Query 020196
Match_columns 329
No_of_seqs 248 out of 1149
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02839 nudix hydrolase 100.0 6.9E-81 1.5E-85 606.9 27.1 293 36-329 21-315 (372)
2 KOG4313 Thiamine pyrophosphoki 100.0 8.7E-49 1.9E-53 362.5 17.4 227 93-329 11-246 (306)
3 cd03676 Nudix_hydrolase_3 Memb 100.0 3.6E-35 7.8E-40 260.1 16.3 144 185-329 1-146 (180)
4 PLN02791 Nudix hydrolase homol 99.8 1.2E-20 2.6E-25 199.9 14.6 140 187-329 2-146 (770)
5 PLN02552 isopentenyl-diphospha 99.8 2.1E-20 4.6E-25 175.7 14.7 139 187-329 21-191 (247)
6 cd02885 IPP_Isomerase Isopente 99.8 2.7E-20 5.9E-25 163.0 13.1 133 188-328 1-135 (165)
7 TIGR02150 IPP_isom_1 isopenten 99.8 7E-20 1.5E-24 160.0 13.8 129 191-329 1-130 (158)
8 PRK03759 isopentenyl-diphospha 99.8 3E-19 6.5E-24 159.5 13.3 134 187-328 4-139 (184)
9 cd04692 Nudix_Hydrolase_33 Mem 99.8 3.6E-19 7.7E-24 152.0 11.6 112 216-328 1-114 (144)
10 PRK15393 NUDIX hydrolase YfcD; 99.7 1.7E-17 3.8E-22 148.1 13.2 129 187-328 8-136 (180)
11 COG1443 Idi Isopentenyldiphosp 99.7 7.9E-17 1.7E-21 143.7 8.7 137 187-329 2-141 (185)
12 cd04697 Nudix_Hydrolase_38 Mem 99.6 2.1E-14 4.4E-19 120.0 11.4 98 219-328 2-99 (126)
13 cd04693 Nudix_Hydrolase_34 Mem 99.5 9.1E-14 2E-18 115.5 10.4 91 230-328 10-100 (127)
14 cd03426 CoAse Coenzyme A pyrop 99.5 3.5E-13 7.6E-18 117.4 9.9 103 217-328 2-105 (157)
15 cd04682 Nudix_Hydrolase_23 Mem 99.4 9.1E-13 2E-17 109.0 10.8 89 232-328 12-101 (122)
16 cd04664 Nudix_Hydrolase_7 Memb 99.4 1.7E-12 3.6E-17 108.0 10.8 102 219-328 3-105 (129)
17 PRK15472 nucleoside triphospha 99.4 8.1E-12 1.8E-16 105.9 11.6 61 218-282 4-64 (141)
18 cd04684 Nudix_Hydrolase_25 Con 99.3 2.3E-11 5.1E-16 99.6 12.6 90 232-327 11-103 (128)
19 PF00293 NUDIX: NUDIX domain; 99.3 6.8E-12 1.5E-16 102.7 7.8 104 217-328 2-106 (134)
20 cd04694 Nudix_Hydrolase_35 Mem 99.3 7.1E-11 1.5E-15 102.3 11.9 99 230-329 11-119 (143)
21 cd04679 Nudix_Hydrolase_20 Mem 99.2 1.3E-10 2.7E-15 96.2 12.1 90 230-328 12-102 (125)
22 cd04681 Nudix_Hydrolase_22 Mem 99.2 8.9E-11 1.9E-15 97.4 11.1 82 230-317 11-92 (130)
23 cd04683 Nudix_Hydrolase_24 Mem 99.2 1.7E-10 3.7E-15 94.5 12.1 90 232-328 11-101 (120)
24 cd04691 Nudix_Hydrolase_32 Mem 99.2 1.2E-10 2.7E-15 96.1 11.0 77 232-317 11-87 (117)
25 KOG0142 Isopentenyl pyrophosph 99.2 1.1E-11 2.5E-16 112.9 4.7 136 189-329 20-171 (225)
26 cd03673 Ap6A_hydrolase Diadeno 99.2 1.9E-10 4.2E-15 94.5 11.6 89 229-327 13-102 (131)
27 cd04688 Nudix_Hydrolase_29 Mem 99.2 3.1E-10 6.7E-15 94.0 12.0 77 233-318 13-89 (126)
28 cd03430 GDPMH GDP-mannose glyc 99.2 3.7E-10 7.9E-15 97.2 12.5 94 230-328 22-119 (144)
29 cd04673 Nudix_Hydrolase_15 Mem 99.2 5.2E-10 1.1E-14 91.1 12.2 80 232-317 11-92 (122)
30 cd03424 ADPRase_NUDT5 ADP-ribo 99.2 2.4E-10 5.1E-15 95.8 10.2 99 218-328 3-102 (137)
31 PRK09438 nudB dihydroneopterin 99.2 1.7E-10 3.6E-15 98.6 9.4 82 231-318 18-108 (148)
32 cd03427 MTH1 MutT homolog-1 (M 99.2 3.6E-10 7.8E-15 94.6 11.0 78 232-317 12-89 (137)
33 PRK15434 GDP-mannose mannosyl 99.1 4.3E-10 9.4E-15 99.4 11.8 95 229-328 26-124 (159)
34 cd04678 Nudix_Hydrolase_19 Mem 99.1 1.1E-09 2.4E-14 90.8 13.2 81 229-317 11-91 (129)
35 cd04699 Nudix_Hydrolase_39 Mem 99.1 5.6E-10 1.2E-14 91.6 11.0 53 230-283 11-63 (129)
36 cd04680 Nudix_Hydrolase_21 Mem 99.1 4.4E-10 9.5E-15 91.5 9.9 93 219-327 2-94 (120)
37 cd04677 Nudix_Hydrolase_18 Mem 99.1 4.3E-10 9.4E-15 93.1 9.8 57 218-283 8-64 (132)
38 cd03671 Ap4A_hydrolase_plant_l 99.1 5.6E-10 1.2E-14 95.7 10.7 49 230-283 13-61 (147)
39 cd02883 Nudix_Hydrolase Nudix 99.1 1E-09 2.3E-14 87.2 11.4 89 230-327 10-98 (123)
40 cd04696 Nudix_Hydrolase_37 Mem 99.1 1.5E-09 3.2E-14 90.0 11.6 83 225-316 8-91 (125)
41 cd04695 Nudix_Hydrolase_36 Mem 99.1 1.6E-09 3.4E-14 91.0 11.9 91 229-328 11-101 (131)
42 cd03425 MutT_pyrophosphohydrol 99.1 1.9E-09 4E-14 86.9 11.8 83 225-316 6-88 (124)
43 cd03675 Nudix_Hydrolase_2 Cont 99.1 2.6E-09 5.7E-14 89.2 12.7 88 232-328 11-98 (134)
44 cd03428 Ap4A_hydrolase_human_l 99.1 1.6E-09 3.4E-14 89.7 11.1 92 225-327 10-101 (130)
45 cd04689 Nudix_Hydrolase_30 Mem 99.1 2.1E-09 4.6E-14 88.8 11.8 77 232-317 12-88 (125)
46 cd04700 DR1025_like DR1025 fro 99.1 1.8E-09 3.9E-14 92.5 11.2 87 232-328 25-112 (142)
47 PRK10776 nucleoside triphospha 99.0 4.7E-09 1E-13 85.9 12.4 65 228-297 12-76 (129)
48 PLN02709 nudix hydrolase 99.0 1.9E-09 4.1E-14 100.4 10.9 92 230-329 49-143 (222)
49 cd04670 Nudix_Hydrolase_12 Mem 99.0 6.5E-09 1.4E-13 86.2 11.6 50 229-282 11-60 (127)
50 cd04687 Nudix_Hydrolase_28 Mem 99.0 9E-09 2E-13 85.6 12.4 79 232-317 12-94 (128)
51 PRK10707 putative NUDIX hydrol 99.0 6.9E-09 1.5E-13 94.1 12.6 91 230-328 42-133 (190)
52 PLN02325 nudix hydrolase 99.0 1.1E-08 2.4E-13 88.2 13.0 79 232-316 20-98 (144)
53 cd04685 Nudix_Hydrolase_26 Mem 99.0 1E-08 2.2E-13 87.5 12.2 91 219-316 2-93 (133)
54 cd04676 Nudix_Hydrolase_17 Mem 98.9 6.7E-09 1.5E-13 84.6 10.2 48 229-282 11-58 (129)
55 cd03429 NADH_pyrophosphatase N 98.9 6.2E-09 1.4E-13 87.9 10.2 85 230-328 10-94 (131)
56 cd03674 Nudix_Hydrolase_1 Memb 98.9 7.2E-09 1.6E-13 88.0 10.4 45 232-282 15-59 (138)
57 TIGR00586 mutt mutator mutT pr 98.9 2.9E-08 6.2E-13 81.6 12.9 79 229-316 13-91 (128)
58 cd04666 Nudix_Hydrolase_9 Memb 98.9 2.1E-08 4.5E-13 84.2 12.2 80 229-317 12-92 (122)
59 cd04690 Nudix_Hydrolase_31 Mem 98.9 1.4E-08 3.1E-13 82.6 10.7 77 232-316 12-88 (118)
60 cd04672 Nudix_Hydrolase_14 Mem 98.9 2.3E-08 5E-13 82.7 11.2 85 232-327 13-98 (123)
61 PRK10546 pyrimidine (deoxy)nuc 98.9 4.5E-08 9.7E-13 81.7 12.8 59 232-295 15-73 (135)
62 cd04662 Nudix_Hydrolase_5 Memb 98.9 3.6E-08 7.8E-13 84.6 12.3 56 225-281 8-65 (126)
63 PRK00714 RNA pyrophosphohydrol 98.9 1.6E-08 3.5E-13 88.3 10.3 47 231-282 19-65 (156)
64 PRK00241 nudC NADH pyrophospha 98.8 1.5E-08 3.2E-13 96.0 10.0 83 232-328 143-225 (256)
65 cd04671 Nudix_Hydrolase_13 Mem 98.8 3.5E-08 7.7E-13 82.7 10.7 76 229-317 9-84 (123)
66 cd04669 Nudix_Hydrolase_11 Mem 98.7 4E-08 8.6E-13 81.6 8.5 48 231-282 11-58 (121)
67 COG1051 ADP-ribose pyrophospha 98.7 1.1E-07 2.4E-12 82.6 10.9 57 222-283 13-69 (145)
68 cd04686 Nudix_Hydrolase_27 Mem 98.7 2E-07 4.2E-12 78.6 11.7 77 232-317 11-91 (131)
69 cd04661 MRP_L46 Mitochondrial 98.7 8.5E-08 1.8E-12 81.2 9.2 82 232-317 13-98 (132)
70 cd04511 Nudix_Hydrolase_4 Memb 98.7 2.8E-07 6.1E-12 77.2 11.5 74 232-317 24-97 (130)
71 cd04667 Nudix_Hydrolase_10 Mem 98.7 1.9E-07 4.1E-12 76.0 10.1 68 232-317 11-78 (112)
72 cd03672 Dcp2p mRNA decapping e 98.7 1.8E-07 3.9E-12 81.0 9.9 45 232-282 14-58 (145)
73 COG0494 MutT NTP pyrophosphohy 98.6 3.6E-07 7.9E-12 73.3 9.2 46 232-282 24-70 (161)
74 PRK08999 hypothetical protein; 98.6 7.6E-07 1.6E-11 85.1 13.0 86 221-315 6-91 (312)
75 PRK05379 bifunctional nicotina 98.6 6.8E-07 1.5E-11 87.7 12.8 48 232-282 214-261 (340)
76 cd04665 Nudix_Hydrolase_8 Memb 98.5 1.4E-06 3E-11 73.4 10.5 71 233-317 12-82 (118)
77 KOG3069 Peroxisomal NUDIX hydr 98.4 5.7E-07 1.2E-11 84.2 8.0 105 219-329 45-151 (246)
78 PRK11762 nudE adenosine nucleo 98.4 3.1E-06 6.7E-11 75.8 10.9 73 232-313 59-131 (185)
79 TIGR02705 nudix_YtkD nucleosid 98.4 8.4E-06 1.8E-10 72.3 13.1 100 195-315 5-104 (156)
80 cd04663 Nudix_Hydrolase_6 Memb 98.3 1E-05 2.2E-10 69.4 11.0 51 223-280 4-55 (126)
81 COG2816 NPY1 NTP pyrophosphohy 98.3 1.3E-06 2.9E-11 83.8 5.8 46 233-282 156-201 (279)
82 TIGR00052 nudix-type nucleosid 98.3 4.9E-06 1.1E-10 75.2 9.2 64 246-317 75-138 (185)
83 cd04674 Nudix_Hydrolase_16 Mem 98.2 1.5E-05 3.2E-10 67.4 11.1 47 232-282 16-62 (118)
84 KOG3084 NADH pyrophosphatase I 98.0 8.8E-06 1.9E-10 79.2 6.6 48 231-282 199-246 (345)
85 cd03670 ADPRase_NUDT9 ADP-ribo 97.8 7.2E-05 1.6E-09 68.2 8.4 45 230-280 47-91 (186)
86 KOG3041 Nucleoside diphosphate 97.8 0.00014 3.1E-09 66.9 9.7 102 219-326 75-179 (225)
87 PRK10729 nudF ADP-ribose pyrop 97.8 0.00029 6.2E-09 64.7 11.0 58 249-314 83-140 (202)
88 KOG2839 Diadenosine and diphos 97.4 0.0002 4.4E-09 62.8 4.5 32 253-284 40-71 (145)
89 PRK15009 GDP-mannose pyrophosp 97.4 0.0018 3.9E-08 59.0 10.5 55 252-314 82-136 (191)
90 PLN03143 nudix hydrolase; Prov 97.3 0.0016 3.5E-08 63.3 10.1 51 229-281 140-191 (291)
91 cd03431 DNA_Glycosylase_C DNA 97.2 0.0063 1.4E-07 48.7 11.0 73 231-315 13-85 (118)
92 KOG0648 Predicted NUDIX hydrol 96.1 0.017 3.8E-07 56.2 7.3 59 223-283 119-177 (295)
93 PF14815 NUDIX_4: NUDIX domain 90.9 0.96 2.1E-05 36.8 6.8 79 229-317 6-84 (114)
94 COG4112 Predicted phosphoester 88.3 1.1 2.4E-05 40.7 5.6 63 232-294 72-143 (203)
95 KOG4195 Transient receptor pot 87.2 1.4 3.1E-05 41.8 5.9 38 233-276 140-177 (275)
96 COG4119 Predicted NTP pyrophos 87.2 2 4.3E-05 37.7 6.3 33 248-281 36-68 (161)
97 PF14443 DBC1: DBC1 72.3 16 0.00035 31.7 6.9 79 232-310 8-90 (126)
98 PF13869 NUDIX_2: Nucleotide h 64.1 99 0.0021 28.7 10.6 80 230-317 56-148 (188)
99 KOG1202 Animal-type fatty acid 62.8 7.9 0.00017 44.9 3.9 66 217-282 223-295 (2376)
100 KOG4432 Uncharacterized NUDIX 53.9 21 0.00046 35.5 4.7 30 252-281 287-316 (405)
101 PF08057 Ery_res_leader2: Eryt 45.3 10 0.00022 20.7 0.6 12 8-19 1-12 (14)
102 KOG4432 Uncharacterized NUDIX 39.7 48 0.001 33.1 4.7 35 248-282 78-112 (405)
103 PF11212 DUF2999: Protein of u 23.2 54 0.0012 26.1 1.6 17 267-283 58-74 (82)
No 1
>PLN02839 nudix hydrolase
Probab=100.00 E-value=6.9e-81 Score=606.94 Aligned_cols=293 Identities=55% Similarity=1.015 Sum_probs=265.6
Q ss_pred ecceeeeeeccccccceeeeeeeccccccccccccccccceeeccCCCCCCCCccchHHHHHHHHHhcCCCCCCCCeEeE
Q 020196 36 TFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPF 115 (329)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~cN~~~~~~~~~~pf 115 (329)
++|+ |...|++.+..-....+...+..+++++++||||||||++++||++++++++++|+++|++||++.++++.|.||
T Consensus 21 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cn~~~~~~~~~~Pf 99 (372)
T PLN02839 21 LIPT-LRWRSSSMSRSPLRHSRAVSAATTVPISSSFTWDDVIETGRAEYVPQNSSDLTGFLEKVDRCNRGSEKLGEFIPF 99 (372)
T ss_pred ccee-eEeecccccCCCCccccceeeEEeecccccccHHHHHhhcccccCccccchhhhhHHHHHHhhccccccccccCe
Confidence 4777 777774433333333333444556788899999999999999999999999999999999999997778899999
Q ss_pred EECCEEEEeecHHHHHHHhcCCCeEEeeCCCC--CcccceEEeccCCCCHHHHHHHHHHHHHHHHHcCCCCCccCCeEEe
Q 020196 116 IIEDQVAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPV 193 (329)
Q Consensus 116 ~i~g~~vG~I~p~~~~~L~~~~~~F~~~~~~~--~~~~~~V~L~p~~~t~e~Rt~al~~v~~~Lr~~g~l~gWR~El~~V 193 (329)
+++|++||||+|.++++|.+|+++|.+..++. +.....|+|++.+.++++||+++++++++|+++|+++|||||+|+|
T Consensus 100 ~v~gq~VG~I~~~~~~~L~~~~~vF~~~~~~~~~~~~~~~V~L~~~~~t~~~Rt~al~~v~~~lr~~g~~~gWRnE~y~V 179 (372)
T PLN02839 100 VIEEQIVGYIHKGFTEYLREFHDIFTFSQNGSCPDRVDGHVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNELYPV 179 (372)
T ss_pred EECCEEEEEECHHHHHHHhhCccceeeccccccccccCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCcccCcccc
Confidence 99999999999999999999999999964321 1223589999999999999999999999999999999999999999
Q ss_pred ecCCCCceeEEEecccCccCCceeeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHH
Q 020196 194 ASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECE 273 (329)
Q Consensus 194 ~~~~g~~~l~~iERaa~~lfGi~~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~ 273 (329)
++.+|+++++.|||+|+++||+.+||||||||++.+++++|||+|||++|++|||||||+||||+++||++.||++|||+
T Consensus 180 ~~~~~~~~l~~iERaA~~lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~ 259 (372)
T PLN02839 180 KPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECE 259 (372)
T ss_pred ccCCCCcceEEEeeccccccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHH
Confidence 98888899999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred hhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEEEEeCCCccccCCCCCcCC
Q 020196 274 EEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQGNCIKA 329 (329)
Q Consensus 274 EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYdLeLp~df~P~p~DgEVea 329 (329)
|||||+.+++++++++|+|+|.+..+.++++|++|||||+||+||+|+|+||||++
T Consensus 260 EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YDLeLP~df~P~~qDGEVe~ 315 (372)
T PLN02839 260 EEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYDLELPQDFVPKNQDGEVES 315 (372)
T ss_pred HHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEeeeecCCccccCCCccceeE
Confidence 99999999888899999999999998899999999999999999999999999984
No 2
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.7e-49 Score=362.52 Aligned_cols=227 Identities=29% Similarity=0.508 Sum_probs=196.6
Q ss_pred HHHHHHHHHhcCCCCCCCCeEeEEECCEEEEeecHHHHHHHhcCCCeEE---eeCCCCCcccceEEeccCCCCHHHHHHH
Q 020196 93 RGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFI---YSGNNGGRFGSHVKLNSKLKTADERTRV 169 (329)
Q Consensus 93 ~~~l~~i~~cN~~~~~~~~~~pf~i~g~~vG~I~p~~~~~L~~~~~~F~---~~~~~~~~~~~~V~L~p~~~t~e~Rt~a 169 (329)
-+++++.+.|.+|......-+||+.+|..||||.|.+.++|...+..+. ...+ ..+.+ + ..+++.|+..
