Query 020198
Match_columns 329
No_of_seqs 274 out of 1382
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 13:16:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 100.0 4.4E-34 1.5E-38 280.5 -7.4 266 10-304 97-400 (428)
2 2hbj_A Exosome complex exonucl 100.0 5E-32 1.7E-36 265.4 -3.5 244 10-283 74-336 (410)
3 1yt3_A Ribonuclease D, RNAse D 99.9 3.8E-30 1.3E-34 249.4 -7.7 252 27-304 2-284 (375)
4 2e6m_A Werner syndrome ATP-dep 99.9 4.1E-27 1.4E-31 209.8 -1.1 183 26-228 15-207 (208)
5 1vk0_A Hypothetical protein; h 99.9 7.7E-26 2.6E-30 201.9 2.8 167 29-214 22-205 (206)
6 3cym_A Uncharacterized protein 99.9 2.8E-27 9.7E-32 233.5 -10.1 229 29-283 19-257 (440)
7 3pv8_A DNA polymerase I; DNA p 99.7 6E-18 2.1E-22 172.2 5.3 157 50-226 30-191 (592)
8 2kfn_A Klenow fragment of DNA 99.7 7.8E-18 2.7E-22 172.3 1.7 183 27-225 6-203 (605)
9 1x9m_A DNA polymerase; DNA plo 99.5 1E-14 3.4E-19 151.5 6.7 158 52-222 2-189 (698)
10 4dfk_A DNA polymerase I, therm 99.2 2E-12 6.9E-17 130.2 0.7 127 50-226 11-139 (540)
11 3v9w_A Ribonuclease T; DEDD nu 98.2 1.4E-07 4.8E-12 84.8 0.2 160 31-227 21-232 (235)
12 1bgx_T TAQ DNA polymerase; DNA 98.2 2.2E-07 7.4E-12 98.0 1.2 125 50-226 305-431 (832)
13 1wlj_A Interferon stimulated g 96.1 0.0019 6.5E-08 55.7 2.2 148 49-226 5-179 (189)
14 2p1j_A POLIII, DNA polymerase 95.8 0.0029 1E-07 54.3 2.0 135 47-220 10-180 (186)
15 2f96_A Ribonuclease T; RNAse, 95.6 0.0028 9.6E-08 56.0 0.9 87 102-223 126-220 (224)
16 3mxm_B Three prime repair exon 94.6 0.0096 3.3E-07 53.4 1.4 102 90-217 104-216 (242)
17 1dtj_A RNA-binding neurooncolo 94.4 0.0036 1.2E-07 45.8 -1.6 36 276-311 6-41 (76)
18 2ctm_A Vigilin; K homology typ 94.2 0.0092 3.1E-07 45.9 0.3 41 270-310 14-54 (95)
19 2opv_A KHSRP protein; KH domai 94.0 0.0073 2.5E-07 45.3 -0.7 36 275-310 16-51 (85)
20 1vig_A Vigilin; RNA-binding pr 93.9 0.0047 1.6E-07 44.8 -1.8 37 275-311 7-43 (71)
21 1we8_A Tudor and KH domain con 93.9 0.0048 1.7E-07 48.2 -1.8 49 273-321 15-66 (104)
22 1zzk_A Heterogeneous nuclear r 93.9 0.008 2.7E-07 44.8 -0.6 37 274-310 8-44 (82)
23 2axy_A Poly(RC)-binding protei 93.7 0.0028 9.5E-08 46.3 -3.4 48 274-322 6-53 (73)
24 2ctl_A Vigilin; K homology typ 93.4 0.013 4.6E-07 45.1 -0.1 38 273-310 17-54 (97)
25 1x4m_A FAR upstream element bi 93.4 0.0074 2.5E-07 46.2 -1.6 50 272-321 14-66 (94)
