Query 020197
Match_columns 329
No_of_seqs 337 out of 1732
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 5.6E-40 1.9E-44 284.6 6.4 154 30-211 5-158 (159)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 1.7E-38 5.7E-43 266.0 8.5 127 57-211 1-127 (128)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 6.1E-34 2.1E-38 230.3 9.5 104 107-211 1-104 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 7.9E-34 2.7E-38 230.7 9.0 104 110-214 1-104 (107)
5 3osg_A MYB21; transcription-DN 100.0 1.2E-32 4E-37 230.1 10.7 104 106-211 7-110 (126)
6 3zqc_A MYB3; transcription-DNA 100.0 4.5E-33 1.5E-37 234.0 8.2 106 110-216 2-107 (131)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 2.1E-30 7.3E-35 224.3 2.4 112 107-219 3-115 (159)
8 3zqc_A MYB3; transcription-DNA 99.9 1.1E-24 3.7E-29 182.9 0.9 130 30-192 1-130 (131)
9 2dim_A Cell division cycle 5-l 99.9 8.5E-23 2.9E-27 153.3 3.4 65 106-171 5-69 (70)
10 1gv2_A C-MYB, MYB proto-oncoge 99.9 5.2E-23 1.8E-27 166.0 1.2 100 31-159 4-103 (105)
11 2k9n_A MYB24; R2R3 domain, DNA 99.9 2.9E-23 9.8E-28 168.3 -0.5 100 32-160 2-101 (107)
12 3osg_A MYB21; transcription-DN 99.8 2.3E-22 7.9E-27 167.6 0.1 100 29-158 9-108 (126)
13 1h8a_C AMV V-MYB, MYB transfor 99.8 6.2E-22 2.1E-26 165.3 2.5 101 30-159 26-126 (128)
14 1ign_A Protein (RAP1); RAP1,ye 99.8 2.9E-19 1E-23 161.4 8.0 105 106-211 4-200 (246)
15 2juh_A Telomere binding protei 99.7 6E-19 2E-23 145.2 5.1 83 105-188 12-104 (121)
16 2d9a_A B-MYB, MYB-related prot 99.7 1.6E-18 5.4E-23 126.1 5.1 56 106-162 4-59 (60)
17 1gvd_A MYB proto-oncogene prot 99.7 2.2E-18 7.4E-23 121.8 4.6 52 108-160 1-52 (52)
18 2roh_A RTBP1, telomere binding 99.7 5.7E-18 2E-22 139.5 6.8 79 105-184 26-114 (122)
19 1guu_A C-MYB, MYB proto-oncoge 99.7 3E-18 1E-22 121.0 3.7 52 108-160 1-52 (52)
20 2llk_A Cyclin-D-binding MYB-li 99.7 5.1E-18 1.7E-22 128.1 2.9 58 149-207 9-66 (73)
21 1ity_A TRF1; helix-turn-helix, 99.7 1.4E-17 4.7E-22 124.5 4.1 62 106-167 6-68 (69)
22 2din_A Cell division cycle 5-l 99.7 7.4E-17 2.5E-21 119.5 5.8 61 155-216 1-61 (66)
23 1x41_A Transcriptional adaptor 99.6 7.3E-17 2.5E-21 117.4 4.1 54 106-160 4-57 (60)
24 3sjm_A Telomeric repeat-bindin 99.6 7.3E-17 2.5E-21 118.9 3.4 57 106-162 7-64 (64)
25 2din_A Cell division cycle 5-l 99.6 5.9E-17 2E-21 120.0 2.0 58 105-165 4-61 (66)
26 2cu7_A KIAA1915 protein; nucle 99.6 3.9E-16 1.4E-20 117.5 5.0 58 157-214 3-60 (72)
27 2yum_A ZZZ3 protein, zinc fing 99.6 3E-16 1E-20 119.0 3.4 59 106-165 4-67 (75)
28 1w0t_A Telomeric repeat bindin 99.6 3.7E-16 1.3E-20 110.7 3.5 50 109-158 1-51 (53)
29 2elk_A SPCC24B10.08C protein; 99.6 5.7E-16 2E-20 111.9 4.1 52 106-157 5-56 (58)
30 2cu7_A KIAA1915 protein; nucle 99.6 4.7E-16 1.6E-20 117.1 2.9 57 105-163 4-60 (72)
31 2d9a_A B-MYB, MYB-related prot 99.6 3.8E-16 1.3E-20 113.4 2.2 54 158-211 3-57 (60)
32 1guu_A C-MYB, MYB proto-oncoge 99.6 1.1E-15 3.9E-20 107.7 4.4 50 161-210 1-51 (52)
33 2llk_A Cyclin-D-binding MYB-li 99.6 1.5E-15 5.3E-20 114.5 4.3 53 106-162 19-71 (73)
34 2dim_A Cell division cycle 5-l 99.6 9.2E-16 3.2E-20 114.8 2.8 63 158-220 4-67 (70)
35 1gvd_A MYB proto-oncogene prot 99.5 1.9E-15 6.5E-20 106.6 3.7 49 161-209 1-50 (52)
36 1ity_A TRF1; helix-turn-helix, 99.5 4.2E-15 1.4E-19 110.9 4.6 59 157-215 4-65 (69)
37 1w0t_A Telomeric repeat bindin 99.5 7.5E-15 2.6E-19 104.0 5.1 48 162-209 1-51 (53)
38 1x41_A Transcriptional adaptor 99.5 7.1E-15 2.4E-19 106.8 4.7 52 158-209 3-55 (60)
39 2ckx_A NGTRF1, telomere bindin 99.5 1.3E-14 4.3E-19 112.1 5.9 69 111-180 1-79 (83)
40 2aje_A Telomere repeat-binding 99.5 1.8E-14 6E-19 115.9 5.3 79 104-183 7-95 (105)
41 3sjm_A Telomeric repeat-bindin 99.5 2.7E-14 9.2E-19 105.1 5.2 51 161-211 9-62 (64)
42 2yum_A ZZZ3 protein, zinc fing 99.5 1.1E-14 3.8E-19 110.3 2.9 58 158-215 3-66 (75)
43 2elk_A SPCC24B10.08C protein; 99.5 4.4E-14 1.5E-18 101.9 4.8 50 159-208 5-56 (58)
44 2ltp_A Nuclear receptor corepr 99.2 8.4E-15 2.9E-19 114.7 0.0 57 155-211 8-64 (89)
45 2cqr_A RSGI RUH-043, DNAJ homo 99.4 8.1E-14 2.8E-18 105.1 4.3 55 103-158 11-68 (73)
46 2yus_A SWI/SNF-related matrix- 99.4 1.4E-13 4.7E-18 105.4 5.6 49 106-156 14-62 (79)
47 2ltp_A Nuclear receptor corepr 99.1 1.8E-14 6.1E-19 112.9 0.0 55 103-159 9-63 (89)
48 2cqr_A RSGI RUH-043, DNAJ homo 99.3 5.8E-13 2E-17 100.3 4.8 51 159-209 14-68 (73)
49 2yus_A SWI/SNF-related matrix- 99.3 1.3E-12 4.4E-17 100.0 3.3 48 160-207 15-62 (79)
50 1x58_A Hypothetical protein 49 99.2 1.1E-11 3.8E-16 89.7 5.5 49 162-210 7-58 (62)
51 2ckx_A NGTRF1, telomere bindin 99.2 1.2E-11 4.2E-16 95.3 5.5 49 164-212 1-54 (83)
52 2aje_A Telomere repeat-binding 99.2 3.3E-11 1.1E-15 96.8 6.3 53 159-211 9-66 (105)
53 2juh_A Telomere binding protei 99.1 2.2E-11 7.6E-16 100.1 4.7 55 157-211 11-70 (121)
54 2cjj_A Radialis; plant develop 99.1 4.7E-11 1.6E-15 94.0 6.0 50 162-211 7-60 (93)
55 2cjj_A Radialis; plant develop 99.1 1.6E-11 5.4E-16 96.7 3.0 48 109-157 7-57 (93)
56 1ign_A Protein (RAP1); RAP1,ye 99.1 2.8E-11 9.6E-16 109.5 3.7 55 159-213 4-64 (246)
57 2roh_A RTBP1, telomere binding 99.1 8.9E-11 3E-15 96.6 5.6 52 160-211 28-84 (122)
58 1x58_A Hypothetical protein 49 99.0 1.9E-10 6.4E-15 83.3 3.4 50 108-159 6-58 (62)
59 2eqr_A N-COR1, N-COR, nuclear 98.9 1E-09 3.5E-14 79.7 4.1 47 162-208 11-57 (61)
60 3hm5_A DNA methyltransferase 1 98.9 2.4E-09 8.2E-14 83.9 6.2 65 147-215 18-87 (93)
61 2eqr_A N-COR1, N-COR, nuclear 98.9 1.9E-09 6.3E-14 78.3 4.8 48 108-157 10-57 (61)
62 2cqq_A RSGI RUH-037, DNAJ homo 98.8 6.5E-09 2.2E-13 77.9 4.7 50 160-210 5-58 (72)
63 2cqq_A RSGI RUH-037, DNAJ homo 98.7 4.2E-09 1.4E-13 79.0 2.9 51 106-158 4-57 (72)
64 2iw5_B Protein corest, REST co 98.7 1.2E-08 4E-13 91.6 4.1 77 132-210 104-180 (235)
65 1wgx_A KIAA1903 protein; MYB D 98.6 2.7E-08 9.2E-13 74.6 3.7 48 110-158 8-58 (73)
66 1fex_A TRF2-interacting telome 98.6 2.5E-08 8.4E-13 71.9 3.1 48 110-158 2-58 (59)
67 2xag_B REST corepressor 1; ami 98.5 5.2E-08 1.8E-12 96.7 2.8 45 164-208 381-425 (482)
68 2iw5_B Protein corest, REST co 98.4 7.9E-08 2.7E-12 86.3 3.5 49 108-158 131-179 (235)
69 1wgx_A KIAA1903 protein; MYB D 98.4 1.1E-07 3.8E-12 71.2 3.5 47 163-209 8-58 (73)
70 1fex_A TRF2-interacting telome 98.3 4E-07 1.4E-11 65.5 3.7 46 163-208 2-57 (59)
71 4eef_G F-HB80.4, designed hema 98.2 4.8E-07 1.6E-11 67.4 1.9 44 110-154 20-66 (74)
72 1ofc_X ISWI protein; nuclear p 98.1 6.9E-06 2.3E-10 77.3 8.8 103 111-214 111-279 (304)
73 2yqk_A Arginine-glutamic acid 98.0 6.3E-06 2.2E-10 59.9 5.3 49 159-207 5-54 (63)
74 4eef_G F-HB80.4, designed hema 98.0 1.9E-06 6.6E-11 64.1 1.6 43 163-205 20-66 (74)
75 3hm5_A DNA methyltransferase 1 97.9 4.7E-06 1.6E-10 65.2 3.3 47 111-158 31-81 (93)
76 1ug2_A 2610100B20RIK gene prod 97.9 1.2E-05 4E-10 62.1 5.2 50 165-214 35-87 (95)
77 2lr8_A CAsp8-associated protei 97.1 1.9E-06 6.6E-11 62.9 0.0 46 165-211 16-64 (70)
78 2yqk_A Arginine-glutamic acid 97.8 1.5E-05 5.1E-10 57.9 4.4 48 106-155 5-53 (63)
79 4iej_A DNA methyltransferase 1 97.8 3.6E-05 1.2E-09 59.9 6.2 61 151-215 22-87 (93)
80 2crg_A Metastasis associated p 97.6 7.6E-05 2.6E-09 55.3 5.0 46 162-207 7-53 (70)
81 4a69_C Nuclear receptor corepr 97.6 6.5E-05 2.2E-09 58.9 4.9 45 163-207 43-87 (94)
82 2xag_B REST corepressor 1; ami 97.5 6.3E-05 2.2E-09 74.7 4.2 47 109-157 379-425 (482)
83 4a69_C Nuclear receptor corepr 97.4 0.00012 4E-09 57.4 3.8 42 111-154 44-85 (94)
84 2crg_A Metastasis associated p 97.3 0.00015 5E-09 53.8 3.7 43 111-155 9-52 (70)
85 2ebi_A DNA binding protein GT- 97.3 5E-05 1.7E-09 58.3 0.7 49 109-157 3-63 (86)
86 1ug2_A 2610100B20RIK gene prod 97.3 0.00011 3.6E-09 56.8 2.3 44 112-156 35-80 (95)
87 4b4c_A Chromodomain-helicase-D 97.1 0.0015 5.2E-08 57.7 8.9 102 109-211 6-197 (211)
88 2ebi_A DNA binding protein GT- 97.1 0.0004 1.4E-08 53.1 3.9 52 162-213 3-68 (86)
89 2lr8_A CAsp8-associated protei 96.0 0.00013 4.4E-09 53.3 0.0 45 112-158 16-62 (70)
90 2y9y_A Imitation switch protei 96.7 0.0044 1.5E-07 59.6 8.4 105 111-216 124-297 (374)
91 4iej_A DNA methyltransferase 1 96.3 0.0028 9.6E-08 49.3 3.5 50 108-158 28-81 (93)
92 4b4c_A Chromodomain-helicase-D 93.0 0.053 1.8E-06 47.7 3.1 29 111-139 135-163 (211)
93 1irz_A ARR10-B; helix-turn-hel 92.9 0.2 6.7E-06 36.2 5.4 47 162-208 6-57 (64)
94 1irz_A ARR10-B; helix-turn-hel 92.8 0.099 3.4E-06 37.8 3.8 50 107-156 4-56 (64)
95 2xb0_X Chromo domain-containin 92.5 0.068 2.3E-06 49.3 3.2 28 111-138 169-196 (270)
96 1ofc_X ISWI protein; nuclear p 91.3 0.29 1E-05 45.8 6.0 49 163-211 110-159 (304)
97 2rq5_A Protein jumonji; develo 76.9 1.6 5.6E-05 35.2 3.1 58 119-179 45-113 (121)
98 2y9y_A Imitation switch protei 75.0 1.4 4.7E-05 42.4 2.5 45 109-153 227-285 (374)
99 2xb0_X Chromo domain-containin 73.5 5.3 0.00018 36.6 6.0 48 163-210 3-55 (270)
100 2li6_A SWI/SNF chromatin-remod 60.9 2.9 9.9E-05 33.2 1.3 39 120-159 53-98 (116)
101 2jrz_A Histone demethylase jar 56.6 4.1 0.00014 32.4 1.5 41 119-159 43-93 (117)
102 1ig6_A MRF-2, modulator recogn 56.1 4.7 0.00016 31.4 1.7 41 119-159 36-87 (107)
103 1c20_A DEAD ringer protein; DN 52.7 4.7 0.00016 32.5 1.3 41 119-159 55-106 (128)
104 2cxy_A BAF250B subunit, HBAF25 50.7 5.4 0.00018 32.0 1.3 41 119-159 54-104 (125)
105 2lm1_A Lysine-specific demethy 48.0 23 0.00077 27.3 4.6 41 173-213 48-100 (107)
106 2li6_A SWI/SNF chromatin-remod 47.3 11 0.00038 29.7 2.7 41 173-213 53-101 (116)
107 2jxj_A Histone demethylase jar 47.2 5.9 0.0002 30.1 1.0 40 120-159 40-89 (96)
108 2kk0_A AT-rich interactive dom 45.9 18 0.00061 29.8 3.8 53 119-171 67-132 (145)
109 2eqy_A RBP2 like, jumonji, at 45.1 7.5 0.00026 31.1 1.3 41 119-159 45-95 (122)
110 1kkx_A Transcription regulator 44.9 21 0.00072 28.6 4.0 43 173-215 52-102 (123)
111 2o8x_A Probable RNA polymerase 44.9 22 0.00075 24.2 3.7 46 166-213 16-61 (70)
112 1kkx_A Transcription regulator 43.2 4.3 0.00015 32.7 -0.4 39 120-159 52-97 (123)
113 2lm1_A Lysine-specific demethy 42.9 7.7 0.00026 30.1 1.1 41 119-159 47-97 (107)
114 2jrz_A Histone demethylase jar 41.9 21 0.00071 28.2 3.5 40 173-212 44-95 (117)
