BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020196
(329 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VXZ0|NUD20_ARATH Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20
PE=2 SV=1
Length = 374
Score = 340 bits (871), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/325 (53%), Positives = 220/325 (67%), Gaps = 16/325 (4%)
Query: 1 MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDT 60
MA F L T+ S H A T + L P+ SS+ + +R R +
Sbjct: 1 MASGFCSLALTVTTSLFSSH------AITRRVL----PI-LRWRSSSMSLSPLRHSRALS 49
Query: 61 ASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQ 120
A+ + S +FTWDDV + EY +SSDL G+FEKI CNRGSE EF PF+IE+Q
Sbjct: 50 AATTVPISSSFTWDDVIETGRAEY---NSSDLTGFFEKINRCNRGSEKLGEFIPFVIEEQ 106
Query: 121 VAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKTADERTRVVGEVIKCLA 178
+ GY H RF +LR++ D+F +S N R +V LN L+ ++RTR V +VIK L
Sbjct: 107 IVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQKPEDRTRAVADVIKILG 166
Query: 179 EEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGK 238
++ +IP I+NELYPV +F +P+FFSL+RAAAPYFGIK Y V +NGYVE+DGQK LWIGK
Sbjct: 167 DKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKLLWIGK 226
Query: 239 RSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDIN 298
RS KSTYPGMLD L GGLPHGI+CG N++KECEEEAGI R+I++RA VGAVSY DI+
Sbjct: 227 RSLSKSTYPGMLDHLVAGGLPHGISCGGNLVKECEEEAGISRAIADRAIAVGAVSYLDID 286
Query: 299 GFSYKRDVIFCYDLKLPEDFVPMNQ 323
+ +KRDV+FCYDL+LPEDFVP NQ
Sbjct: 287 QYCFKRDVLFCYDLELPEDFVPKNQ 311
>sp|P0C026|NUD24_ARATH Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24
PE=2 SV=1
Length = 365
Score = 322 bits (825), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 195/270 (72%), Gaps = 9/270 (3%)
Query: 54 RSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFF 113
R L V+T +S +FTW+DVF S+ EY P +SSDL G+ EK+ CNRG E EF
Sbjct: 42 RVLSVETVPLS----PSFTWNDVFENSRKEYVPQNSSDLTGFLEKVDRCNRGLEKLGEFI 97
Query: 114 PFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEV 173
PF+IE+Q+ GY H F +LR ++D+F +S ++G HV LN L +ERTR V V
Sbjct: 98 PFVIEEQIVGYIHKGFTKYLRDFNDIFTFS-----QYGGHVTLNMMLDKPEERTRAVAHV 152
Query: 174 IKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKF 233
IK L + +IP I+NELYPV +F +P FFS++RAAAPYFG+K YA+ +NGYVE+DGQKF
Sbjct: 153 IKILGNKGIIPGIRNELYPVKPSFNAPAFFSIERAAAPYFGLKGYAIHVNGYVERDGQKF 212
Query: 234 LWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVS 293
LWIGKRS KSTYPG LD L GGLPHGI+ EN++KECEEEAGI + +++RA VG VS
Sbjct: 213 LWIGKRSLAKSTYPGKLDHLVAGGLPHGISVCENLVKECEEEAGISKVLADRAIAVGVVS 272
Query: 294 YTDINGFSYKRDVIFCYDLKLPEDFVPMNQ 323
Y DI+ + + RDV+FCYDL+LP+DFVP NQ
Sbjct: 273 YMDIDRYCFTRDVLFCYDLELPQDFVPTNQ 302
>sp|P47173|YJ9J_YEAST Uncharacterized protein YJR142W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YJR142W PE=1 SV=1
Length = 342
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 23/188 (12%)
Query: 152 SHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQ---NELYPVASTFGSPIFFSLDRA 208
S +L K + D R ++ ++ + + E + ++ NE Y V + ++RA
Sbjct: 89 SRHELRFKSEDFDHRNNLIDQLARKMYLESSLSGVKGWRNEKYAVW--VNKKPYVLVERA 146
Query: 209 AAPYFGIKAYAVPLNGYV--EKDGQKFLWIGKRSQVKSTYPGMLD-ILAGG-GLPHGIAC 264
A GI Y + +NGYV K + W+ +RS+ K T+P MLD I+AGG G P+GI
Sbjct: 147 VAGVLGIITYGIHINGYVLDPKSKKVQFWVPRRSKTKQTWPLMLDNIIAGGLGYPYGIY- 205
