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~ 105 (119)
T cd00382 70 GAVKA--------------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVH 105 (119)
T ss_pred cHHHH--------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEE
Confidence 98875 2467999999999999999999999999999
Q ss_pred EEEEEccCCeEEEE
Q 020195 304 GGYYDFVNGSFELW 317 (329)
Q Consensus 304 G~vYDi~TG~v~~v 317 (329)
|++||++||+++++
T Consensus 106 G~~ydi~tG~v~~~ 119 (119)
T cd00382 106 GWVYDIETGKLEVL 119 (119)
T ss_pred EEEEECCCCEEEeC
Confidence 99999999999864
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.7e-37 Score=268.29 Aligned_cols=142 Identities=23% Similarity=0.277 Sum_probs=112.6
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcccchhhhHHHHHHHhhhhhhccCcceEEEeccCCC
Q 020195 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKCRLILLQVSNIVVIGHSAC 223 (329)
Q Consensus 144 Q~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~asLEYAV~~L~~~~~~~~V~~IVV~GHT~C 223 (329)
+.++++||||||||++|+.+||.+|||+||+||+||+|++ ++++|||||+.+|| +++|+|||||+|
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~-------~~~IiV~gHt~C 66 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLG-------TREIIVIHHTDC 66 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhC-------CCEEEEEeecCC
Confidence 3679999999999999999999999999999999999986 37889999999999 999999999999
Q ss_pred CcccccccccCCCCCCchhHHHHHHcccchhhhhhhhcCCCCccccccHHHHHHHHHHHHHHhcChhHHhhhcCCceEEE
Q 020195 224 GGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALK 303 (329)
Q Consensus 224 Gav~A~~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~~~enV~~qV~~L~s~P~V~~~v~~~~L~V~ 303 (329)
||++++.+ .+..|+............ ...+.......+++||++|+++|+++|++++ +++||
T Consensus 67 g~~~a~~~----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~ 128 (142)
T cd03379 67 GMLTFTDE----------ELKEKMKERGIAEAYGGI---DKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVH 128 (142)
T ss_pred cceEecHH----------HHHHHHHHhcCcchhccc---CcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEE
Confidence 99998542 245566532211100000 0111111224568999999999999999994 89999
Q ss_pred EEEEEccCCeEEEE
Q 020195 304 GGYYDFVNGSFELW 317 (329)
Q Consensus 304 G~vYDi~TG~v~~v 317 (329)
||+||++||+++.+
T Consensus 129 G~~ydi~tG~v~~v 142 (142)
T cd03379 129 GYVYDVKTGKLTEV 142 (142)
T ss_pred EEEEECCCCEEEeC
Confidence 99999999999853
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=97.95 E-value=1.7e-07 Score=88.79 Aligned_cols=125 Identities=28% Similarity=0.434 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhh----------------cCCCCCceEEEeccCCcC
Q 020195 118 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHV----------------LDFQPGEAFVVRNVANIV 181 (329)
Q Consensus 118 Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~i----------------fg~~pGD~FVvRNaGN~V 181 (329)
|+.|..+|+...... ..+++.+-++|.+..++|+|+|.-|... +..+.||.|++||.||.+
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 677888888776432 2256777899999999999999999877 667899999999999999
Q ss_pred CCCCCCcccchh--hhHHHHHHHhhhhhhccCcceEEEeccCCCCcccccccccC--CC---CCCchhHHHHHHc
Q 020195 182 PPYDQTKYAGVG--AAVEYAVLHLKCRLILLQVSNIVVIGHSACGGIKGLMSFTF--DG---NNSTDFIEDWVKI 249 (329)
Q Consensus 182 ~~~d~~~~~~v~--asLEYAV~~L~~~~~~~~V~~IVV~GHT~CGav~A~~~~~~--~g---~~~~~~I~~wl~~ 249 (329)
++... |.... -+=++++ ++|+.--....||+||||++|-+++...+... +. ......++-|+..
T Consensus 80 ~~p~~--f~~~~~~qsp~~l~--i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 80 PNPTL--FGALAKSQSPEPLA--LECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred CChhh--hHHHhccCCCcceE--EEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 87432 11111 1112221 23333333389999999999999997654332 11 1122568888864
No 17
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=68.32 E-value=14 Score=40.74 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=27.5
Q ss_pred HHhcChhHHhhhcCCc------eEEEEEEEEccCCeEEEEeccC
Q 020195 284 NLLTYPFVREGLVNKT------LALKGGYYDFVNGSFELWGLDF 321 (329)
Q Consensus 284 ~L~s~P~V~~~v~~~~------L~V~G~vYDi~TG~v~~v~~d~ 321 (329)
.|.+.|-||+++++.+ -...|+..|..|-+|++++.+.