115 1u78_A TC3 transposase, transp 41.6 1.2E+02 0.004 23.2 8.7 87 111-202 5-98 (141)
116 1ku3_A Sigma factor SIGA; heli 40.9 28 0.00096 24.3 3.8 45 166-212 11-59 (73)
117 2cxy_A BAF250B subunit, HBAF25 40.4 27 0.00091 27.8 4.0 42 173-214 55-108 (125)
118 2eqy_A RBP2 like, jumonji, at 39.7 28 0.00096 27.6 4.0 41 173-213 46-98 (122)
119 2kk0_A AT-rich interactive dom 38.7 27 0.00094 28.6 3.9 43 173-215 68-123 (145)
120 1wxp_A THO complex subunit 1; 38.6 1.3E+02 0.0045 23.0 8.6 29 172-201 19-47 (110)
121 1c20_A DEAD ringer protein; DN 36.2 44 0.0015 26.6 4.6 44 172-215 55-111 (128)
122 2jvw_A Uncharacterized protein 35.1 30 0.001 26.0 3.2 46 118-176 18-70 (88)
123 3i4p_A Transcriptional regulat 33.5 15 0.00052 30.1 1.5 43 116-160 3-45 (162)
124 2rq5_A Protein jumonji; develo 33.3 35 0.0012 27.2 3.6 78 109-212 6-98 (121)
125 2p7v_B Sigma-70, RNA polymeras 32.7 29 0.001 23.8 2.7 41 170-211 9-53 (68)
126 3hug_A RNA polymerase sigma fa 31.8 55 0.0019 23.8 4.3 43 170-213 41-83 (92)
127 2q1z_A RPOE, ECF SIGE; ECF sig 30.6 69 0.0024 25.8 5.2 42 171-213 140-181 (184)
128 1k78_A Paired box protein PAX5 28.0 1.5E+02 0.0051 23.2 6.7 67 111-181 31-106 (149)
129 3e7l_A Transcriptional regulat 27.8 26 0.0009 24.0 1.7 30 115-145 18-47 (63)
130 3cz6_A DNA-binding protein RAP 27.7 33 0.0011 29.0 2.5 25 106-130 110-142 (168)
131 2p1m_A SKP1-like protein 1A; F 27.4 35 0.0012 28.2 2.7 35 134-176 119-153 (160)
132 1x3u_A Transcriptional regulat 25.9 96 0.0033 21.4 4.6 44 165-211 16-59 (79)
133 3i4p_A Transcriptional regulat 24.4 57 0.002 26.5 3.5 43 169-212 3-46 (162)
134 3ulq_B Transcriptional regulat 23.9 99 0.0034 22.7 4.5 46 163-211 27-72 (90)
135 1or7_A Sigma-24, RNA polymeras 23.1 1.1E+02 0.0036 24.8 5.0 44 170-214 144-187 (194)
136 2yqf_A Ankyrin-1; death domain 21.7 2.7E+02 0.0092 21.1 7.1 33 167-200 14-46 (111)
137 1fse_A GERE; helix-turn-helix 21.6 1E+02 0.0036 20.7 4.0 45 164-211 10-54 (74)
138 1je8_A Nitrate/nitrite respons 21.2 1E+02 0.0035 21.9 4.0 45 164-211 20-64 (82)
139 2e1c_A Putative HTH-type trans 21.0 47 0.0016 27.5 2.3 42 116-159 27-68 (171)
140 3c57_A Two component transcrip 21.0 1.1E+02 0.0038 22.5 4.2 44 165-211 27-70 (95)
141 2k27_A Paired box protein PAX- 20.7 3.1E+02 0.011 21.5 9.4 66 111-181 24-99 (159)
142 3eyi_A Z-DNA-binding protein 1 20.5 69 0.0024 23.2 2.7 38 113-151 7-44 (72)
143 3cz6_A DNA-binding protein RAP 20.4 52 0.0018 27.8 2.4 57 118-175 64-126 (168)
144 1tty_A Sigma-A, RNA polymerase 20.3 1E+02 0.0034 22.2 3.8 41 171-212 23-67 (87)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=5.6e-40 Score=284.58 Aligned_cols=154 Identities=36% Similarity=0.603 Sum_probs=112.2
Q ss_pred hcccccccccccccccccccCCCCchhHhhhCCCCCCccceeeeeeccccchhhccccccccccCCCCCccccccCcCCc
Q 020197 30 TAAANSNVGTGRLGSSICCSHGYLPNPLLEFYPRRTRVTQFVHLRQPKLKKTEVKGRACRANRNFKSSSTTISEEDLDMR 109 (329)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~W~~Ia~~~~~r~~~~qc~~r~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (329)
..+.|+..+|+.|+.+|..++..+|..||++||+|+.. ||..||...|+ |.++
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~-qcr~Rw~~~l~--------------------------p~~~ 57 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDV-QCQHRWQKVLN--------------------------PELI 57 (159)
T ss_dssp ---------------------------------------CHHHHHHTTTC--------------------------TTCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHH-HHHHHHHHccC--------------------------CCcC
Confidence 35678899999999999999989999999999999988 99999999999 9999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCccccCcccHHHHHHHHHHHHhhCCcchhhc
Q 020197 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITLEEQLLILELHSRWGNRWSKLA 189 (329)
Q Consensus 110 kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia 189 (329)
+|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|++++.+||++|..||
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia 136 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIA 136 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHH
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999878999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH
Q 020197 190 QHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 190 ~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
+.|||||+++|++||+.++++.
T Consensus 137 ~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 137 KLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp TTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999887654
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.7e-38 Score=266.02 Aligned_cols=127 Identities=41% Similarity=0.743 Sum_probs=102.7
Q ss_pred HhhhCCCCCCccceeeeeeccccchhhccccccccccCCCCCccccccCcCCccCCCCHHHHHHHHHHHHHcCCCchhhh
Q 020197 57 LLEFYPRRTRVTQFVHLRQPKLKKTEVKGRACRANRNFKSSSTTISEEDLDMRKGPWTVEEDFKLINYIVTHGEGRWNRL 136 (329)
Q Consensus 57 Ia~~~~~r~~~~qc~~r~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~I 136 (329)
||++||+|+.. ||..||...|+ |.+++|+||+|||++|+++|.+||.++|..|
T Consensus 1 Ia~~~~~Rt~~-qC~~Rw~~~l~--------------------------p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~I 53 (128)
T 1h8a_C 1 MEAVIKNRTDV-QCQHRWQKVLN--------------------------PELNKGPWTKEEDQRVIEHVQKYGPKRWSDI 53 (128)
T ss_dssp ----------------------C--------------------------TTCCCSCCCHHHHHHHHHHHHHTCSCCHHHH
T ss_pred CccccCCCCHH-HHHHHHHHhhC--------------------------CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 78999999999 99999999999 9999999999999999999999998789999
Q ss_pred ccccCCccCchhhhhhhccccCCccccCcccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 137 ARCAGLKRTGKSCRLRWLNYLRPDVRLGKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 137 A~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
|..|+ ||++.||++||.++|+|.+++++||+|||++|++++++||++|..||+.|||||+++|++||+.++++.
T Consensus 54 a~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 54 AKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999 999999999999999999999999999999999999999999999999999999999999999888754
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=6.1e-34 Score=230.28 Aligned_cols=104 Identities=44% Similarity=0.855 Sum_probs=99.3
Q ss_pred CCccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCccccCcccHHHHHHHHHHHHhhCCcch
Q 020197 107 DMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITLEEQLLILELHSRWGNRWS 186 (329)
Q Consensus 107 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W~ 186 (329)
++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|++++.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 46899999999999999999999888999999999 99999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 187 KLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 187 ~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
.||+.|||||+++|++||+.++++.
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999998764
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=7.9e-34 Score=230.68 Aligned_cols=104 Identities=33% Similarity=0.649 Sum_probs=100.5
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCccccCcccHHHHHHHHHHHHhhCCcchhhc
Q 020197 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITLEEQLLILELHSRWGNRWSKLA 189 (329)
Q Consensus 110 kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia 189 (329)
||+||+|||++|+++|.+||.++|..||..|| +|++.||++||.++|+|.+++|+||+|||++|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHh
Q 020197 190 QHLPGRTDNEIKNYWRTRVQKQAKQ 214 (329)
Q Consensus 190 ~~lpgRt~~~~k~rw~~~l~~~~kk 214 (329)
+.|||||+++|++||..++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=1.2e-32 Score=230.08 Aligned_cols=104 Identities=36% Similarity=0.628 Sum_probs=100.8
Q ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCccccCcccHHHHHHHHHHHHhhCCcc
Q 020197 106 LDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITLEEQLLILELHSRWGNRW 185 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W 185 (329)
...++|+||+|||++|+++|.+||. +|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||++|
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 6789999999999999999999998 9999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 186 SKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 186 ~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
..||+.|+|||+.+|++||..++++.
T Consensus 85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 85 AIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988764
No 6
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=4.5e-33 Score=234.03 Aligned_cols=106 Identities=37% Similarity=0.649 Sum_probs=101.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCccccCcccHHHHHHHHHHHHhhCCcchhhc
Q 020197 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITLEEQLLILELHSRWGNRWSKLA 189 (329)
Q Consensus 110 kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia 189 (329)
||+||+|||++|+++|.+||.++|..||..|| +|++.||++||.++|+|.+++|+||+|||++|+++|.+||++|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 78999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcc
Q 020197 190 QHLPGRTDNEIKNYWRTRVQKQAKQLK 216 (329)
Q Consensus 190 ~~lpgRt~~~~k~rw~~~l~~~~kk~~ 216 (329)
..|+|||+++|++||+.++++.+....
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999988765543
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=2.1e-30 Score=224.31 Aligned_cols=112 Identities=30% Similarity=0.604 Sum_probs=66.5
Q ss_pred CCccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCccccCcccHHHHHHHHHHHHhhCC-cc
Q 020197 107 DMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITLEEQLLILELHSRWGN-RW 185 (329)
Q Consensus 107 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~-~W 185 (329)
.+++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 46789999999999999999999889999999999 99999999999999999999999999999999999999996 69
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHhccccc
Q 020197 186 SKLAQHLPGRTDNEIKNYWRTRVQKQAKQLKCDV 219 (329)
Q Consensus 186 ~~Ia~~lpgRt~~~~k~rw~~~l~~~~kk~~~~~ 219 (329)
..||..|+|||+.||++||.++|.+.+++.....