26 1wvn_A Poly(RC)-binding protei 93.3 0.0061 2.1E-07 45.4 -2.2 48 274-321 7-55 (82)
27 2p2r_A Poly(RC)-binding protei 92.9 0.004 1.4E-07 45.7 -3.7 48 274-321 6-54 (76)
28 2ctk_A Vigilin; K homology typ 92.8 0.0071 2.4E-07 47.3 -2.6 48 273-320 17-64 (104)
29 3u3y_B Three prime repair exon 92.6 0.029 1E-06 52.4 0.9 101 91-217 105-216 (314)
30 1ec6_A RNA-binding protein NOV 92.6 0.005 1.7E-07 46.4 -3.7 36 276-311 6-41 (87)
31 2hh2_A KH-type splicing regula 92.3 0.016 5.5E-07 45.4 -1.1 37 275-311 9-45 (107)
32 1x4n_A FAR upstream element bi 91.7 0.0099 3.4E-07 45.3 -2.9 51 271-321 13-64 (92)
33 2gui_A DNA polymerase III epsi 91.6 0.029 9.8E-07 48.1 -0.5 92 90-216 85-185 (194)
34 2cte_A Vigilin; K homology typ 91.2 0.026 9E-07 43.1 -1.0 39 272-310 16-54 (94)
35 2jvz_A KH type-splicing, FAR u 91.1 0.033 1.1E-06 46.4 -0.5 46 276-321 5-53 (164)
36 1j5k_A Heterogeneous nuclear r 91.0 0.011 3.9E-07 44.7 -3.2 38 273-310 14-51 (89)
37 2dgr_A Ring finger and KH doma 90.8 0.024 8.3E-07 42.4 -1.4 47 273-321 10-56 (83)
38 2hh3_A KH-type splicing regula 90.0 0.028 9.7E-07 44.1 -1.8 47 275-321 13-60 (106)
39 2ctj_A Vigilin; K homology typ 88.7 0.037 1.3E-06 42.5 -2.0 51 270-320 14-65 (95)
40 3krm_A Insulin-like growth fac 88.1 0.035 1.2E-06 46.3 -2.7 46 276-321 6-53 (163)
41 2jzx_A Poly(RC)-binding protei 87.0 0.027 9.2E-07 46.9 -4.1 47 274-321 6-52 (160)
42 2cpq_A FragIle X mental retard 86.9 0.035 1.2E-06 42.4 -3.0 37 273-309 15-52 (91)
43 1y97_A Three prime repair exon 86.6 0.17 5.9E-06 44.5 0.8 102 91-218 100-212 (238)
44 2anr_A Neuro-oncological ventr 86.1 0.039 1.3E-06 46.8 -3.6 50 272-321 5-58 (178)
45 2jvz_A KH type-splicing, FAR u 85.6 0.094 3.2E-06 43.5 -1.4 37 275-311 93-129 (164)
46 1j4w_A FUSE binding protein; s 84.2 0.047 1.6E-06 46.1 -3.9 46 276-321 6-52 (174)
47 3krm_A Insulin-like growth fac 84.2 0.14 4.6E-06 42.7 -1.0 35 276-310 88-122 (163)
48 2qxf_A Exodeoxyribonuclease I; 82.9 1.3 4.3E-05 43.7 5.1 98 91-215 85-200 (482)
49 1j4w_A FUSE binding protein; s 82.7 0.14 4.8E-06 43.2 -1.6 38 274-311 105-142 (174)
50 2anr_A Neuro-oncological ventr 78.9 0.16 5.3E-06 43.0 -2.6 38 273-310 104-141 (178)
51 2jzx_A Poly(RC)-binding protei 75.4 0.16 5.6E-06 42.0 -3.4 37 274-310 90-126 (160)
52 1k1g_A SF1-BO isoform; splicin 74.4 0.64 2.2E-05 37.7 0.0 37 274-310 8-50 (131)
53 1w0h_A 3'-5' exonuclease ERI1; 68.2 0.89 3.1E-05 38.7 -0.5 95 91-217 89-196 (204)