T Consensus 11 ~~~~elmd~~~~f~~f~~g~i~~~~~~~~iG~v~~~vl~~lek~~~~~f~~~~~~~------e~~~~-~-a~~f~~r~~~ 82 (306)
T KOG4313|consen 11 LNAEELLDECDSFNGFVPGTIPFRANGAAIGYVTPLVLEILIKADNFKFNWVYVPG------EYIEI-N-ASTFEKRTDI 82 (306)
T ss_pred cCHHHHHHHHHHhcCccccceeceeccceeeeecHHHHHHHHhccchheeeeeccc------cceec-c-cccchhhhhH
Confidence 4567777888888644445567777789999999999999999887442 2221 23333 2 2578899999
Q ss_pred HHHHHHHHHHcC---CCCCccCCeEEeecCCCCceeEEEecccCccCCceeeeEeEEEEEEE--CCceEEEEEecCCCCC
Q 020196 170 VGEVIKCLAEEE---LIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEK--DGQKFLWIGKRSQVKS 244 (329)
Q Consensus 170 l~~v~~~Lr~~g---~l~gWR~El~~V~~~~g~~~l~~iERaa~~lfGi~~~gVHlngyv~~--d~~~~lwI~rRS~~K~ 244 (329)
+++++.+|+..+ ...+||||+|.||- ..+|+..|||+++++||+.+||||+|||++. -+..+||++|||++|+
T Consensus 83 ~~~~~~~~~~~~~l~~a~qwrne~Y~v~~--~kkp~l~vERa~~~lfGv~~yGvhingYV~~pk~~~l~iWvprRS~TKq 160 (306)
T KOG4313|consen 83 LAKVLEHWRHNNTFGIADQWRNELYTVYK--SKKPVLAVERAATPLFGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQ 160 (306)
T ss_pred HHHHHHHHHHhccccchhcccceeeEEEe--cCcceeEeeecccceeeEEEeeeeeeeeecCCCcCceEEEecccCCccc
Confidence 999999998875 34789999999993 3689999999999999999999999999987 3457999999999999
Q ss_pred CCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEE-EecCCceeeEEEEEEEEEeCCCccccCC
Q 020196 245 TYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYT-DINGFSYKRDVIFCYDLKLPEDFVPMNQ 323 (329)
Q Consensus 245 t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~-~~~~~gi~~Ev~yvYdLeLp~df~P~p~ 323 (329)
||||||||+||||+..|.++.|+++||+.|||+|+.+++.++++.|.|||. +++..++.+|++|+|||+||.||+|+|+
T Consensus 161 TWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~n 240 (306)
T KOG4313|consen 161 TWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVFDLELPLDFIPQNN 240 (306)
T ss_pred cCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceEEEeccCchhhcCCCC
Confidence 999999999999999999999999999999999999998899999999998 5777889999999999999999999999
Q ss_pred CCCcCC
Q 020196 324 GNCIKA 329 (329)
Q Consensus 324 DgEVea 329 (329)
||||++
T Consensus 241 DGEV~~ 246 (306)
T KOG4313|consen 241 DGEVQA 246 (306)
T ss_pred CCceee
Confidence 999985
No 3
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=100.00 E-value=3.6e-35 Score=260.10 Aligned_cols=144 Identities=44% Similarity=0.818 Sum_probs=130.5
Q ss_pred CccCCeEEeecCCCCceeEEEecccCccCCceeeeEeEEEEEEEC-CceEEEEEecCCCCCCCCCCeeccccCCCCCCCC
Q 020196 185 DIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKD-GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIA 263 (329)
Q Consensus 185 gWR~El~~V~~~~g~~~l~~iERaa~~lfGi~~~gVHlngyv~~d-~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs 263 (329)
|||||+|+|||++| ++++.++|++++.+|+.|++||+++|+.++ ++++||+||||++|.+|||+||+++|||+.+||+
T Consensus 1 ~~~~E~~~v~d~~~-~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~ 79 (180)
T cd03676 1 GWRNELYAVYGPFG-EPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEG 79 (180)
T ss_pred CCcCcceeeECCCC-CEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCC
Confidence 79999999999987 577899999999999999999999999853 2589999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEe-cCCceeeEEEEEEEEEeCCCccccCCCCCcCC
Q 020196 264 CGENIIKECEEEAGIPRSISNRARPVGAVSYTDI-NGFSYKRDVIFCYDLKLPEDFVPMNQGNCIKA 329 (329)
Q Consensus 264 ~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~-~~~gi~~Ev~yvYdLeLp~df~P~p~DgEVea 329 (329)
+.+||+||++||+||+....+.+.++|.+.|.+. .+.++.+++.|+|.+.++.+..+.++++||++
T Consensus 80 ~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~ 146 (180)
T cd03676 80 PEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVES 146 (180)
T ss_pred HHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeE
Confidence 9999999999999999876555778899999886 56678899999999999877778899999874
No 4
>PLN02791 Nudix hydrolase homolog
Probab=99.84 E-value=1.2e-20 Score=199.89 Aligned_cols=140 Identities=21% Similarity=0.151 Sum_probs=113.2
Q ss_pred cCCeEEeecCCCCceeEEEecccCccCCceeeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHH
Q 020196 187 QNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGE 266 (329)
Q Consensus 187 R~El~~V~~~~g~~~l~~iERaa~~lfGi~~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~e 266 (329)
.+|+++|||.+|+++.....|+.++..|.+|++||+..+.. .+++|++||||.+|.+|||+||++||||+.+||++++
T Consensus 2 ~eE~~DI~De~g~~~G~~~~R~evH~~Gl~HrAvhVwIfn~--~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~e 79 (770)
T PLN02791 2 MEEHLDVLTAAGEKTGVSKPRGEVHRDGDYHRAVHVWIYSE--STQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLL 79 (770)
T ss_pred CceEEEEECCCCCCCCccccHHhhccCCCceEEEEEEEEEC--CCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHH
Confidence 47999999999876655689999999999999999977753 2468999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCcccCCceeeeEEEEEEe--cCCceeeEEEEEEEEEeCCC--c-cccCCCCCcCC
Q 020196 267 NIIKECEEEAGIPRSISNRARPVGAVSYTDI--NGFSYKRDVIFCYDLKLPED--F-VPMNQGNCIKA 329 (329)
Q Consensus 267 a~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~--~~~gi~~Ev~yvYdLeLp~d--f-~P~p~DgEVea 329 (329)
+++||++||+||.... +.+.++|.+.+... .+...++|+.++|.+....+ . ..++|++||++
T Consensus 80 AA~REL~EELGI~l~~-~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~ 146 (770)
T PLN02791 80 SAQRELEEELGIILPK-DAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSA 146 (770)
T ss_pred HHHHHHHHHhCCCCCh-hheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhhe
Confidence 9999999999998643 34567777655432 23346789999998764221 1 34678899974
No 5
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.84 E-value=2.1e-20 Score=175.67 Aligned_cols=139 Identities=10% Similarity=0.036 Sum_probs=108.7
Q ss_pred cCCeEEeecCCCCceeEEEecccCcc------CCceeeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCC
Q 020196 187 QNELYPVASTFGSPIFFSLDRAAAPY------FGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPH 260 (329)
Q Consensus 187 R~El~~V~~~~g~~~l~~iERaa~~l------fGi~~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~ 260 (329)
.+|.+.|||.++ ++++.+.|..++. .|++|+++|+..+. ..++|++||||+.|.+|||+||++||||+.+
T Consensus 21 ~~e~v~lvDe~d-~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n---~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ 96 (247)
T PLN02552 21 FEDECILVDEND-NVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFN---SKYELLLQQRAATKVTFPLVWTNTCCSHPLY 96 (247)
T ss_pred hcCeEEEEcCCC-CEEeeeEHhhhhccccccCCCceEEEEEEEEEc---CCCeEEEEEecCCCCCCCcceecccCCcccc
Confidence 458999999986 6888999988875 79999999997663 4569999999999999999999999999998
Q ss_pred CCC-----------------HHHHHHHHHHhhhCCCCccc--CCceeeeEEEEEEecC-------CceeeEEEEEEEEEe
Q 020196 261 GIA-----------------CGENIIKECEEEAGIPRSIS--NRARPVGAVSYTDING-------FSYKRDVIFCYDLKL 314 (329)
Q Consensus 261 GEs-----------------~~ea~iRE~~EEaGL~~~~~--~~~~~~G~IsY~~~~~-------~gi~~Ev~yvYdLeL 314 (329)
||+ +.+||+||+.||+||....+ .++.+++.+.|..... ...+.|+.|+|-...
T Consensus 97 ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~ 176 (247)
T PLN02552 97 GQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRP 176 (247)
T ss_pred ccccccccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEe
Confidence 744 57899999999999996543 3477888888876542 223567767654322
Q ss_pred CCCccccCCCCCcCC
Q 020196 315 PEDFVPMNQGNCIKA 329 (329)
Q Consensus 315 p~df~P~p~DgEVea 329 (329)
-.+..++++.+||++
T Consensus 177 ~~~~~l~lq~eEV~~ 191 (247)
T PLN02552 177 VRDVKVNPNPDEVAD 191 (247)
T ss_pred cCCCcccCCHHHhhe
Confidence 233345778889864
No 6
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.84 E-value=2.7e-20 Score=163.03 Aligned_cols=133 Identities=13% Similarity=0.118 Sum_probs=107.4
Q ss_pred CCeEEeecCCCCceeEEEecccCccCCce-eeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHH
Q 020196 188 NELYPVASTFGSPIFFSLDRAAAPYFGIK-AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGE 266 (329)
Q Consensus 188 ~El~~V~~~~g~~~l~~iERaa~~lfGi~-~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~e 266 (329)
.|+++|||+++ .+.+..+|..++..|.. +.+||+..+. +++++|++||+..|..|||.||..+||++++||++++
T Consensus 1 ~e~~~~~d~~~-~~~g~~~r~~~~~~~~~~~~~v~v~i~~---~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~e 76 (165)
T cd02885 1 EELVILVDEDD-NPIGTAEKLEAHLKGTLLHRAFSVFLFN---SKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKD 76 (165)
T ss_pred CcEEEEECCCC-CCccccCHHHHhhcCCcceeEEEEEEEc---CCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHH
Confidence 48999999987 56779999999999999 9999995543 4468999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCcccCCceeeeEEEEEEecCC-ceeeEEEEEEEEEeCCCccccCCCCCcC
Q 020196 267 NIIKECEEEAGIPRSISNRARPVGAVSYTDINGF-SYKRDVIFCYDLKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 267 a~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~-gi~~Ev~yvYdLeLp~df~P~p~DgEVe 328 (329)
|++||++||+||..+....+ ++.+.|...... ....++.++|.++...+. .++++||+
T Consensus 77 aa~REl~EEtGl~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~--~~~~~Ev~ 135 (165)
T cd02885 77 AAQRRLREELGITGDLLELV--LPRFRYRAPDDGGLVEHEIDHVFFARADVTL--IPNPDEVS 135 (165)
T ss_pred HHHHHHHHHhCCCccchhhc--cceEEEEEEcCCCceeeEEEEEEEEEeCCCC--CCCcccee
Confidence 99999999999998764322 466777654433 234567888888876553 34667775
No 7
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.83 E-value=7e-20 Score=159.96 Aligned_cols=129 Identities=15% Similarity=0.099 Sum_probs=103.8
Q ss_pred EEeecCCCCceeEEEecccCcc-CCceeeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHH
Q 020196 191 YPVASTFGSPIFFSLDRAAAPY-FGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENII 269 (329)
Q Consensus 191 ~~V~~~~g~~~l~~iERaa~~l-fGi~~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~i 269 (329)
+.|||.+| .+++.+.|..++. .|+.|.+|++.++ |+++++|++||+.+|..+||+||.++||++.+|| .+|++
T Consensus 1 ~~~~d~~~-~~~g~~~r~~~~~~~g~~h~~v~v~v~---~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~ 74 (158)
T TIGR02150 1 VILVDEND-NPIGTASKAEVHLQETPLHRAFSVFLF---NEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAI 74 (158)
T ss_pred CEEECCCC-CEeeeeeHHHhhhcCCCeEEEEEEEEE---cCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHH
Confidence 46899986 6778899998885 6999999997544 3456899999999999999999999999999999 49999
Q ss_pred HHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEEEEeCCCccccCCCCCcCC
Q 020196 270 KECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQGNCIKA 329 (329)
Q Consensus 270 RE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYdLeLp~df~P~p~DgEVea 329 (329)
||++||+||.....+ +..++.+.|....+.+. .++.++|.+..+.+ +.++++||++
T Consensus 75 REl~EE~Gl~~~~~~-l~~~~~~~~~~~~~~g~-~~~~~~f~~~~~~~--~~~~~~Ev~~ 130 (158)
T TIGR02150 75 RRLREELGIPADDVP-LTVLPRFSYRARDAWGE-HELCPVFFARAPVP--LNPNPEEVAE 130 (158)
T ss_pred HHHHHHHCCCccccc-eEEcceEEEEEecCCCc-EEEEEEEEEecCCc--ccCChhHeee
Confidence 999999999887643 45666677765543333 57788898888754 5667788864
No 8
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.81 E-value=3e-19 Score=159.54 Aligned_cols=134 Identities=17% Similarity=0.183 Sum_probs=106.9
Q ss_pred cCCeEEeecCCCCceeEEEecccCcc-CCceeeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHH
Q 020196 187 QNELYPVASTFGSPIFFSLDRAAAPY-FGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACG 265 (329)
Q Consensus 187 R~El~~V~~~~g~~~l~~iERaa~~l-fGi~~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ 265 (329)
..|+++|||+++ .+++.++|..++. .|..+.+|++-.+ +++++++++||+..|..+||+||+.+||++++||+++
T Consensus 4 ~~E~~~~vd~~~-~~~g~~~r~~~~~~~~~~h~av~v~i~---~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~ 79 (184)
T PRK03759 4 ETELVVLLDEQG-VPTGTAEKAAAHTADTPLHLAFSCYLF---DADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLE 79 (184)
T ss_pred CceeEEEECCCC-CCcccccHHHHHhcCCCeeeEEEEEEE---cCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHH
Confidence 469999999986 6788999999996 7999999997443 3456899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCcccCCceeeeEEEEEEec-CCceeeEEEEEEEEEeCCCccccCCCCCcC
Q 020196 266 ENIIKECEEEAGIPRSISNRARPVGAVSYTDIN-GFSYKRDVIFCYDLKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 266 ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~-~~gi~~Ev~yvYdLeLp~df~P~p~DgEVe 328 (329)
+|++||+.||+||...... ..++.+.|.... .+.+..++.++|.+..+.+ +.++++||.
T Consensus 80 ~aa~REl~EEtGl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~--~~~~~~Ev~ 139 (184)
T PRK03759 80 DAVIRRCREELGVEITDLE--LVLPDFRYRATDPNGIVENEVCPVFAARVTSA--LQPNPDEVM 139 (184)
T ss_pred HHHHHHHHHHhCCCccccc--cccceEEEEEecCCCceeeEEEEEEEEEECCC--CCCChhHee
Confidence 9999999999999875322 234556665433 2335567888898888743 566667765
No 9
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=3.6e-19 Score=151.95 Aligned_cols=112 Identities=25% Similarity=0.252 Sum_probs=89.0
Q ss_pred eeeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEE
Q 020196 216 KAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYT 295 (329)
Q Consensus 216 ~~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~ 295 (329)
.|++||+.++...+++++||++||+..|..|||+||+++||++..|||+.+||+||++||+||..+. .++.++|.+.+.
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~-~~l~~~~~~~~~ 79 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSA-DDLIPLGTFKIE 79 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCCh-HHeEEeeEEEEe
Confidence 4788999877765666899999999999999999999899999999999999999999999998764 346788888776
Q ss_pred Ee-cCCceeeEEEEEEEEEeCCC-ccccCCCCCcC
Q 020196 296 DI-NGFSYKRDVIFCYDLKLPED-FVPMNQGNCIK 328 (329)
Q Consensus 296 ~~-~~~gi~~Ev~yvYdLeLp~d-f~P~p~DgEVe 328 (329)
+. .+.....++.++|.+.+... -.+.++++||.
T Consensus 80 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~ 114 (144)
T cd04692 80 YDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVA 114 (144)
T ss_pred ccccCCCccceEEEEEEEeccCChhhcCCChhHhh
Confidence 54 33334456677777777542 24567778875
No 10
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.74 E-value=1.7e-17 Score=148.13 Aligned_cols=129 Identities=21% Similarity=0.173 Sum_probs=98.3
Q ss_pred cCCeEEeecCCCCceeEEEecccCccCCceeeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHH
Q 020196 187 QNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGE 266 (329)
Q Consensus 187 R~El~~V~~~~g~~~l~~iERaa~~lfGi~~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~e 266 (329)
-.|+++|||.++ .+++.++|..++.-|+.+.++++-.+ |.++++++++|+..|..+||+||.++||++.+|||+++
T Consensus 8 ~~e~~~~~d~~~-~~~g~~~~~~~~~~~~~h~~~~v~v~---~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~e 83 (180)
T PRK15393 8 STEWVDIVNENN-EVIAQASREQMRAQCLRHRATYIVVH---DGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLE 83 (180)
T ss_pred CceEEEEECCCC-CEeeEEEHHHHhhCCCceEEEEEEEE---CCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHH
Confidence 368999999986 68888999999999999999988543 45578999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEEEEeCCCccccCCCCCcC
Q 020196 267 NIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 267 a~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYdLeLp~df~P~p~DgEVe 328 (329)
|++||+.||+||.... ....|.+.|... . . ..+.++|.+....+ +.+++.|+.