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~ 115 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 115 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCCh
Confidence 9999999999999999999999987766555443
No 8
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.89 E-value=1.1e-24 Score=182.86 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=106.2
Q ss_pred hcccccccccccccccccccCCCCchhHhhhCCCCCCccceeeeeeccccchhhccccccccccCCCCCccccccCcCCc
Q 020197 30 TAAANSNVGTGRLGSSICCSHGYLPNPLLEFYPRRTRVTQFVHLRQPKLKKTEVKGRACRANRNFKSSSTTISEEDLDMR 109 (329)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~W~~Ia~~~~~r~~~~qc~~r~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (329)
+.+.|+..+|+.|+.+|..++..+|..||.+||+|+.. ||+.||...|. |.++
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~-qcr~Rw~~~l~--------------------------p~~~ 53 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPK-QCRERWFNHLD--------------------------PAVV 53 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHH-HHHHHHHHHTS--------------------------TTCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHH-HHHHHHhhccC--------------------------cccc
Confidence 35778899999999999999989999999999999988 99999999999 9999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCccccCcccHHHHHHHHHHHHhhCCcchhhc
Q 020197 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITLEEQLLILELHSRWGNRWSKLA 189 (329)
Q Consensus 110 kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia 189 (329)
+|+||+|||++|+++|.+||. +|..||++|+ |||+.||+.||+++|++.+..+.|+.+-- ......+.+|..|+
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~~~kk~~~~~i~ 127 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEIL----LPDRSKKRKAADVP 127 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCCCC---------
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccccc----Cchhhhhhhhhhcc
Confidence 999999999999999999997 9999999999 99999999999999999999998876521 00112234577777
Q ss_pred ccC
Q 020197 190 QHL 192 (329)
Q Consensus 190 ~~l 192 (329)
+.|
T Consensus 128 k~~ 130 (131)
T 3zqc_A 128 KKL 130 (131)
T ss_dssp ---
T ss_pred hhc
Confidence 655
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.5e-23 Score=153.34 Aligned_cols=65 Identities=23% Similarity=0.545 Sum_probs=63.4
Q ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCccccCcccHHHH
Q 020197 106 LDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITLEEQ 171 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~WT~eEd 171 (329)
+.+++|+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 789999999999999999999999779999999999 99999999999999999999999999997
No 10
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.85 E-value=5.2e-23 Score=166.02 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=94.2
Q ss_pred cccccccccccccccccccCCCCchhHhhhCCCCCCccceeeeeeccccchhhccccccccccCCCCCccccccCcCCcc
Q 020197 31 AAANSNVGTGRLGSSICCSHGYLPNPLLEFYPRRTRVTQFVHLRQPKLKKTEVKGRACRANRNFKSSSTTISEEDLDMRK 110 (329)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~W~~Ia~~~~~r~~~~qc~~r~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 110 (329)
.+.|+..+|..|+.+|..++..+|..||++||+|+.. ||..||...|. |.+++
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~-qcr~Rw~~~l~--------------------------p~~~~ 56 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGK-QCRERWHNHLN--------------------------PEVKK 56 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHH-HHHHHHHHTTC--------------------------CCCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHH-HHHHHHHhccC--------------------------Ccccc
Confidence 4678889999999999999988999999999999988 99999999998 99999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCC
Q 020197 111 GPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRP 159 (329)
Q Consensus 111 g~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p 159 (329)
|+||+|||++|+++|.+||. +|..||+.|| |||+.||+.||+.+|..
T Consensus 57 ~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 57 TSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC-
T ss_pred cCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 99999999999999999997 9999999999 99999999999998874
No 11
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.85 E-value=2.9e-23 Score=168.32 Aligned_cols=100 Identities=18% Similarity=0.258 Sum_probs=93.9
Q ss_pred ccccccccccccccccccCCCCchhHhhhCCCCCCccceeeeeeccccchhhccccccccccCCCCCccccccCcCCccC
Q 020197 32 AANSNVGTGRLGSSICCSHGYLPNPLLEFYPRRTRVTQFVHLRQPKLKKTEVKGRACRANRNFKSSSTTISEEDLDMRKG 111 (329)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~W~~Ia~~~~~r~~~~qc~~r~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg 111 (329)
+.|+..+|+.|+.+|..++..+|..||++||+|+.. ||..||...|. |.+++|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~-qcr~Rw~~~L~--------------------------p~i~~~ 54 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPR-QCRERWNNYIN--------------------------PALRTD 54 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHH-HHHHHHHHHSS--------------------------SCCTTC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHH-HHHHHHHHHHc--------------------------cccccc
Confidence 467888999999999999989999999999999988 99999999999 999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCc
Q 020197 112 PWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPD 160 (329)
Q Consensus 112 ~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~ 160 (329)
+||+|||++|+++|.+||. +|..||++|+ |||+.||+.||..++...
T Consensus 55 ~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 55 PWSPEEDMLLDQKYAEYGP-KWNKISKFLK-NRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp CCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCc-CHHHHHHHCC-CCCHHHHHHHHHHHHhhH
Confidence 9999999999999999998 9999999999 999999999999887653
No 12
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.83 E-value=2.3e-22 Score=167.59 Aligned_cols=100 Identities=20% Similarity=0.272 Sum_probs=93.5
Q ss_pred hhcccccccccccccccccccCCCCchhHhhhCCCCCCccceeeeeeccccchhhccccccccccCCCCCccccccCcCC
Q 020197 29 TTAAANSNVGTGRLGSSICCSHGYLPNPLLEFYPRRTRVTQFVHLRQPKLKKTEVKGRACRANRNFKSSSTTISEEDLDM 108 (329)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~Ia~~~~~r~~~~qc~~r~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (329)
...+.|+-.+|+.|+.+|..++. +|..||+.|++|+.. ||+.||...|. |.+
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~-qcr~Rw~~~l~--------------------------p~~ 60 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNAR-QCRDRWKNYLA--------------------------PSI 60 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHH-HHHHHHHHHTS--------------------------TTS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHH-HHHHHHhhhcc--------------------------ccc
Confidence 44677888999999999999877 999999999999988 99999999999 999
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccC
Q 020197 109 RKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLR 158 (329)
Q Consensus 109 ~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~ 158 (329)
++|+||+|||++|+++|.+||. +|..||+.|+ |||+.||++||..+++
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIAKFFP-GRTDIHIKNRWVTISN 108 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTTST-TCCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 9999999999999999999996 9999999999 9999999999998764
No 13
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.83 E-value=6.2e-22 Score=165.27 Aligned_cols=101 Identities=18% Similarity=0.216 Sum_probs=95.6
Q ss_pred hcccccccccccccccccccCCCCchhHhhhCCCCCCccceeeeeeccccchhhccccccccccCCCCCccccccCcCCc
Q 020197 30 TAAANSNVGTGRLGSSICCSHGYLPNPLLEFYPRRTRVTQFVHLRQPKLKKTEVKGRACRANRNFKSSSTTISEEDLDMR 109 (329)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~W~~Ia~~~~~r~~~~qc~~r~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (329)
..+.|+..+|..|+.+|..++..+|..||++||+|+.. ||..||...|. |.++
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~-qcr~Rw~~~l~--------------------------p~~~ 78 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGK-QCRERWHNHLN--------------------------PEVK 78 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHH-HHHHHHHHTTC--------------------------SSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHH-HHHHHHHHhcc--------------------------cccc
Confidence 45789999999999999999988999999999999988 99999999998 9999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCC
Q 020197 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRP 159 (329)
Q Consensus 110 kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p 159 (329)
+|+||+|||++|+++|.+||. +|..||++|| |||+.||+.||..+|..
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHGGGST-TCCHHHHHHHHHTTTTC
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHHHHCC-CCCHHHHHHHHHHHHhc
Confidence 999999999999999999997 9999999999 99999999999998864
No 14
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.77 E-value=2.9e-19 Score=161.44 Aligned_cols=105 Identities=18% Similarity=0.290 Sum_probs=91.8
Q ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCc-----hhhhccccCCccCchhhhhhhccccCCccc------------------
Q 020197 106 LDMRKGPWTVEEDFKLINYIVTHGEGR-----WNRLARCAGLKRTGKSCRLRWLNYLRPDVR------------------ 162 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~~~v~~~g~~~-----W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k------------------ 162 (329)
..+++++||+|||++|+++|.++|..+ |.+||++|+ |||+.||++||+++|.+.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 578899999999999999999998742 999999999 99999999999999999886
Q ss_pred -----------cCcccHHHHHHHHHHHHh-h--------------------------------CC---------------
Q 020197 163 -----------LGKITLEEQLLILELHSR-W--------------------------------GN--------------- 183 (329)
Q Consensus 163 -----------~g~WT~eEd~~Ll~~v~~-~--------------------------------G~--------------- 183 (329)
+..||.|||-.|...+++ | |.
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 789999999999998876 1 11
Q ss_pred ----------cchhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 184 ----------RWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 184 ----------~W~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
.|.+||+.+|+||...+|+||..+++..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 5999999999999999999999888654
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.75 E-value=6e-19 Score=145.18 Aligned_cols=83 Identities=23% Similarity=0.401 Sum_probs=78.2
Q ss_pred CcCCccCCCCHHHHHHHHHHHHHcCCCchhhhcccc----CCccCchhhhhhhccccC-----CccccC-cccHHHHHHH
Q 020197 105 DLDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCA----GLKRTGKSCRLRWLNYLR-----PDVRLG-KITLEEQLLI 174 (329)
Q Consensus 105 ~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~----~~~Rt~~qcr~Rw~n~L~-----p~~k~g-~WT~eEd~~L 174 (329)
.+..++++||+|||+.|+++|++||.++|..|++.+ + +||+.||++||+|+|+ |.++++ +|++||+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 378899999999999999999999999999999985 6 9999999999999998 999999 9999999999
Q ss_pred HHHHHhhCCcchhh
Q 020197 175 LELHSRWGNRWSKL 188 (329)
Q Consensus 175 l~~v~~~G~~W~~I 188 (329)
++++..+|++|.+-
T Consensus 91 ~~~h~~~gn~~~~~ 104 (121)
T 2juh_A 91 LAAHAYWSQQQGKQ 104 (121)
T ss_dssp HHHHHHHHHHHCCS
T ss_pred HHHHHHHccchhcc
Confidence 99999999999873
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.6e-18 Score=126.06 Aligned_cols=56 Identities=32% Similarity=0.504 Sum_probs=53.9
Q ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCccc
Q 020197 106 LDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVR 162 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k 162 (329)
|.+++++||+|||++|+++|.+||.++|.+||+.|+ +||+.||++||.++|+|.++
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 889999999999999999999999779999999999 99999999999999999875
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.73 E-value=2.2e-18 Score=121.80 Aligned_cols=52 Identities=46% Similarity=0.896 Sum_probs=49.5
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCc
Q 020197 108 MRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPD 160 (329)
Q Consensus 108 ~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~ 160 (329)
+++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999878999999999 999999999999999984
No 18
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.72 E-value=5.7e-18 Score=139.51 Aligned_cols=79 Identities=24% Similarity=0.358 Sum_probs=73.5
Q ss_pred CcCCccCCCCHHHHHHHHHHHHHcCCCchhhhcccc----CCccCchhhhhhhcccc-----CCccccCcccHHH-HHHH
Q 020197 105 DLDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCA----GLKRTGKSCRLRWLNYL-----RPDVRLGKITLEE-QLLI 174 (329)
Q Consensus 105 ~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~----~~~Rt~~qcr~Rw~n~L-----~p~~k~g~WT~eE-d~~L 174 (329)
....++++||+|||+.|+++|++||.++|..|++.+ + +||+.||++||+|++ +|.++++.|+++| +++|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 356788999999999999999999999999999974 6 999999999999999 8999999999999 8999
Q ss_pred HHHHHhhCCc
Q 020197 175 LELHSRWGNR 184 (329)
Q Consensus 175 l~~v~~~G~~ 184 (329)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999975
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.71 E-value=3e-18 Score=120.99 Aligned_cols=52 Identities=35% Similarity=0.672 Sum_probs=48.4
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCc
Q 020197 108 MRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPD 160 (329)
Q Consensus 108 ~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~ 160 (329)
+++|+||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999889999999999 999999999999999984
No 20
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.69 E-value=5.1e-18 Score=128.08 Aligned_cols=58 Identities=28% Similarity=0.401 Sum_probs=46.8
Q ss_pred hhhhhccccCCccccCcccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHH
Q 020197 149 CRLRWLNYLRPDVRLGKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTR 207 (329)
Q Consensus 149 cr~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~ 207 (329)
.--||.++|+|.+++++||+|||++|++++++||++|..||+.| |||+++||+||+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 99999999999865
No 21
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.68 E-value=1.4e-17 Score=124.52 Aligned_cols=62 Identities=21% Similarity=0.346 Sum_probs=57.7
Q ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCchhhhccccCC-ccCchhhhhhhccccCCccccCccc
Q 020197 106 LDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGL-KRTGKSCRLRWLNYLRPDVRLGKIT 167 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~-~Rt~~qcr~Rw~n~L~p~~k~g~WT 167 (329)
+..++++||+|||++|+++|.+||.++|..||..|++ +|++.||++||.++|+|.+.++..+
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 6788999999999999999999998899999999985 8999999999999999999887653
No 22
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.4e-17 Score=119.46 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=57.9
Q ss_pred cccCCccccCcccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHHHHHhcc
Q 020197 155 NYLRPDVRLGKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQAKQLK 216 (329)
Q Consensus 155 n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~kk~~ 216 (329)
.+|+|.+++++||+|||++|++++++||.+|.+||+ ++|||+.||++||.++|++.+++..
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 379999999999999999999999999999999999 8999999999999999999988754
No 23
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=7.3e-17 Score=117.36 Aligned_cols=54 Identities=20% Similarity=0.510 Sum_probs=51.4
Q ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCc
Q 020197 106 LDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPD 160 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~ 160 (329)
+.+.+++||+|||++|+++|.+||.++|.+||++|+ +||+.||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 688999999999999999999999779999999999 999999999999999875
No 24
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.63 E-value=7.3e-17 Score=118.90 Aligned_cols=57 Identities=26% Similarity=0.397 Sum_probs=49.7
Q ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCchhhhccccC-CccCchhhhhhhccccCCccc
Q 020197 106 LDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAG-LKRTGKSCRLRWLNYLRPDVR 162 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~-~~Rt~~qcr~Rw~n~L~p~~k 162 (329)
...++++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||.|+++++++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 345789999999999999999999889999999864 389999999999999998764
No 25
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.9e-17 Score=119.97 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=53.9
Q ss_pred CcCCccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCccccCc
Q 020197 105 DLDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGK 165 (329)
Q Consensus 105 ~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~ 165 (329)
+|.+++++||+|||++|+++|++||. +|.+||+ ++ |||+.||++||.++|+|.++++.