54 2qnd_A FMR1 protein; KH domain 67.7 0.47 1.6E-05 38.9 -2.2 32 275-306 6-37 (144)
55 3ikm_A DNA polymerase subunit 66.5 1.8 6.2E-05 46.4 1.3 108 103-218 195-349 (1172)
56 2xri_A ERI1 exoribonuclease 3; 63.7 3.1 0.00011 36.1 2.2 90 90-214 107-212 (224)
57 1zbh_A 3'-5' exonuclease ERI1; 59.3 4.3 0.00015 37.0 2.4 103 90-225 156-272 (299)
58 2qnd_A FMR1 protein; KH domain 58.8 0.56 1.9E-05 38.4 -3.4 37 275-311 69-106 (144)
59 1zbu_A ERI-1 homolog, 3'-5' ex 57.5 4.6 0.00016 37.9 2.3 102 90-224 206-321 (349)
60 1qht_A Protein (DNA polymerase 52.6 18 0.00063 37.5 6.0 149 48-214 134-328 (775)
61 3u1k_A Polyribonucleotide nucl 47.8 1.2 4.1E-05 45.3 -3.7 35 275-309 569-603 (630)
62 2ctf_A Vigilin; K homology typ 47.7 2.5 8.5E-05 32.5 -1.1 36 273-308 27-63 (102)
63 2bl5_A MGC83862 protein, quaki 46.9 2.4 8.2E-05 34.7 -1.4 30 283-313 18-47 (140)
64 2e3u_A PH-DIM2P, hypothetical 46.3 1.2 4E-05 39.3 -3.6 35 275-309 36-70 (219)
65 2gzo_A UPF0301 protein SO3346; 46.0 6.1 0.00021 34.0 1.0 22 302-324 68-89 (195)
66 1tua_A Hypothetical protein AP 41.9 2.5 8.4E-05 36.4 -2.2 28 283-310 108-135 (191)
67 2e3u_A PH-DIM2P, hypothetical 41.0 2.6 8.9E-05 37.0 -2.2 27 284-310 140-166 (219)
68 2yqr_A KIAA0907 protein; struc 37.0 2.9 9.8E-05 33.2 -2.4 29 282-310 28-56 (119)
69 4aid_A Polyribonucleotide nucl 36.4 7.4 0.00025 40.2 0.0 34 276-309 573-606 (726)
70 3n89_A Defective in GERM LINE 35.6 6.1 0.00021 37.5 -0.7 43 267-309 24-68 (376)
71 3cg7_A CRN-4, cell death-relat 29.4 7.6 0.00026 35.6 -1.2 97 91-216 99-209 (308)
72 2do8_A UPF0301 protein HD_1794 28.1 6 0.00021 33.8 -2.0 22 302-324 68-89 (188)
73 2haf_A Putative translation re 25.5 7.5 0.00026 33.9 -1.9 43 281-324 47-104 (211)
74 2ew0_A Hypothetical protein ac 24.7 13 0.00045 31.8 -0.5 21 303-324 66-86 (192)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.97 E-value=4.4e-34 Score=280.52 Aligned_cols=266 Identities=19% Similarity=0.223 Sum_probs=203.9
Q ss_pred cccCCCCCCCCCCCCcccEEEEeCCCCCCccccCCCcccceEEeeecCccccc-cCCceeEEEeecCCeeEEEecccchH
Q 020198 10 HIPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGE 88 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~i~vV~t~~~L~~~~l~~~~~~~~~Ia~D~E~~~~~-~~g~l~llQLa~~~~~~liD~~~l~~ 88 (329)
..|+++.|.+.. +|.+|+|.+++.+ +++. +...+.+|||+|+.+.. +++++|+|||++++++|+||+..++.
