BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020197
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Query: 107 DMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLK-RTGKSCRLRWLNYLRPDVRLGK 165
++ KGPWT EED ++I ++ +G RW+ +A+ LK R GK CR RW N+L P+V+
Sbjct: 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK--HLKGRIGKQCRERWHNHLNPEVKKTS 81
Query: 166 ITXXXXXXXXXXHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQA 212
T H R GNRW+++A+ LPGRTDN +KN+W + ++++
Sbjct: 82 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 144 RTGKSCRLRWLNYLRPDVRLGKITXXXXXXXXXXHSRWG-NRWSKLAQHLPGRTDNEIKN 202
RT C+ RW L P++ G T ++G RWS +A+HL GR + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 203 YWRTRVQKQAKQ 214
W + + K+
Sbjct: 68 RWHNHLNPEVKK 79
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 107 DMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLK-RTGKSCRLRWLNYLRPDVRLGK 165
D+ KGPWT EED K+I + +G +W +A+ LK R GK CR RW N+L P+V+
Sbjct: 4 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK--HLKGRLGKQCRERWHNHLNPEVKKSS 61
Query: 166 ITXXXXXXXXXXHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQA 212
T H GNRW+++A+ LPGRTDN +KN+W + ++++
Sbjct: 62 WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 3/107 (2%)
Query: 107 DMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLK-RTGKSCRLRWLNYLRPDVRLGK 165
++ KGPWT EED ++I + +G RW+ +A+ LK R GK CR RW N+L P+V+
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPEVKKTS 58
Query: 166 ITXXXXXXXXXXHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQA 212
T H R GNRW+++A+ LPGRTDN IKN+W + ++++
Sbjct: 59 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 3/107 (2%)
Query: 107 DMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLK-RTGKSCRLRWLNYLRPDVRLGK 165
++ KGPWT EED ++I + +G RW+ +A+ LK R GK CR RW N+L P+V+
Sbjct: 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPEVKKTS 112
Query: 166 ITXXXXXXXXXXHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQA 212
T H R GNRW+++A+ LPGRTDN IKN+W + ++++
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITXX 169
K WT EED KL + +G W +A RT C+ RW L P++ G T
Sbjct: 6 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKE 64
Query: 170 XXXXXXXXHSRWG-NRWSKLAQHLPGRTDNEIKNYWRTRVQKQAKQ 214
++G RWS +A+HL GR + + W + + K+
Sbjct: 65 EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 110
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLK-RTGKSCRLRWLNYLRPDVRLGKITX 168
KGPWT EED ++I + +G RW+ +A+ LK R GK CR RW N+L P+V+ T
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 169 XXXXXXXXXHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQA 212
H R GNRW+++A+ LPGRTDN IKN+W + ++++
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITXX 169
KGP+T ED + Y+ +G W R+ R+ K CR RW N+L P V T
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 170 XXXXXXXXHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211
+ + G++WS +A+ +PGRTDN IKN W + + K+
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITXX 169
K +T EED KL ++ +G W R+++ + R + CR RW NY+ P +R +
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 170 XXXXXXXXHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQAKQLKC 217
++ +G +W+K+++ L R+DN I+N W + +AK K
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQKS 107
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 109 RKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITX 168
+K +T EED L + HG W +A R + CR RW NYL P + T
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSD-WKMIA-ATFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 169 XXXXXXXXXHSRWGNRWSKLAQHLPGRTDNEIKNYWRT 206
+G +W+ +A+ PGRTD IKN W T