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 38999999999999999999999998 9999999 77 89999999999999999877653
No 26
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.61 E-value=3.9e-16 Score=117.52 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=55.5
Q ss_pred cCCccccCcccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHHHHHh
Q 020197 157 LRPDVRLGKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQAKQ 214 (329)
Q Consensus 157 L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~kk 214 (329)
++|.+++++||+|||++|++++.+||++|..||.+|+|||+.||++||..++++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999988776
No 27
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3e-16 Score=119.00 Aligned_cols=59 Identities=27% Similarity=0.384 Sum_probs=55.1
Q ss_pred cCCccCCCCHHHHHHHHHHHHHcCC-----CchhhhccccCCccCchhhhhhhccccCCccccCc
Q 020197 106 LDMRKGPWTVEEDFKLINYIVTHGE-----GRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGK 165 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~~~v~~~g~-----~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~ 165 (329)
|.+++++||+|||++|+++|.+||. .+|.+||++|+ +||+.||++||+++|.+.++.|.
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999999995 69999999999 99999999999999998777664
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.59 E-value=3.7e-16 Score=110.73 Aligned_cols=50 Identities=26% Similarity=0.492 Sum_probs=46.5
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCchhhhccccCC-ccCchhhhhhhccccC
Q 020197 109 RKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGL-KRTGKSCRLRWLNYLR 158 (329)
Q Consensus 109 ~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~-~Rt~~qcr~Rw~n~L~ 158 (329)
++|+||+|||++|+++|.+||.++|..||..|++ +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 4789999999999999999998799999999985 6999999999999875
No 29
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.59 E-value=5.7e-16 Score=111.89 Aligned_cols=52 Identities=29% Similarity=0.498 Sum_probs=47.8
Q ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhcccc
Q 020197 106 LDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYL 157 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L 157 (329)
..+.+++||+|||++|+++|.+||.++|..||++|+.+||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4566889999999999999999997799999999986799999999999875
No 30
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.58 E-value=4.7e-16 Score=117.12 Aligned_cols=57 Identities=21% Similarity=0.366 Sum_probs=53.5
Q ss_pred CcCCccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCcccc
Q 020197 105 DLDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRL 163 (329)
Q Consensus 105 ~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~ 163 (329)
.|.+++++||+|||++|+++|.+||. +|..||++|+ +||+.||+.||+++|.+.++.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 38999999999999999999999998 9999999999 999999999999999876655
No 31
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=3.8e-16 Score=113.38 Aligned_cols=54 Identities=28% Similarity=0.415 Sum_probs=50.4
Q ss_pred CCccccCcccHHHHHHHHHHHHhhC-CcchhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 158 RPDVRLGKITLEEQLLILELHSRWG-NRWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 158 ~p~~k~g~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
+|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||.++|++.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 5778999999999999999999999 59999999999999999999999988654
No 32
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.57 E-value=1.1e-15 Score=107.67 Aligned_cols=50 Identities=26% Similarity=0.441 Sum_probs=46.0
Q ss_pred cccCcccHHHHHHHHHHHHhhCC-cchhhcccCCCCCHHHHHHHHHHHHHH
Q 020197 161 VRLGKITLEEQLLILELHSRWGN-RWSKLAQHLPGRTDNEIKNYWRTRVQK 210 (329)
Q Consensus 161 ~k~g~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~lpgRt~~~~k~rw~~~l~~ 210 (329)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||.++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 899999999999999999999999863
No 33
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-15 Score=114.46 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=48.0
Q ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCccc
Q 020197 106 LDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVR 162 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k 162 (329)
|++++|+||+|||++|+++|.+||. +|.+||+.| |||+.||++||+. |....+
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 9999999999999999999999998 799999999 6999999999985 544443
No 34
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.2e-16 Score=114.80 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=57.1
Q ss_pred CCccccCcccHHHHHHHHHHHHhhC-CcchhhcccCCCCCHHHHHHHHHHHHHHHHHhcccccC
Q 020197 158 RPDVRLGKITLEEQLLILELHSRWG-NRWSKLAQHLPGRTDNEIKNYWRTRVQKQAKQLKCDVN 220 (329)
Q Consensus 158 ~p~~k~g~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~kk~~~~~~ 220 (329)
.+.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||.++|++.+++......
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~e 67 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGP 67 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChH
Confidence 4678999999999999999999999 79999999999999999999999999988777655543
No 35
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.55 E-value=1.9e-15 Score=106.58 Aligned_cols=49 Identities=31% Similarity=0.651 Sum_probs=46.2
Q ss_pred cccCcccHHHHHHHHHHHHhhCC-cchhhcccCCCCCHHHHHHHHHHHHH
Q 020197 161 VRLGKITLEEQLLILELHSRWGN-RWSKLAQHLPGRTDNEIKNYWRTRVQ 209 (329)
Q Consensus 161 ~k~g~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~lpgRt~~~~k~rw~~~l~ 209 (329)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999997 69999999999999999999998875
No 36
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.53 E-value=4.2e-15 Score=110.94 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=53.8
Q ss_pred cCCccccCcccHHHHHHHHHHHHhhC-CcchhhcccCC--CCCHHHHHHHHHHHHHHHHHhc
Q 020197 157 LRPDVRLGKITLEEQLLILELHSRWG-NRWSKLAQHLP--GRTDNEIKNYWRTRVQKQAKQL 215 (329)
Q Consensus 157 L~p~~k~g~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~lp--gRt~~~~k~rw~~~l~~~~kk~ 215 (329)
.++..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++|++.+.+.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 45667899999999999999999999 69999999999 9999999999999999876554
No 37
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=7.5e-15 Score=103.97 Aligned_cols=48 Identities=27% Similarity=0.428 Sum_probs=45.7
Q ss_pred ccCcccHHHHHHHHHHHHhhC-CcchhhcccCC--CCCHHHHHHHHHHHHH
Q 020197 162 RLGKITLEEQLLILELHSRWG-NRWSKLAQHLP--GRTDNEIKNYWRTRVQ 209 (329)
Q Consensus 162 k~g~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~lp--gRt~~~~k~rw~~~l~ 209 (329)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999999 69999999999 9999999999999986
No 38
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=7.1e-15 Score=106.80 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=48.4
Q ss_pred CCccccCcccHHHHHHHHHHHHhhC-CcchhhcccCCCCCHHHHHHHHHHHHH
Q 020197 158 RPDVRLGKITLEEQLLILELHSRWG-NRWSKLAQHLPGRTDNEIKNYWRTRVQ 209 (329)
Q Consensus 158 ~p~~k~g~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~lpgRt~~~~k~rw~~~l~ 209 (329)
.+.+.+++||+|||++|+++|++|| ++|.+||++|+|||+.||++||.++|.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 3567899999999999999999999 799999999999999999999998864
No 39
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.51 E-value=1.3e-14 Score=112.12 Aligned_cols=69 Identities=25% Similarity=0.412 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCchhhhccc----cCCccCchhhhhhhcccc-----CCccccC-cccHHHHHHHHHHHHh
Q 020197 111 GPWTVEEDFKLINYIVTHGEGRWNRLARC----AGLKRTGKSCRLRWLNYL-----RPDVRLG-KITLEEQLLILELHSR 180 (329)
Q Consensus 111 g~WT~eED~~L~~~v~~~g~~~W~~IA~~----~~~~Rt~~qcr~Rw~n~L-----~p~~k~g-~WT~eEd~~Ll~~v~~ 180 (329)
++||+|||+.|+++|++||.|+|..|++. |+ +||+.||++||+|+| +|.+++| +..+++...++.+.+.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999995 77 999999999999998 6777776 7788888888888754
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.49 E-value=1.8e-14 Score=115.86 Aligned_cols=79 Identities=27% Similarity=0.505 Sum_probs=68.1
Q ss_pred cCcCCccCCCCHHHHHHHHHHHHHcCCCchhhhcccc----CCccCchhhhhhhcccc-----CCccccCcccHHHHHH-
Q 020197 104 EDLDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCA----GLKRTGKSCRLRWLNYL-----RPDVRLGKITLEEQLL- 173 (329)
Q Consensus 104 ~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~----~~~Rt~~qcr~Rw~n~L-----~p~~k~g~WT~eEd~~- 173 (329)
.....++++||+|||+.|+++|++||.++|..|++.+ + +||+.+|++||+|++ +|.+++|.=+++|-..
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 3467889999999999999999999999999999976 5 999999999999999 6899999777776655
Q ss_pred HHHHHHhhCC
Q 020197 174 ILELHSRWGN 183 (329)
Q Consensus 174 Ll~~v~~~G~ 183 (329)
++++...+|+
T Consensus 86 v~~~~~~~~~ 95 (105)
T 2aje_A 86 VLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877664
No 41
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.48 E-value=2.7e-14 Score=105.11 Aligned_cols=51 Identities=27% Similarity=0.487 Sum_probs=46.2
Q ss_pred cccCcccHHHHHHHHHHHHhhC-CcchhhcccCC--CCCHHHHHHHHHHHHHHH
Q 020197 161 VRLGKITLEEQLLILELHSRWG-NRWSKLAQHLP--GRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 161 ~k~g~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~lp--gRt~~~~k~rw~~~l~~~ 211 (329)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.||++||.++++..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4789999999999999999999 58999999865 999999999999998754
No 42
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-14 Score=110.30 Aligned_cols=58 Identities=24% Similarity=0.263 Sum_probs=53.0
Q ss_pred CCccccCcccHHHHHHHHHHHHhhC------CcchhhcccCCCCCHHHHHHHHHHHHHHHHHhc
Q 020197 158 RPDVRLGKITLEEQLLILELHSRWG------NRWSKLAQHLPGRTDNEIKNYWRTRVQKQAKQL 215 (329)
Q Consensus 158 ~p~~k~g~WT~eEd~~Ll~~v~~~G------~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~kk~ 215 (329)
+|.+.+++||+|||++|++++.+|| ++|.+||.+|+|||+.||++||.++|.+.++.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5778999999999999999999999 689999999999999999999999988765544
No 43
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=4.4e-14 Score=101.93 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=46.0
Q ss_pred CccccCcccHHHHHHHHHHHHhhC-CcchhhcccCC-CCCHHHHHHHHHHHH
Q 020197 159 PDVRLGKITLEEQLLILELHSRWG-NRWSKLAQHLP-GRTDNEIKNYWRTRV 208 (329)
Q Consensus 159 p~~k~g~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~lp-gRt~~~~k~rw~~~l 208 (329)
..+.+++||+|||++|+++|++|| ++|..||++|+ |||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346688999999999999999999 89999999999 999999999998764
No 44
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.16 E-value=8.4e-15 Score=114.72 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=53.5
Q ss_pred cccCCccccCcccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 155 NYLRPDVRLGKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 155 n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
..++|.+++++||+|||++|++++.+||++|..||..|+|||++||++||..++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 356788999999999999999999999999999999999999999999999998865
No 45
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.42 E-value=8.1e-14 Score=105.05 Aligned_cols=55 Identities=20% Similarity=0.432 Sum_probs=49.6
Q ss_pred ccCcCCccCCCCHHHHHHHHHHHHHcC---CCchhhhccccCCccCchhhhhhhccccC
Q 020197 103 EEDLDMRKGPWTVEEDFKLINYIVTHG---EGRWNRLARCAGLKRTGKSCRLRWLNYLR 158 (329)
Q Consensus 103 ~~~~~~~kg~WT~eED~~L~~~v~~~g---~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~ 158 (329)
.+.+.+.+++||+|||++|++++.+|| ..+|.+||++|| |||..||++||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 345778999999999999999999999 248999999999 9999999999998765
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=105.44 Aligned_cols=49 Identities=24% Similarity=0.484 Sum_probs=46.7
Q ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccc
Q 020197 106 LDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNY 156 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~ 156 (329)
....+++||+|||++|+++|.+|| ++|.+||++|+ +||+.||++||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 567789999999999999999999 69999999999 99999999999998
No 47
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.12 E-value=1.8e-14 Score=112.87 Aligned_cols=55 Identities=25% Similarity=0.466 Sum_probs=51.3
Q ss_pred ccCcCCccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCC
Q 020197 103 EEDLDMRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRP 159 (329)
Q Consensus 103 ~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p 159 (329)
...|.+++|+||+|||++|+++|.+||. +|..||.+|+ |||+.||++||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 3448999999999999999999999998 9999999999 99999999999999864
No 48
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.35 E-value=5.8e-13 Score=100.35 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=46.9
Q ss_pred CccccCcccHHHHHHHHHHHHhhC----CcchhhcccCCCCCHHHHHHHHHHHHH
Q 020197 159 PDVRLGKITLEEQLLILELHSRWG----NRWSKLAQHLPGRTDNEIKNYWRTRVQ 209 (329)
Q Consensus 159 p~~k~g~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~lpgRt~~~~k~rw~~~l~ 209 (329)
+.+.+++||.|||.+|++++.+|| ++|.+||++|||||..+|++||..+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 345788999999999999999999 689999999999999999999998865
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=99.99 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=44.5
Q ss_pred ccccCcccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHH
Q 020197 160 DVRLGKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTR 207 (329)
Q Consensus 160 ~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~ 207 (329)
...+++||+|||++|++++.+||++|.+||++|++||+.||++||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 346789999999999999999999999999999999999999999654
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.22 E-value=1.1e-11 Score=89.69 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=45.6
Q ss_pred ccCcccHHHHHHHHHHHHhhCCcchhhc---ccCCCCCHHHHHHHHHHHHHH
Q 020197 162 RLGKITLEEQLLILELHSRWGNRWSKLA---QHLPGRTDNEIKNYWRTRVQK 210 (329)
Q Consensus 162 k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia---~~lpgRt~~~~k~rw~~~l~~ 210 (329)
++.+||+|||+.|++.|++||.+|..|+ .++++||+-++++||+++.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 577999999999999998763
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.21 E-value=1.2e-11 Score=95.32 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=45.2
Q ss_pred CcccHHHHHHHHHHHHhhCC-cchhhccc----CCCCCHHHHHHHHHHHHHHHH
Q 020197 164 GKITLEEQLLILELHSRWGN-RWSKLAQH----LPGRTDNEIKNYWRTRVQKQA 212 (329)
Q Consensus 164 g~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~----lpgRt~~~~k~rw~~~l~~~~ 212 (329)
.+||+|||+.|+++|++||. +|..|++. |+|||+.+||+||.++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999997 99999985 899999999999999998553
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.17 E-value=3.3e-11 Score=96.80 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=47.8
Q ss_pred CccccCcccHHHHHHHHHHHHhhCC-cchhhcccC----CCCCHHHHHHHHHHHHHHH
Q 020197 159 PDVRLGKITLEEQLLILELHSRWGN-RWSKLAQHL----PGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 159 p~~k~g~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l----pgRt~~~~k~rw~~~l~~~ 211 (329)
...++++||+|||+.|+++|++||. +|..|+..+ +|||+.+|++||.++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3457899999999999999999997 999999865 8999999999999999743
No 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.15 E-value=2.2e-11 Score=100.06 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=49.8
Q ss_pred cCCccccCcccHHHHHHHHHHHHhhCC-cchhhccc----CCCCCHHHHHHHHHHHHHHH
Q 020197 157 LRPDVRLGKITLEEQLLILELHSRWGN-RWSKLAQH----LPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 157 L~p~~k~g~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~----lpgRt~~~~k~rw~~~l~~~ 211 (329)
+.+..++++||+|||+.|+++|++||. +|..|+.. |+|||+.+|++||.++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 455678999999999999999999997 99999987 49999999999999999853
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.14 E-value=4.7e-11 Score=93.98 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=45.9
Q ss_pred ccCcccHHHHHHHHHHHHhhC----CcchhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 162 RLGKITLEEQLLILELHSRWG----NRWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 162 k~g~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
..++||.|||.+|++++.+|| ++|.+||..|||||.++|++||..+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999998765
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.13 E-value=1.6e-11 Score=96.69 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=43.3
Q ss_pred ccCCCCHHHHHHHHHHHHHcC---CCchhhhccccCCccCchhhhhhhcccc
Q 020197 109 RKGPWTVEEDFKLINYIVTHG---EGRWNRLARCAGLKRTGKSCRLRWLNYL 157 (329)
Q Consensus 109 ~kg~WT~eED~~L~~~v~~~g---~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L 157 (329)
.+++||+|||++|++++.+|| ..+|.+||+.|| |||..||++||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 467899999999999999997 347999999999 999999999998864
No 56
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.10 E-value=2.8e-11 Score=109.45 Aligned_cols=55 Identities=24% Similarity=0.424 Sum_probs=48.7
Q ss_pred CccccCcccHHHHHHHHHHHHhhCCc------chhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 020197 159 PDVRLGKITLEEQLLILELHSRWGNR------WSKLAQHLPGRTDNEIKNYWRTRVQKQAK 213 (329)
Q Consensus 159 p~~k~g~WT~eEd~~Ll~~v~~~G~~------W~~Ia~~lpgRt~~~~k~rw~~~l~~~~k 213 (329)
+.+++++||+|||++|+++|.++|++ |..||+.|||||+++||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35688999999999999999999975 99999999999999999999999998765
No 57
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.09 E-value=8.9e-11 Score=96.60 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=47.2
Q ss_pred ccccCcccHHHHHHHHHHHHhhCC-cchhhccc----CCCCCHHHHHHHHHHHHHHH
Q 020197 160 DVRLGKITLEEQLLILELHSRWGN-RWSKLAQH----LPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 160 ~~k~g~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~----lpgRt~~~~k~rw~~~l~~~ 211 (329)
..++++||+|||+.|+++|++||. +|..|++. |+|||+.+|++||.++++..