T Consensus 84 AA~REL~EEtGl~~~~---~~~~~~~~~~~~--~-~-~~~~~~f~~~~~~~--~~~~~~E~~ 136 (180)
T PRK15393 84 SARREAEEELGIAGVP---FAEHGQFYFEDE--N-C-RVWGALFSCVSHGP--FALQEEEVS 136 (180)
T ss_pred HHHHHHHHHHCCCCcc---ceeceeEEecCC--C-c-eEEEEEEEEEeCCC--CCCChHHee
Confidence 9999999999997543 234565544322 1 1 22344565555433 334555653
No 11
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.68 E-value=7.9e-17 Score=143.70 Aligned_cols=137 Identities=12% Similarity=0.023 Sum_probs=112.9
Q ss_pred cCCeEEeecCCCCceeEEEecccCccCCce--eeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCH
Q 020196 187 QNELYPVASTFGSPIFFSLDRAAAPYFGIK--AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIAC 264 (329)
Q Consensus 187 R~El~~V~~~~g~~~l~~iERaa~~lfGi~--~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~ 264 (329)
.+|..-+.+++| .+.+..++.+++..--. |++.-+..| |..++++|+||+..|.+|||.|+|+|+||.-+||+.
T Consensus 2 ~~e~vill~~~d-~~~G~~~k~~~Ht~d~~~LHrAFS~~lF---ne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~ 77 (185)
T COG1443 2 MTEDVILLNDDD-VPTGTAEKLAAHTGDTPRLHRAFSSFLF---NERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESN 77 (185)
T ss_pred CceeEEEECCCC-CccccchhhhhhccccHHHHhhhheeEE---CCCCceeeehhhhhcccCcccccccccCCCcCCCch
Confidence 357777888875 68899999999885433 666655434 466789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCC-ceeeEEEEEEEEEeCCCccccCCCCCcCC
Q 020196 265 GENIIKECEEEAGIPRSISNRARPVGAVSYTDINGF-SYKRDVIFCYDLKLPEDFVPMNQGNCIKA 329 (329)
Q Consensus 265 ~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~-gi~~Ev~yvYdLeLp~df~P~p~DgEVea 329 (329)
.+|++|.+.+|+||+.+.......+-.+.|...+.+ ..+.|+.++|-..+.. .|.|+++||.+
T Consensus 78 ~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~--~~~~npdEV~~ 141 (185)
T COG1443 78 EDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDGIVENEICPVLAARLDS--ALDPNPDEVMD 141 (185)
T ss_pred HHHHHHHHHHHhCCCCcccCccccccceEEeccCCCCcceeeeeeEEEEeecC--CCCCChHHhhh
Confidence 999999999999999986556677778999887654 4688988888888876 57788899975
No 12
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=2.1e-14 Score=120.02 Aligned_cols=98 Identities=24% Similarity=0.255 Sum_probs=70.5
Q ss_pred eEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEec
Q 020196 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDIN 298 (329)
Q Consensus 219 gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~ 298 (329)
++++..+ +.+++|+++||+.++..+||+|+..+||++..||++.+|++||++||+||+.. ++..+|.+.|....
T Consensus 2 ~~~v~i~---~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~---~l~~~~~~~~~~~~ 75 (126)
T cd04697 2 ATYIFVF---NSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGV---QLTPLGLFYYDTDG 75 (126)
T ss_pred eEEEEEE---cCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCcc---ccEEeeEEEecCCC
Confidence 4555443 34468999999999999999999988999999999999999999999999876 34566766553221
Q ss_pred CCceeeEEEEEEEEEeCCCccccCCCCCcC
Q 020196 299 GFSYKRDVIFCYDLKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 299 ~~gi~~Ev~yvYdLeLp~df~P~p~DgEVe 328 (329)
.....++|.+....+ +.++++|+.
T Consensus 76 ----~~~~~~~f~~~~~~~--~~~~~~E~~ 99 (126)
T cd04697 76 ----NRVWGKVFSCVYDGP--LKLQEEEVE 99 (126)
T ss_pred ----ceEEEEEEEEEECCC--CCCCHhHhh
Confidence 123344565655444 345555654
No 13
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=9.1e-14 Score=115.52 Aligned_cols=91 Identities=24% Similarity=0.346 Sum_probs=63.8
Q ss_pred CceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEE
Q 020196 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFC 309 (329)
Q Consensus 230 ~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yv 309 (329)
.+++++++||+..|..+||+|+..+||+++.||++ +|++||++||+||..... +....+. |.+... +.. . .++
T Consensus 10 ~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~-~~~~~~~--~~~~~~-~~~-~-~~~ 82 (127)
T cd04693 10 SKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFS-ELRPLFR--YFFEAE-GFD-D-YYL 82 (127)
T ss_pred CCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChh-hcEEEEE--EEeecC-CeE-E-EEE
Confidence 34589999999999999999998889999999999 999999999999998753 3444444 333322 222 2 233
Q ss_pred EEEEeCCCccccCCCCCcC
Q 020196 310 YDLKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 310 YdLeLp~df~P~p~DgEVe 328 (329)
|.+.+... .+.++++|++
T Consensus 83 ~~~~~~~~-~~~~~~~E~~ 100 (127)
T cd04693 83 FYADVEIG-KLILQKEEVD 100 (127)
T ss_pred EEecCccc-ccccCHHHhh
Confidence 43433322 3455666764
No 14
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.45 E-value=3.5e-13 Score=117.35 Aligned_cols=103 Identities=18% Similarity=0.188 Sum_probs=72.8
Q ss_pred eeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCC-CCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEE
Q 020196 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHG-IACGENIIKECEEEAGIPRSISNRARPVGAVSYT 295 (329)
Q Consensus 217 ~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~G-Es~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~ 295 (329)
+.+|++-.+.. +++.+++++||+..|..+||+|+ ++||+++.| |++++||+||++||+||.... ...++.+...
T Consensus 2 ~~av~v~l~~~-~~~~~vLL~~R~~~~~~~~g~w~-lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~---~~~l~~~~~~ 76 (157)
T cd03426 2 RAAVLVLLVER-EGELRVLLTKRASHLRSHPGQVA-FPGGKVDPGDEDPVATALREAEEEIGLPPDS---VEVLGRLPPY 76 (157)
T ss_pred ceEEEEEEEeC-CCceEEEEEEcccccccCCCcEE-CCCCCcCCCcCCHHHHHHHHHHHHhCCCccc---eEEEEECCCc
Confidence 45678866543 44579999999999989999997 789999999 999999999999999998764 3455554322
Q ss_pred EecCCceeeEEEEEEEEEeCCCccccCCCCCcC
Q 020196 296 DINGFSYKRDVIFCYDLKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 296 ~~~~~gi~~Ev~yvYdLeLp~df~P~p~DgEVe 328 (329)
+... ...+++|.+.+..+..+.++++||+
T Consensus 77 ~~~~----~~~v~~~~~~~~~~~~~~~~~~E~~ 105 (157)
T cd03426 77 YTRS----GFVVTPVVGLVPPPLPLVLNPDEVA 105 (157)
T ss_pred cccC----CCEEEEEEEEECCCCCCCCCHHHhh
Confidence 2111 1224445555554434556666765
No 15
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.44 E-value=9.1e-13 Score=108.96 Aligned_cols=89 Identities=21% Similarity=0.180 Sum_probs=65.3
Q ss_pred eEEEEEecCCC-CCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEE
Q 020196 232 KFLWIGKRSQV-KSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCY 310 (329)
Q Consensus 232 ~~lwI~rRS~~-K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvY 310 (329)
++++++||+.. |..|||+|+ ++||++..||++++|++||++||+||..+... . .....|... ...+..++|
T Consensus 12 g~vLl~~r~~~~~~~~~g~w~-~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~--~~~~~~~~~----~~~~~~~~f 83 (122)
T cd04682 12 GRLLLQLRDDKPGIPYPGHWD-LPGGHREGGETPLECVLRELLEEIGLTLPESR-I--PWFRVYPSA----SPPGTEHVF 83 (122)
T ss_pred CEEEEEEccCCCCCCCCCcEe-CCCccccCCCCHHHHHHHHHHHHhCCcccccc-c--ceeEecccC----CCCceEEEE
Confidence 68999999988 889999997 88999999999999999999999999876421 1 122233322 124567778
Q ss_pred EEEeCCCccccCCCCCcC
Q 020196 311 DLKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 311 dLeLp~df~P~p~DgEVe 328 (329)
.+.+.....+..+++|++
T Consensus 84 ~~~~~~~~~~~~~~~E~~ 101 (122)
T cd04682 84 VVPLTAREDAILFGDEGQ 101 (122)
T ss_pred EEEEecCCCccccCchhh
Confidence 887765433345566664
No 16
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.41 E-value=1.7e-12 Score=108.02 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=68.3
Q ss_pred eEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEE-EEEEe
Q 020196 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAV-SYTDI 297 (329)
Q Consensus 219 gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~I-sY~~~ 297 (329)
.|.+-.|.. .+++++++.||+.. +||+|+ ++||+++.||++.+|++||++||+||.......+...+.+ .|...
T Consensus 3 ~~~v~~~~~-~~~~~vLL~~r~~~---~~~~w~-~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 77 (129)
T cd04664 3 SVLVVPYRL-TGEGRVLLLRRSDK---YAGFWQ-SVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFT 77 (129)
T ss_pred EEEEEEEEe-CCCCEEEEEEeCCC---CCCccc-ccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccC
Confidence 344543432 23568999999875 999999 7899999999999999999999999987543222222221 22222
Q ss_pred cCCceeeEEEEEEEEEeCCCccccCCCCCcC
Q 020196 298 NGFSYKRDVIFCYDLKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 298 ~~~gi~~Ev~yvYdLeLp~df~P~p~DgEVe 328 (329)
..+ .....++|.+.++... +...++|++
T Consensus 78 -~~~-~~~~~~~f~~~~~~~~-~~~~~~E~~ 105 (129)
T cd04664 78 -DNG-RVWTEHPFAFHLPSDA-VVTLDWEHD 105 (129)
T ss_pred -CCc-eEEEEeEEEEEcCCCC-cccCCcccc
Confidence 222 3456788988887654 334556664
No 17
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.35 E-value=8.1e-12 Score=105.92 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=51.1
Q ss_pred eeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcc
Q 020196 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (329)
Q Consensus 218 ~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~ 282 (329)
+.|+...... +++++++||+..|..|||+|+ ++||++++|||+.+|++||++||+||....
T Consensus 4 r~~~~~ii~~---~~~vLl~~R~~~~~~~~g~W~-lPgG~ve~gEs~~~aa~REl~EEtGl~~~~ 64 (141)
T PRK15472 4 RTIVCPLIQN---DGAYLLCKMADDRGVFPGQWA-LSGGGVEPGERIEEALRREIREELGEQLLL 64 (141)
T ss_pred eeEEEEEEec---CCEEEEEEecccCCCCCCcee-CCcccCCCCCCHHHHHHHHHHHHHCCceee
Confidence 4566644432 358999999988889999998 679999999999999999999999997654
No 18
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.33 E-value=2.3e-11 Score=99.63 Aligned_cols=90 Identities=24% Similarity=0.334 Sum_probs=67.5
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCc--eeeEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFS--YKRDVIFC 309 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~g--i~~Ev~yv 309 (329)
+++++.||+..+ ++|+|+ ++||+++.||++.+|++||++||+|+.... ...+|.+.+.+....+ ....+.++
T Consensus 11 ~~vLl~~~~~~~--~~~~w~-lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (128)
T cd04684 11 GKLLLIQKNGGP--YEGRWD-LPGGGIEPGESPEEALHREVLEETGLTVEI---GRRLGSASRYFYSPDGDYDAHHLCVF 84 (128)
T ss_pred CEEEEEEccCCC--CCCeEE-CCCcccCCCCCHHHHHHHHHHHHhCcEeec---ceeeeEEEEEEECCCCCeeccEEEEE
Confidence 578888998764 899997 789999999999999999999999998765 3567777765544332 23567888
Q ss_pred EEEEeCCCccc-cCCCCCc
Q 020196 310 YDLKLPEDFVP-MNQGNCI 327 (329)
Q Consensus 310 YdLeLp~df~P-~p~DgEV 327 (329)
|.+.++.+..+ ...++|+
T Consensus 85 f~~~~~~~~~~~~~~~~e~ 103 (128)
T cd04684 85 YDARVVGGALPVQEPGEDS 103 (128)
T ss_pred EEEEEecCccccCCCCCCc
Confidence 99988765431 3344443
No 19
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.30 E-value=6.8e-12 Score=102.72 Aligned_cols=104 Identities=26% Similarity=0.365 Sum_probs=76.6
Q ss_pred eeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEE
Q 020196 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTD 296 (329)
Q Consensus 217 ~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~ 296 (329)
+.+|.+- +.++. +++++.||+..+..++|+|. ++||++..||++.+|++||+.||+|+.... ....+...|..
T Consensus 2 ~~~v~~i--i~~~~-~~vLl~~r~~~~~~~~~~~~-~pgG~i~~~E~~~~aa~REl~EE~g~~~~~---~~~~~~~~~~~ 74 (134)
T PF00293_consen 2 RRAVGVI--IFNED-GKVLLIKRSRSPITFPGYWE-LPGGGIEPGESPEEAARRELKEETGLDVSP---LELLGLFSYPS 74 (134)
T ss_dssp EEEEEEE--EEETT-TEEEEEEESTTSSSSTTEEE-SSEEEECTTSHHHHHHHHHHHHHHSEEEEE---EEEEEEEEEEE
T ss_pred CCEEEEE--EEeCC-cEEEEEEecCCCCCCCCeEe-cceeeEEcCCchhhhHHhhhhhcccceecc---cccceeeeecc
Confidence 4456653 33333 39999999998888999996 799999999999999999999999998843 35666677766
Q ss_pred ecCCceeeEEEEEEEEEeCCCc-cccCCCCCcC
Q 020196 297 INGFSYKRDVIFCYDLKLPEDF-VPMNQGNCIK 328 (329)
Q Consensus 297 ~~~~gi~~Ev~yvYdLeLp~df-~P~p~DgEVe 328 (329)
..... .....+.|.+.++.+. .+.++++|+.
T Consensus 75 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~ 106 (134)
T PF00293_consen 75 PSGDP-EGEIVIFFIAELPSEQSEIQPQDEEIS 106 (134)
T ss_dssp TTTES-SEEEEEEEEEEEEEEESECHTTTTTEE
T ss_pred cCCCc-ccEEEEEEEEEEeCCccccCCCCccEE
Confidence 54432 2456667777777654 5666666653
No 20
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.25 E-value=7.1e-11 Score=102.25 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=66.9
Q ss_pred CceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccC-CceeeeEEEEEEec--CCc---ee
Q 020196 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN-RARPVGAVSYTDIN--GFS---YK 303 (329)
Q Consensus 230 ~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~-~~~~~G~IsY~~~~--~~g---i~ 303 (329)
.+++++++||+..|..|||+|+ ++||++.+||++.+|++||++||+||...... ..+.+|...+.+.. ..+ .+
T Consensus 11 ~~~~vLl~rr~~~~~~~~g~w~-~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 89 (143)
T cd04694 11 SDQKLLLTRRASSLRIFPNVWV-PPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRH 89 (143)
T ss_pred CCCEEEEEEECCCCCCCCCeEE-CcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCCcccce
Confidence 4568999999998889999997 67999999999999999999999999876431 13456655433221 111 23
Q ss_pred eEEEEEEEEEeCC----CccccCCCCCcCC
Q 020196 304 RDVIFCYDLKLPE----DFVPMNQGNCIKA 329 (329)
Q Consensus 304 ~Ev~yvYdLeLp~----df~P~p~DgEVea 329 (329)
..+.|.|....+. ...++++++||++
T Consensus 90 ~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~ 119 (143)
T cd04694 90 HIVVYILVKSSETHQQLQARLQPDPNEVSA 119 (143)
T ss_pred eEEEEEEEEeccccccccccccCChhhccc
Confidence 3445544332221 1134566778864
No 21
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.23 E-value=1.3e-10 Score=96.21 Aligned_cols=90 Identities=19% Similarity=0.141 Sum_probs=63.9
Q ss_pred CceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEE
Q 020196 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFC 309 (329)
Q Consensus 230 ~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yv 309 (329)
.++++++.||+.. ..+|.|+ ++||+++.||++.+|++||++||+||..... .+++.+.+...... .+.+.++
T Consensus 12 ~~~~vLL~~r~~~--~~~~~w~-lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~---~~~~~~~~~~~~~~--~~~~~~~ 83 (125)
T cd04679 12 DDGKLLLVKRLRA--PEAGHWG-IPGGKVDWMEAVEDAVVREIEEETGLSIHST---RLLCVVDHIIEEPP--QHWVAPV 83 (125)
T ss_pred CCCEEEEEEecCC--CCCCeEe-CCeeeccCCCCHHHHHHHHHHHHHCCCcccc---eEEEEEeecccCCC--CeEEEEE
Confidence 4458999899753 3589997 6899999999999999999999999987653 46676665443322 2356677
Q ss_pred EEEEeCCCcccc-CCCCCcC
Q 020196 310 YDLKLPEDFVPM-NQGNCIK 328 (329)
Q Consensus 310 YdLeLp~df~P~-p~DgEVe 328 (329)
|.+....+. +. +.++|++
T Consensus 84 f~~~~~~~~-~~~~~~~E~~ 102 (125)
T cd04679 84 YLAENFSGE-PRLMEPDKLL 102 (125)
T ss_pred EEEeecCCc-cccCCCcccc
Confidence 877765442 33 3445664
No 22
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.23 E-value=8.9e-11 Score=97.41 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=58.6
Q ss_pred CceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEE
Q 020196 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFC 309 (329)
Q Consensus 230 ~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yv 309 (329)
.++++++.||+..+ ++|+|+ ++||+++.||++.+|++||++||+||.... ...+|.+...+...+.....+.+.
T Consensus 11 ~~~~vLL~~r~~~~--~~~~w~-~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 84 (130)
T cd04681 11 EDGELLVVRRAREP--GKGTLD-LPGGFVDPGESAEEALIREIREETGLKVTE---LSYLFSLPNTYPYGGMEYDTLDLF 84 (130)
T ss_pred CCCcEEEEEecCCC--CCCcEe-CCceeecCCCCHHHHHHHHHHHHhCCcccc---eeEEEeecceeeeCCceeEEEEEE
Confidence 34589999998653 699998 689999999999999999999999998764 345665543333222222344455
Q ss_pred EEEEeCCC
Q 020196 310 YDLKLPED 317 (329)
Q Consensus 310 YdLeLp~d 317 (329)
|.+.++.+
T Consensus 85 ~~~~~~~~ 92 (130)
T cd04681 85 FVCQVDDK 92 (130)
T ss_pred EEEEeCCC
Confidence 77777644
No 23
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.22 E-value=1.7e-10 Score=94.46 Aligned_cols=90 Identities=14% Similarity=0.186 Sum_probs=60.8
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYd 311 (329)
+++++.||+..+ .+||+|+ ++||++..||++.+|++||++||+||.... .....++.+.+..... ...+.+.|.