T Consensus 97 ~~~~~~~p~~~~-----~y~~I~t~e~L~~-~l~~-L~~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~~lidpl~l~~ 169 (428)
T 3saf_A 97 PQPQLYRPIEET-----PCHFISSLDELVE-LNEK-LLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRS 169 (428)
T ss_dssp CCCCCCCCGGGS-----CEEEECSHHHHHH-HHHH-HTTCSEEEEEEEEECTTCSSCEEEEEEEECSSCEEEEETTTTGG
T ss_pred CCCCCCCCCCCC-----CcEEECCHHHHHH-HHHH-HhcCCeEEEEEEecCCCCCCCeEEEEEEEeCCcEEEEEeccchh
Confidence 345566666555 8999999999997 8876 56678999999998875 78899999999988999999988753
Q ss_pred HHHHhccccccccceeeeeccccCccchhheecceeecccchhHHHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCcc
Q 020198 89 TVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168 (329)
Q Consensus 89 ~~~~~L~~lLed~~i~KV~hd~k~Dl~~L~~~~Gi~l~~vfDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l 168 (329)
.+..|+++|+|+++.||+||+|+|+.+|++.+|+.+.++||||+|+|+++++ ..||+.|++ +|||+++
T Consensus 170 -~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~---------~~gL~~Lv~--~~Lg~~l 237 (428)
T 3saf_A 170 -DMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLG---------RHSLDHLLK--LYCNVDS 237 (428)
T ss_dssp -GGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCS---------CCSHHHHHH--HHHCCCC
T ss_pred -hHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCC---------CCCHHHHHH--HHcCCCC
Confidence 3578999999999999999999999999768999999999999999999864 257999999 9999999
Q ss_pred chhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHhhhhcch-----heeecce--eeeeeeeecCCC
Q 020198 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW-----YLAVRGA--LYCRCFCINEND 241 (329)
Q Consensus 169 ~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~-----~~~~~~~--~~~r~~~~~~~~ 241 (329)
++ .+ ..++|+.|||+++|+.|||.||+++++||+.|..+|.+.|.+ .+...++ ...+.+..+...
T Consensus 238 ~K-~~-------~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (428)
T 3saf_A 238 NK-QY-------QLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFT 309 (428)
T ss_dssp CC-TT-------TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTTCCCCCCCCC
T ss_pred Cc-cc-------cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhhcCCCCC
Confidence 74 22 236999999999999999999999999999999999998872 1122121 112222111112
Q ss_pred CCCCCCCCC-CCccccccccceeeccC--CCcccceecccCCCCC---------------------------cceeeccc
Q 020198 242 YVDWPPLPP-VPGVRFIYVDYLIVEGD--VPEEEILSILDVPPGK---------------------------MGRIIGRR 291 (329)
Q Consensus 242 ~~~w~~~~~-~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~---------------------------~~~~~~~~ 291 (329)
...|..+-. ..+ .++++++++.+. .-|+++|+..|+||+. .+..++++
T Consensus 310 ~~~~~~~~~~~~~--~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~ 387 (428)
T 3saf_A 310 DESYLELYRKQKK--HLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQ 387 (428)
T ss_dssp TTGGGHHHHTTCC--CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHT
T ss_pred cccHHHHHHHhcc--CCChHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHH
Confidence 223432110 111 235678887776 7799999999999955 23345678
Q ss_pred Cceeeeeecccce
Q 020198 292 GSSILAIKESCNA 304 (329)
Q Consensus 292 ~~~~~~~~~~~~~ 304 (329)
|..|+++++.+.+
T Consensus 388 g~~~l~~I~~a~~ 400 (428)
T 3saf_A 388 INEMHLLIQQARE 400 (428)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8888877766543
No 2
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.96 E-value=5e-32 Score=265.37 Aligned_cols=244 Identities=22% Similarity=0.215 Sum_probs=193.6
Q ss_pred cccCCCCCCCCCCCCcccEEEEeCCCCCCccccCCCcccceEEeeecCccccc-cCCceeEEEeecCCeeEEEecccchH
Q 020198 10 HIPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGE 88 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~i~vV~t~~~L~~~~l~~~~~~~~~Ia~D~E~~~~~-~~g~l~llQLa~~~~~~liD~~~l~~ 88 (329)
..|.|+.+..+. ++.+|++.+++.. +++. +.....+|||+|+.+.. +.+++|+|||++++.+|++|+..+..