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 447889999999999999999997 99999986 48999999999999999754
No 58
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.99 E-value=1.9e-10 Score=83.26 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=44.8
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCCchhhhc---cccCCccCchhhhhhhccccCC
Q 020197 108 MRKGPWTVEEDFKLINYIVTHGEGRWNRLA---RCAGLKRTGKSCRLRWLNYLRP 159 (329)
Q Consensus 108 ~~kg~WT~eED~~L~~~v~~~g~~~W~~IA---~~~~~~Rt~~qcr~Rw~n~L~p 159 (329)
-++++||+|||+.|++.|++||. +|..|+ .+++ +||...+++||+++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence 46789999999999999999998 999999 4666 99999999999987653
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1e-09 Score=79.68 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=43.6
Q ss_pred ccCcccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHH
Q 020197 162 RLGKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRV 208 (329)
Q Consensus 162 k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l 208 (329)
..++||+||++++++++.+||.+|..||..|++||..+|..+|...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999997654
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.88 E-value=2.4e-09 Score=83.87 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=59.2
Q ss_pred hhhhhhhccccCCccccCcccHHHHHHHHHHHHhhCCcchhhcccC-----CCCCHHHHHHHHHHHHHHHHHhc
Q 020197 147 KSCRLRWLNYLRPDVRLGKITLEEQLLILELHSRWGNRWSKLAQHL-----PGRTDNEIKNYWRTRVQKQAKQL 215 (329)
Q Consensus 147 ~qcr~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l-----pgRt~~~~k~rw~~~l~~~~kk~ 215 (329)
.=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.++..
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3467899999976 89999999999999999999999999988 58999999999999999887765
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.9e-09 Score=78.31 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=43.4
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhcccc
Q 020197 108 MRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYL 157 (329)
Q Consensus 108 ~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L 157 (329)
...++||+|||+++++++.+||. +|..||.+|+ +||..||.++|....
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 35578999999999999999996 9999999999 999999999997543
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.75 E-value=6.5e-09 Score=77.94 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=44.7
Q ss_pred ccccCcccHHHHHHHHHHHHhhC----CcchhhcccCCCCCHHHHHHHHHHHHHH
Q 020197 160 DVRLGKITLEEQLLILELHSRWG----NRWSKLAQHLPGRTDNEIKNYWRTRVQK 210 (329)
Q Consensus 160 ~~k~g~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~lpgRt~~~~k~rw~~~l~~ 210 (329)
..+.+.||.|||.+|.+++++|+ ++|.+||..+ |||..+|++||+.+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34678999999999999999997 5799999998 99999999999888654
No 63
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.73 E-value=4.2e-09 Score=78.97 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=43.9
Q ss_pred cCCccCCCCHHHHHHHHHHHHHcC---CCchhhhccccCCccCchhhhhhhccccC
Q 020197 106 LDMRKGPWTVEEDFKLINYIVTHG---EGRWNRLARCAGLKRTGKSCRLRWLNYLR 158 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~~~v~~~g---~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~ 158 (329)
.....+.||.|||++|.+++.+|+ ..+|.+||+.| |||..+|+.||..+.+
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 345678899999999999999997 34799999997 5999999999987654
No 64
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.66 E-value=1.2e-08 Score=91.60 Aligned_cols=77 Identities=12% Similarity=0.153 Sum_probs=55.8
Q ss_pred chhhhccccCCccCchhhhhhhccccCCccccCcccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHH
Q 020197 132 RWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQK 210 (329)
Q Consensus 132 ~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~ 210 (329)
+|+++-..|- ...... .++++..-......++||+||++++++++.+||++|..||+.|++||..||+++|..++++
T Consensus 104 ~~kQ~~~~L~-~~~~~~-Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 104 NIKQTNSALK-EKLDGG-IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHHHHHHHHH-HHSTTT-TGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHH-HHHHhh-cccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4555555543 233221 2344432112234669999999999999999999999999999999999999999877653
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.59 E-value=2.7e-08 Score=74.56 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=43.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCC---CchhhhccccCCccCchhhhhhhccccC
Q 020197 110 KGPWTVEEDFKLINYIVTHGE---GRWNRLARCAGLKRTGKSCRLRWLNYLR 158 (329)
Q Consensus 110 kg~WT~eED~~L~~~v~~~g~---~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~ 158 (329)
...||.|||++|..++..|+. ++|..||..|| +||..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 357999999999999999975 47999999999 9999999999998764
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.58 E-value=2.5e-08 Score=71.92 Aligned_cols=48 Identities=21% Similarity=0.482 Sum_probs=43.3
Q ss_pred cCCCCHHHHHHHHHHHHHc--------CCCchhhhcc-ccCCccCchhhhhhhccccC
Q 020197 110 KGPWTVEEDFKLINYIVTH--------GEGRWNRLAR-CAGLKRTGKSCRLRWLNYLR 158 (329)
Q Consensus 110 kg~WT~eED~~L~~~v~~~--------g~~~W~~IA~-~~~~~Rt~~qcr~Rw~n~L~ 158 (329)
+.+||+|||+.|+++|.+| |+.-|+++|+ .++ ++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 4579999999999999999 6657999999 788 9999999999998874
No 67
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.45 E-value=5.2e-08 Score=96.67 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=41.7
Q ss_pred CcccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHH
Q 020197 164 GKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRV 208 (329)
Q Consensus 164 g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l 208 (329)
..||+||.+++++++.+||..|..||..|..||..||+++|..+.
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999986543
No 68
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.44 E-value=7.9e-08 Score=86.26 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=45.3
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccC
Q 020197 108 MRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLR 158 (329)
Q Consensus 108 ~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~ 158 (329)
...++||+||++++++++.+||. +|..||+.|+ +||..||+.+|+++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45678999999999999999996 9999999999 9999999999998765
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.43 E-value=1.1e-07 Score=71.17 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=42.6
Q ss_pred cCcccHHHHHHHHHHHHhhCC----cchhhcccCCCCCHHHHHHHHHHHHH
Q 020197 163 LGKITLEEQLLILELHSRWGN----RWSKLAQHLPGRTDNEIKNYWRTRVQ 209 (329)
Q Consensus 163 ~g~WT~eEd~~Ll~~v~~~G~----~W~~Ia~~lpgRt~~~~k~rw~~~l~ 209 (329)
...||.+|+.+|.+++..|+. +|.+||..|+|||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 458999999999999999984 69999999999999999999987743
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.30 E-value=4e-07 Score=65.52 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=41.6
Q ss_pred cCcccHHHHHHHHHHHHhh--------CCc-chhhcc-cCCCCCHHHHHHHHHHHH
Q 020197 163 LGKITLEEQLLILELHSRW--------GNR-WSKLAQ-HLPGRTDNEIKNYWRTRV 208 (329)
Q Consensus 163 ~g~WT~eEd~~Ll~~v~~~--------G~~-W~~Ia~-~lpgRt~~~~k~rw~~~l 208 (329)
+.+||+|||..|++.|.++ |++ |.++++ .+|++|-.++|+||...|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999 554 999999 899999999999998765
No 71
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.18 E-value=4.8e-07 Score=67.36 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=39.2
Q ss_pred cCCCCHHHHHHHHHHHHHcCCC---chhhhccccCCccCchhhhhhhc
Q 020197 110 KGPWTVEEDFKLINYIVTHGEG---RWNRLARCAGLKRTGKSCRLRWL 154 (329)
Q Consensus 110 kg~WT~eED~~L~~~v~~~g~~---~W~~IA~~~~~~Rt~~qcr~Rw~ 154 (329)
.+.||.||+++|..++..|+.+ +|.+||+.|| |||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4579999999999999999753 7999999999 999999999995
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.11 E-value=6.9e-06 Score=77.30 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhh-------hhcccc--------------------------
Q 020197 111 GPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRL-------RWLNYL-------------------------- 157 (329)
Q Consensus 111 g~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~-------Rw~n~L-------------------------- 157 (329)
+.||..+...++.++.+||..+|..||..|+ |.|...++. ||..+-
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999 899888753 221100
Q ss_pred -----------------CCccccCcccHHHHHHHHHHHHhhCC----cchhhcc------------cCCCCCHHHHHHHH
Q 020197 158 -----------------RPDVRLGKITLEEQLLILELHSRWGN----RWSKLAQ------------HLPGRTDNEIKNYW 204 (329)
Q Consensus 158 -----------------~p~~k~g~WT~eEd~~Ll~~v~~~G~----~W~~Ia~------------~lpgRt~~~~k~rw 204 (329)
.+.-+...||++||..||-.+.+||- .|..|.. .+..||+.+|..|-
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 01223458999999999999999995 4999952 34679999999999
Q ss_pred HHHHHHHHHh
Q 020197 205 RTRVQKQAKQ 214 (329)
Q Consensus 205 ~~~l~~~~kk 214 (329)
..+++-..+.