T Consensus 11 ~~vLL~~r~~~~-~~~~~w~-lPgG~ve~gE~~~~aa~REl~EEtGl~v~~-~~~~~~~~~~~~~~~~---~~~~~~~f~ 84 (120)
T cd04683 11 DEVLLQRRANTG-YMDGQWA-LPAGHLEKGEDAVTAAVREAREEIGVTLDP-EDLRLAHTMHRRTEDI---ESRIGLFFT 84 (120)
T ss_pred CEEEEEEccCCC-CCCCeEe-CCccccCCCCCHHHHHHHHHHHHHCCccCh-hheEEEEEEEecCCCC---ceEEEEEEE
Confidence 479999998654 4699998 789999999999999999999999998763 2345666654433221 234445566
Q ss_pred EEeCCCccccC-CCCCcC
Q 020196 312 LKLPEDFVPMN-QGNCIK 328 (329)
Q Consensus 312 LeLp~df~P~p-~DgEVe 328 (329)
+....+ .|.+ +++|+.
T Consensus 85 ~~~~~~-~~~~~~~~e~~ 101 (120)
T cd04683 85 VRRWSG-EPRNCEPDKCA 101 (120)
T ss_pred EEeecC-ccccCCCCcEe
Confidence 654333 2433 334543
No 24
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.21 E-value=1.2e-10 Score=96.13 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=57.3
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYd 311 (329)
+++++.||+..+..+||+|+ ++||+++.||++++|++||++||+|+.... ...++.+.+ ..+ ....++.|.
T Consensus 11 ~~vLL~rR~~~~~~~~g~w~-lPgG~ve~gE~~~~aa~REl~EEtGl~~~~---~~~l~~~~~--~~~---~~~~~~~~~ 81 (117)
T cd04691 11 DKVLLERRSLTKNADPGKLN-IPGGHIEAGESQEEALLREVQEELGVDPLS---YTYLCSLYH--PTS---ELQLLHYYV 81 (117)
T ss_pred CEEEEEEeCCCCCCCCCeEE-CcceeecCCCCHHHHHHHHHHHHHCCCccc---ceEEEEEec--cCC---CeEEEEEEE
Confidence 58999999988878999995 899999999999999999999999998532 234444332 111 234456677
Q ss_pred EEeCCC
Q 020196 312 LKLPED 317 (329)
Q Consensus 312 LeLp~d 317 (329)
+....+
T Consensus 82 ~~~~~~ 87 (117)
T cd04691 82 VTFWQG 87 (117)
T ss_pred EEEecC
Confidence 766543
No 25
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.20 E-value=1.1e-11 Score=112.95 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=105.6
Q ss_pred CeEEeecCCCCceeEEEecccCc-----cCCceeeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCC----
Q 020196 189 ELYPVASTFGSPIFFSLDRAAAP-----YFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLP---- 259 (329)
Q Consensus 189 El~~V~~~~g~~~l~~iERaa~~-----lfGi~~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~---- 259 (329)
|..-++|++. .+++.--..-++ .-|+.|++.|+-.| +.+.++++||||..|-||||.|-|+|++|.-
T Consensus 20 e~ci~VDenD-~~IG~~tk~~cHl~eni~kglLHRaFSVFlF---ns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~ 95 (225)
T KOG0142|consen 20 ENCILVDEND-NVIGAGTKKNCHLMENIEKGLLHRAFSVFLF---NSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPG 95 (225)
T ss_pred hheEeecccc-ccccchhhhhhhcchhHHhhhhhheeeEEEe---cCcchHHHhhhccccccccchhhhhhhcCcCCChh
Confidence 3444566654 333333333344 56889999999555 4668999999999999999999999999975
Q ss_pred -----CCCCHHHHHHHHHHhhhCCCCcccC--CceeeeEEEEEEecCCceeeEEEEEEEEEeCCCccccCCCCCcCC
Q 020196 260 -----HGIACGENIIKECEEEAGIPRSISN--RARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQGNCIKA 329 (329)
Q Consensus 260 -----~GEs~~ea~iRE~~EEaGL~~~~~~--~~~~~G~IsY~~~~~~gi~~Ev~yvYdLeLp~df~P~p~DgEVea 329 (329)
.+..+..||+|-+.-|+|||.+-+. .+.+++.|.|.....+.+ -|....|.|-+-.+..++|+.+||.+
T Consensus 96 el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~w-GEhEiDYiL~~~~~~~~nPnpnEv~e 171 (225)
T KOG0142|consen 96 ELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIW-GEHEIDYILFLVKDVTLNPNPNEVSE 171 (225)
T ss_pred hhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCc-ccceeeEEEEEeccCCCCCChhhhhH
Confidence 2347888999999999999998775 688999999998766433 46667787878788888999999864
No 26
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.20 E-value=1.9e-10 Score=94.54 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=63.7
Q ss_pred CCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEE
Q 020196 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (329)
Q Consensus 229 d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~y 308 (329)
++++++++.||... |.|+ ++||++..||++.+|++||++||+|+..... ..++.+.|......+......+
T Consensus 13 ~~~~~vLl~~~~~~-----~~w~-~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T cd03673 13 DGGIEVLLIHRPRG-----DDWS-LPKGKLEPGETPPEAAVREVEEETGIRAEVG---DPLGTIRYWFSSSGKRVHKTVH 83 (131)
T ss_pred CCCeEEEEEEcCCC-----Cccc-CCCCccCCCCCHHHHHHHHHhhhhCCceEec---ceEEEEEEeccCCCCCcceEEE
Confidence 45578999999654 7886 8899999999999999999999999987654 4677777766532222345566
Q ss_pred EEEEEeCCCccccC-CCCCc
Q 020196 309 CYDLKLPEDFVPMN-QGNCI 327 (329)
Q Consensus 309 vYdLeLp~df~P~p-~DgEV 327 (329)
.|.+....+ .+.+ .++|+
T Consensus 84 ~~~~~~~~~-~~~~~~~~E~ 102 (131)
T cd03673 84 WWLMRALGG-EFTPQPDEEV 102 (131)
T ss_pred EEEEEEcCC-CcccCCCCcE
Confidence 677776543 2332 34554
No 27
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.18 E-value=3.1e-10 Score=94.01 Aligned_cols=77 Identities=25% Similarity=0.361 Sum_probs=58.1
Q ss_pred EEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 020196 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDL 312 (329)
Q Consensus 233 ~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYdL 312 (329)
+++++||+. .++|. ++||+++.||++.+|++||+.||+|+..... ..+|...+.+...+.....+.++|.+
T Consensus 13 ~vLl~~~~~-----~~~w~-lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~f~~ 83 (126)
T cd04688 13 KLLVQKNPD-----ETFYR-PPGGGIEFGESSEEALIREFKEELGLKIEIT---RLLGVVENIFTYNGKPGHEIEFYYLV 83 (126)
T ss_pred EEEEEEeCC-----CCeEE-CCCccccCCCCHHHHHHHHHHHHhCCceecc---eeeEEEEEeeccCCcccEEEEEEEEE
Confidence 899999875 46774 8999999999999999999999999987653 45665544333332223567788999
Q ss_pred EeCCCc
Q 020196 313 KLPEDF 318 (329)
Q Consensus 313 eLp~df 318 (329)
+++.+-
T Consensus 84 ~~~~~~ 89 (126)
T cd04688 84 TLLDES 89 (126)
T ss_pred EeCCCc
Confidence 988653
No 28
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.18 E-value=3.7e-10 Score=97.20 Aligned_cols=94 Identities=19% Similarity=0.170 Sum_probs=65.6
Q ss_pred CceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecC----CceeeE
Q 020196 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDING----FSYKRD 305 (329)
Q Consensus 230 ~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~----~gi~~E 305 (329)
..+++++.||... .+||+|+ ++||+++.|||+.+|++||++||+||..... +...++.+.+.+... ..-...
T Consensus 22 ~~g~vLl~~R~~~--p~~g~w~-lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 97 (144)
T cd03430 22 EDGQYLLGKRTNR--PAQGYWF-VPGGRIRKNETLTEAFERIAKDELGLEFLIS-DAELLGVFEHFYDDNFFGDDFSTHY 97 (144)
T ss_pred CCCeEEEEEccCC--CCCCcEE-CCCceecCCCCHHHHHHHHHHHHHCCCcccc-cceEEEEEEEEeccccccCCCccEE
Confidence 3468999898753 4799998 8999999999999999999999999987653 335667766543321 111234
Q ss_pred EEEEEEEEeCCCccccCCCCCcC
Q 020196 306 VIFCYDLKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 306 v~yvYdLeLp~df~P~p~DgEVe 328 (329)
+.++|.+++..+. +..++.|+.
T Consensus 98 ~~~~~~~~~~~~~-~~~~~~e~~ 119 (144)
T cd03430 98 VVLGYVLKLSSNE-LLLPDEQHS 119 (144)
T ss_pred EEEEEEEEEcCCc-ccCCchhcc
Confidence 5667877776553 233445543
No 29
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.16 E-value=5.2e-10 Score=91.10 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=60.1
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCC--ceeeEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGF--SYKRDVIFC 309 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~--gi~~Ev~yv 309 (329)
+++++.||+.. .++|.|+ ++||++..||++++|++||++||+||..... ..+|.+.+.+..+. .....+.+.
T Consensus 11 ~~vLl~~r~~~--~~~~~w~-~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (122)
T cd04673 11 GRVLLVRRANP--PDAGLWS-FPGGKVELGETLEQAALRELLEETGLEAEVG---RLLTVVDVIERDAAGRVEFHYVLID 84 (122)
T ss_pred CEEEEEEEcCC--CCCCeEE-CCCcccCCCCCHHHHHHHHHHHhhCcEeeec---eeEEEEEEeeccCCCccceEEEEEE
Confidence 47888888753 4789997 8899999999999999999999999987643 46677766654321 123456677
Q ss_pred EEEEeCCC
Q 020196 310 YDLKLPED 317 (329)
Q Consensus 310 YdLeLp~d 317 (329)
|.++...+
T Consensus 85 ~~~~~~~~ 92 (122)
T cd04673 85 FLCRYLGG 92 (122)
T ss_pred EEEEeCCC
Confidence 88877544
No 30
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.16 E-value=2.4e-10 Score=95.85 Aligned_cols=99 Identities=15% Similarity=0.058 Sum_probs=66.0
Q ss_pred eeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEe
Q 020196 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDI 297 (329)
Q Consensus 218 ~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~ 297 (329)
.+|.+..+. ..+++++.||...+ ..+++|+ ++||+++.||++.+|++||++||+||.... +..++.+.+.
T Consensus 3 ~~v~v~~~~---~~~~iLl~~~~~~~-~~~~~w~-~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~---~~~~~~~~~~-- 72 (137)
T cd03424 3 DAVAVLPYD---DDGKVVLVRQYRPP-VGGWLLE-LPAGLIDPGEDPEEAARRELEEETGYEAGD---LEKLGSFYPS-- 72 (137)
T ss_pred CEEEEEEEc---CCCeEEEEEeeecC-CCCEEEE-eCCccCCCCCCHHHHHHHHHHHHHCCCccc---eEEEeeEecC--
Confidence 455554332 33577776664432 4678897 889999999999999999999999998853 3455554332
Q ss_pred cCCceeeEEEEEEEEEeCCCcc-ccCCCCCcC
Q 020196 298 NGFSYKRDVIFCYDLKLPEDFV-PMNQGNCIK 328 (329)
Q Consensus 298 ~~~gi~~Ev~yvYdLeLp~df~-P~p~DgEVe 328 (329)
. +......++|.+....... +.+++.|+.
T Consensus 73 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 102 (137)
T cd03424 73 P--GFSDERIHLFLAEDLSPGEEGLLDEGEDI 102 (137)
T ss_pred C--cccCccEEEEEEEcccccccCCCCCCCee
Confidence 1 1223456677777765432 566777764
No 31
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.16 E-value=1.7e-10 Score=98.65 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=55.1
Q ss_pred ceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeee---EEEEEEe------cCCc
Q 020196 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVG---AVSYTDI------NGFS 301 (329)
Q Consensus 231 ~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G---~IsY~~~------~~~g 301 (329)
++++++.||+. .||.|+ ++|||++.|||+.+|++||++||+||.... .....++ .+.|... ...+
T Consensus 18 ~~~vLl~~r~~----~~~~W~-lPgG~ve~gEs~~~aa~REl~EEtGl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (148)
T PRK09438 18 DLGVLMLQRAD----DPDFWQ-SVTGSLEEGETPAQTAIREVKEETGIDVLA-EQLTLIDCQRSIEYEIFPHWRHRYAPG 91 (148)
T ss_pred CCeEEEEEecC----CCCcEe-CCcccCCCCCCHHHHHHHHHHHHhCcCccc-cceeecccccccccccchhhhhccccc
Confidence 34688878754 379997 789999999999999999999999998732 1122221 2223211 1122
Q ss_pred eeeEEEEEEEEEeCCCc
Q 020196 302 YKRDVIFCYDLKLPEDF 318 (329)
Q Consensus 302 i~~Ev~yvYdLeLp~df 318 (329)
....+.++|.++++.+.
T Consensus 92 ~~~~~~~~f~~~~~~~~ 108 (148)
T PRK09438 92 VTRNTEHWFCLALPHER 108 (148)
T ss_pred cCCceeEEEEEecCCCC
Confidence 33467788988876553
No 32
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.15 E-value=3.6e-10 Score=94.55 Aligned_cols=78 Identities=21% Similarity=0.175 Sum_probs=61.1
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYd 311 (329)
+++++.+|+..+ ++|+|. ++||+++.||++.+|++||++||+||..... ..+|.+.|..... ....+.++|.
T Consensus 12 ~~vLL~~r~~~~--~~~~w~-~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~---~~~~~~~~~~~~~--~~~~~~~~f~ 83 (137)
T cd03427 12 DKVLLLNRKKGP--GWGGWN-GPGGKVEPGETPEECAIRELKEETGLTIDNL---KLVGIIKFPFPGE--EERYGVFVFL 83 (137)
T ss_pred CEEEEEEecCCC--CCCeEe-CCceeCCCCCCHHHHHHHHHHHhhCeEeecc---eEEEEEEEEcCCC--CcEEEEEEEE
Confidence 579999998775 899995 8999999999999999999999999987653 4567777654432 2346677887
Q ss_pred EEeCCC
Q 020196 312 LKLPED 317 (329)
Q Consensus 312 LeLp~d 317 (329)
+....+
T Consensus 84 ~~~~~~ 89 (137)
T cd03427 84 ATEFEG 89 (137)
T ss_pred ECCccc
Confidence 766544
No 33
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.15 E-value=4.3e-10 Score=99.38 Aligned_cols=95 Identities=15% Similarity=0.192 Sum_probs=65.5
Q ss_pred CCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEec---CCc-eee
Q 020196 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDIN---GFS-YKR 304 (329)
Q Consensus 229 d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~---~~g-i~~ 304 (329)
++.+++++.||+. + .++|+|. ++||+++.|||+++|++||++||+||...+. ...++|...+.+.. +.. ...
T Consensus 26 ~~~g~VLL~kR~~-~-~~~g~W~-lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
T PRK15434 26 NSRGEFLLGKRTN-R-PAQGYWF-VPGGRVQKDETLEAAFERLTMAELGLRLPIT-AGQFYGVWQHFYDDNFSGTDFTTH 101 (159)
T ss_pred CCCCEEEEEEccC-C-CCCCcEE-CCceecCCCCCHHHHHHHHHHHHHCCccccc-cceEEEEEEeecccccCCCccceE
Confidence 4456899999974 2 4789998 8999999999999999999999999986542 23455654443321 111 123
Q ss_pred EEEEEEEEEeCCCccccCCCCCcC
Q 020196 305 DVIFCYDLKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 305 Ev~yvYdLeLp~df~P~p~DgEVe 328 (329)
.+.++|.+++..+ .+..+++|+.
T Consensus 102 ~i~~~f~~~~~~g-~~~~~~~E~~ 124 (159)
T PRK15434 102 YVVLGFRLRVAEE-DLLLPDEQHD 124 (159)
T ss_pred EEEEEEEEEecCC-cccCChHHee
Confidence 4567788887654 3444555554
No 34
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.14 E-value=1.1e-09 Score=90.85 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEE
Q 020196 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (329)
Q Consensus 229 d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~y 308 (329)
|..++++++||+.. .++|+|+ ++||++..|||+.+|++||++||+|+..... ..++.+..... +.+. ..+..
T Consensus 11 ~~~~~iLl~~r~~~--~~~~~w~-~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~---~~~~~~~~~~~-~~~~-~~~~~ 82 (129)
T cd04678 11 NPKGKVLLGKRKGS--HGAGTWA-LPGGHLEFGESFEECAAREVLEETGLHIENV---QFLTVTNDVFE-EEGK-HYVTI 82 (129)
T ss_pred CCCCeEEEEeccCC--CCCCeEE-CCcccccCCCCHHHHHHHHHHHHhCCcccce---EEEEEEeEEeC-CCCc-EEEEE
Confidence 34468999999864 5789997 7899999999999999999999999987653 45565543332 2222 34555
Q ss_pred EEEEEeCCC
Q 020196 309 CYDLKLPED 317 (329)
Q Consensus 309 vYdLeLp~d 317 (329)
.|.+.++.+
T Consensus 83 ~~~~~~~~~ 91 (129)
T cd04678 83 FVKAEVDDG 91 (129)
T ss_pred EEEEEeCCC
Confidence 677777654
No 35
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.13 E-value=5.6e-10 Score=91.57 Aligned_cols=53 Identities=30% Similarity=0.384 Sum_probs=47.0
Q ss_pred CceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCccc
Q 020196 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (329)
Q Consensus 230 ~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~ 283 (329)
+++++++.||+..+..++|+|+ ++||+++.||++.+|++||++||+|+.....
T Consensus 11 ~~~~iLl~kr~~~~~~~~g~w~-~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~ 63 (129)
T cd04699 11 DVGRILILKRSKDERTAPGKWE-LPGGKVEEGETFEEALKREVYEETGLTVTPF 63 (129)
T ss_pred CCCcEEEEEecCCCCCCCCcCc-CCccCccCCCCHHHHHHHHHHHhhCcEEEee
Confidence 4358999999988877899997 6899999999999999999999999987653
No 36
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.12 E-value=4.4e-10 Score=91.48 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=62.4
Q ss_pred eEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEec
Q 020196 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDIN 298 (329)
Q Consensus 219 gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~ 298 (329)
+|++-.+ +.++++++.||+.. +.|+ ++||++..|||+++|++||++||+|+.... ....+|.+.+....