T Consensus 540 ~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 540 ALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 3455566666665543 4468999999999999998764
No 18
>PF12778 PXPV: PXPV repeat (3 copies)
Probab=60.47 E-value=4.5 Score=24.55 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=13.7
Q ss_pred CCCcccCCccccCCCccc
Q 020195 41 PPSLIRNEPVFAAPAPII 58 (329)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~ 58 (329)
.|..++-+||+.||+|.+
T Consensus 4 ~PVy~~PaPVyvaP~P~~ 21 (22)
T PF12778_consen 4 APVYVAPAPVYVAPAPVY 21 (22)
T ss_pred CCEEeccCceeecCCCcc
Confidence 566777888888888764
No 19
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=55.72 E-value=38 Score=29.19 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=37.5
Q ss_pred ccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcccchhhhHHHHHHHhh
Q 020195 130 YEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLK 204 (329)
Q Consensus 130 ~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~asLEYAV~~L~ 204 (329)
..-||.+|++..-.+-| ++|+.|.+..+..+.. ..+++-.++ .||+ +|+||++.+.
T Consensus 57 v~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d~v--~Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYDVV--YGNV--------------SLKGALEKMA 112 (130)
T ss_pred EEEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCeeEE--Eecc--------------cHHHHHHHHH
Confidence 34579999998877788 5788888875554322 345554333 3664 6889988877
No 20
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=53.76 E-value=10 Score=30.76 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=16.9
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020195 299 TLALKGGYYDFVNGSFELW 317 (329)
Q Consensus 299 ~L~V~G~vYDi~TG~v~~v 317 (329)
++.|+||+++..+|.|+.+
T Consensus 29 ~lgl~G~V~N~~DGsVeiv 47 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIV 47 (92)
T ss_pred HCCCEEEEEECCCCeEEEE
Confidence 4669999999999999876
No 21
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=37.64 E-value=56 Score=25.56 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=19.3
Q ss_pred hhhhhHHHHHHHHHHHHh--hhcCCchh
Q 020195 66 MANQSYEEAIEALKKLLK--EKEDLKPV 91 (329)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (329)
|...+||+|+.+|.++++ +.+++..-
T Consensus 1 m~~~~fEeal~~LE~IV~~LE~g~l~Le 28 (75)
T PRK14066 1 MAVEKFETALKKLEEVVKKLEGGELSLD 28 (75)
T ss_pred CccccHHHHHHHHHHHHHHHHCCCCCHH
Confidence 667789999999988876 45555543
No 22
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=33.15 E-value=26 Score=30.68 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=12.7
Q ss_pred cceEEEeccCCCCc
Q 020195 212 VSNIVVIGHSACGG 225 (329)
Q Consensus 212 V~~IVV~GHT~CGa 225 (329)
+.+|.|+||.+||=
T Consensus 3 ~~~I~i~G~~~sGK 16 (188)
T PF00009_consen 3 IRNIAIIGHVDSGK 16 (188)
T ss_dssp EEEEEEEESTTSSH
T ss_pred EEEEEEECCCCCCc
Confidence 67899999999994
No 23
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=31.49 E-value=17 Score=28.38 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=12.8
Q ss_pred EEEEEEEccCCeEEE
Q 020195 302 LKGGYYDFVNGSFEL 316 (329)
Q Consensus 302 V~G~vYDi~TG~v~~ 316 (329)
.|||.||+.||++..