T Consensus 270 ~tLi~~iekE 279 (304)
T 1ofc_X 270 NTLITLIERE 279 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999765443
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=6.3e-06 Score=59.93 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=44.2
Q ss_pred CccccCcccHHHHHHHHHHHHhhCCcchhhcc-cCCCCCHHHHHHHHHHH
Q 020197 159 PDVRLGKITLEEQLLILELHSRWGNRWSKLAQ-HLPGRTDNEIKNYWRTR 207 (329)
Q Consensus 159 p~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~-~lpgRt~~~~k~rw~~~ 207 (329)
|.+....||+||..+..+++.+||..|..|++ .|++||..+|...|..-
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 56677899999999999999999999999999 58999999999888643
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.97 E-value=1.9e-06 Score=64.09 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=38.6
Q ss_pred cCcccHHHHHHHHHHHHhhCC----cchhhcccCCCCCHHHHHHHHH
Q 020197 163 LGKITLEEQLLILELHSRWGN----RWSKLAQHLPGRTDNEIKNYWR 205 (329)
Q Consensus 163 ~g~WT~eEd~~Ll~~v~~~G~----~W~~Ia~~lpgRt~~~~k~rw~ 205 (329)
...||.||+++|..+++.|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 6999999999999999999884
No 75
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.94 E-value=4.7e-06 Score=65.18 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCchhhhccccC----CccCchhhhhhhccccC
Q 020197 111 GPWTVEEDFKLINYIVTHGEGRWNRLARCAG----LKRTGKSCRLRWLNYLR 158 (329)
Q Consensus 111 g~WT~eED~~L~~~v~~~g~~~W~~IA~~~~----~~Rt~~qcr~Rw~n~L~ 158 (329)
++||.||++.|++|+++|+. +|..|+..+. .+||..++++||..+..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999997 9999999993 27999999999987654
No 76
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.92 E-value=1.2e-05 Score=62.08 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=45.9
Q ss_pred cccHHHHHHHHHHHHhhCC---cchhhcccCCCCCHHHHHHHHHHHHHHHHHh
Q 020197 165 KITLEEQLLILELHSRWGN---RWSKLAQHLPGRTDNEIKNYWRTRVQKQAKQ 214 (329)
Q Consensus 165 ~WT~eEd~~Ll~~v~~~G~---~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~kk 214 (329)
-||.|||+.||..+++.|. .|..||+.|.+|+.+|+++||..+++-+.+.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999996 6999999999999999999999999876543
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.09 E-value=1.9e-06 Score=62.94 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=42.8
Q ss_pred cccHHHHHHHHHHHHhhCC---cchhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 165 KITLEEQLLILELHSRWGN---RWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 165 ~WT~eEd~~Ll~~v~~~G~---~W~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
.||.|||..||..+++-|. -|..||+.| +|+++|+.+||..+++-+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 6999999999999999997 599999999 999999999999988754
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=1.5e-05 Score=57.92 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=43.7
Q ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCchhhhcc-ccCCccCchhhhhhhcc
Q 020197 106 LDMRKGPWTVEEDFKLINYIVTHGEGRWNRLAR-CAGLKRTGKSCRLRWLN 155 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~-~~~~~Rt~~qcr~Rw~n 155 (329)
|.+....||+||-++..+.+.+||. +|..|++ .|+ .|+..||.+-|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 6777889999999999999999997 9999998 589 9999999988754
No 79
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.80 E-value=3.6e-05 Score=59.94 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=51.8
Q ss_pred hhhccccCCccccCcccHHHHHHHHHHHHhhCCcchhhcccC-----CCCCHHHHHHHHHHHHHHHHHhc
Q 020197 151 LRWLNYLRPDVRLGKITLEEQLLILELHSRWGNRWSKLAQHL-----PGRTDNEIKNYWRTRVQKQAKQL 215 (329)
Q Consensus 151 ~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l-----pgRt~~~~k~rw~~~l~~~~kk~ 215 (329)
+.|..+|. ...||.||-..|++++++|+-+|..|+..+ .+||-.++|.||..+.++.++..
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34555554 368999999999999999999999998866 37999999999999999887654
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.59 E-value=7.6e-05 Score=55.30 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=41.7
Q ss_pred ccCcccHHHHHHHHHHHHhhCCcchhhcc-cCCCCCHHHHHHHHHHH
Q 020197 162 RLGKITLEEQLLILELHSRWGNRWSKLAQ-HLPGRTDNEIKNYWRTR 207 (329)
Q Consensus 162 k~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~-~lpgRt~~~~k~rw~~~ 207 (329)
....||+||..+..+++.+||..|..|++ .|++||..+|...|..-
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 35689999999999999999999999999 59999999999988743
No 81
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.59 E-value=6.5e-05 Score=58.89 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=41.8
Q ss_pred cCcccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHH
Q 020197 163 LGKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTR 207 (329)
Q Consensus 163 ~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~ 207 (329)
...||+||.+++.+++..||.+|..|+..|++||..+|-..|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 568999999999999999999999999999999999999888644
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.47 E-value=6.3e-05 Score=74.69 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=43.1
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhcccc
Q 020197 109 RKGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYL 157 (329)
Q Consensus 109 ~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L 157 (329)
...+||.||-+++++++.+||. +|..||+.++ .||..||+..|.++-
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4579999999999999999996 9999999999 899999999997653
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.37 E-value=0.00012 Score=57.44 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhc
Q 020197 111 GPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWL 154 (329)
Q Consensus 111 g~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~ 154 (329)
..||+||.++..+....||. +|..||..++ +||..+|.+.|.
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHh
Confidence 56999999999999999996 9999999999 999999998775
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.33 E-value=0.00015 Score=53.78 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCchhhhcc-ccCCccCchhhhhhhcc
Q 020197 111 GPWTVEEDFKLINYIVTHGEGRWNRLAR-CAGLKRTGKSCRLRWLN 155 (329)
Q Consensus 111 g~WT~eED~~L~~~v~~~g~~~W~~IA~-~~~~~Rt~~qcr~Rw~n 155 (329)
..||+||-++..+.+.+||. +|..|++ .|+ +|+..+|.+-|..
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 46999999999999999997 9999999 599 9999999988763
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.29 E-value=5e-05 Score=58.28 Aligned_cols=49 Identities=24% Similarity=0.536 Sum_probs=40.2
Q ss_pred ccCCCCHHHHHHHHHHHHHcCC---------Cchhhhcccc---CCccCchhhhhhhcccc
Q 020197 109 RKGPWTVEEDFKLINYIVTHGE---------GRWNRLARCA---GLKRTGKSCRLRWLNYL 157 (329)
Q Consensus 109 ~kg~WT~eED~~L~~~v~~~g~---------~~W~~IA~~~---~~~Rt~~qcr~Rw~n~L 157 (329)
+...||.+|-.+|+++...+.. .-|..||..| |..||+.||+.+|.|+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4567999999999999976421 1599999987 36799999999998765
No 86
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.26 E-value=0.00011 Score=56.75 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHcCC--CchhhhccccCCccCchhhhhhhccc
Q 020197 112 PWTVEEDFKLINYIVTHGE--GRWNRLARCAGLKRTGKSCRLRWLNY 156 (329)
Q Consensus 112 ~WT~eED~~L~~~v~~~g~--~~W~~IA~~~~~~Rt~~qcr~Rw~n~ 156 (329)
-||.|||..|+...++.|. ..|..||+.++ +|+..|+.+||+.+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 5999999999999999975 36999999999 99999999999754
No 87
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.13 E-value=0.0015 Score=57.75 Aligned_cols=102 Identities=13% Similarity=0.059 Sum_probs=69.9
Q ss_pred ccCCCCHHHHHHHHHHHHHcC--CCchhhhccc--cCCccCchhhhhhhc-------cccC-------------------
Q 020197 109 RKGPWTVEEDFKLINYIVTHG--EGRWNRLARC--AGLKRTGKSCRLRWL-------NYLR------------------- 158 (329)
Q Consensus 109 ~kg~WT~eED~~L~~~v~~~g--~~~W~~IA~~--~~~~Rt~~qcr~Rw~-------n~L~------------------- 158 (329)
....||..|=..|+.++.+|| .++|..|++. +. +++...+..-+. ..++
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP 84 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence 345699999999999999999 5689999864 44 566655442111 0000
Q ss_pred ---------------------------------------------CccccCcccHHHHHHHHHHHHhhC-Ccchhhcc--
Q 020197 159 ---------------------------------------------PDVRLGKITLEEQLLILELHSRWG-NRWSKLAQ-- 190 (329)
Q Consensus 159 ---------------------------------------------p~~k~g~WT~eEd~~Ll~~v~~~G-~~W~~Ia~-- 190 (329)
+..-...||++||..||..+.+|| ++|.+|-.
T Consensus 85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 000122599999999999999999 88999943
Q ss_pred c--C----------CCCCHHHHHHHHHHHHHHH
Q 020197 191 H--L----------PGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 191 ~--l----------pgRt~~~~k~rw~~~l~~~ 211 (329)
. + ..++...+..|-+.+|+-.
T Consensus 165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred hcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 1 1 1245667899988877744
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.08 E-value=0.0004 Score=53.13 Aligned_cols=52 Identities=13% Similarity=0.323 Sum_probs=43.0
Q ss_pred ccCcccHHHHHHHHHHHHhhCC----------cchhhcccC----CCCCHHHHHHHHHHHHHHHHH
Q 020197 162 RLGKITLEEQLLILELHSRWGN----------RWSKLAQHL----PGRTDNEIKNYWRTRVQKQAK 213 (329)
Q Consensus 162 k~g~WT~eEd~~Ll~~v~~~G~----------~W~~Ia~~l----pgRt~~~~k~rw~~~l~~~~k 213 (329)
+...||.+|-..||++..++.. .|..||..| -.||+.||+.+|.++.+...+
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4568999999999999976431 399999876 369999999999999887643
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.00 E-value=0.00013 Score=53.33 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHcCC--CchhhhccccCCccCchhhhhhhccccC
Q 020197 112 PWTVEEDFKLINYIVTHGE--GRWNRLARCAGLKRTGKSCRLRWLNYLR 158 (329)
Q Consensus 112 ~WT~eED~~L~~~v~~~g~--~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~ 158 (329)
.||.|||..|+..+++.|. .-|..||+.+ +|++.|+.+||+.++.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999986 3699999988 4999999999987654
No 90
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.68 E-value=0.0044 Score=59.60 Aligned_cols=105 Identities=20% Similarity=0.205 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhcccc---------------------------------
Q 020197 111 GPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYL--------------------------------- 157 (329)
Q Consensus 111 g~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L--------------------------------- 157 (329)
+.||.-+=..++.++.+||..+-..||..|+.+.|...++ +|.+.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888999999999888999999996467877765 222111
Q ss_pred ---------CC---------cc--ccCcccHHHHHHHHHHHHhhCC----cchhhccc------------CCCCCHHHHH
Q 020197 158 ---------RP---------DV--RLGKITLEEQLLILELHSRWGN----RWSKLAQH------------LPGRTDNEIK 201 (329)
Q Consensus 158 ---------~p---------~~--k~g~WT~eEd~~Ll~~v~~~G~----~W~~Ia~~------------lpgRt~~~~k 201 (329)
+| .- +...||++||..||-++.+||- .|..|-.. +..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 11 11 3447999999999999999994 59999321 4679999999
Q ss_pred HHHHHHHHHHHHhcc
Q 020197 202 NYWRTRVQKQAKQLK 216 (329)
Q Consensus 202 ~rw~~~l~~~~kk~~ 216 (329)
.|-..+++-..+...
T Consensus 283 rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 283 RRGNTLLQCLEKEFN 297 (374)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999987655543
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.27 E-value=0.0028 Score=49.27 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=42.9
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCCchhhhccccC----CccCchhhhhhhccccC
Q 020197 108 MRKGPWTVEEDFKLINYIVTHGEGRWNRLARCAG----LKRTGKSCRLRWLNYLR 158 (329)
Q Consensus 108 ~~kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~----~~Rt~~qcr~Rw~n~L~ 158 (329)
++...||.||...|.+|+++|.. +|-.|+.... ..|+..+.++||..+..
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 34467999999999999999997 9999998874 26999999999987643
No 92
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.96 E-value=0.053 Score=47.65 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCchhhhccc
Q 020197 111 GPWTVEEDFKLINYIVTHGEGRWNRLARC 139 (329)
Q Consensus 111 g~WT~eED~~L~~~v~~~g~~~W~~IA~~ 139 (329)
..||.+||..|+..|.+||.++|..|-.-
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 45999999999999999999999999653
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.93 E-value=0.2 Score=36.20 Aligned_cols=47 Identities=13% Similarity=-0.047 Sum_probs=39.0
Q ss_pred ccCcccHHHHHHHHHHHHhhCCc---chhhcccC--CCCCHHHHHHHHHHHH
Q 020197 162 RLGKITLEEQLLILELHSRWGNR---WSKLAQHL--PGRTDNEIKNYWRTRV 208 (329)
Q Consensus 162 k~g~WT~eEd~~Ll~~v~~~G~~---W~~Ia~~l--pgRt~~~~k~rw~~~l 208 (329)
.+-.||+|..+.+++++.++|.. ++.|.+.| +|.|..+|+.+...+.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999954 77887764 7999999988776553
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.84 E-value=0.099 Score=37.77 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=39.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHcCCCc--hhhhccccC-CccCchhhhhhhccc
Q 020197 107 DMRKGPWTVEEDFKLINYIVTHGEGR--WNRLARCAG-LKRTGKSCRLRWLNY 156 (329)
Q Consensus 107 ~~~kg~WT~eED~~L~~~v~~~g~~~--W~~IA~~~~-~~Rt~~qcr~Rw~n~ 156 (329)
...+-.||+|..+..+++|.+.|..+ +..|.+.|+ .|.|..++..+.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34556799999999999999999522 789999887 367888888776554
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=92.52 E-value=0.068 Score=49.34 Aligned_cols=28 Identities=36% Similarity=0.657 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCchhhhcc
Q 020197 111 GPWTVEEDFKLINYIVTHGEGRWNRLAR 138 (329)
Q Consensus 111 g~WT~eED~~L~~~v~~~g~~~W~~IA~ 138 (329)
-.|+.+||..|+..|.+||.|+|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999999999964
No 96
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.25 E-value=0.29 Score=45.79 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=43.4
Q ss_pred cCcccHHHHHHHHHHHHhhCC-cchhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 163 LGKITLEEQLLILELHSRWGN-RWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 163 ~g~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
.+.||..+...++.++.+||. .|..||..|+|+|...|+.++..+.++.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 458999999999999999995 6999999999999999988777776654
No 97
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=76.87 E-value=1.6 Score=35.18 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCC-------CchhhhccccCCccC----chhhhhhhccccCCccccCcccHHHHHHHHHHHH
Q 020197 119 FKLINYIVTHGE-------GRWNRLARCAGLKRT----GKSCRLRWLNYLRPDVRLGKITLEEQLLILELHS 179 (329)
Q Consensus 119 ~~L~~~v~~~g~-------~~W~~IA~~~~~~Rt----~~qcr~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~ 179 (329)
-+|..+|.+.|- +.|.+||..|+...+ ....+..|.++|.+- ...+++|...|...|.