T Consensus 2 ~~~~~i~---~~~~~vLL~~r~~~-----~~w~-~PgG~ve~gEt~~~aa~REl~EEtG~~~~~--~~~~~~~~~~~~~~ 70 (120)
T cd04680 2 GARAVVT---DADGRVLLVRHTYG-----PGWY-LPGGGLERGETFAEAARRELLEELGIRLAV--VAELLGVYYHSASG 70 (120)
T ss_pred ceEEEEE---CCCCeEEEEEECCC-----CcEe-CCCCcCCCCCCHHHHHHHHHHHHHCCcccc--ccceEEEEecCCCC
Confidence 4555333 33457888888654 3786 779999999999999999999999998871 23466665554321
Q ss_pred CCceeeEEEEEEEEEeCCCccccCCCCCc
Q 020196 299 GFSYKRDVIFCYDLKLPEDFVPMNQGNCI 327 (329)
Q Consensus 299 ~~gi~~Ev~yvYdLeLp~df~P~p~DgEV 327 (329)
.....++|.+....+.. .+.++|+
T Consensus 71 ----~~~~~~~f~~~~~~~~~-~~~~~E~ 94 (120)
T cd04680 71 ----SWDHVIVFRARADTQPV-IRPSHEI 94 (120)
T ss_pred ----CceEEEEEEecccCCCc-cCCcccE
Confidence 23456778777764421 3445565
No 37
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.11 E-value=4.3e-10 Score=93.15 Aligned_cols=57 Identities=25% Similarity=0.274 Sum_probs=44.8
Q ss_pred eeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCccc
Q 020196 218 YAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (329)
Q Consensus 218 ~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~ 283 (329)
.+|.+-.+ +.++++++++|+.. |.|+ ++||++..|||+.+|++||++||+||.....
T Consensus 8 ~~~~~~v~---~~~~~vLL~~r~~~-----~~w~-~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~ 64 (132)
T cd04677 8 VGAGVILL---NEQGEVLLQKRSDT-----GDWG-LPGGAMELGESLEETARRELKEETGLEVEEL 64 (132)
T ss_pred cceEEEEE---eCCCCEEEEEecCC-----CcEE-CCeeecCCCCCHHHHHHHHHHHHhCCeeeee
Confidence 34555333 23357899999754 7886 6899999999999999999999999987653
No 38
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.11 E-value=5.6e-10 Score=95.72 Aligned_cols=49 Identities=22% Similarity=0.441 Sum_probs=43.0
Q ss_pred CceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCccc
Q 020196 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (329)
Q Consensus 230 ~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~ 283 (329)
.++++++.||+..+ |+|+ ++||++++||++.+||+||++||+||..+..
T Consensus 13 ~~~~vLL~~r~~~~----~~W~-~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~ 61 (147)
T cd03671 13 EDGKVFVGRRIDTP----GAWQ-FPQGGIDEGEDPEQAALRELEEETGLDPDSV 61 (147)
T ss_pred CCCEEEEEEEcCCC----CCEE-CCcCCCCCCcCHHHHHHHHHHHHHCCCcCce
Confidence 34689999998765 8997 8899999999999999999999999987543
No 39
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.11 E-value=1e-09 Score=87.20 Aligned_cols=89 Identities=21% Similarity=0.331 Sum_probs=65.0
Q ss_pred CceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEE
Q 020196 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFC 309 (329)
Q Consensus 230 ~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yv 309 (329)
+++++++.||+.. ++|+|+ ++||++..||++.++++||++||+||.... ....+.+.|.... .......++
T Consensus 10 ~~~~ill~kr~~~---~~~~~~-~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~---~~~~~~~~~~~~~--~~~~~~~~~ 80 (123)
T cd02883 10 EDGRVLLVRRADS---PGGLWE-LPGGGVEPGETLEEAAIREVREETGLDVDV---LRLLGVYEVESPD--EGEHAVVFV 80 (123)
T ss_pred CCCCEEEEEEcCC---CCCeEe-CCcccccCCCCHHHHHHHHHHHhhCcccee---eeEEEEEEeeccC--CCceEEEEE
Confidence 3368999999876 889997 889999999999999999999999998752 2455656665433 123567788
Q ss_pred EEEEeCCCccccCCCCCc
Q 020196 310 YDLKLPEDFVPMNQGNCI 327 (329)
Q Consensus 310 YdLeLp~df~P~p~DgEV 327 (329)
|.+.++.+-...+++.|+
T Consensus 81 ~~~~~~~~~~~~~~~~e~ 98 (123)
T cd02883 81 FLARLVGGEPTLLPPDEI 98 (123)
T ss_pred EEEEeCCCCcCCCCCCcc
Confidence 988887553222444554
No 40
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.08 E-value=1.5e-09 Score=89.97 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=57.6
Q ss_pred EEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecC-Ccee
Q 020196 225 YVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDING-FSYK 303 (329)
Q Consensus 225 yv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~-~gi~ 303 (329)
++.+ .++++++.||.. ++|+|. ++||++..|||+++|++||++||+||..... ..++...|.+... ....
T Consensus 8 ~i~~-~~~~iLL~r~~~----~~~~w~-lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~---~~~~~~~~~~~~~~~~~~ 78 (125)
T cd04696 8 LIYA-PDGRILLVRTTK----WRGLWG-VPGGKVEWGETLEEALKREFREETGLKLRDI---KFAMVQEAIFSEEFHKPA 78 (125)
T ss_pred EEEC-CCCCEEEEEccC----CCCcEe-CCceeccCCCCHHHHHHHHHHHHhCCccccc---ceEEEEEEeccCCCCCcc
Confidence 4443 345789988752 689997 7899999999999999999999999988654 2444444433221 1112
Q ss_pred eEEEEEEEEEeCC
Q 020196 304 RDVIFCYDLKLPE 316 (329)
Q Consensus 304 ~Ev~yvYdLeLp~ 316 (329)
..+.++|.+....
T Consensus 79 ~~~~~~~~~~~~~ 91 (125)
T cd04696 79 HFVLFDFFARTDG 91 (125)
T ss_pred EEEEEEEEEEecC
Confidence 3456677777654
No 41
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.08 E-value=1.6e-09 Score=90.97 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=61.4
Q ss_pred CCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEE
Q 020196 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (329)
Q Consensus 229 d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~y 308 (329)
+++.++++.||+.. ++|.|. ++||+++.|||+.+|++||++||+||....+ ...+.+.+.+.... -...+.+
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~-~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~---~~~~~~~~~~~~~~-~~~~~~~ 82 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWC-HVAGGVEAGETAWQAALRELKEETGISLPEL---YNADYLEQFYEAND-NRILMAP 82 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEE-CCcccccCCCCHHHHHHHHHHHHhCCCcccc---ccccceeeEeecCC-ceEEEEE
Confidence 45678999999754 889996 8999999999999999999999999987643 22232333332221 2235566
Q ss_pred EEEEEeCCCccccCCCCCcC
Q 020196 309 CYDLKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 309 vYdLeLp~df~P~p~DgEVe 328 (329)
+|.+.+...-...++ +|+.
T Consensus 83 ~f~~~~~~~~~~~~~-~E~~ 101 (131)
T cd04695 83 VFVGFVPPHQEVVLN-HEHT 101 (131)
T ss_pred EEEEEecCCCccccC-chhc
Confidence 777777544323333 4554
No 42
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.08 E-value=1.9e-09 Score=86.90 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=62.4
Q ss_pred EEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceee
Q 020196 225 YVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKR 304 (329)
Q Consensus 225 yv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~ 304 (329)
.+..+++++++++||+..+ .++|+|+ ++||++..||++.++++||+.||+|+.... ...+|.+++.+.. ..
T Consensus 6 ~~i~~~~~~~Ll~~r~~~~-~~~g~w~-~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~---~~~~~~~~~~~~~----~~ 76 (124)
T cd03425 6 AIIIDDDGRILIAQRPAGK-HLGGLWE-FPGGKVEPGETPEQALVRELREELGIEVEV---GELLATVEHDYPD----KR 76 (124)
T ss_pred EEEECCCCEEEEEEeCCCC-CCCCeEe-CCCcccCCCCCHHHHHHHHHHHhhCcEEec---cceEEEEEeeCCC----Ce
Confidence 3333454689999998776 7999998 789999999999999999999999998654 3467777765532 13
Q ss_pred EEEEEEEEEeCC
Q 020196 305 DVIFCYDLKLPE 316 (329)
Q Consensus 305 Ev~yvYdLeLp~ 316 (329)
..+++|.+....
T Consensus 77 ~~~~~~~~~~~~ 88 (124)
T cd03425 77 VTLHVFLVELWS 88 (124)
T ss_pred EEEEEEEEeeeC
Confidence 445667666543
No 43
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.07 E-value=2.6e-09 Score=89.17 Aligned_cols=88 Identities=16% Similarity=0.122 Sum_probs=60.1
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYd 311 (329)
+++++-||... .+++|. ++||+++.||++.+|++||++||+|+..... ...+...|...... ...+.++|.
T Consensus 11 ~~vLlv~r~~~---~~~~w~-~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~---~~~~~~~~~~~~~~--~~~~~~~f~ 81 (134)
T cd03675 11 GRFLLVEEETD---GGLVFN-QPAGHLEPGESLIEAAVRETLEETGWHVEPT---ALLGIYQWTAPDSD--TTYLRFAFA 81 (134)
T ss_pred CEEEEEEEccC---CCceEE-CCCccCCCCCCHHHHHHHHHHHHHCcccccc---eEEEEEEeecCCCC--eeEEEEEEE
Confidence 36777787543 567885 8899999999999999999999999987542 45555555433211 223566788
Q ss_pred EEeCCCccccCCCCCcC
Q 020196 312 LKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 312 LeLp~df~P~p~DgEVe 328 (329)
+.+..+....+.+.|+.
T Consensus 82 ~~~~~~~~~~~~~~e~~ 98 (134)
T cd03675 82 AELLEHLPDQPLDSGIV 98 (134)
T ss_pred EEECCCCCCCCCCCCce
Confidence 88876532224455653
No 44
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.07 E-value=1.6e-09 Score=89.72 Aligned_cols=92 Identities=20% Similarity=0.078 Sum_probs=59.2
Q ss_pred EEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceee
Q 020196 225 YVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKR 304 (329)
Q Consensus 225 yv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~ 304 (329)
|..++++.++++.||+. |.|+ ++||++..|||+.+|++||++||+||...... ..+.+.+.......-..
T Consensus 10 ~~~~~~~~~vLl~~~~~------~~w~-~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~---~~~~~~~~~~~~~~~~~ 79 (130)
T cd03428 10 YRRLNNEIEYLLLQASY------GHWD-FPKGHVEPGEDDLEAALRETEEETGITAEQLF---IVLGFKETLNYQVRGKL 79 (130)
T ss_pred EEecCCCceEEEEEccC------CcCc-CCcCCCCCCCCHHHHHHHHHHHHHCCChhhhh---hhccceeEEEccccCcc
Confidence 33334566788888875 6775 67999999999999999999999999887543 22222222211101123
Q ss_pred EEEEEEEEEeCCCccccCCCCCc
Q 020196 305 DVIFCYDLKLPEDFVPMNQGNCI 327 (329)
Q Consensus 305 Ev~yvYdLeLp~df~P~p~DgEV 327 (329)
+..+.|.+.+..+..+.++ +|+
T Consensus 80 ~~~~~f~~~~~~~~~~~~~-~E~ 101 (130)
T cd03428 80 KTVTYFLAELRPDVEVKLS-EEH 101 (130)
T ss_pred eEEEEEEEEeCCCCccccc-cce
Confidence 5556677777644444555 454
No 45
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.06 E-value=2.1e-09 Score=88.84 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=59.6
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYd 311 (329)
+++++.||.. .+.|. ++||+++.||++.+|++||++||+|+.... ..++|.+.+.+...+....++.|+|.
T Consensus 12 ~~vLlv~~~~-----~~~~~-lPGG~ve~gEt~~~aa~REl~EEtGl~~~~---~~~l~~~~~~~~~~~~~~~~~~~~f~ 82 (125)
T cd04689 12 NKVLLARVIG-----QPHYF-LPGGHVEPGETAENALRRELQEELGVAVSD---GRFLGAIENQWHEKGVRTHEINHIFA 82 (125)
T ss_pred CEEEEEEecC-----CCCEE-CCCCcCCCCCCHHHHHHHHHHHHhCceeec---cEEEEEEeeeeccCCceEEEEEEEEE
Confidence 3677777743 24675 779999999999999999999999998764 36778887766555445567888898
Q ss_pred EEeCCC
Q 020196 312 LKLPED 317 (329)
Q Consensus 312 LeLp~d 317 (329)
+.++.+
T Consensus 83 ~~~~~~ 88 (125)
T cd04689 83 VESSWL 88 (125)
T ss_pred EEcccc
Confidence 888653
No 46
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.05 E-value=1.8e-09 Score=92.46 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=57.9
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYd 311 (329)
+++++.||... ..+|.|+ ++||++.+|||+++|++||++||+||..... ..++...+....+ . ..+.++|.
T Consensus 25 ~~vLL~~r~~~--~~~~~w~-lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~---~~~~~~~~~~~~~--~-~~~~~~f~ 95 (142)
T cd04700 25 NDVLLVQEKGG--PKKGLWH-IPSGAVEDGEFPQDAAVREACEETGLRVRPV---KFLGTYLGRFDDG--V-LVLRHVWL 95 (142)
T ss_pred CcEEEEEEcCC--CCCCeEE-CCceecCCCCCHHHHHHHHHHHhhCceeecc---EEEEEEEEEcCCC--c-EEEEEEEE
Confidence 35666566433 3589996 7899999999999999999999999987653 4666554433322 2 24456677
Q ss_pred EEeCC-CccccCCCCCcC
Q 020196 312 LKLPE-DFVPMNQGNCIK 328 (329)
Q Consensus 312 LeLp~-df~P~p~DgEVe 328 (329)
+.... ...|... +|+.
T Consensus 96 ~~~~~~~~~~~~~-~E~~ 112 (142)
T cd04700 96 AEPEGQTLAPKFT-DEIA 112 (142)
T ss_pred EEecCCccccCCC-CCEE
Confidence 77643 3344433 4553
No 47
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.03 E-value=4.7e-09 Score=85.87 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=52.2
Q ss_pred ECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEe
Q 020196 228 KDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDI 297 (329)
Q Consensus 228 ~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~ 297 (329)
.+++++++++||+.. ..++|+|+ ++||+++.||++.++++||+.||+|+.... ...++.+.+.+.
T Consensus 12 ~~~~~~vll~rR~~~-~~~~g~w~-~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~---~~~~~~~~~~~~ 76 (129)
T PRK10776 12 RNPNNEIFITRRAAD-AHMAGKWE-FPGGKIEAGETPEQALIRELQEEVGITVQH---ATLFEKLEYEFP 76 (129)
T ss_pred ECCCCEEEEEEecCC-CCCCCeEE-CCceecCCCCCHHHHHHHHHHHHHCCceec---ceEEEEEEeeCC
Confidence 355568999999865 46899997 899999999999999999999999997643 234666666553
No 48
>PLN02709 nudix hydrolase
Probab=99.02 E-value=1.9e-09 Score=100.40 Aligned_cols=92 Identities=18% Similarity=0.156 Sum_probs=70.7
Q ss_pred CceEEEEEecCCCCCCCCCCeeccccCCCCCCC-CHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEE
Q 020196 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGI-ACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (329)
Q Consensus 230 ~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GE-s~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~y 308 (329)
++.++++.+|+.....+||.| .++||++++|+ ++.+||+||++||+||+.+.+ ..+|.+..... ..++ .++
T Consensus 49 ~~~~vLl~~Rs~~l~~h~Gqi-afPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v---~vlg~L~~~~t-~sg~---~V~ 120 (222)
T PLN02709 49 NELRVILTKRSSTLSSHPGEV-ALPGGKRDEEDKDDIATALREAREEIGLDPSLV---TIISVLEPFVN-KKGM---SVA 120 (222)
T ss_pred CceEEEEEEcCCCCCCCCCCc-cCCCcccCCCCCCHHHHHHHHHHHHHCCCchhe---EEeeecCCeEC-CCCC---EEE
Confidence 567899999999888899999 49999999975 789999999999999988653 46676654332 2222 356
Q ss_pred EEEEEeCC--CccccCCCCCcCC
Q 020196 309 CYDLKLPE--DFVPMNQGNCIKA 329 (329)
Q Consensus 309 vYdLeLp~--df~P~p~DgEVea 329 (329)
.|...++. ++.++++.+||++
T Consensus 121 P~V~~~~~~~~~~~~~np~EV~~ 143 (222)
T PLN02709 121 PVIGFLHDKKAFKPLPNPAEVEE 143 (222)
T ss_pred EEEEEecCCCCccccCChhhhhe
Confidence 66666653 6677788899974
No 49
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.98 E-value=6.5e-09 Score=86.18 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=41.6
Q ss_pred CCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcc
Q 020196 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (329)
Q Consensus 229 d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~ 282 (329)
++++++++.||... ++|+|. ++||+++.|||+.+|++||++||+||....
T Consensus 11 ~~~~~vLl~~r~~~---~~~~w~-~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~ 60 (127)
T cd04670 11 NEKNEVLVVQERNK---TPNGWK-LPGGLVDPGEDIFDGAVREVLEETGIDTEF 60 (127)
T ss_pred cCCCeEEEEEccCC---CCCcEE-CCCccCCCCCCHHHHHHHHHHHHHCCCcce
Confidence 34457777776443 889997 689999999999999999999999998764
No 50
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.98 E-value=9e-09 Score=85.58 Aligned_cols=79 Identities=22% Similarity=0.207 Sum_probs=56.7
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEec----CCceeeEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDIN----GFSYKRDVI 307 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~----~~gi~~Ev~ 307 (329)
+++++.||... .++.|+ ++||++..|||+++|++||+.||+|+..... ...+...|.... ...-...+.
T Consensus 12 ~~vLl~~r~~~---~~~~~~-lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~---~~~~~~~~~~~~~~~~~~~~~~~i~ 84 (128)
T cd04687 12 DKILLIKHHDD---GGVWYI-LPGGGQEPGETLEDAAHRECKEEIGIDVEIG---PLLFVREYIGHNPTSELPGHFHQVE 84 (128)
T ss_pred CEEEEEEEEcC---CCCeEE-CCCcccCCCCCHHHHHHHHHHHHHCCccccC---cEEEEEEEeccCccccCCCceeEEE
Confidence 47888888643 246674 8899999999999999999999999998753 233444554221 112235677
Q ss_pred EEEEEEeCCC
Q 020196 308 FCYDLKLPED 317 (329)
Q Consensus 308 yvYdLeLp~d 317 (329)
+.|.++++.+
T Consensus 85 ~~f~~~~~~~ 94 (128)
T cd04687 85 LMFECKIKSG 94 (128)
T ss_pred EEEEEEECCC
Confidence 8899998765
No 51
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=98.98 E-value=6.9e-09 Score=94.14 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=67.0
Q ss_pred CceEEEEEecCCCCCCCCCCeeccccCCCCCC-CCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEE
Q 020196 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHG-IACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (329)
Q Consensus 230 ~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~G-Es~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~y 308 (329)
++.++++.||+..-+.++|.|. ++||++++| +++++||+||++||+|+..+. ...+|.+....... ++ ...