T Consensus 74 ~~~~~~~~~~~~-----~~~~I~t~~~L~~-~~~~-L~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~ylid~l~l~~ 146 (410)
T 2hbj_A 74 REEIPSKSWDDS-----VPIWVDTSTELES-MLED-LKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRE 146 (410)
T ss_dssp CCCCCCCCGGGC-----CCEEECSHHHHHH-HHHH-HTTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTT
T ss_pred CCCCCCCCcCCC-----CcEEeCCHHHHHH-HHHH-HhhCCceEEEeeecCCcCCCCcEEEEEEEECCcEEEEechhhhh
Confidence 355555555555 6788988777775 6765 34567899999998875 68899999999988899999765532
Q ss_pred HHHHhccccccccceeeeeccccCccchhheecceeecccchhHHHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCcc
Q 020198 89 TVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168 (329)
Q Consensus 89 ~~~~~L~~lLed~~i~KV~hd~k~Dl~~L~~~~Gi~l~~vfDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l 168 (329)
.+..|+++|+|+++.||+||+|+|+.+|++.+|+.+.++||||+|+|+++++ + .||+.|++ +|||..+
T Consensus 147 -~l~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~--~-------~~L~~L~~--~~lg~~l 214 (410)
T 2hbj_A 147 -NLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLP--R-------HSLAYLLE--NFANFKT 214 (410)
T ss_dssp -TGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCS--C-------CSHHHHHH--HHSCCCC
T ss_pred -hHHHHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCC--c-------cCHHHHHH--HHcCCCC
Confidence 2568999999999999999999999999877999999999999999999975 2 57999999 9999888
Q ss_pred chhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHhhhhcchheeeccee--eeeeeee---------
Q 020198 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGAL--YCRCFCI--------- 237 (329)
Q Consensus 169 ~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~~~~~~~~~--~~r~~~~--------- 237 (329)
+| .. ..++|..|||+++|+.|||.||++++.||+.|.++|++.|++.|..+++. ..++|..
T Consensus 215 ~K-~~-------~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 286 (410)
T 2hbj_A 215 SK-KY-------QLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPS 286 (410)
T ss_dssp CC-TT-------TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCEECCGGGCCSSCC
T ss_pred Cc-cc-------cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHhhhccccccccc
Confidence 63 22 13599999999999999999999999999999999999999988776653 2333310
Q ss_pred -----cCCCCCCCCCCCCCCccccccccceeeccC--CCcccceecccCCCCC
Q 020198 238 -----NENDYVDWPPLPPVPGVRFIYVDYLIVEGD--VPEEEILSILDVPPGK 283 (329)
Q Consensus 238 -----~~~~~~~w~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~ 283 (329)
..+....|+++.+..++ +++++++.++ .-|+++|+..|+||+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l---~~~~~~l~~~L~~wR~~~Ar~~d~p~~~ 336 (410)
T 2hbj_A 287 SEVYSPIEKESPWKILMYQYNI---PPEREVLVRELYQWRDLIARRDDESPRF 336 (410)
T ss_dssp SSEECCCCSSSSSSSCSSCSCC---CSTTHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred cccccCCchhHHHHHHhhhcCC---CHHHHHHHHHHHHHHHHHHHHcCCCCcE
Confidence 11123459887665543 4567777776 7899999999999965
No 3
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.94 E-value=3.8e-30 Score=249.39 Aligned_cols=252 Identities=21% Similarity=0.195 Sum_probs=195.5
Q ss_pred cEEEEeCCCCCCccccCCCcccceEEeeecCccccc-cCCceeEEEeecCCeeEEEecccchHHHHHhccccccccceee
Q 020198 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105 (329)