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 367777888763 379999999985443 346788899999863 3478888888887664
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=74.97 E-value=1.4 Score=42.37 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=34.5
Q ss_pred ccCCCCHHHHHHHHHHHHHcCC---CchhhhccccC-----------CccCchhhhhhh
Q 020197 109 RKGPWTVEEDFKLINYIVTHGE---GRWNRLARCAG-----------LKRTGKSCRLRW 153 (329)
Q Consensus 109 ~kg~WT~eED~~L~~~v~~~g~---~~W~~IA~~~~-----------~~Rt~~qcr~Rw 153 (329)
++..||.+||..|+-++.+||. +.|.+|-..+. ..||+..+..|-
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc 285 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRG 285 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 4567999999999999999999 89999955432 146666655554
No 99
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=73.54 E-value=5.3 Score=36.64 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=41.9
Q ss_pred cCcccHHHHHHHHHHHHhhC---Ccchhhcc--cCCCCCHHHHHHHHHHHHHH
Q 020197 163 LGKITLEEQLLILELHSRWG---NRWSKLAQ--HLPGRTDNEIKNYWRTRVQK 210 (329)
Q Consensus 163 ~g~WT~eEd~~Ll~~v~~~G---~~W~~Ia~--~lpgRt~~~~k~rw~~~l~~ 210 (329)
++.||+-|-..|++.+.+|| .+|..|+. .|+.++...++.-|+.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 47999975 57899999999888877753
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=60.86 E-value=2.9 Score=33.22 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=31.2
Q ss_pred HHHHHHHHcCC-------CchhhhccccCCccCchhhhhhhccccCC
Q 020197 120 KLINYIVTHGE-------GRWNRLARCAGLKRTGKSCRLRWLNYLRP 159 (329)
Q Consensus 120 ~L~~~v~~~g~-------~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p 159 (329)
.|..+|.+.|- +.|.+||..|+... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 68888888863 37999999998443 78889999988875
No 101
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=56.62 E-value=4.1 Score=32.38 Aligned_cols=41 Identities=24% Similarity=0.467 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCC-------CchhhhccccCCccC---chhhhhhhccccCC
Q 020197 119 FKLINYIVTHGE-------GRWNRLARCAGLKRT---GKSCRLRWLNYLRP 159 (329)
Q Consensus 119 ~~L~~~v~~~g~-------~~W~~IA~~~~~~Rt---~~qcr~Rw~n~L~p 159 (329)
-+|..+|.+.|- +.|.+||..|+...+ +.+.+..|.++|.|
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 368888888873 379999999984432 45677888888764
No 102
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=56.11 E-value=4.7 Score=31.43 Aligned_cols=41 Identities=12% Similarity=0.278 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCC-------CchhhhccccCCccC----chhhhhhhccccCC
Q 020197 119 FKLINYIVTHGE-------GRWNRLARCAGLKRT----GKSCRLRWLNYLRP 159 (329)
Q Consensus 119 ~~L~~~v~~~g~-------~~W~~IA~~~~~~Rt----~~qcr~Rw~n~L~p 159 (329)
-.|..+|.+.|- +.|.+||..|+...+ +.+.+..|.++|.+
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 367777887763 379999999984332 35778888888876
No 103
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=52.72 E-value=4.7 Score=32.53 Aligned_cols=41 Identities=22% Similarity=0.576 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCC-------CchhhhccccCCccC----chhhhhhhccccCC
Q 020197 119 FKLINYIVTHGE-------GRWNRLARCAGLKRT----GKSCRLRWLNYLRP 159 (329)
Q Consensus 119 ~~L~~~v~~~g~-------~~W~~IA~~~~~~Rt----~~qcr~Rw~n~L~p 159 (329)
-+|..+|.+.|- +.|.+||..|+...+ +.+.+..|.++|.|
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 367788888873 379999999984443 45678888888865
No 104
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=50.69 E-value=5.4 Score=32.05 Aligned_cols=41 Identities=22% Similarity=0.466 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCC-------CchhhhccccCCccC---chhhhhhhccccCC
Q 020197 119 FKLINYIVTHGE-------GRWNRLARCAGLKRT---GKSCRLRWLNYLRP 159 (329)
Q Consensus 119 ~~L~~~v~~~g~-------~~W~~IA~~~~~~Rt---~~qcr~Rw~n~L~p 159 (329)
-+|..+|.+.|- +.|.+||..|+...+ +.+++..|.++|.+
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 367788888763 279999999985442 45677788877754
No 105
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=47.97 E-value=23 Score=27.30 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=29.0
Q ss_pred HHHHHHHhhCC--------cchhhcccCCCC-C---HHHHHHHHHHHHHHHHH
Q 020197 173 LILELHSRWGN--------RWSKLAQHLPGR-T---DNEIKNYWRTRVQKQAK 213 (329)
Q Consensus 173 ~Ll~~v~~~G~--------~W~~Ia~~lpgR-t---~~~~k~rw~~~l~~~~k 213 (329)
.|..+|.+.|+ .|.+|+..|.-- + ...++..|..+|-+.-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 46667777773 699999988222 2 46789999988877643
No 106
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=47.31 E-value=11 Score=29.71 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=30.9
Q ss_pred HHHHHHHhhCC--------cchhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 020197 173 LILELHSRWGN--------RWSKLAQHLPGRTDNEIKNYWRTRVQKQAK 213 (329)
Q Consensus 173 ~Ll~~v~~~G~--------~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~k 213 (329)
.|..+|.+.|+ .|..|+..|.--....++..|..+|-+.-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 101 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 101 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 46777777774 699999987333378899999999877654
No 107
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=47.19 E-value=5.9 Score=30.11 Aligned_cols=40 Identities=18% Similarity=0.406 Sum_probs=28.6
Q ss_pred HHHHHHHHcCC-------CchhhhccccCCccC---chhhhhhhccccCC
Q 020197 120 KLINYIVTHGE-------GRWNRLARCAGLKRT---GKSCRLRWLNYLRP 159 (329)
Q Consensus 120 ~L~~~v~~~g~-------~~W~~IA~~~~~~Rt---~~qcr~Rw~n~L~p 159 (329)
.|..+|.+.|- +.|.+||..|+...+ +.+.+..|.++|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 57777777752 379999999984332 45677888888764
No 108
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=45.89 E-value=18 Score=29.79 Aligned_cols=53 Identities=21% Similarity=0.393 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCC-------CchhhhccccCCccC----chhhhhhhccccCC--ccccCcccHHHH
Q 020197 119 FKLINYIVTHGE-------GRWNRLARCAGLKRT----GKSCRLRWLNYLRP--DVRLGKITLEEQ 171 (329)
Q Consensus 119 ~~L~~~v~~~g~-------~~W~~IA~~~~~~Rt----~~qcr~Rw~n~L~p--~~k~g~WT~eEd 171 (329)
-+|..+|.+.|- ..|.+||..|+...+ +.+++..|.++|.| ...+|.=.++|-
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~ 132 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNEL 132 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 367778887763 379999999984332 45678889888876 233444444443
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=45.14 E-value=7.5 Score=31.10 Aligned_cols=41 Identities=24% Similarity=0.535 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCC-------CchhhhccccCCccC---chhhhhhhccccCC
Q 020197 119 FKLINYIVTHGE-------GRWNRLARCAGLKRT---GKSCRLRWLNYLRP 159 (329)
Q Consensus 119 ~~L~~~v~~~g~-------~~W~~IA~~~~~~Rt---~~qcr~Rw~n~L~p 159 (329)
-+|..+|.+.|- +.|.+||..|+...+ +.+.+..|.++|.|
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 367788888763 379999999984332 34667778777754
No 110
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=44.92 E-value=21 Score=28.56 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=31.7
Q ss_pred HHHHHHHhhCC--------cchhhcccCCCCCHHHHHHHHHHHHHHHHHhc
Q 020197 173 LILELHSRWGN--------RWSKLAQHLPGRTDNEIKNYWRTRVQKQAKQL 215 (329)
Q Consensus 173 ~Ll~~v~~~G~--------~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~kk~ 215 (329)
+|..+|.+.|+ .|.+|+..|.--....++..|..+|-+.-.-.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~~~ 102 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYERHM 102 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHHHH
Confidence 36666666663 59999997733338899999999998876543
No 111
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=44.91 E-value=22 Score=24.15 Aligned_cols=46 Identities=17% Similarity=0.085 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 020197 166 ITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQAK 213 (329)
Q Consensus 166 WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~k 213 (329)
+++ .+..++.+.-..|-.+.+||..+ |-+...++.+....+++..+
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHC
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 444 44455556557788999999999 88999998887777665543
No 112
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=43.20 E-value=4.3 Score=32.72 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=29.2
Q ss_pred HHHHHHHHcCC-------CchhhhccccCCccCchhhhhhhccccCC
Q 020197 120 KLINYIVTHGE-------GRWNRLARCAGLKRTGKSCRLRWLNYLRP 159 (329)
Q Consensus 120 ~L~~~v~~~g~-------~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p 159 (329)
+|..+|.+.|- +.|.+||..|+... +...+..|.++|.|
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCCh-HHHHHHHHHHHHHH
Confidence 57777777763 37999999998444 77788888877754
No 113
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=42.93 E-value=7.7 Score=30.07 Aligned_cols=41 Identities=17% Similarity=0.451 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCC-------CchhhhccccCCccC---chhhhhhhccccCC
Q 020197 119 FKLINYIVTHGE-------GRWNRLARCAGLKRT---GKSCRLRWLNYLRP 159 (329)
Q Consensus 119 ~~L~~~v~~~g~-------~~W~~IA~~~~~~Rt---~~qcr~Rw~n~L~p 159 (329)
-.|..+|.+.|. +.|.+||..|+...+ +.+.+..|.++|.|
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 367777887763 379999999984332 45667777777654
No 114
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=41.93 E-value=21 Score=28.20 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=28.9
Q ss_pred HHHHHHHhhCC--------cchhhcccCCCC--C--HHHHHHHHHHHHHHHH
Q 020197 173 LILELHSRWGN--------RWSKLAQHLPGR--T--DNEIKNYWRTRVQKQA 212 (329)
Q Consensus 173 ~Ll~~v~~~G~--------~W~~Ia~~lpgR--t--~~~~k~rw~~~l~~~~ 212 (329)
+|..+|.+.|+ .|.+|+..|.-- + ...++..|..+|-..-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE 95 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYE 95 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 47777777773 699999987221 1 4578999988887654
No 115
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=41.63 E-value=1.2e+02 Score=23.25 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhh---hhhcccc--CCccccCcccHHHHHHHHHHHHhhCCcc
Q 020197 111 GPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCR---LRWLNYL--RPDVRLGKITLEEQLLILELHSRWGNRW 185 (329)
Q Consensus 111 g~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr---~Rw~n~L--~p~~k~g~WT~eEd~~Ll~~v~~~G~~W 185 (329)
...|.++-..++.++ ..|. .-.+||+.+| .+...++ .+|..+- ...-+....+++++..|+++...-+-.-
T Consensus 5 ~~~s~~~r~~i~~~~-~~G~-s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~ 80 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLNV-SLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA 80 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTTC-CHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCH
T ss_pred ccCCHHHHHHHHHHH-HcCC-CHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCH
Confidence 457888888888877 4564 7899999998 4444333 2332221 1111223578888888887733222234
Q ss_pred hhhcccCCC--CCHHHHHH
Q 020197 186 SKLAQHLPG--RTDNEIKN 202 (329)
Q Consensus 186 ~~Ia~~lpg--Rt~~~~k~ 202 (329)
.+|+..+ | -+...|..
T Consensus 81 ~~i~~~l-g~~~s~~tV~r 98 (141)
T 1u78_A 81 RDIRNEL-QLSASKRTILN 98 (141)
T ss_dssp HHHHHHT-TCCSCHHHHHH
T ss_pred HHHHHHH-CCCccHHHHHH
Confidence 5677766 4 45555543
No 116
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=40.95 E-value=28 Score=24.28 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHHHh----hCCcchhhcccCCCCCHHHHHHHHHHHHHHHH
Q 020197 166 ITLEEQLLILELHSR----WGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQA 212 (329)
Q Consensus 166 WT~eEd~~Ll~~v~~----~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~ 212 (329)
.++.|- .++.+.-- .|..+.+||..+ |-+...|+.+....+++..
T Consensus 11 L~~~er-~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREA-MVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHH-HHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 344444 44444443 567899999999 8999999988777766554
No 117
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=40.38 E-value=27 Score=27.84 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=29.5
Q ss_pred HHHHHHHhhCC--------cchhhcccCCC-C---CHHHHHHHHHHHHHHHHHh
Q 020197 173 LILELHSRWGN--------RWSKLAQHLPG-R---TDNEIKNYWRTRVQKQAKQ 214 (329)
Q Consensus 173 ~Ll~~v~~~G~--------~W~~Ia~~lpg-R---t~~~~k~rw~~~l~~~~kk 214 (329)
+|..+|.+.|+ .|.+|+..|.- . ....++..|..+|-..-..
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 46777777773 69999998722 2 2457889998888776443
No 118
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.71 E-value=28 Score=27.64 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHhhCC--------cchhhcccCCC--CC--HHHHHHHHHHHHHHHHH
Q 020197 173 LILELHSRWGN--------RWSKLAQHLPG--RT--DNEIKNYWRTRVQKQAK 213 (329)
Q Consensus 173 ~Ll~~v~~~G~--------~W~~Ia~~lpg--Rt--~~~~k~rw~~~l~~~~k 213 (329)
+|..+|.+.|+ .|.+|+..|.- -+ ...+|..|..+|-..-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 46777777774 69999998722 12 35788888888876643
No 119
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=38.70 E-value=27 Score=28.61 Aligned_cols=43 Identities=12% Similarity=0.270 Sum_probs=31.1
Q ss_pred HHHHHHHhhCC--------cchhhcccC--CCC---CHHHHHHHHHHHHHHHHHhc
Q 020197 173 LILELHSRWGN--------RWSKLAQHL--PGR---TDNEIKNYWRTRVQKQAKQL 215 (329)
Q Consensus 173 ~Ll~~v~~~G~--------~W~~Ia~~l--pgR---t~~~~k~rw~~~l~~~~kk~ 215 (329)
+|..+|.+.|+ .|.+|+..| +.. ....++..|..+|-.+-...