T Consensus 42 ~~~~vLl~~R~~~~r~~~G~~~-~PGG~~e~~de~~~~tA~REl~EEtGl~~~~---~~~lg~l~~~~~~~-~~---~~~ 113 (190)
T PRK10707 42 PQPTLLLTQRSIHLRKHAGQVA-FPGGAVDPTDASLIATALREAQEEVAIPPSA---VEVIGVLPPVDSST-GY---QVT 113 (190)
T ss_pred CCCEEEEEEeCCcccCCCCcEE-cCCcccCCCcccHHHHHHHHHHHHHCCCccc---eEEEEEeeeeeccC-Cc---EEE
Confidence 3458999999987777899995 999999986 689999999999999998754 46778766433222 22 234
Q ss_pred EEEEEeCCCccccCCCCCcC
Q 020196 309 CYDLKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 309 vYdLeLp~df~P~p~DgEVe 328 (329)
.|.+.++.+..+.++++||+
T Consensus 114 ~~v~~~~~~~~~~~d~~Ev~ 133 (190)
T PRK10707 114 PVVGIIPPDLPYRANEDEVA 133 (190)
T ss_pred EEEEEECCCCCCCCChhhhh
Confidence 45555666655667778876
No 52
>PLN02325 nudix hydrolase
Probab=98.97 E-value=1.1e-08 Score=88.17 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=56.9
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYd 311 (329)
++|+++||+... .-|+|. ++||+++.||++.+|++||++||+||.+... ..++.+.+...........+.+.|.
T Consensus 20 ~~vLL~rr~~~~--~~g~W~-lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~---~~l~~~~~~~~~~~~~~~~i~~~f~ 93 (144)
T PLN02325 20 NSVLLGRRRSSI--GDSTFA-LPGGHLEFGESFEECAAREVKEETGLEIEKI---ELLTVTNNVFLEEPKPSHYVTVFMR 93 (144)
T ss_pred CEEEEEEecCCC--CCCeEE-CCceeCCCCCCHHHHHHHHHHHHHCCCCcce---EEEEEecceeecCCCCcEEEEEEEE
Confidence 489999997542 237785 8899999999999999999999999987653 5667666544332222234566677
Q ss_pred EEeCC
Q 020196 312 LKLPE 316 (329)
Q Consensus 312 LeLp~ 316 (329)
+++.+
T Consensus 94 ~~~~~ 98 (144)
T PLN02325 94 AVLAD 98 (144)
T ss_pred EEECC
Confidence 77643
No 53
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.96 E-value=1e-08 Score=87.53 Aligned_cols=91 Identities=18% Similarity=0.080 Sum_probs=61.6
Q ss_pred eEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCC-cccCCceeeeEEEEEEe
Q 020196 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPR-SISNRARPVGAVSYTDI 297 (329)
Q Consensus 219 gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~-~~~~~~~~~G~IsY~~~ 297 (329)
++++..+. .+++++++||...+..+++.|+ ++||+++.||++.+|++||+.||+|+.. ++. ..+....|.+.
T Consensus 2 ~~~~~i~~---~~g~vLl~r~~~~~~~~~~~w~-~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~---~~~~~~~~~f~ 74 (133)
T cd04685 2 AARVVLLD---PDDRVLLLRGDDPDSPGPDWWF-TPGGGVEPGESPEQAARRELREETGITVADLG---PPVWRRDAAFT 74 (133)
T ss_pred eEEEEEEc---CCCeEEEEEEeCCCCCCCCEEE-CCcCCCCCCCCHHHHHHHHHHHHHCCcccccc---ceEEEEEEEEE
Confidence 45564443 3458999998876556788997 7999999999999999999999999988 432 23343343222
Q ss_pred cCCceeeEEEEEEEEEeCC
Q 020196 298 NGFSYKRDVIFCYDLKLPE 316 (329)
Q Consensus 298 ~~~gi~~Ev~yvYdLeLp~ 316 (329)
....-.....+.|.++++.
T Consensus 75 ~~~~~~~~~~~~f~~~~~~ 93 (133)
T cd04685 75 FLGVDGRQEERFFLARTPR 93 (133)
T ss_pred ecCccceeeEEEEEEEcCC
Confidence 1111112345667777764
No 54
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.95 E-value=6.7e-09 Score=84.60 Aligned_cols=48 Identities=25% Similarity=0.479 Sum_probs=41.8
Q ss_pred CCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcc
Q 020196 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (329)
Q Consensus 229 d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~ 282 (329)
++++++++.||+.. |+|+ ++||++..||++.+|++||++||+|+....
T Consensus 11 ~~~~~vLl~~r~~~-----~~w~-lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~ 58 (129)
T cd04676 11 DDEGRVLLIRRSDN-----GLWA-LPGGAVEPGESPADTAVREVREETGLDVEV 58 (129)
T ss_pred CCCCeEEEEEecCC-----CcEE-CCeeccCCCCCHHHHHHHHHHHHhCceeEe
Confidence 34468999999764 8997 789999999999999999999999998764
No 55
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=98.94 E-value=6.2e-09 Score=87.85 Aligned_cols=85 Identities=19% Similarity=0.303 Sum_probs=59.5
Q ss_pred CceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEE
Q 020196 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFC 309 (329)
Q Consensus 230 ~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yv 309 (329)
+++++++.||+.. -+|.|+ ++||+++.||++++|++||++||+||.... ...+|...|... ..+.+.
T Consensus 10 ~~~~vLL~~r~~~---~~~~w~-lPgG~ie~gEt~~~aA~REl~EEtGl~~~~---~~~l~~~~~~~~------~~~~~~ 76 (131)
T cd03429 10 GGDRILLARQPRF---PPGMYS-LLAGFVEPGESLEEAVRREVKEEVGIRVKN---IRYVGSQPWPFP------SSLMLG 76 (131)
T ss_pred CCCEEEEEEecCC---CCCcCc-CCcccccCCCCHHHHHhhhhhhccCceeee---eEEEeecCCCCC------ceEEEE
Confidence 4468888888642 268886 789999999999999999999999998754 345554433221 345566
Q ss_pred EEEEeCCCccccCCCCCcC
Q 020196 310 YDLKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 310 YdLeLp~df~P~p~DgEVe 328 (329)
|.+.+..+ .+.+++.|+.
T Consensus 77 f~~~~~~~-~~~~~~~E~~ 94 (131)
T cd03429 77 FTAEADSG-EIVVDDDELE 94 (131)
T ss_pred EEEEEcCC-cccCCchhhh
Confidence 77777643 3445555654
No 56
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=98.94 E-value=7.2e-09 Score=87.96 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=37.9
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcc
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~ 282 (329)
+++++.||+. .|.| .++||++++||++++|++||++||+||.+..
T Consensus 15 ~~vLLv~r~~-----~~~w-~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~ 59 (138)
T cd03674 15 GKVLLTHHRK-----LGSW-LQPGGHIDPDESLLEAALRELREETGIELLG 59 (138)
T ss_pred CeEEEEEEcC-----CCcE-ECCceecCCCCCHHHHHHHHHHHHHCCCccc
Confidence 6778878764 3677 4689999999999999999999999997653
No 57
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.91 E-value=2.9e-08 Score=81.64 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=58.6
Q ss_pred CCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEE
Q 020196 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (329)
Q Consensus 229 d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~y 308 (329)
+++++++++||... ..+.|+|+ ++||+++.||++.++++||+.||+|+..... ..++.+.+.+.. ....++
T Consensus 13 ~~~~~vLl~~R~~~-~~~~g~w~-~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~---~~~~~~~h~~~~----~~~~~~ 83 (128)
T TIGR00586 13 NENGEIIITRRADG-HMFAKLLE-FPGGKEEGGETPEQAVVRELEEEIGIPQHFS---EFEKLEYEFYPR----HITLWF 83 (128)
T ss_pred CCCCEEEEEEEeCC-CCCCCeEE-CCCcccCCCCCHHHHHHHHHHHHHCCcceee---eEEEEEEEECCC----cEEEEE
Confidence 45558999999754 57899998 8899999999999999999999999986542 345555443321 124466
Q ss_pred EEEEEeCC
Q 020196 309 CYDLKLPE 316 (329)
Q Consensus 309 vYdLeLp~ 316 (329)
+|.+....
T Consensus 84 ~~~~~~~~ 91 (128)
T TIGR00586 84 WLLERWEG 91 (128)
T ss_pred EEEEEEcC
Confidence 77777654
No 58
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.91 E-value=2.1e-08 Score=84.23 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=56.0
Q ss_pred CCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecC-CceeeEEE
Q 020196 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDING-FSYKRDVI 307 (329)
Q Consensus 229 d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~-~gi~~Ev~ 307 (329)
+++.++++-+|... |.|+ ++||+++.|||+.+|++||++||+||..... ..++|.+.|..... .... ...
T Consensus 12 ~~~~~vLLv~~~~~-----~~w~-~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~--~~~l~~~~~~~~~~~~~~~-~~~ 82 (122)
T cd04666 12 GGEVEVLLVTSRRT-----GRWI-VPKGGPEKDESPAEAAAREAWEEAGVRGKIG--KRPLGRFEYRKRSKNRPPR-CEV 82 (122)
T ss_pred CCceEEEEEEecCC-----CeEE-CCCCCcCCCCCHHHHHHHHHHHHhCCccccc--ceEEEEEEeeecCCCCCce-EEE
Confidence 34456666666432 7886 8899999999999999999999999986543 36788888766532 1222 234
Q ss_pred EEEEEEeCCC
Q 020196 308 FCYDLKLPED 317 (329)
Q Consensus 308 yvYdLeLp~d 317 (329)
++|.+.....
T Consensus 83 ~~f~~~~~~~ 92 (122)
T cd04666 83 AVFPLEVTEE 92 (122)
T ss_pred EEEEEEEecc
Confidence 5577776543
No 59
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.91 E-value=1.4e-08 Score=82.61 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=54.6
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYd 311 (329)
+++++.||.. .|+|. ++||++..||++++|++||++||+|+.... ..+..++.+.+......+ .....++|.
T Consensus 12 ~~vLl~~r~~-----~~~w~-~PgG~ve~~Es~~~aa~REl~EEtGl~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~f~ 83 (118)
T cd04690 12 GRVLLVRKRG-----TDVFY-LPGGKIEAGETPLQALIRELSEELGLDLDP-DSLEYLGTFRAPAANEPG-VDVRATVYV 83 (118)
T ss_pred CeEEEEEECC-----CCcEE-CCCCccCCCCCHHHHHHHHHHHHHCCccCh-hheEEEEEEecccccCCC-cEEEEEEEE
Confidence 3677767653 35674 789999999999999999999999998754 225667766654322222 345677788
Q ss_pred EEeCC
Q 020196 312 LKLPE 316 (329)
Q Consensus 312 LeLp~ 316 (329)
+.+..
T Consensus 84 ~~~~~ 88 (118)
T cd04690 84 AELTG 88 (118)
T ss_pred EcccC
Confidence 87765
No 60
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.88 E-value=2.3e-08 Score=82.73 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=54.2
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEE-EecCCceeeEEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYT-DINGFSYKRDVIFCY 310 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~-~~~~~gi~~Ev~yvY 310 (329)
+++++.||.. .|+|+ ++||++..||++.+|++||++||+|+..... ..+|...+. +.........+.+.|
T Consensus 13 ~~vLL~~~~~-----~~~w~-~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~f 83 (123)
T cd04672 13 GKILLVREKS-----DGLWS-LPGGWADVGLSPAENVVKEVKEETGLDVKVR---KLAAVDDRNKHHPPPQPYQVYKLFF 83 (123)
T ss_pred CEEEEEEEcC-----CCcEe-CCccccCCCCCHHHHHHHHHHHHhCCeeeEe---EEEEEeccccccCCCCceEEEEEEE
Confidence 3666666643 58885 7799999999999999999999999977432 333433221 111112234556678
Q ss_pred EEEeCCCccccCCCCCc
Q 020196 311 DLKLPEDFVPMNQGNCI 327 (329)
Q Consensus 311 dLeLp~df~P~p~DgEV 327 (329)
.+.+... .+.+. +|+
T Consensus 84 ~~~~~~~-~~~~~-~E~ 98 (123)
T cd04672 84 LCEILGG-EFKPN-IET 98 (123)
T ss_pred EEEecCC-cccCC-Cce
Confidence 8887544 34433 344
No 61
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=98.87 E-value=4.5e-08 Score=81.68 Aligned_cols=59 Identities=22% Similarity=0.372 Sum_probs=48.3
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYT 295 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~ 295 (329)
+++++.||...+ .++|+|. ++||+++.||++.+|++||+.||+|+..... .+++.+.+.
T Consensus 15 ~~vLL~~R~~~~-~~~g~w~-~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~---~~~~~~~~~ 73 (135)
T PRK10546 15 GKILLAQRPAHS-DQAGLWE-FAGGKVEPGESQPQALIRELREELGIEATVG---EYVASHQRE 73 (135)
T ss_pred CEEEEEEccCCC-CCCCcEE-CCcccCCCCCCHHHHHHHHHHHHHCCccccc---eeEEEEEEe
Confidence 479999997654 5899996 8899999999999999999999999987653 345655554
No 62
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.87 E-value=3.6e-08 Score=84.56 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=44.9
Q ss_pred EEEECCceEEEEEecCCC--CCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCc
Q 020196 225 YVEKDGQKFLWIGKRSQV--KSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRS 281 (329)
Q Consensus 225 yv~~d~~~~lwI~rRS~~--K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~ 281 (329)
|..++++.++++.+|... +...+|.|+ ++||++..||++.+|++||++||+|+...
T Consensus 8 ~~~~~~~~~vlL~~~~~~~~~~~~~~~W~-lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 8 YRFRDGRIEVLLVHPGGPFWANKDLGAWS-IPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred EEEcCCcEEEEEEEccCccccCCCCCEEE-CCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 333355678888887543 345679996 78999999999999999999999999865
No 63
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=98.87 E-value=1.6e-08 Score=88.34 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=40.8
Q ss_pred ceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcc
Q 020196 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (329)
Q Consensus 231 ~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~ 282 (329)
+++++++||+. .||.|+ ++||++..||++.+|+.||++||+|+....
T Consensus 19 ~g~vLL~~r~~----~~~~w~-~P~G~~~~gE~~~~aa~REl~EEtG~~~~~ 65 (156)
T PRK00714 19 QGQVFWGRRIG----QGHSWQ-FPQGGIDPGETPEQAMYRELYEEVGLRPED 65 (156)
T ss_pred CCEEEEEEEcC----CCCeEE-CCcccCCCCcCHHHHHHHHHHHHhCCCccc
Confidence 45899999974 268997 679999999999999999999999998754
No 64
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=98.84 E-value=1.5e-08 Score=96.02 Aligned_cols=83 Identities=14% Similarity=0.208 Sum_probs=61.2
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYd 311 (329)
.+|++.||...+ +|+|. ++||+++.|||+++|++||++||+||.... ..++|...|.+. ..+++.|.
T Consensus 143 ~~iLL~rr~~~~---~g~ws-lPgG~vE~GEs~eeAa~REv~EEtGl~v~~---~~~~~s~~~~~p------~~lm~~f~ 209 (256)
T PRK00241 143 DEILLARHPRHR---NGVYT-VLAGFVEVGETLEQCVAREVMEESGIKVKN---LRYVGSQPWPFP------HSLMLGFH 209 (256)
T ss_pred CEEEEEEccCCC---CCcEe-CcccCCCCCCCHHHHhhhhhhhccCceeee---eEEEEeEeecCC------CeEEEEEE
Confidence 589998886542 78896 889999999999999999999999997653 356665544222 34567787
Q ss_pred EEeCCCccccCCCCCcC
Q 020196 312 LKLPEDFVPMNQGNCIK 328 (329)
Q Consensus 312 LeLp~df~P~p~DgEVe 328 (329)
+++..+ .+.++++|++
T Consensus 210 a~~~~~-~~~~~~~Ei~ 225 (256)
T PRK00241 210 ADYDSG-EIVFDPKEIA 225 (256)
T ss_pred EEecCC-cccCCcccEE
Confidence 877543 3555666764
No 65
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.83 E-value=3.5e-08 Score=82.74 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=55.5
Q ss_pred CCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEE
Q 020196 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (329)
Q Consensus 229 d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~y 308 (329)
+.++++++.||.+ ..++|+|. ++||+++.||++.+|++||++||+|+.....+ .++.. .. . ...+.+
T Consensus 9 ~~~~~vLl~~r~~--~~~~~~w~-lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~---~~~~~---~~-~---~~~~~~ 75 (123)
T cd04671 9 NNQGEVLLIQEAK--RSCRGKWY-LPAGRMEPGETIEEAVKREVKEETGLDCEPTT---LLSVE---EQ-G---GSWFRF 75 (123)
T ss_pred cCCCEEEEEEecC--CCCCCeEE-CceeecCCCCCHHHHHHHHHHHHHCCeeecce---EEEEE---cc-C---CeEEEE
Confidence 3446899999874 34689997 88999999999999999999999999886542 33321 11 1 124567
Q ss_pred EEEEEeCCC
Q 020196 309 CYDLKLPED 317 (329)
Q Consensus 309 vYdLeLp~d 317 (329)
+|.++...+
T Consensus 76 ~f~a~~~~g 84 (123)
T cd04671 76 VFTGNITGG 84 (123)
T ss_pred EEEEEEeCC
Confidence 787877653
No 66
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.75 E-value=4e-08 Score=81.62 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=40.4
Q ss_pred ceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcc
Q 020196 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (329)
Q Consensus 231 ~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~ 282 (329)
++++++.||.... .++|. ++||+++.|||+.+|++||++||+|+...+
T Consensus 11 ~~~vLL~~r~~~~---~~~w~-lPGG~ve~gEs~~~a~~REl~EEtGl~~~~ 58 (121)
T cd04669 11 QGEILLIRRIKPG---KTYYV-FPGGGIEEGETPEEAAKREALEELGLDVRV 58 (121)
T ss_pred CCEEEEEEEecCC---CCcEE-CCceeccCCCCHHHHHHHHHHHhhCeeEee
Confidence 3578888886532 47785 899999999999999999999999998855
No 67
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=98.73 E-value=1.1e-07 Score=82.65 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=45.4
Q ss_pred EEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCccc
Q 020196 222 LNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (329)
Q Consensus 222 lngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~ 283 (329)
+.+.+..++ +|++-||+. ..++|+| .++||+++.|||+++|+.||++||+||....+
T Consensus 13 v~~~i~~~~--~iLLvrR~~--~p~~g~W-alPGG~ve~GEt~eeaa~REl~EETgL~~~~~ 69 (145)
T COG1051 13 VGALIVRNG--RILLVRRAN--EPGAGYW-ALPGGFVEIGETLEEAARRELKEETGLRVRVL 69 (145)
T ss_pred eeEEEEeCC--EEEEEEecC--CCCCCcE-eCCCccCCCCCCHHHHHHHHHHHHhCCcccce
Confidence 334444333 788888865 3578999 59999999999999999999999999996543
No 68
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.71 E-value=2e-07 Score=78.61 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=52.7
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCC-cccCCceeeeEEEEEEe--cC-CceeeEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPR-SISNRARPVGAVSYTDI--NG-FSYKRDVI 307 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~-~~~~~~~~~G~IsY~~~--~~-~gi~~Ev~ 307 (329)
++|++.||.. .|.|+ ++||+++.||++.+|++||++||+|+.. .. ...+|.+...+. .. ......+.