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLK-RTGKSCRLRWLNYLRPD 160
KGPWT EED +LI + +G RW+ +A+ LK R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPE 52
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLK-RTGKSCRLRWLNYLRPD 160
KGPWT EED ++I + +G RW+ +A+ LK R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPE 52
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLK-RTGKSCRLRWLNYLRPD 160
KGPWT EED ++I + +G RW+ +A+ LK R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPE 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 28/35 (80%)
Query: 178 HSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQA 212
H R GNRW+++A+ LPGRTDN IKN+W + ++++
Sbjct: 20 HKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 28/35 (80%)
Query: 178 HSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQA 212
H R GNRW+++A+ LPGRTDN IKN+W + ++++
Sbjct: 18 HKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human
Cell Division Cycle 5-Like Protein
Length = 70
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 113 WTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVR 162
W ED L ++ +G+ +W+R+A +++ K C+ RW +L P ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIK 60
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 30.8 bits (68), Expect = 0.98, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 113 WTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWL 154
W +E+ LI+ T G G W +A G RT + CR +L
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYL 53
>pdb|1W39|A Chain A, Crystal Structure Of An Artificial Top Component Of Turnip
Yellow Mosaic Virus
pdb|1W39|B Chain B, Crystal Structure Of An Artificial Top Component Of Turnip
Yellow Mosaic Virus
pdb|1W39|C Chain C, Crystal Structure Of An Artificial Top Component Of Turnip
Yellow Mosaic Virus
Length = 189
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 215 LKCDVNSKQ--FKDTVRYLWMPRLIERIQANKSSPVATT 251
+KC + Q KD+++YL P+L+ I A ++P A+T
Sbjct: 130 VKCPLEMMQPRVKDSIQYLDSPKLLISITAQPTAPPAST 168
>pdb|1AUY|A Chain A, Turnip Yellow Mosaic Virus
pdb|1AUY|B Chain B, Turnip Yellow Mosaic Virus
pdb|1AUY|C Chain C, Turnip Yellow Mosaic Virus
Length = 190
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 215 LKCDVNSKQ--FKDTVRYLWMPRLIERIQANKSSPVATT 251
+KC + Q KD+++YL P+L+ I A ++P A+T
Sbjct: 131 VKCPLEMMQPRVKDSIQYLDSPKLLISITAQPTAPPAST 169
>pdb|2FZ1|A Chain A, Structure Of Empty Head Turnip Yellow Mosaic Virus (atc)
At 100 K
pdb|2FZ1|B Chain B, Structure Of Empty Head Turnip Yellow Mosaic Virus (atc)
At 100 K
pdb|2FZ1|C Chain C, Structure Of Empty Head Turnip Yellow Mosaic Virus (atc)
At 100 K
pdb|2FZ2|A Chain A, Structure Of Turnip Yellow Mosaic Virus At 100 K
pdb|2FZ2|B Chain B, Structure Of Turnip Yellow Mosaic Virus At 100 K
pdb|2FZ2|C Chain C, Structure Of Turnip Yellow Mosaic Virus At 100 K
Length = 189
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 215 LKCDVNSKQ--FKDTVRYLWMPRLIERIQANKSSPVATT 251
+KC + Q KD+++YL P+L+ I A ++P A+T
Sbjct: 130 VKCPLEMMQPRVKDSIQYLDSPKLLISITAQPTAPPAST 168
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPD 160
K WT EED KL + +G W +A RT C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPD 160
K WT EED KL + +G W +A RT C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1TF0|A Chain A, Crystal Structure Of The Ga Module Complexed With Human
Serum Albumin
Length = 572
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 1 MYGFARFHKIFSANLLYAASKTYPSNLETTAAA 33
+Y +AR H +S LL +KTY + LE AA
Sbjct: 331 LYEYARRHPDYSVVLLLRLAKTYETTLEKCCAA 363
>pdb|1BKE|A Chain A, Human Serum Albumin In A Complex With Myristic Acid And
Tri- Iodobenzoic Acid
Length = 581