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~ 123 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEK 123 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 46777777774 699999987 332 25678999999988765443
No 120
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=38.59 E-value=1.3e+02 Score=22.99 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=21.4
Q ss_pred HHHHHHHHhhCCcchhhcccCCCCCHHHHH
Q 020197 172 LLILELHSRWGNRWSKLAQHLPGRTDNEIK 201 (329)
Q Consensus 172 ~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k 201 (329)
..|..+....|..|..+|.+| |=+..+|.
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~ 47 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIR 47 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHH
Confidence 345556677799999999998 66666653
No 121
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=36.16 E-value=44 Score=26.63 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCC--------cchhhcccC--CCC---CHHHHHHHHHHHHHHHHHhc
Q 020197 172 LLILELHSRWGN--------RWSKLAQHL--PGR---TDNEIKNYWRTRVQKQAKQL 215 (329)
Q Consensus 172 ~~Ll~~v~~~G~--------~W~~Ia~~l--pgR---t~~~~k~rw~~~l~~~~kk~ 215 (329)
-+|..+|.+.|+ .|.+|+..| +.. ....++..|..+|.+.-...
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~ 111 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEK 111 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 457777888874 699999987 322 25678999999998765443
No 122
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=35.08 E-value=30 Score=26.01 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCcc-------ccCcccHHHHHHHHH
Q 020197 118 DFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDV-------RLGKITLEEQLLILE 176 (329)
Q Consensus 118 D~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~-------k~g~WT~eEd~~Ll~ 176 (329)
+.+|.++|..|| |...++.+. =| |.. .+|++ ++.+|-.+.-+.|.-
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-I~----CF~-----~~PSikSSLKFLRKTpWAR~KVE~lYL 70 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-IN----CFK-----KDPSIKSSLKFLRKTDWARERVENIYL 70 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-SS----STT-----SSCCHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-cc----cCC-----CCCchHHHHHHHhcCHhHHHHHHHHHH
Confidence 468999999998 999998876 22 221 24443 578998887766544
No 123
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=33.54 E-value=15 Score=30.15 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCc
Q 020197 116 EEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPD 160 (329)
Q Consensus 116 eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~ 160 (329)
+-|.+|+.++++.|.-.|.+||+.+| =+...|+.|..+..+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 46888999999888889999999998 68888888887665443
No 124
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=33.32 E-value=35 Score=27.20 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=51.7
Q ss_pred ccCCCCHHHH--HHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCCccccCcccHHHHHHHHHHHHhhCC---
Q 020197 109 RKGPWTVEED--FKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITLEEQLLILELHSRWGN--- 183 (329)
Q Consensus 109 ~kg~WT~eED--~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~WT~eEd~~Ll~~v~~~G~--- 183 (329)
-+..|.+.+. +.|.+.+++.|. ....|. .++ ||.-. =-+|..+|.+.|+
T Consensus 6 ~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P-~i~-gk~lD-----------------------L~~Ly~~V~~~GG~~~ 59 (121)
T 2rq5_A 6 LGRRWGPNVQRLACIKKHLRSQGI-TMDELP-LIG-GCELD-----------------------LACFFRLINEMGGMQQ 59 (121)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTC-CCSSCC-EET-TEECC-----------------------HHHHHHHHHHTTSHHH
T ss_pred hhHhcCCcHHHHHHHHHHHHHcCC-CCCCCC-cCC-CEecc-----------------------HHHHHHHHHHcCcHHH
Confidence 3456888776 557777777786 555554 344 44432 2347778888874
Q ss_pred -----cchhhcccC--CCC---CHHHHHHHHHHHHHHHH
Q 020197 184 -----RWSKLAQHL--PGR---TDNEIKNYWRTRVQKQA 212 (329)
Q Consensus 184 -----~W~~Ia~~l--pgR---t~~~~k~rw~~~l~~~~ 212 (329)
.|.+|+..| |.- ....++..|..+|-..-
T Consensus 60 Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 60 VTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred hcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 699999987 332 24578999999888764
No 125
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=32.75 E-value=29 Score=23.80 Aligned_cols=41 Identities=10% Similarity=0.146 Sum_probs=28.8
Q ss_pred HHHHHHHHHH----hhCCcchhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 170 EQLLILELHS----RWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 170 Ed~~Ll~~v~----~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
.+..++.+.- ..|..+.+||+.+ |-+...++.+....+++.
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3344444443 2467899999999 899999988776665544
No 126
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=31.77 E-value=55 Score=23.84 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 020197 170 EQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQAK 213 (329)
Q Consensus 170 Ed~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~k 213 (329)
.+..++.+....|-.-.+||+.+ |-+...|+.+....+++..+
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 34445555556677899999999 89999999888777665544
No 127
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=30.64 E-value=69 Score=25.80 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 020197 171 QLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQAK 213 (329)
Q Consensus 171 d~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~k 213 (329)
+..++.+....|-...+||+.+ |-+...++.+....+++..+
T Consensus 140 ~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 140 QRALIERAFFGDLTHRELAAET-GLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp HHHHHHHHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 3444555555678899999999 88999999988877766543
No 128
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=27.97 E-value=1.5e+02 Score=23.19 Aligned_cols=67 Identities=15% Similarity=0.087 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhh---hhhcc--ccCCccc----cCcccHHHHHHHHHHHHhh
Q 020197 111 GPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCR---LRWLN--YLRPDVR----LGKITLEEQLLILELHSRW 181 (329)
Q Consensus 111 g~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr---~Rw~n--~L~p~~k----~g~WT~eEd~~Ll~~v~~~ 181 (329)
...|.|+-..++.++. .|. ...+||+.++ .+...++ .+|.. .+.+..+ ....++++++.|++++.+.
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 106 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQN 106 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 4689999888888884 564 7899999998 3333332 33322 1222222 2357888888888887654
No 129
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=27.75 E-value=26 Score=24.05 Aligned_cols=30 Identities=13% Similarity=0.013 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCCchhhhccccCCccC
Q 020197 115 VEEDFKLINYIVTHGEGRWNRLARCAGLKRT 145 (329)
Q Consensus 115 ~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt 145 (329)
.-|.+.|.+++..++ +++.+.|+.+|..|+
T Consensus 18 ~~E~~~i~~aL~~~~-gn~~~aA~~LGisr~ 47 (63)
T 3e7l_A 18 EFEKIFIEEKLREYD-YDLKRTAEEIGIDLS 47 (63)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHHCcCHH
Confidence 357788899999998 499999999996554
No 130
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=27.67 E-value=33 Score=29.03 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=19.4
Q ss_pred cCCccCCCCHHHHHHHH--------HHHHHcCC
Q 020197 106 LDMRKGPWTVEEDFKLI--------NYIVTHGE 130 (329)
Q Consensus 106 ~~~~kg~WT~eED~~L~--------~~v~~~g~ 130 (329)
|....|-||+|+|+.|. +++++||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 67889999999998775 55666653
No 131
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=27.45 E-value=35 Score=28.17 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=27.7
Q ss_pred hhhccccCCccCchhhhhhhccccCCccccCcccHHHHHHHHH
Q 020197 134 NRLARCAGLKRTGKSCRLRWLNYLRPDVRLGKITLEEQLLILE 176 (329)
Q Consensus 134 ~~IA~~~~~~Rt~~qcr~Rw~n~L~p~~k~g~WT~eEd~~Ll~ 176 (329)
..||..+. |+|..+||.-|. + ...+|+||++.+.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 57888888 999999999873 2 33589999987655
No 132
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=25.90 E-value=96 Score=21.36 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=31.6
Q ss_pred cccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 165 KITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 165 ~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
.+++.|-+.| .++ ..|..-.+||..+ |-+...++.+...++++.
T Consensus 16 ~L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 16 TLSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HHCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3566665555 444 6677899999999 889999988776666543
No 133
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=24.41 E-value=57 Score=26.54 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhCC-cchhhcccCCCCCHHHHHHHHHHHHHHHH
Q 020197 169 EEQLLILELHSRWGN-RWSKLAQHLPGRTDNEIKNYWRTRVQKQA 212 (329)
Q Consensus 169 eEd~~Ll~~v~~~G~-~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~ 212 (329)
+-|.+|+++.++.|. .|.+||+.+ |=+...|+.|++.+.+..+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 567888888877774 699999999 9999999999999888765
No 134
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=23.90 E-value=99 Score=22.72 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=34.6
Q ss_pred cCcccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 163 LGKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 163 ~g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+...++++.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4467887777665544 788899999999 889999988887776654
No 135
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=23.09 E-value=1.1e+02 Score=24.81 Aligned_cols=44 Identities=7% Similarity=0.074 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHHHHHh
Q 020197 170 EQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQAKQ 214 (329)
Q Consensus 170 Ed~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~kk 214 (329)
.+..++.+....|-...+||+.+ |-+...++.+....+++..+.
T Consensus 144 ~~r~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 144 DLRMAITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHH
Confidence 33444555455677899999999 899999999887777665444
No 136
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=21.68 E-value=2.7e+02 Score=21.14 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHH
Q 020197 167 TLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEI 200 (329)
Q Consensus 167 T~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~ 200 (329)
++.-+..|..+....|..|..+|..| |=+..+|
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I 46 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDI 46 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 56667778888889999999999998 7666655
No 137
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=21.58 E-value=1e+02 Score=20.73 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=33.6
Q ss_pred CcccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 164 GKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 164 g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
..+|+.|-+.|.. + ..|..-.+||..+ |-+...++.+...++++.
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 4577777766555 4 6677899999999 889999988777666544
No 138
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=21.17 E-value=1e+02 Score=21.92 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=33.2
Q ss_pred CcccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 164 GKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 164 g~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
...|+.|-+.|.- + ..|..-.+||+.+ |-+...++.+...++++.
T Consensus 20 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 20 NQLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GGSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3567777666554 4 5788899999999 889999988776665543
No 139
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=21.02 E-value=47 Score=27.52 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccccCC
Q 020197 116 EEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYLRP 159 (329)
Q Consensus 116 eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~L~p 159 (329)
+-|..|+.++.+.|...+.+||+.++ -+...|+.|.....+.
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 55677888888888779999999998 5777888877655443
No 140
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=20.96 E-value=1.1e+02 Score=22.46 Aligned_cols=44 Identities=20% Similarity=0.171 Sum_probs=33.2
Q ss_pred cccHHHHHHHHHHHHhhCCcchhhcccCCCCCHHHHHHHHHHHHHHH
Q 020197 165 KITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQ 211 (329)
Q Consensus 165 ~WT~eEd~~Ll~~v~~~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~ 211 (329)
..|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+...++++.
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666665554 4 6788889999999 889999988777766654
No 141
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=20.68 E-value=3.1e+02 Score=21.55 Aligned_cols=66 Identities=15% Similarity=0.080 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhhhhccc------cCCccc----cCcccHHHHHHHHHHHHh
Q 020197 111 GPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNY------LRPDVR----LGKITLEEQLLILELHSR 180 (329)
Q Consensus 111 g~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~Rw~n~------L~p~~k----~g~WT~eEd~~Ll~~v~~ 180 (329)
...|.|+-..++.++. .|. ...+||+.++ .+...+ .||.+. +.+..+ ....++++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688898888888874 564 7899999998 333333 334332 222211 235788888888888765
Q ss_pred h
Q 020197 181 W 181 (329)
Q Consensus 181 ~ 181 (329)
.
T Consensus 99 ~ 99 (159)
T 2k27_A 99 N 99 (159)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=20.46 E-value=69 Score=23.21 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHcCCCchhhhccccCCccCchhhhh
Q 020197 113 WTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRL 151 (329)
Q Consensus 113 WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~qcr~ 151 (329)
.|+..+++++.+.+..|+..=-.||+.+| -|+++++--
T Consensus 7 ls~~~ee~I~~fL~~~Gp~~AL~IAK~LG-lktAK~VNp 44 (72)
T 3eyi_A 7 FSQQREEDIYRFLKDNGPQRALVIAQALG-MRTAKDVNR 44 (72)
T ss_dssp CSSHHHHHHHHHHHHHCSEEHHHHHHHTT-CCSGGGTHH
T ss_pred hhhhhHHHHHHHHHHcCCchHHHHHHHhC-cchhhhcCH
Confidence 45555778899999999988889999999 899998743
No 143
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=20.36 E-value=52 Score=27.79 Aligned_cols=57 Identities=9% Similarity=0.017 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCc--hhhhccccCCccCch---hhhhhhccccC-CccccCcccHHHHHHHH
Q 020197 118 DFKLINYIVTHGEGR--WNRLARCAGLKRTGK---SCRLRWLNYLR-PDVRLGKITLEEQLLIL 175 (329)
Q Consensus 118 D~~L~~~v~~~g~~~--W~~IA~~~~~~Rt~~---qcr~Rw~n~L~-p~~k~g~WT~eEd~~Ll 175 (329)
+.++..+..+.|..+ =..|-..+- +.+.. ++.+.|..-.. |.-..|-||+|+|+.|.
T Consensus 64 ~~Lv~~l~~e~Gi~~~fs~~Ii~ALs-~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 64 EKLVQDLCDETGIRKNFSTSILTCLS-GDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHHHHCBCHHHHHHHHHHTT-TCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccHHHHHHHhc-CCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 345555556667532 122222332 23322 45555554444 44578999999999875
No 144
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=20.28 E-value=1e+02 Score=22.18 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=28.9
Q ss_pred HHHHHHHHHh----hCCcchhhcccCCCCCHHHHHHHHHHHHHHHH
Q 020197 171 QLLILELHSR----WGNRWSKLAQHLPGRTDNEIKNYWRTRVQKQA 212 (329)
Q Consensus 171 d~~Ll~~v~~----~G~~W~~Ia~~lpgRt~~~~k~rw~~~l~~~~ 212 (329)
+..++.+.-- .|-.+.+||..+ |-+...|+.+....+++..
T Consensus 23 er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 23 EAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 3444444443 467899999999 8999999887766665543
Done!