T Consensus 11 ~~vLLv~~~~-----~~~w~-lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T cd04686 11 DKILLLYTKR-----YGDYK-FPGGGVEKGEDHIEGLIRELQEETGATNIRV---IEKFGTYTERRPWRKPDADIFHMIS 81 (131)
T ss_pred CEEEEEEEcC-----CCcEE-CccccCCCCCCHHHHHHHHHHHHHCCccccc---ceEEEEEEeeccccCCCCceeEEEE
Confidence 3677766643 25685 8999999999999999999999999975 33 245666643221 11 11334556
Q ss_pred EEEEEEeCCC
Q 020196 308 FCYDLKLPED 317 (329)
Q Consensus 308 yvYdLeLp~d 317 (329)
+.|.+.+...
T Consensus 82 ~~~~~~~~~~ 91 (131)
T cd04686 82 YYYLCEVDAE 91 (131)
T ss_pred EEEEEEEcCC
Confidence 7788888654
No 69
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=98.70 E-value=8.5e-08 Score=81.16 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=53.9
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccC-CceeeeEEEEEEecCC---ceeeEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISN-RARPVGAVSYTDINGF---SYKRDVI 307 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~-~~~~~G~IsY~~~~~~---gi~~Ev~ 307 (329)
.++++-||+.. ..|+|. +++|+++.|||+.+||+||++||+|+....-- ...+++.+.|.+..+. .......
T Consensus 13 ~~~Llvk~~~~---~~g~W~-fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (132)
T cd04661 13 TLVLLVQQKVG---SQNHWI-LPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKV 88 (132)
T ss_pred cEEEEEEeecC---CCCeeE-CCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEE
Confidence 46666677543 257885 88999999999999999999999999765310 0123444555443221 1112457
Q ss_pred EEEEEEeCCC
Q 020196 308 FCYDLKLPED 317 (329)
Q Consensus 308 yvYdLeLp~d 317 (329)
+.|.+.+-.+
T Consensus 89 ~~f~~~~~~g 98 (132)
T cd04661 89 FFFKARYMSG 98 (132)
T ss_pred EEEEEEEecC
Confidence 7888887554
No 70
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=98.67 E-value=2.8e-07 Score=77.19 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=53.9
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYd 311 (329)
+++++.||... ..+|.|+ ++||+++.||++++|++||++||+|+..... ..++.. .. .. . ..+.+.|.
T Consensus 24 ~~vLL~kr~~~--~~~g~w~-lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~---~~~~~~--~~--~~-~-~~~~~~f~ 91 (130)
T cd04511 24 GKVLLCRRAIE--PRHGFWT-LPAGFMENGETTEQGALRETWEEAGARVEID---GLYAVY--SV--PH-I-SQVYMFYR 91 (130)
T ss_pred CEEEEEEecCC--CCCCeEE-CCcccccCCCCHHHHHHHHHHHHhCCEEEee---eEEEEE--ec--CC-c-eEEEEEEE
Confidence 47888888653 3689996 8899999999999999999999999987542 233322 21 11 1 34567788
Q ss_pred EEeCCC
Q 020196 312 LKLPED 317 (329)
Q Consensus 312 LeLp~d 317 (329)
+++...
T Consensus 92 ~~~~~~ 97 (130)
T cd04511 92 ARLLDL 97 (130)
T ss_pred EEEcCC
Confidence 888643
No 71
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.67 E-value=1.9e-07 Score=76.05 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=49.0
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYd 311 (329)
.++++.||.. |+|. ++||++..||++.+|+.||+.||+|+.... +..++.+ ... ....++|.
T Consensus 11 ~~vLlv~r~~------~~w~-~PgG~ve~gE~~~~aa~REl~EEtGl~~~~---~~~~~~~----~~~----~~~~~~f~ 72 (112)
T cd04667 11 GRVLLVRKSG------SRWA-LPGGKIEPGETPLQAARRELQEETGLQGLD---LLYLFHV----DGG----STRHHVFV 72 (112)
T ss_pred CEEEEEEcCC------CcEe-CCCCcCCCCCCHHHHHHHHHHHHhCCcccc---eEEEEEE----eCC----CEEEEEEE
Confidence 4788888863 7785 779999999999999999999999997643 2343332 111 23456677
Q ss_pred EEeCCC
Q 020196 312 LKLPED 317 (329)
Q Consensus 312 LeLp~d 317 (329)
+.++.+
T Consensus 73 ~~~~~~ 78 (112)
T cd04667 73 ASVPPS 78 (112)
T ss_pred EEcCCc
Confidence 766654
No 72
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=98.65 E-value=1.8e-07 Score=81.00 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=37.8
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcc
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~ 282 (329)
+++++.||.. ++.|+ ++||+++.|||+.+||+||++||+||....
T Consensus 14 ~~vLLvr~~~-----~~~W~-lPGG~ve~gEs~~~AA~REl~EETGl~v~~ 58 (145)
T cd03672 14 DKVLLVKGWK-----SKSWS-FPKGKINKDEDDHDCAIREVYEETGFDISK 58 (145)
T ss_pred CEEEEEEecC-----CCCEE-CCCccCCCCcCHHHHHHHHHHHhhCcccee
Confidence 4788877742 35786 889999999999999999999999998654
No 73
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.58 E-value=3.6e-07 Score=73.33 Aligned_cols=46 Identities=26% Similarity=0.377 Sum_probs=40.4
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHH-HHHHHHHhhhCCCCcc
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGE-NIIKECEEEAGIPRSI 282 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~e-a~iRE~~EEaGL~~~~ 282 (329)
.++++.+|...+ |.|+ ++||+++.||++.+ |++||++||+||....
T Consensus 24 ~~vl~~~~~~~~----~~~~-~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~ 70 (161)
T COG0494 24 GEVLLAQRRDDG----GLWE-LPGGKVEPGEELPEEAAARELEEETGLRVKD 70 (161)
T ss_pred CEEeEEEccccC----Ccee-cCCcccCCCCchHHHHHHHHHHHHhCCeeee
Confidence 689999988775 6775 88999999999988 9999999999998874
No 74
>PRK08999 hypothetical protein; Provisional
Probab=98.58 E-value=7.6e-07 Score=85.15 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=59.8
Q ss_pred eEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCC
Q 020196 221 PLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGF 300 (329)
Q Consensus 221 Hlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~ 300 (329)
++...+..+.++++|+.||... ..++|+|+ ++||+++.||++.++++||+.||+|+..... ..++.+.+.+...
T Consensus 6 ~~~~~vi~~~~~~vLL~kR~~~-~~~~g~w~-~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~---~~l~~~~h~~~~~- 79 (312)
T PRK08999 6 HVAAGVIRDADGRILLARRPEG-KHQGGLWE-FPGGKVEPGETVEQALARELQEELGIEVTAA---RPLITVRHDYPDK- 79 (312)
T ss_pred EEEEEEEECCCCeEEEEEecCC-CCCCCeEE-CCccCCCCCCCHHHHHHHHHHHHhCCceecc---eeEEEEEEEcCCC-
Confidence 3333333344468999999765 46999997 8899999999999999999999999986542 3455555433221
Q ss_pred ceeeEEEEEEEEEeC
Q 020196 301 SYKRDVIFCYDLKLP 315 (329)
Q Consensus 301 gi~~Ev~yvYdLeLp 315 (329)
...+++|.+..+
T Consensus 80 ---~~~i~~y~~~~~ 91 (312)
T PRK08999 80 ---RVRLDVRRVTAW 91 (312)
T ss_pred ---eEEEEEEEEEEe
Confidence 123566766554
No 75
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.57 E-value=6.8e-07 Score=87.68 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=41.2
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcc
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~ 282 (329)
+++++.||+.. ..+|+|. ++||+++.|||+++|++||++||+||.+..
T Consensus 214 g~VLLvrR~~~--p~~g~W~-lPGG~ve~gEt~~~Aa~REl~EETGl~v~~ 261 (340)
T PRK05379 214 GHVLLVRRRAE--PGKGLWA-LPGGFLEQDETLLDACLRELREETGLKLPE 261 (340)
T ss_pred CEEEEEEecCC--CCCCeEE-CCcccCCCCCCHHHHHHHHHHHHHCCcccc
Confidence 37888888753 3589996 899999999999999999999999997654
No 76
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.48 E-value=1.4e-06 Score=73.39 Aligned_cols=71 Identities=17% Similarity=0.084 Sum_probs=49.0
Q ss_pred EEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEEE
Q 020196 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDL 312 (329)
Q Consensus 233 ~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYdL 312 (329)
++++.+|.. +.|+ ++||+++.||++++|++||++||+|+.... ..++|.+.+... . .....++|.+
T Consensus 12 ~vLl~~~~~------~~w~-lPgG~ve~gE~~~~aa~REl~EE~G~~~~~---~~~l~~~~~~~~--~--~~~~~~~y~a 77 (118)
T cd04665 12 GLLLVRHKD------RGWE-FPGGHVEPGETIEEAARREVWEETGAELGS---LTLVGYYQVDLF--E--SGFETLVYPA 77 (118)
T ss_pred EEEEEEeCC------CEEE-CCccccCCCCCHHHHHHHHHHHHHCCccCc---eEEEEEEEecCC--C--CcEEEEEEEE
Confidence 555555532 4576 789999999999999999999999998843 467776544321 1 2344566766
Q ss_pred EeCCC
Q 020196 313 KLPED 317 (329)
Q Consensus 313 eLp~d 317 (329)
.+...
T Consensus 78 ~~~~~ 82 (118)
T cd04665 78 VSAQL 82 (118)
T ss_pred EEEec
Confidence 66543
No 77
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.45 E-value=5.7e-07 Score=84.23 Aligned_cols=105 Identities=21% Similarity=0.165 Sum_probs=76.0
Q ss_pred eEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCC-CHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEE-
Q 020196 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGI-ACGENIIKECEEEAGIPRSISNRARPVGAVSYTD- 296 (329)
Q Consensus 219 gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GE-s~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~- 296 (329)
+|-+-.+...+++.+++++|||.+-++++|.. .+.||..+..+ +-..||.||+.||.||+.+.+ ..+|...-..
T Consensus 45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev-~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~---~~~g~l~~~~~ 120 (246)
T KOG3069|consen 45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEV-CFPGGRRDPHDKSDIQTALRETEEEIGLDPELV---DVLGALPPFVL 120 (246)
T ss_pred cEEEEEEEcCCCceEEEEEeccccccccCCce-eCCCCcCCccccchHHHHHHHHHHHhCCCHHHh---hhhhhccceee
Confidence 45554454446778999999999999999999 59999998765 556799999999999999765 3555543222
Q ss_pred ecCCceeeEEEEEEEEEeCCCccccCCCCCcCC
Q 020196 297 INGFSYKRDVIFCYDLKLPEDFVPMNQGNCIKA 329 (329)
Q Consensus 297 ~~~~gi~~Ev~yvYdLeLp~df~P~p~DgEVea 329 (329)
..+-.+.|-+.+.++-.+- +.+.++.|||++
T Consensus 121 r~~~~v~p~v~~l~~~~~l--~~~~ln~gEv~~ 151 (246)
T KOG3069|consen 121 RSGWSVFPVVGFLSDKKIL--PSLRLNSGEVES 151 (246)
T ss_pred ccCcccceeEEEEeccccc--ccccCCchheee
Confidence 2333466777776654331 356889999974
No 78
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=98.38 E-value=3.1e-06 Score=75.82 Aligned_cols=73 Identities=18% Similarity=0.060 Sum_probs=50.0
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYD 311 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYd 311 (329)
+++++.|+.. ....++.|+ ++||+++.||++++||+||++||+|+..+. +..+|.+.+. . +...+.+++|.
T Consensus 59 ~~vlLvrq~r-~~~~~~~~e-lPaG~ve~gE~~~~aA~REl~EEtG~~~~~---l~~l~~~~~~---~-~~~~~~~~~f~ 129 (185)
T PRK11762 59 DTLLLIREYA-AGTERYELG-FPKGLIDPGETPLEAANRELKEEVGFGARQ---LTFLKELSLA---P-SYFSSKMNIVL 129 (185)
T ss_pred CEEEEEEeec-CCCCCcEEE-ccceeCCCCCCHHHHHHHHHHHHHCCCCcc---eEEEEEEecC---C-CccCcEEEEEE
Confidence 3455555532 235677785 899999999999999999999999998764 4566654322 2 12235566665
Q ss_pred EE
Q 020196 312 LK 313 (329)
Q Consensus 312 Le 313 (329)
+.
T Consensus 130 a~ 131 (185)
T PRK11762 130 AE 131 (185)
T ss_pred EE
Confidence 54
No 79
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=98.37 E-value=8.4e-06 Score=72.29 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=61.7
Q ss_pred cCCCCceeEEEecccCccCCceeeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHh
Q 020196 195 STFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEE 274 (329)
Q Consensus 195 ~~~g~~~l~~iERaa~~lfGi~~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~E 274 (329)
|.+|.+.-...+.... ....-|+.+....++ .-+++ ++... .|+ ++||+++.||++++||+||++|
T Consensus 5 d~~~~~v~l~~~~~~~-----~~~~~~V~ii~~~~~-~~LL~-~~~~~------~~e-lPgG~vE~gEt~~eaA~REl~E 70 (156)
T TIGR02705 5 DYYGNKVTLAFEKEPF-----SPNPNHVLVIPRYKD-QWLLT-EHKRR------GLE-FPGGKVEPGETSKEAAIREVME 70 (156)
T ss_pred cCCCCEEEEEEeCCcc-----cCCCCEEEEEEEECC-EEEEE-EEcCC------cEE-CCceecCCCCCHHHHHHHHHHH
Confidence 4455555455444331 111224544444444 34444 44322 254 7799999999999999999999
Q ss_pred hhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEEEEeC
Q 020196 275 EAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLP 315 (329)
Q Consensus 275 EaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYdLeLp 315 (329)
|+|+..+ ...++|.+. . .++ ...++.++|.++..
T Consensus 71 ETG~~~~---~~~~lg~~~--~-~~~-~~~~~~~vf~A~~~ 104 (156)
T TIGR02705 71 ETGAIVK---ELHYIGQYE--V-EGE-STDFVKDVYFAEVS 104 (156)
T ss_pred HhCcEee---eeEEEEEEE--e-cCC-CcEEEEEEEEEEEe
Confidence 9999764 356777532 2 222 25678888888876
No 80
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.27 E-value=1e-05 Score=69.43 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=39.0
Q ss_pred EEEEEEC-CceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCC
Q 020196 223 NGYVEKD-GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPR 280 (329)
Q Consensus 223 ngyv~~d-~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~ 280 (329)
.+|+..+ ++.++++-|... +.| .++||++++||++.+|++||+.||+|+..
T Consensus 4 ~~~~~~~~~~~~ll~~r~~~------~~~-~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 4 PAVLRRNGEVLELLVFEHPL------AGF-QIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEeCCceEEEEEEEcCC------CcE-ECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 3455443 335777766543 346 47899999999999999999999999987
No 81
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.26 E-value=1.3e-06 Score=83.83 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=40.1
Q ss_pred EEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcc
Q 020196 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (329)
Q Consensus 233 ~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~ 282 (329)
++++.+|.++ +|||+- +.||=|++|||+++|+.||+.||+||.+.-
T Consensus 156 ~ilLa~~~~h---~~g~yS-~LAGFVE~GETlE~AV~REv~EE~Gi~V~~ 201 (279)
T COG2816 156 EILLARHPRH---FPGMYS-LLAGFVEPGETLEQAVAREVFEEVGIKVKN 201 (279)
T ss_pred ceeecCCCCC---CCccee-eeeecccCCccHHHHHHHHHHHhhCeEEee
Confidence 3888888765 499995 779999999999999999999999997653
No 82
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=98.26 E-value=4.9e-06 Score=75.17 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=48.0
Q ss_pred CCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEEEEeCCC
Q 020196 246 YPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPED 317 (329)
Q Consensus 246 ~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYdLeLp~d 317 (329)
-|+.|. ++||+++.||++++|++||++||+|+...- ...++.+ +.. .+...+..++|..++..+
T Consensus 75 ~~~~le-lPaG~ve~gE~~~~aA~REl~EEtG~~~~~---~~~~~~~---~~~-~g~~~~~~~~f~a~~~~~ 138 (185)
T TIGR00052 75 EPWLLE-LSAGMVEKGESPEDVARREAIEEAGYQVKN---LRKLLSF---YSS-PGGVTELIHLFIAEVDDN 138 (185)
T ss_pred cceEEE-ECcEecCCCCCHHHHHHHHccccccceecc---eEEEEEE---EcC-CCCCcEEEEEEEEEEchh
Confidence 366775 899999999999999999999999998753 3444432 222 234568888998887653
No 83
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.23 E-value=1.5e-05 Score=67.39 Aligned_cols=47 Identities=28% Similarity=0.356 Sum_probs=38.5
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcc
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~ 282 (329)
+.+++ +|+.. .++|+|. ++||.++.||++.+|++||+.||+|+....
T Consensus 16 ~~lL~-~r~~~--~~~~~w~-lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 16 GLLVI-RRGIE--PGRGKLA-LPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred CEEEE-EeecC--CCCCeEE-CCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 34555 55432 3689995 999999999999999999999999998764
No 84
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=98.04 E-value=8.8e-06 Score=79.24 Aligned_cols=48 Identities=29% Similarity=0.376 Sum_probs=39.9
Q ss_pred ceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcc
Q 020196 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (329)
Q Consensus 231 ~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~ 282 (329)
+.++++.| .|+.-|||| .++||=+++|||.+||++||.+||+||..+.
T Consensus 199 ~~~~LL~R---~~r~~~gl~-t~lAGFlEpGES~eeav~REtwEEtGi~V~~ 246 (345)
T KOG3084|consen 199 GKHALLGR---QKRYPPGLW-TCLAGFLEPGESIEEAVRRETWEETGIEVEV 246 (345)
T ss_pred CCEeeeec---ccCCCCchh-hhhhccCCccccHHHHHHHHHHHHhCceeee
Confidence 34677755 455667888 5789999999999999999999999998875
No 85
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=97.84 E-value=7.2e-05 Score=68.17 Aligned_cols=45 Identities=22% Similarity=0.159 Sum_probs=37.8
Q ss_pred CceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCC
Q 020196 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPR 280 (329)
Q Consensus 230 ~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~ 280 (329)
+..++++-||.. +|+|. ++||.++.||++.+|++||+.||+|+..