T Consensus 66 ~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 66 CHGWRFDLDTGECVG 80 (97)
T ss_dssp TTTEEEETTTSBEEE
T ss_pred CcCCEEeCCCceEec
Confidence 699999999998643
No 24
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=30.90 E-value=3e+02 Score=29.11 Aligned_cols=79 Identities=24% Similarity=0.294 Sum_probs=53.2
Q ss_pred CccccCCCcccCcchhhHhhhhhHHHHHHHHHHHHhhhcCCchhHhHhhHHHHHhhcCCCCCCh-----HHHHH------
Q 020195 48 EPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKA-----FDSVE------ 116 (329)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~~~~~~p-----~~~l~------ 116 (329)
..=|++|+===+|. -++..++|--+-.-+..++.+-+++......+++..|.++-..-+++. -++++
T Consensus 45 d~RF~~~~W~~~~~--~~~~~q~yl~~~~~~~~~~~~~~g~~~~~~~~~~f~~~q~~~a~sPsNf~~tNP~~~~~~~~t~ 122 (532)
T TIGR01838 45 DRRFASPAWSSHPF--FDFLKQSYLLNSSWLLELVDAVEGLDPKTRRRLEFFTRQLINAMAPSNFLATNPEALRLTVETQ 122 (532)
T ss_pred CCCCCCchhccChH--HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhCCcccccCCHHHHHHHHHcC
Confidence 34466554222222 467788898888888889888888999999999999888865432222 13333
Q ss_pred --HHHHHHHHHHhh
Q 020195 117 --RIKEGFIHFKRE 128 (329)
Q Consensus 117 --~Ll~GN~rF~~~ 128 (329)
.|.+|-+.|.+.
T Consensus 123 g~~l~~G~~~~~~D 136 (532)
T TIGR01838 123 GESLVRGMENLAED 136 (532)
T ss_pred ChhHHHHHHHHHHH
Confidence 567788888663
No 25
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=30.16 E-value=33 Score=30.10 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=12.7
Q ss_pred cceEEEeccCCCCc
Q 020195 212 VSNIVVIGHSACGG 225 (329)
Q Consensus 212 V~~IVV~GHT~CGa 225 (329)
+++|+++||++||=
T Consensus 2 ~r~i~ivG~~~~GK 15 (194)
T cd01891 2 IRNIAIIAHVDHGK 15 (194)
T ss_pred ccEEEEEecCCCCH
Confidence 78999999999993
No 26
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.72 E-value=1.2e+02 Score=27.27 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHhhhcCCchhHhHhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHH
Q 020195 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFK 126 (329)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~~~~~~p~~~l~~Ll~GN~rF~ 126 (329)
.+||..+++.-|++|=|..+|. +|-..++.+++-+++.. |.....+-++++.+....
T Consensus 105 aDsf~K~vaaskr~lPets~La-vA~~vl~~l~~fv~e~~-P~h~~af~eiLepFg~~l 161 (165)
T PF08822_consen 105 ADSFSKMVAASKRVLPETSELA-VAMEVLELLAAFVQERY-PQHLAAFLEILEPFGEEL 161 (165)
T ss_pred HHHHHHHHHHHhhcCchHHHHH-HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHH
Confidence 4667777777777777766664 45556666665555553 444556666666655443
No 27
>PRK09778 putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional
Probab=26.84 E-value=86 Score=25.89 Aligned_cols=74 Identities=22% Similarity=0.207 Sum_probs=38.1
Q ss_pred cccccccccccccCC--CCceEEEeccCCCCCCCcccCCccccCCCcccCcchhhHhhhhhHHHHHHHHHHHHhhhcCCc
Q 020195 12 TSVSQAQSSLIKSST--LRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLK 89 (329)
Q Consensus 12 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (329)
+..+.+-|-+||.+. ++.-- .--|=+|+|.|- .+.|.+-|.|... .|+. .|.++.+++..
T Consensus 6 A~~taSISELKKNP~~~~~g~P---------VAILNhN~PafY----~Vpa~~yE~m~e~-LeD~--eL~~l~~~R~~-- 67 (97)
T PRK09778 6 AEKSVNITELRKNPAKYFIDQP---------VAVLSNNRPAGY----LLSASAFEALMDM-LAEQ--EEKKPIKARFR-- 67 (97)
T ss_pred hhhhccHHHHhhCHHHHhcCCc---------eEEecCCceeEE----EeCHHHHHHHHHH-HHhH--HHHHHHHHHcC--
Confidence 334455577888543 32222 233558999886 3445444555533 1111 24455555544
Q ss_pred hhHhHhhHHHHHhhc
Q 020195 90 PVAAAKVEQITAQLQ 104 (329)
Q Consensus 90 ~~~~~~~~~~t~~l~ 104 (329)
-.++.++.++++-+
T Consensus 68 -~~~~~~~~i~~~~~ 81 (97)
T PRK09778 68 -PSAARLEEITRRAE 81 (97)
T ss_pred -ccHHHHHHHHHHHH
Confidence 34566666665543
No 28
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=25.15 E-value=28 Score=27.25 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=12.5
Q ss_pred EEEEEEEccCCeEE
Q 020195 302 LKGGYYDFVNGSFE 315 (329)
Q Consensus 302 V~G~vYDi~TG~v~ 315 (329)
.|||.||+.||+..