Q Consensus 27 ~i~vV~t~~~L~~~~l~~~~~~~~~Ia~D~E~~~~~-~~g~l~llQLa~~~~~~liD~~~l~~~~~~~L~~lLed~~i~K 105 (329)
++.+|+|.+++.+ +++. +...+.+|||+|+.+.. +.+.+|+|||++++++|++|+..+. .+..|+++|+|+++.|
T Consensus 2 ~~~~I~t~~~l~~-~~~~-l~~~~~va~D~E~~~~~~~~~~l~liqla~~~~~~lid~~~l~--~~~~L~~ll~d~~i~K 77 (375)
T 1yt3_A 2 NYQMITTDDALAS-LCEA-VRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT--DWSPLKAILRDPSITK 77 (375)
T ss_dssp CCEEECSHHHHHH-HHHH-HTTSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCS--CCHHHHHHHHCTTSEE
T ss_pred CeEEeCCHHHHHH-HHHH-HcCCCeEEEEeeecCCCcCCCceEEEEEecCCcEEEEeCCCCC--ChHHHHHHHcCCCceE
Confidence 4677888777775 6664 34568899999998875 5789999999998889999975542 2467899999999999
Q ss_pred eeccccCccchhheecceeecccchhHHHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCccchhHHHHHHHhcCCCCc
Q 020198 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW 185 (329)
Q Consensus 106 V~hd~k~Dl~~L~~~~Gi~l~~vfDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l~~k~~~~~l~~~~~~~W 185 (329)
|+||+|+|+.+|++.+|+.+.++|||++|+|++++.. .+||+.|++ +|||..++| .+ ..++|
T Consensus 78 v~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~~--------~~~L~~L~~--~~l~~~l~K-~~-------~~sdw 139 (375)
T 1yt3_A 78 FLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPM--------SWGFASMVE--EYSGVTLDK-SE-------SRTDW 139 (375)
T ss_dssp EESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCT--------TCCHHHHHH--HHHCCCCCC-TT-------TTSCT
T ss_pred EEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCCC--------ChhHHHHHH--HHcCCCCCC-Cc-------ccCCC
Confidence 9999999999997669999999999999999998731 368999999 999998873 22 13599
Q ss_pred cccchHHHHHHhhcccceehHHHHHHHHHHhhhhcchheeecceee--eeeeeecCCCCCCCCCCCCCCcccccccccee
Q 020198 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALY--CRCFCINENDYVDWPPLPPVPGVRFIYVDYLI 263 (329)
Q Consensus 186 ~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~~~~~~~~~~--~r~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~ 263 (329)
..|||+++|+.|||.||++++.||+.|.++|++.|++++..++... .+... +.+....|+++.+... +++++++
T Consensus 140 ~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g~~~l~~~e~E~pl~~~~~-~~~~~~~~~~~~~~~~---l~~~~~~ 215 (375)
T 1yt3_A 140 LARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQE-VVAPEDAWRDITNAWQ---LRTRQLA 215 (375)
T ss_dssp TSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC-CCCGGGGGGGSTTGGG---SCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhccc-CCCchHHHHhccCccc---CCHHHHH
Confidence 9999999999999999999999999999999999999885444321 11111 1111234888655433 3567888
Q ss_pred eccC--CCcccceecccCCCCC--------------------cc------eeecccCceeeeeecccce
Q 020198 264 VEGD--VPEEEILSILDVPPGK--------------------MG------RIIGRRGSSILAIKESCNA 304 (329)
Q Consensus 264 ~~~~--~~~~~~~~~~~~~~~~--------------------~~------~~~~~~~~~~~~~~~~~~~ 304 (329)
+.++ .-|+++|+..|+||+. +. +.++++|..|+++++.+.+
T Consensus 216 ~~~~L~~wR~~~A~~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~ig~~~~~~~~~g~~~l~~i~~~~~ 284 (375)
T 1yt3_A 216 CLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQT 284 (375)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcceEECHHHHHHHHHHCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 8886 5589999999999977 11 1234678888877776643
No 4