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 1 MYGFARFHKIFSANLLYAASKTYPSNLETTAAA 33
+Y +AR H +S LL +KTY + LE AA
Sbjct: 328 LYEYARRHPDYSVVLLLRLAKTYETTLEKCCAA 360
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 183 NRWSKLAQHLPGRTDNEIKNYW 204
+RW K+AQ++ GRT E+K ++
Sbjct: 44 DRWKKVAQYVKGRTPEEVKKHY 65
>pdb|3CX9|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
Myristic Acid And Lysophosphatidylethanolamine
pdb|3SQJ|A Chain A, Recombinant Human Serum Albumin From Transgenic Plant
pdb|3SQJ|B Chain B, Recombinant Human Serum Albumin From Transgenic Plant
Length = 582
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 1 MYGFARFHKIFSANLLYAASKTYPSNLETTAAA 33
+Y +AR H +S LL +KTY + LE AA
Sbjct: 329 LYEYARRHPDYSVVLLLRLAKTYETTLEKCCAA 361
>pdb|2VDB|A Chain A, Structure Of Human Serum Albumin With S-Naproxen And The
Ga Module
Length = 579
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 1 MYGFARFHKIFSANLLYAASKTYPSNLETTAAA 33
+Y +AR H +S LL +KTY + LE AA
Sbjct: 326 LYEYARRHPDYSVVLLLRLAKTYETTLEKCCAA 358
>pdb|2I2Z|A Chain A, Human Serum Albumin Complexed With Myristate And Aspirin
Length = 585
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 1 MYGFARFHKIFSANLLYAASKTYPSNLETTAAA 33
+Y +AR H +S LL +KTY + LE AA
Sbjct: 331 LYEYARRHPDYSVVLLLRLAKTYETTLEKCCAA 363
>pdb|1HK3|A Chain A, Human Serum Albumin Mutant R218p Complexed With Thyroxine
(3,3',5,5'-Tetraiodo-L-Thyronine)
Length = 585
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 1 MYGFARFHKIFSANLLYAASKTYPSNLETTAAA 33
+Y +AR H +S LL +KTY + LE AA
Sbjct: 331 LYEYARRHPDYSVVLLLRLAKTYETTLEKCCAA 363
>pdb|1AO6|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1AO6|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1BM0|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1BM0|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1E7E|A Chain A, Human Serum Albumin Complexed With Decanoic Acid (Capric
Acid)
pdb|1E7F|A Chain A, Human Serum Albumin Complexed With Dodecanoic Acid (Lauric
Acid)
pdb|1E7G|A Chain A, Human Serum Albumin Complexed With Tetradecanoic Acid
(Myristic Acid) Human Serum Albumin Complexed With
Myristic Acid
pdb|1E7I|A Chain A, Human Serum Albumin Complexed With Octadecanoic Acid
(Stearic Acid)
pdb|1E7H|A Chain A, Human Serum Albumin Complexed With Hexadecanoic Acid
(Palmitic Acid)
pdb|1E7A|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Propofol
pdb|1E7A|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Propofol
pdb|1E7B|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Halothane
pdb|1E7B|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
The General Anesthetic Halothane
pdb|1E7C|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
General Anesthetic Halothane
pdb|1E78|A Chain A, Crystal Structure Of Human Serum Albumin
pdb|1E78|B Chain B, Crystal Structure Of Human Serum Albumin
pdb|1H9Z|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
R-(+) Enantiomer Of Warfarin
pdb|1HA2|A Chain A, Human Serum Albumin Complexed With Myristic Acid And The
S- (-) Enantiomer Of Warfarin
pdb|1GNI|A Chain A, Human Serum Albumin Complexed With Cis-9-Octadecenoic Acid
(Oleic Acid)
pdb|1GNJ|A Chain A, Human Serum Albumin Complexed With Cis-5,8,11,14-
Eicosatetraenoic Acid (Arachidonic Acid)
pdb|1O9X|A Chain A, Human Serum Albumin Complexed With Tetradecanoic Acid
(Myristic Acid) And Hemin
pdb|1HK1|A Chain A, Human Serum Albumin Complexed With Thyroxine (3,3',5,5'-
Tetraiodo-L-Thyronine)
pdb|1HK4|A Chain A, Human Serum Albumin Complexed With Thyroxine (3,3',5,5'-
Tetraiodo-L-Thyronine) And Myristic Acid (Tetradecanoic
Acid)
pdb|1N5U|A Chain A, X-Ray Study Of Human Serum Albumin Complexed With Heme