T Consensus 62 ~Hg~~fd~~~G~~~ 75 (98)
T cd03528 62 LHGGRFDLRTGKAL 75 (98)
T ss_pred CcCCEEECCCCccc
Confidence 79999999999864
No 29
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=24.92 E-value=41 Score=28.45 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=11.4
Q ss_pred ceEEEeccCCCCc
Q 020195 213 SNIVVIGHSACGG 225 (329)
Q Consensus 213 ~~IVV~GHT~CGa 225 (329)
++|+++||++||=
T Consensus 1 rni~~vG~~~~GK 13 (179)
T cd01890 1 RNFSIIAHIDHGK 13 (179)
T ss_pred CcEEEEeecCCCH
Confidence 4799999999993
No 30
>PRK14432 acylphosphatase; Provisional
Probab=24.05 E-value=56 Score=26.34 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=16.9
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 020195 299 TLALKGGYYDFVNGSFELWG 318 (329)
Q Consensus 299 ~L~V~G~vYDi~TG~v~~v~ 318 (329)
++.|+||+.+..+|.|+.+-
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~ 46 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVA 46 (93)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 45699999999999998754
No 31
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=24.04 E-value=26 Score=27.48 Aligned_cols=14 Identities=21% Similarity=0.620 Sum_probs=12.4
Q ss_pred EEEEEEEccCCeEE
Q 020195 302 LKGGYYDFVNGSFE 315 (329)
Q Consensus 302 V~G~vYDi~TG~v~ 315 (329)
.|||.||+.||++.
T Consensus 61 ~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 61 WHGACFNLRTGDIE 74 (95)
T ss_pred CCCCEEECCCCcCc
Confidence 79999999999754
No 32
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=23.05 E-value=41 Score=24.44 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=11.0
Q ss_pred EEEEEEccCCeEE
Q 020195 303 KGGYYDFVNGSFE 315 (329)
Q Consensus 303 ~G~vYDi~TG~v~ 315 (329)
-|+-||++||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 4889999999874
No 33
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.90 E-value=1.4e+02 Score=23.44 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHh--hhcCCch
Q 020195 68 NQSYEEAIEALKKLLK--EKEDLKP 90 (329)
Q Consensus 68 ~~~~~~~~~~~~~~~~--~~~~~~~ 90 (329)
+.|||+|+++|..+++ +.+++..
T Consensus 5 ~~sfEeal~~Le~IV~~LE~gdl~L 29 (76)
T PRK14068 5 TQSFEEMMQELEQIVQKLDNETVSL 29 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCCH
Confidence 4589999999988776 4445543
No 34
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.64 E-value=1.4e+02 Score=23.29 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHh--hhcCCch
Q 020195 69 QSYEEAIEALKKLLK--EKEDLKP 90 (329)
Q Consensus 69 ~~~~~~~~~~~~~~~--~~~~~~~ 90 (329)
.|||+|+.+|..+++ ++++++.
T Consensus 6 ~sfEe~l~~LE~IV~~LE~~~l~L 29 (75)
T PRK14064 6 KTFEEAIAELETIVEALENGSASL 29 (75)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCH
Confidence 389999999887776 3445543
No 35
>PRK14440 acylphosphatase; Provisional
Probab=22.46 E-value=66 Score=25.72 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020195 299 TLALKGGYYDFVNGSFELW 317 (329)
Q Consensus 299 ~L~V~G~vYDi~TG~v~~v 317 (329)
.+.|.||+.+..+|.|+.+
T Consensus 28 ~~gl~G~V~N~~dG~Vei~ 46 (90)
T PRK14440 28 RLGIKGYAKNLPDGSVEVV 46 (90)
T ss_pred HcCCEEEEEECCCCCEEEE
Confidence 4569999999999998865
No 36
>PRK14423 acylphosphatase; Provisional
Probab=22.10 E-value=76 Score=25.38 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020195 299 TLALKGGYYDFVNGSFELW 317 (329)
Q Consensus 299 ~L~V~G~vYDi~TG~v~~v 317 (329)
++.|.||+.+..+|.|+.+
T Consensus 30 ~lgl~G~V~N~~dG~Vei~ 48 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAV 48 (92)
T ss_pred HcCCEEEEEECCCCeEEEE
Confidence 4669999999999998865
No 37
>PRK14430 acylphosphatase; Provisional
Probab=22.09 E-value=65 Score=25.91 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.0
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020195 299 TLALKGGYYDFVNGSFELW 317 (329)
Q Consensus 299 ~L~V~G~vYDi~TG~v~~v 317 (329)
++.|.||+.+..+|.|+.+
T Consensus 29 ~lgl~G~VrN~~dGsVei~ 47 (92)
T PRK14430 29 DLGLGGWVRNRADGTVEVM 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 4559999999999998854
No 38
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=21.94 E-value=56 Score=30.99 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=13.6
Q ss_pred cceEEEeccCCCCccc
Q 020195 212 VSNIVVIGHSACGGIK 227 (329)
Q Consensus 212 V~~IVV~GHT~CGav~ 227 (329)
.++|.|+||.+||=..