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.92 E-value=4.1e-27 Score=209.83 Aligned_cols=183 Identities=23% Similarity=0.205 Sum_probs=141.8
Q ss_pred ccEEEEeCCCCCC----ccccCCCcccceEEeeecCcccc---ccCCceeEEEeecC-CeeEEEecccchHHHHHhcccc
Q 020198 26 VPIHIVTNASQLP----AEFLEPSSERQLVIGFDCEGVDL---CRHGSLCIMQLAFP-DAIYLVDAIQGGETVVKACKPA 97 (329)
Q Consensus 26 ~~i~vV~t~~~L~----~~~l~~~~~~~~~Ia~D~E~~~~---~~~g~l~llQLa~~-~~~~liD~~~l~~~~~~~L~~l 97 (329)
.++.+|+|++++. + +++. +...+.+|||+||.+. .+.++++++|++++ +.+|+||+..+.. +...|+++
T Consensus 15 g~i~~i~~~~~~~~~~~~-~~~~-l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~~-~~~~L~~l 91 (208)
T 2e6m_A 15 GSIVYSYEASDCSFLSED-ISMR-LSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSV-FPQGLKML 91 (208)
T ss_dssp SEEEEECSHHHHHHHHHH-HHHH-CCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCSS-CCHHHHHH
T ss_pred CcEEEEeCHHHHHHHHHH-HHHH-hccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECccccc-chHHHHHH
Confidence 3688999999887 3 3343 4556789999999886 34789999999984 6899998865432 34678999
Q ss_pred ccccceeeeeccccCccchhheecceeecccch-hHHHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCccch-hHHHH
Q 020198 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVD-TQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE-KEEVR 175 (329)
Q Consensus 98 Led~~i~KV~hd~k~Dl~~L~~~~Gi~l~~vfD-t~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l~~-k~~~~ 175 (329)
|+|+.+.||+||+|.|+..|.+.+|+.+.++|| |++|+|++++. . ..||+.|++ +|||..+.+ |.. .
T Consensus 92 L~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~-~-------~~~L~~L~~--~~l~~~~~K~k~~-~ 160 (208)
T 2e6m_A 92 LENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCA-E-------TWSLNGLVK--HVLGKQLLKDKSI-R 160 (208)
T ss_dssp HTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCC-C-------CCCHHHHHH--HHHSCBCCCCHHH-H
T ss_pred hcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCC-C-------ChhHHHHHH--HHcCCCcCCCCCe-e
Confidence 999999999999999999997669999989999 99999999872 1 368999999 999988753 222 1
Q ss_pred HHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHhhhhcchheeecc
Q 020198 176 VLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRG 228 (329)
Q Consensus 176 ~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~~~~~~~ 228 (329)
.++|..|||+++|+.|||.||+++++||+.|.++|++.|.+.|..+|
T Consensus 161 ------~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~~~~~~~~~ 207 (208)
T 2e6m_A 161 ------CSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAE 207 (208)
T ss_dssp ------TSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC------------
T ss_pred ------eCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhcccc
Confidence 36999999999999999999999999999999999999999888755
No 5
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.91 E-value=7.7e-26 Score=201.95 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=131.4
Q ss_pred EEEeCCCCCCccccCCC-----cccceEEeeecCcccc-------ccC--CceeEEEeecCCeeEEEeccc-chHHHHHh
Q 020198 29 HIVTNASQLPAEFLEPS-----SERQLVIGFDCEGVDL-------CRH--GSLCIMQLAFPDAIYLVDAIQ-GGETVVKA 93 (329)
Q Consensus 29 ~vV~t~~~L~~~~l~~~-----~~~~~~Ia~D~E~~~~-------~~~--g~l~llQLa~~~~~~liD~~~-l~~~~~~~ 93 (329)
..|++.+++.. +++.. ..+..+||||+||... .++ +++|+||||+++++++|++.. +.. .+..