pdb|2BX8|A Chain A, Human Serum Albumin Complexed With Azapropazone
pdb|2BX8|B Chain B, Human Serum Albumin Complexed With Azapropazone
pdb|2BXA|A Chain A, Human Serum Albumin Complexed With 3-Carboxy-4-Methyl-5-
Propyl-2-Furanpropanoic Acid (Cmpf)
pdb|2BXA|B Chain B, Human Serum Albumin Complexed With 3-Carboxy-4-Methyl-5-
Propyl-2-Furanpropanoic Acid (Cmpf)
pdb|2BXB|A Chain A, Human Serum Albumin Complexed With Oxyphenbutazone
pdb|2BXB|B Chain B, Human Serum Albumin Complexed With Oxyphenbutazone
pdb|2BXC|A Chain A, Human Serum Albumin Complexed With Phenylbutazone
pdb|2BXC|B Chain B, Human Serum Albumin Complexed With Phenylbutazone
pdb|2BXD|A Chain A, Human Serum Albumin Complexed With Warfarin
pdb|2BXD|B Chain B, Human Serum Albumin Complexed With Warfarin
pdb|2BXE|A Chain A, Human Serum Albumin Complexed With Diflunisal
pdb|2BXE|B Chain B, Human Serum Albumin Complexed With Diflunisal
pdb|2BXF|A Chain A, Human Serum Albumin Complexed With Diazepam
pdb|2BXF|B Chain B, Human Serum Albumin Complexed With Diazepam
pdb|2BXG|A Chain A, Human Serum Albumin Complexed With Ibuprofen
pdb|2BXG|B Chain B, Human Serum Albumin Complexed With Ibuprofen
pdb|2BXH|A Chain A, Human Serum Albumin Complexed With Indoxyl Sulfate
pdb|2BXH|B Chain B, Human Serum Albumin Complexed With Indoxyl Sulfate
pdb|2BXL|A Chain A, Human Serum Albumin Complexed With Myristate And 3,5-
Diiodosalicylic Acid
pdb|2BXM|A Chain A, Human Serum Albumin Complexed With Myristate And
Indomethacin
pdb|2BXN|A Chain A, Human Serum Albumin Complexed With Myristate And
Iodipamide
pdb|2BXO|A Chain A, Human Serum Albumin Complexed With Myristate And
Oxyphenbutazone
pdb|2BXP|A Chain A, Human Serum Albumin Complexed With Myristate And
Phenylbutazone
pdb|2ESG|C Chain C, Solution Structure Of The Complex Between Immunoglobulin
Iga1 And Human Serum Albumin
pdb|2I30|A Chain A, Human Serum Albumin Complexed With Myristate And Salicylic
Acid
pdb|1BJ5|A Chain A, Human Serum Albumin Complexed With Myristic Acid
pdb|1UOR|A Chain A, X-Ray Study Of Recombinant Human Serum Albumin. Phases
Determined By Molecular Replacement Method, Using Low
Resolution Structure Model Of Tetragonal Form Of Human
Serum Albumin
pdb|3B9L|A Chain A, Human Serum Albumin Complexed With Myristate And Azt
pdb|3B9M|A Chain A, Human Serum Albumin Complexed With Myristate, 3'-Azido-3'-
Deoxythymidine (Azt) And Salicylic Acid
pdb|2VUE|A Chain A, Human Serum Albumin Complexed With 4z,15e-Bilirubin-Ix-
Alpha
pdb|2VUE|B Chain B, Human Serum Albumin Complexed With 4z,15e-Bilirubin-Ix-
Alpha
pdb|2VUF|A Chain A, Human Serum Albumin Complexed With Fusidic Acid
pdb|2VUF|B Chain B, Human Serum Albumin Complexed With Fusidic Acid
pdb|3A73|A Chain A, Crystal Structure Analysis Of Human Serum Albumin
Complexed With Delta 12-Prostaglandin J2
pdb|3A73|B Chain B, Crystal Structure Analysis Of Human Serum Albumin
Complexed With Delta 12-Prostaglandin J2
pdb|3JQZ|A Chain A, Crystal Structure Of Human Serum Albumin Complexed With
Lidocaine
pdb|3JQZ|B Chain B, Crystal Structure Of Human Serum Albumin Complexed With
Lidocaine
pdb|3JRY|A Chain A, Human Serum Albumin With Bound Sulfate
pdb|3JRY|B Chain B, Human Serum Albumin With Bound Sulfate
pdb|3LU6|A Chain A, Human Serum Albumin In Complex With Compound 1
pdb|3LU6|B Chain B, Human Serum Albumin In Complex With Compound 1
pdb|3LU7|A Chain A, Human Serum Albumin In Complex With Compound 2
pdb|3LU7|B Chain B, Human Serum Albumin In Complex With Compound 2
pdb|3LU8|A Chain A, Human Serum Albumin In Complex With Compound 3
pdb|3LU8|B Chain B, Human Serum Albumin In Complex With Compound 3