T Consensus 2 ~Rni~ivGh~~~GKTT 17 (267)
T cd04169 2 RRTFAIISHPDAGKTT 17 (267)
T ss_pred ccEEEEEcCCCCCHHH
Confidence 6899999999999543
No 39
>PF14618 DUF4452: Domain of unknown function (DUF4452)
Probab=21.93 E-value=69 Score=28.89 Aligned_cols=62 Identities=26% Similarity=0.308 Sum_probs=32.4
Q ss_pred ccceeecccccccccccccCCCCceEEEeccCC-CCCCCc------ccCCcc---ccCCCcccCcchhhHhh
Q 020195 6 INNWCLTSVSQAQSSLIKSSTLRPSIVARLNSP-ASPPSL------IRNEPV---FAAPAPIINPNWREDMA 67 (329)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~ 67 (329)
-|...++|.||.++...--.+..|.+.-.-.++ ..+|.. ---+|. ---+.|||+|.-++.|+
T Consensus 77 s~rsSlsS~SP~~SP~q~~~~~~~~~sl~~~s~~~~~p~~~~~~~~klhqpsa~R~RnaIpIVNP~Tgm~vs 148 (165)
T PF14618_consen 77 SNRSSLSSNSPSSSPTQHQIQPTPSFSLSSASPPFQPPRYTQQNNLKLHQPSAPRTRNAIPIVNPSTGMRVS 148 (165)
T ss_pred cCccccccCCCCCCccccccccCCCcccCCCCCCcCCCcccccccccccCCccccccCccceeCCCCCCccC
Confidence 445788888888777663233334333222211 112332 112221 12368999999777665
No 40
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=21.79 E-value=3.9e+02 Score=26.30 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCC
Q 020195 115 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVC 159 (329)
Q Consensus 115 l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~ 159 (329)
|-.|+..-++..+-...++++.|..+.+.-.=+-+.|+-+|||=.
T Consensus 158 LlkLV~KRRKLLkYLKrkD~erY~~lIkkLGLRkv~f~~~~~~~~ 202 (302)
T PTZ00119 158 MSILLARRQKLMKYLYKTDFELYKHTCNLLKIKCILFAIPDSRDR 202 (302)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCceEEeecccccCh
Confidence 333333333333333345667777666545556788999999844
No 41
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=21.50 E-value=86 Score=23.45 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.1
Q ss_pred HHHHHhcChhHHhhhcCCceEEEEE
Q 020195 281 SLSNLLTYPFVREGLVNKTLALKGG 305 (329)
Q Consensus 281 qV~~L~s~P~V~~~v~~~~L~V~G~ 305 (329)
-|..|..+|-+-+.+.+|++.+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 4678899999999999999999985
No 42
>PRK14445 acylphosphatase; Provisional
Probab=21.38 E-value=82 Score=25.09 Aligned_cols=19 Identities=26% Similarity=0.393 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020195 299 TLALKGGYYDFVNGSFELW 317 (329)
Q Consensus 299 ~L~V~G~vYDi~TG~v~~v 317 (329)
.+.|.||+.+..+|.|+.+
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIE 47 (91)
T ss_pred hCCCEEEEEECCCCeEEEE
Confidence 4669999999999998754
No 43
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=21.25 E-value=52 Score=27.39 Aligned_cols=14 Identities=14% Similarity=0.527 Sum_probs=11.4
Q ss_pred eEEEeccCCCCccc
Q 020195 214 NIVVIGHSACGGIK 227 (329)
Q Consensus 214 ~IVV~GHT~CGav~ 227 (329)
+|+|+||.+||=..