Query: 265 GENIIKECEEEAGIPRS-ISNRARPVGAVSYTDING------FSYKRDVI-----FCYDL 312
E ++KE EEA + +S I + + G+VSY G F+ + D I + YDL
Sbjct: 206 -ETVLKESMEEANLEKSVIEDNIKATGSVSYLYFTGDISVTKFNKESDFIVGEVQYVYDL 264
Query: 313 KLPEDFVP 320
KL ED +P
Sbjct: 265 KLSEDIIP 272
>sp|P41888|TNR3_SCHPO Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=tnr3 PE=4 SV=1
Length = 569
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 11/181 (6%)
Query: 151 GSHVKLNSKLKTADERTRVVGEVIKCLAEEE---LIPDIQNELYPVASTFGSPIFFSLDR 207
G ++++N+ T ++RT ++ +V++ + +NELY V P+ +++R
Sbjct: 68 GEYIEINAS--TFEKRTDILAKVLEHWRHNNTFGIADQWRNELYTVYGKSKKPVL-AVER 124
Query: 208 AAAPYFGIKAYAVPLNGYV--EKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACG 265
FG + V Y+ K+ +W+ +RS K T+P LD GG+ HG +
Sbjct: 125 GGFWLFGFLSTGVHCTMYIPATKEHPLRIWVPRRSPTKQTWPNYLDNSVAGGIAHGDSVI 184
Query: 266 ENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSY-KRDVIFCYDLKLPEDFVP-MNQ 323
+IKE EEA + S N P G VSY + + + ++ + +DL + + +P +N
Sbjct: 185 GTMIKEFSEEANLDVSSMNLI-PCGTVSYIKMEKRHWIQPELQYVFDLPVDDLVIPRIND 243
Query: 324 G 324
G
Sbjct: 244 G 244
>sp|Q9RY71|Y079_DEIRA Nudix hydrolase DR_0079 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_0079 PE=1 SV=1
Length = 171
Score = 38.1 bits (87), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 228 KDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRAR 287
++ Q LWI +RS KS +P LD+ GG + G E +E EE +
Sbjct: 42 RNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNV--------- 92
Query: 288 PVGAVSYTDINGFS 301
+ A+S+ + FS
Sbjct: 93 EIDALSWRPLASFS 106
>sp|Q9HUW9|Y4841_PSEAE Uncharacterized Nudix hydrolase PA4841 OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=PA4841 PE=3 SV=2
Length = 169
Score = 35.0 bits (79), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 234 LWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGI 278
L + +R+ K+ YPG D+ AGG + G ++ +E EEE GI
Sbjct: 51 LCVQRRTLSKAVYPGYWDLAAGGMVQAGEPYADSAARELEEELGI 95
>sp|Q1PDC4|L_MABVR RNA-directed RNA polymerase L OS=Lake Victoria marburgvirus (strain
Ravn-87) GN=L PE=3 SV=1
Length = 2327
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 156 LNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFS 204
LN KL+ D RT IK + + +L P EL+ + +G P+ ++
Sbjct: 337 LNLKLQIPDNRTECAQNFIKTIIQAKLTPQQYCELFSLQKHWGHPVLYN 385
>sp|Q754I9|RRF2M_ASHGO Ribosome-releasing factor 2, mitochondrial OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MEF2 PE=3 SV=1
Length = 835
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 242 VKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGI 278
+KS +PG + +LAG + + G+ I+ C + GI
Sbjct: 431 IKSLHPGDIGVLAGANVADHVRTGDTIVAHCTSKDGI 467
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,838,018
Number of Sequences: 539616
Number of extensions: 5404695
Number of successful extensions: 11801
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11778
Number of HSP's gapped (non-prelim): 20
length of query: 329
length of database: 191,569,459
effective HSP length: 118
effective length of query: 211
effective length of database: 127,894,771
effective search space: 26985796681
effective search space used: 26985796681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)