pdb|2XVQ|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Sarcosine
pdb|2XVQ|B Chain B, Human Serum Albumin Complexed With Dansyl-L-Sarcosine
pdb|2XVU|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Asparagine
pdb|2XVU|B Chain B, Human Serum Albumin Complexed With Dansyl-L-Asparagine
pdb|2XW0|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Phenylalanine
pdb|2XW0|B Chain B, Human Serum Albumin Complexed With Dansyl-L-Phenylalanine
pdb|2XW1|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Norvaline
pdb|2XW1|B Chain B, Human Serum Albumin Complexed With Dansyl-L-Norvaline
pdb|2YDF|A Chain A, Human Serum Albumin Complexed With Iophenoxic Acid
pdb|2YDF|B Chain B, Human Serum Albumin Complexed With Iophenoxic Acid
pdb|4EMX|A Chain A, Crystal Structure Analysis Of Human Serum Albumin In
Complex With Chloride Anions At Cryogenic Temperature
pdb|4EMX|B Chain B, Crystal Structure Analysis Of Human Serum Albumin In
Complex With Chloride Anions At Cryogenic Temperature
pdb|4E99|A Chain A, Human Serum Albumin Complex With Perfluorooctane Sulfonate
Potassium
pdb|3TDL|A Chain A, Structure Of Human Serum Albumin In Complex With Dauda
pdb|3UIV|A Chain A, Human Serum Albumin-Myristate-Amantadine Hydrochloride
Complex
pdb|3UIV|H Chain H, Human Serum Albumin-Myristate-Amantadine Hydrochloride
Complex
Length = 585
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 1 MYGFARFHKIFSANLLYAASKTYPSNLETTAAA 33
+Y +AR H +S LL +KTY + LE AA
Sbjct: 331 LYEYARRHPDYSVVLLLRLAKTYETTLEKCCAA 363
>pdb|2BXI|A Chain A, Human Serum Albumin Complexed With Myristate And
Azapropazone
pdb|2BXK|A Chain A, Human Serum Albumin Complexed With Myristate, Azapropazone
And Indomethacin
pdb|2BXQ|A Chain A, Human Serum Albumin Complexed With Myristate,
Phenylbutazone And Indomethacin
pdb|2XSI|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Glutamate And
Myristic Acid
pdb|2XVV|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Asparagine And
Myristic Acid
pdb|2XVW|A Chain A, Human Serum Albumin Complexed With Dansyl-L-Arginine And
Myristic Acid
Length = 585
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 1 MYGFARFHKIFSANLLYAASKTYPSNLETTAAA 33
+Y +AR H +S LL +KTY + LE AA
Sbjct: 331 LYEYARRHPDYSVVLLLRLAKTYETTLEKCCAA 363
>pdb|1HK2|A Chain A, Human Serum Albumin Mutant R218h Complexed With Thyroxine
(3,3',5,5'-Tetraiodo-L-Thyronine)
pdb|1HK5|A Chain A, Human Serum Albumin Mutant R218h Complexed With Thyroxine
(3,3',5,5'-Tetraiodo-L-Thyronine) And Myristic Acid
(Tetradecanoic Acid)
Length = 585
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 1 MYGFARFHKIFSANLLYAASKTYPSNLETTAAA 33
+Y +AR H +S LL +KTY + LE AA
Sbjct: 331 LYEYARRHPDYSVVLLLRLAKTYETTLEKCCAA 363
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 113 WTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYL 157
WT EED +L + G+ W LA RT + C+ RWL L
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLA-SHFPNRTDQQCQYRWLRVL 54
>pdb|1F5J|A Chain A, Crystal Structure Of Xynb, A Highly Thermostable
Beta-1,4- Xylanase From Dictyoglomus Thermophilum
Rt46b.1, At 1.8 A Resolution
pdb|1F5J|B Chain B, Crystal Structure Of Xynb, A Highly Thermostable
Beta-1,4- Xylanase From Dictyoglomus Thermophilum
Rt46b.1, At 1.8 A Resolution
Length = 199
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 43 GSSICCSHGYLPNPLLEFY 61
G+S C +G+ NPL+EFY
Sbjct: 74 GNSYLCIYGWSTNPLVEFY 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,373,361
Number of Sequences: 62578
Number of extensions: 302635
Number of successful extensions: 658
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 46
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)