T Consensus 47 ~~l~vLl~~r~~-----~g~wa-lPGG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 47 PILQFVAIKRPD-----SGEWA-IPGGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred CeeEEEEEEeCC-----CCcCc-CCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence 356777878853 58885 8999999999999999999999997653
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=97.80 E-value=0.00014 Score=66.93 Aligned_cols=102 Identities=22% Similarity=0.231 Sum_probs=65.0
Q ss_pred eEeEEEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEec
Q 020196 219 AVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDIN 298 (329)
Q Consensus 219 gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~ 298 (329)
||-+-..++.||..++.+++.=.- ++ -+..=-++||-|.+||+++.||+||++||+|+..+... .-..-|.++.
T Consensus 75 gVaIl~il~~dG~~~ivL~kQfRp-P~-Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~----~s~~~f~DPG 148 (225)
T KOG3041|consen 75 GVAILAILESDGKPYIVLVKQFRP-PT-GKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDM----VSPTVFLDPG 148 (225)
T ss_pred eEEEEEEEecCCcEEEEEEEeecC-CC-CcEEEEcccccccCCCchHHHHHHHHHHHhCccceeee----ccccEEcCCC
Confidence 455555666688888888764321 11 12222478999999999999999999999999865532 2223344331
Q ss_pred CCce-eeEEEEEEEEEeCCCccc--cCCCCC
Q 020196 299 GFSY-KRDVIFCYDLKLPEDFVP--MNQGNC 326 (329)
Q Consensus 299 ~~gi-~~Ev~yvYdLeLp~df~P--~p~DgE 326 (329)
-.+. ..-+.+.||..+|+...| ++.|||
T Consensus 149 ltn~~~~iv~v~idg~~pEnqrp~q~ledgE 179 (225)
T KOG3041|consen 149 LTNCNLCIVVVDIDGDVPENQRPVQQLEDGE 179 (225)
T ss_pred CCCCceEEEEEEecCCCccccCccccCCCCc
Confidence 1111 224456677788887766 456777
No 87
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=97.75 E-value=0.00029 Score=64.67 Aligned_cols=58 Identities=21% Similarity=0.189 Sum_probs=43.7
Q ss_pred CeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEEEEe
Q 020196 249 MLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKL 314 (329)
Q Consensus 249 ~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYdLeL 314 (329)
.| .++||.++.||++++|++||+.||+|+...- ..+++ +| +.++ |+..+.+++|..+.
T Consensus 83 ~l-E~PAG~vd~gE~p~~aA~REL~EETGy~a~~---~~~l~--~~-~~sp-g~~~e~~~~fla~~ 140 (202)
T PRK10729 83 LL-EMVAGMIEEGESVEDVARREAIEEAGLIVGR---TKPVL--SY-LASP-GGTSERSSIMVGEV 140 (202)
T ss_pred EE-EccceEcCCCCCHHHHHHHHHHHHhCceeeE---EEEEE--EE-EcCC-CcCceEEEEEEEEE
Confidence 45 5899999999999999999999999998643 34443 22 2232 45668889998875
No 88
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=97.39 E-value=0.0002 Score=62.85 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=29.2
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhCCCCcccC
Q 020196 253 LAGGGLPHGIACGENIIKECEEEAGIPRSISN 284 (329)
Q Consensus 253 ~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~ 284 (329)
+++||++++|++.+||+||+.||||+...+.+
T Consensus 40 ~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~ 71 (145)
T KOG2839|consen 40 VPKGGWEPDESVEEAALRETWEEAGVKGKLGR 71 (145)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCceeeeec
Confidence 55999999999999999999999999988753
No 89
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=97.35 E-value=0.0018 Score=58.98 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=41.2
Q ss_pred ccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEEEEEe
Q 020196 252 ILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKL 314 (329)
Q Consensus 252 ~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvYdLeL 314 (329)
-++||.++.| ++++||+||+.||+|+...- ..+++.+ +.++ |+..|..++|.++.
T Consensus 82 ElPAG~vd~~-~p~~aA~REL~EETGy~a~~---~~~l~~~---~~sp-G~s~e~~~lf~a~~ 136 (191)
T PRK15009 82 ETCAGLLDND-EPEVCIRKEAIEETGYEVGE---VRKLFEL---YMSP-GGVTELIHFFIAEY 136 (191)
T ss_pred EEeccccCCC-CHHHHHHHHHHHhhCCccce---EEEeeEE---EcCC-cccCcEEEEEEEEE
Confidence 4789999966 79999999999999997753 3455432 3333 45578889898875
No 90
>PLN03143 nudix hydrolase; Provisional
Probab=97.30 E-value=0.0016 Score=63.30 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=35.5
Q ss_pred CCceEEEEEecCCCCCCCCCCeeccccCCCCCC-CCHHHHHHHHHHhhhCCCCc
Q 020196 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHG-IACGENIIKECEEEAGIPRS 281 (329)
Q Consensus 229 d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~G-Es~~ea~iRE~~EEaGL~~~ 281 (329)
+++.++++-|+... ..-.-.|. ++||.++.+ |++.+||+||++||+|+...
T Consensus 140 ~ge~~VlLVrQ~R~-pvg~~~lE-~PAG~lD~~~edp~~aA~REL~EETG~~~~ 191 (291)
T PLN03143 140 EGETYAVLTEQVRV-PVGKFVLE-LPAGMLDDDKGDFVGTAVREVEEETGIKLK 191 (291)
T ss_pred CCCEEEEEEEeEec-CCCcEEEE-ecccccCCCCCCHHHHHHHHHHHHHCCccc
Confidence 44555555555432 11112554 889999974 89999999999999999754
No 91
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=97.19 E-value=0.0063 Score=48.72 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=51.1
Q ss_pred ceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEEEE
Q 020196 231 QKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCY 310 (329)
Q Consensus 231 ~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~yvY 310 (329)
+++++++||.. +..|+|+|+ +++|-++.+++..+++.+|..||+++ . ...+|.+...+.. . .-.+.+|
T Consensus 13 ~~~~ll~kR~~-~gl~~glwe-fP~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~H~fth---~-~~~~~~~ 80 (118)
T cd03431 13 DGRVLLEKRPE-KGLLAGLWE-FPSVEWEEEADGEEALLSALKKALRL--S----LEPLGTVKHTFTH---F-RLTLHVY 80 (118)
T ss_pred CCeEEEEECCC-CCCCCccee-CCCccccCCcCHHHHHHHHHHHHhCc--c----cccceeEEEecCC---e-EEEEEEE
Confidence 35799999954 578999998 88888889999999999999999875 1 1234555544332 1 1235566
Q ss_pred EEEeC
Q 020196 311 DLKLP 315 (329)
Q Consensus 311 dLeLp 315 (329)
.+.+.
T Consensus 81 ~~~~~ 85 (118)
T cd03431 81 LARLE 85 (118)
T ss_pred EEEEe
Confidence 66554
No 92
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=96.10 E-value=0.017 Score=56.19 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=43.8
Q ss_pred EEEEEECCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCccc
Q 020196 223 NGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSIS 283 (329)
Q Consensus 223 ngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~ 283 (329)
.++|.+ ..++++|-+=-..-..++|.|- +..|-+..||++.+.++||++||+|++.+..
T Consensus 119 g~~V~n-~~~eVlVv~e~d~~~~~~~~wK-~ptG~v~~~e~i~~gavrEvkeetgid~ef~ 177 (295)
T KOG0648|consen 119 GAFVLN-KKKEVLVVQEKDGAVKIRGGWK-LPTGRVEEGEDIWHGAVREVKEETGIDTEFV 177 (295)
T ss_pred eeeEec-CCceeEEEEecccceeeccccc-ccceEecccccchhhhhhhhHHHhCcchhhh
Confidence 344553 3356666432233456788885 7788999999999999999999999977764
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=90.85 E-value=0.96 Score=36.78 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=44.5
Q ss_pred CCceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCceeeEEEE
Q 020196 229 DGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308 (329)
Q Consensus 229 d~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~gi~~Ev~y 308 (329)
+.+++++++||. .|-.+-|+|+ ++.--.+ +++..+.+.+.+.+..|+..... ..+|.+....-. .+-.+.
T Consensus 6 ~~~~~~Ll~kRp-~~gll~GLwe-fP~~e~~-~~~~~~~l~~~~~~~~~~~~~~~---~~~~~v~H~fSH----~~~~~~ 75 (114)
T PF14815_consen 6 RSQGRVLLEKRP-EKGLLAGLWE-FPLIESD-EEDDEEELEEWLEEQLGLSIRSV---EPLGTVKHVFSH----RRWTIH 75 (114)
T ss_dssp ETTSEEEEEE---SSSTTTT-EE---EEE-S-SS-CHHHHHHHTCCSSS-EEEE----S-SEEEEEE-SS----EEEEEE
T ss_pred EeCCEEEEEECC-CCChhhcCcc-cCEeCcc-CCCCHHHHHHHHHHHcCCChhhh---eecCcEEEEccc----eEEEEE
Confidence 345689999995 6688999998 5554444 34445667677777778765543 366767655432 134467
Q ss_pred EEEEEeCCC
Q 020196 309 CYDLKLPED 317 (329)
Q Consensus 309 vYdLeLp~d 317 (329)
+|.+.++.+
T Consensus 76 ~~~~~~~~~ 84 (114)
T PF14815_consen 76 VYEVEVSAD 84 (114)
T ss_dssp EEEEEEE-S
T ss_pred EEEEEecCC
Confidence 788888765
No 94
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=88.34 E-value=1.1 Score=40.70 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=45.5
Q ss_pred eEEEEEecCCC--CCCCCCCeeccccCCCCCCCC--HH-----HHHHHHHHhhhCCCCcccCCceeeeEEEE
Q 020196 232 KFLWIGKRSQV--KSTYPGMLDILAGGGLPHGIA--CG-----ENIIKECEEEAGIPRSISNRARPVGAVSY 294 (329)
Q Consensus 232 ~~lwI~rRS~~--K~t~PG~~D~~vaGgi~~GEs--~~-----ea~iRE~~EEaGL~~~~~~~~~~~G~IsY 294 (329)
.+++|-.|-.. -.-..|++...+|||+..|+. +. -++.||+.||.+|.....+.+.++|-|.-
T Consensus 72 devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINd 143 (203)
T COG4112 72 DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIND 143 (203)
T ss_pred CEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecC
Confidence 36777777532 233568888899999987642 22 34789999999999877666788887653
No 95
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=87.22 E-value=1.4 Score=41.77 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=31.5
Q ss_pred EEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhh
Q 020196 233 FLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEA 276 (329)
Q Consensus 233 ~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEa 276 (329)
++..-||+.. |.|- +.||.+.+||-+-.+++||..|||
T Consensus 140 e~vavkr~d~-----~~WA-iPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKRPDN-----GEWA-IPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred EEEEEecCCC-----Cccc-CCCCcCCchhhhhHHHHHHHHHHH
Confidence 4556677765 5553 779999999999999999999998
No 96
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=87.17 E-value=2 Score=37.68 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=29.2
Q ss_pred CCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCc
Q 020196 248 GMLDILAGGGLPHGIACGENIIKECEEEAGIPRS 281 (329)
Q Consensus 248 G~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~ 281 (329)
|-|. +..|-...||.++-++.||..||+||.++
T Consensus 36 GAWS-IPKGey~~gEdp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 36 GAWS-IPKGEYTGGEDPWLAARREFSEEIGICVD 68 (161)
T ss_pred Cccc-ccccccCCCcCHHHHHHHHhhhhhceeec
Confidence 6674 67899999999999999999999999875
No 97
>PF14443 DBC1: DBC1
Probab=72.33 E-value=16 Score=31.71 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=50.7
Q ss_pred eEEEEEecCCCCCCCCCCeeccccCCCCCC--CCHHHHHHHHHHhhhCCCCcccCCceeeeEEEEEEecCCc--eeeEEE
Q 020196 232 KFLWIGKRSQVKSTYPGMLDILAGGGLPHG--IACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFS--YKRDVI 307 (329)
Q Consensus 232 ~~lwI~rRS~~K~t~PG~~D~~vaGgi~~G--Es~~ea~iRE~~EEaGL~~~~~~~~~~~G~IsY~~~~~~g--i~~Ev~ 307 (329)
.+++|.+|.+.-----|-||-.-=|+=+.. .+...+|+|=++|=+||+.+--.+=...-.|.|......+ -+.|+.
T Consensus 8 lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~Ct~W~rf~Ei~Y~R~~~~~~~~~~Eiv 87 (126)
T PF14443_consen 8 LKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNCTQWYRFAEIHYYRPGSDGFPSHQEIV 87 (126)
T ss_pred eeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhcCccceeeEEEEecCCCCCCCceeEEE
Confidence 578888887643334477776644544433 4678999999999999988754332233367887654322 345766
Q ss_pred EEE
Q 020196 308 FCY 310 (329)
Q Consensus 308 yvY 310 (329)
.+|
T Consensus 88 VlF 90 (126)
T PF14443_consen 88 VLF 90 (126)
T ss_pred EEE
Confidence 656
No 98
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=64.14 E-value=99 Score=28.65 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=42.6
Q ss_pred CceEEEEEecCCCCCCCCCCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcccCCceeeeEE--EEEEecCC-------
Q 020196 230 GQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAV--SYTDINGF------- 300 (329)
Q Consensus 230 ~~~~lwI~rRS~~K~t~PG~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~~~~~~~~G~I--sY~~~~~~------- 300 (329)
+-.+|++=|...+. + -+.||-+.+||+..+.+.|.+.|-+|....... .--+|.. .+..++-+
T Consensus 56 ~~PHvLLLq~~~~~------f-kLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~-~w~vge~l~~WwRp~Fe~~~YPYl 127 (188)
T PF13869_consen 56 GHPHVLLLQIGNTF------F-KLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDP-DWEVGECLGTWWRPNFEPFMYPYL 127 (188)
T ss_dssp TEEEEEEEEETTTE------E-E-SEEE--TT--HHHHHHHHHHHHHB-SSSS-----EEEEEEEEEEESSSSS--BSS-
T ss_pred CCcEEEEEeccCcc------c-cCCccEeCCCCChhHHHHHHHHHHcCCCcCCCC-CcEecCEEEEEeCCCCCCCCCCCC
Confidence 33455555544332 2 266999999999999999999999998764422 2233432 23322210
Q ss_pred --c--eeeEEEEEEEEEeCCC
Q 020196 301 --S--YKRDVIFCYDLKLPED 317 (329)
Q Consensus 301 --g--i~~Ev~yvYdLeLp~d 317 (329)
. --.|+.-+|...||+.
T Consensus 128 P~HitkPKE~~klylV~Lpe~ 148 (188)
T PF13869_consen 128 PPHITKPKECIKLYLVQLPEK 148 (188)
T ss_dssp -TT-SS-SEEEEEEEEE--SS
T ss_pred CcccCChhheeEEEEEecCCC
Confidence 1 1348999999999975
No 99
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=62.81 E-value=7.9 Score=44.95 Aligned_cols=66 Identities=24% Similarity=0.418 Sum_probs=48.9
Q ss_pred eeeEeEEEEEEECCceEEEEEecCCCCCCCCCCeecc--ccCCCCCCC-----CHHHHHHHHHHhhhCCCCcc
Q 020196 217 AYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDIL--AGGGLPHGI-----ACGENIIKECEEEAGIPRSI 282 (329)
Q Consensus 217 ~~gVHlngyv~~d~~~~lwI~rRS~~K~t~PG~~D~~--vaGgi~~GE-----s~~ea~iRE~~EEaGL~~~~ 282 (329)
++.---|||.+.+|---+++||++.-++.|...+..- .-|.-+.|- ...+.++||..+|+||..+-
T Consensus 223 aFDeagnGY~Rseg~~avllqrk~~ArRvYAtilnartNTDGfKEqGvTfP~G~~Q~qLi~e~Yse~Gl~P~s 295 (2376)
T KOG1202|consen 223 AFDEAGNGYCRSEGVVAVLLQRKSLARRVYATILNARTNTDGFKEQGVTFPSGDMQEQLIRETYSEAGLNPES 295 (2376)
T ss_pred chhccCCceeecCceEEEEEehhHHHHHHHHHhhccccCCCchhhcCccCCCcHHHHHHHHHHHHhcCCCccc
Confidence 3445679999988888899999999999998665310 123333333 35789999999999998864
No 100
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=53.94 E-value=21 Score=35.51 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=26.1
Q ss_pred ccccCCCCCCCCHHHHHHHHHHhhhCCCCc
Q 020196 252 ILAGGGLPHGIACGENIIKECEEEAGIPRS 281 (329)
Q Consensus 252 ~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~ 281 (329)
-+|+|-++...+-.+-+.||+.||.|.+..
T Consensus 287 ELcag~Vd~p~s~~e~a~~e~veecGYdlp 316 (405)
T KOG4432|consen 287 ELCAGRVDDPFSDPEKAARESVEECGYDLP 316 (405)
T ss_pred eeecccCCCCcccHHHHHHHHHHHhCCCCC
Confidence 368899998899999999999999997654
No 101
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=45.32 E-value=10 Score=20.65 Aligned_cols=12 Identities=50% Similarity=1.046 Sum_probs=10.4
Q ss_pred cceeeecccCCC
Q 020196 8 LTQTIRLSFPPL 19 (329)
Q Consensus 8 ~~~~~~~~~~~~ 19 (329)
.|||.|+.||.|
T Consensus 1 mthsmrlrfptl 12 (14)
T PF08057_consen 1 MTHSMRLRFPTL 12 (14)
T ss_pred Cccceeeecccc
Confidence 478999999988
No 102
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=39.67 E-value=48 Score=33.12 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=29.6
Q ss_pred CCeeccccCCCCCCCCHHHHHHHHHHhhhCCCCcc
Q 020196 248 GMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282 (329)
Q Consensus 248 G~~D~~vaGgi~~GEs~~ea~iRE~~EEaGL~~~~ 282 (329)
|.-=-+|||-|....++.|-+..|+.||.|..++.
T Consensus 78 g~tielc~g~idke~s~~eia~eev~eecgy~v~~ 112 (405)
T KOG4432|consen 78 GYTIELCAGLIDKELSPREIASEEVAEECGYRVDP 112 (405)
T ss_pred ceeeeeeccccccccCHHHHhHHHHHHHhCCcCCh
Confidence 44334789999999999999999999999987764
No 103
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.18 E-value=54 Score=26.12 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=14.2
Q ss_pred HHHHHHHhhhCCCCccc
Q 020196 267 NIIKECEEEAGIPRSIS 283 (329)
Q Consensus 267 a~iRE~~EEaGL~~~~~ 283 (329)
++++|+-||+||+-..+
T Consensus 58 ~LikeAv~ELgLDFsKv 74 (82)
T PF11212_consen 58 ALIKEAVEELGLDFSKV 74 (82)
T ss_pred HHHHHHHHHhCCcHHHH
Confidence 68999999999986544
Done!