T Consensus 1 ~i~~vG~~~~GKst 14 (167)
T cd04160 1 SVLILGLDNAGKTT 14 (167)
T ss_pred CEEEEecCCCCHHH
Confidence 48999999999533
No 44
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.08 E-value=57 Score=31.24 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=12.7
Q ss_pred cceEEEeccCCCCcc
Q 020195 212 VSNIVVIGHSACGGI 226 (329)
Q Consensus 212 V~~IVV~GHT~CGav 226 (329)
-+-|.|+|||+||=-
T Consensus 29 GEfvsilGpSGcGKS 43 (248)
T COG1116 29 GEFVAILGPSGCGKS 43 (248)
T ss_pred CCEEEEECCCCCCHH
Confidence 578999999999953
No 45
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=20.86 E-value=53 Score=27.89 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=14.1
Q ss_pred EEEEEEEccCCeEEEE
Q 020195 302 LKGGYYDFVNGSFELW 317 (329)
Q Consensus 302 V~G~vYDi~TG~v~~v 317 (329)
.|||.||+.||++..+
T Consensus 78 ~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 78 YHGWTYRLDDGKLVTI 93 (136)
T ss_pred CCccEEeCCCccEEEc
Confidence 7999999999998654
No 46
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=20.83 E-value=2.7e+02 Score=27.04 Aligned_cols=67 Identities=21% Similarity=0.180 Sum_probs=34.7
Q ss_pred hcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcccchhhhHHHHHHHhhhhhhccCcceEEEecc
Q 020195 141 AKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKCRLILLQVSNIVVIGH 220 (329)
Q Consensus 141 a~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~asLEYAV~~L~~~~~~~~V~~IVV~GH 220 (329)
+.-+.||+||-|- |=|-+.+..+.--=-+|+=|+-++.... -+...|--|+..-+ +..+||+|
T Consensus 78 ag~~dPKimvTTS---R~PSsrL~~FaKelkLvfPNaqr~nRG~------~~~~~lv~a~ra~~-------~Td~iivH- 140 (290)
T KOG2781|consen 78 AGEEDPKIMVTTS---RDPSSRLKMFAKELKLVFPNAQRLNRGN------YVVGELVDAARANG-------VTDLIIVH- 140 (290)
T ss_pred ccCCCCcEEEEeC---CCchHHHHHHHHhheEeccChhhhcccc------eeHHHHHHHHHHCC-------CceEEEEe-
Confidence 5568899888774 4343444333221134554444433221 13345556777777 77776664
Q ss_pred CCCC
Q 020195 221 SACG 224 (329)
Q Consensus 221 T~CG 224 (329)
..=|
T Consensus 141 EhRG 144 (290)
T KOG2781|consen 141 EHRG 144 (290)
T ss_pred ccCC
Confidence 3334
No 47
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=20.36 E-value=2e+02 Score=24.49 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=54.4
Q ss_pred hhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEeccCCcCCCCCCCcccchhhhHHHHHHHhhhhhhccCcceEEEec
Q 020195 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKCRLILLQVSNIVVIG 219 (329)
Q Consensus 140 La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~asLEYAV~~L~~~~~~~~V~~IVV~G 219 (329)
+..|-.|++.++-+==-|-....... .....+.++|..+.+.. ++..+|.+|+..-+ --.|+|-|
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~-------~~~I~V~G 70 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGK-------PVVIFVDG 70 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCC-------CEEEEEeC
Confidence 45678999999988888877655444 55678999999999975 36778888865544 45666777
Q ss_pred cCCCCcccccc
Q 020195 220 HSACGGIKGLM 230 (329)
Q Consensus 220 HT~CGav~A~~ 230 (329)
-.|==++-+.+
T Consensus 71 EEDL~~lPail 81 (121)
T PF04019_consen 71 EEDLAVLPAIL 81 (121)
T ss_pred hHHHHHHHHHH
Confidence 66655555443
No 48
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=20.24 E-value=58 Score=29.20 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.2
Q ss_pred ceEEEeccCCCCc
Q 020195 213 SNIVVIGHSACGG 225 (329)
Q Consensus 213 ~~IVV~GHT~CGa 225 (329)
++|+|+||.++|=
T Consensus 1 rnv~iiG~~~~GK 13 (213)
T cd04167 1 RNVAIAGHLHHGK 13 (213)
T ss_pred CcEEEEcCCCCCH
Confidence 4699999999994
Done!