T Consensus 22 ~~v~~~~~l~~-~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~~~~~~-~L~~ 99 (206)
T 1vk0_A 22 IDVGSSTDISP-YLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHD-NLKD 99 (206)
T ss_dssp EECCSSCCCHH-HHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECCSSCCG-GGHH
T ss_pred EEEecHHHHHH-HHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEeccccCCc-cHHH
Confidence 44666777764 55441 1445789999999842 133 489999999998999998821 221 1344
Q ss_pred ccccccccceeeeeccccCccchhheecceeecccchhH-HHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCccch-h
Q 020198 94 CKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQ-IAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE-K 171 (329)
Q Consensus 94 L~~lLed~~i~KV~hd~k~Dl~~L~~~~Gi~l~~vfDt~-lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l~~-k 171 (329)
|+.+|+|++|.||||++++|+..|++.+|+.+.++|||+ +|..+++.... ..+||+.|++ ++||+++ | |
T Consensus 100 L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~------~~~gL~~Lv~--~~lg~~l-K~k 170 (206)
T 1vk0_A 100 LYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVL------EFLGTRELAH--RVLWSDL-GQL 170 (206)
T ss_dssp HHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGG------GGCCHHHHHH--HHHCCCC-HHH
T ss_pred HHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCC------CCccHHHHHH--HHhCCcC-CCC
Confidence 788999999999999999999999988999999999997 77777764211 1478999999 9999999 3 2
Q ss_pred HHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHH
Q 020198 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214 (329)
Q Consensus 172 ~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~ 214 (329)
.... +||.. |||++|+.|||.||++++.||+.|.+
T Consensus 171 ~~~~-------SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 171 DSIE-------AKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHH-------HTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccc-------CCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2233 39999 99999999999999999999999975
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.90 E-value=2.8e-27 Score=233.52 Aligned_cols=229 Identities=17% Similarity=0.224 Sum_probs=176.6
Q ss_pred EEEeCCCCCCccccCCCcccc-eEEeeecCccccc-cCCceeEEEeecC-CeeEEEecccch---HHHHHhccccccccc
Q 020198 29 HIVTNASQLPAEFLEPSSERQ-LVIGFDCEGVDLC-RHGSLCIMQLAFP-DAIYLVDAIQGG---ETVVKACKPALESSY 102 (329)
Q Consensus 29 ~vV~t~~~L~~~~l~~~~~~~-~~Ia~D~E~~~~~-~~g~l~llQLa~~-~~~~liD~~~l~---~~~~~~L~~lLed~~ 102 (329)
.+|+|.+++.+ +++. +... +.|+||+|+.+.. +.+.+|+|||++. +.+|+||+.... .. +..|+++|+|+
T Consensus 19 ~~I~t~e~L~~-~~~~-L~~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~-l~~L~~lL~d~- 94 (440)
T 3cym_A 19 NVIDTLPAFRD-YCSE-LASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGAD-WNDFNRAVGDA- 94 (440)
T ss_dssp CEECSHHHHHH-HHHH-HHSCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCC-HHHHHHHHTTC-
T ss_pred EeeCCHHHHHH-HHHH-HHhcCCeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccC-HHHHHHHHCCC-
Confidence 46777777775 6765 3444 7899999998764 5889999999984 568999885421 11 46789999997
Q ss_pred eeeeeccccCccchhheecceeecccchhHHHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCccchhHHHHHHHhcCC
Q 020198 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDP 182 (329)
Q Consensus 103 i~KV~hd~k~Dl~~L~~~~Gi~l~~vfDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l~~k~~~~~l~~~~~ 182 (329)
.||+|++++|+.+|. .+|+.+.++|||++|+|++++. + +||+.|++ +|+|..+.| .. ..
T Consensus 95 -~KV~h~~k~Dl~~L~-~~gi~~~~~fDt~lAa~lL~~~--~-------~gL~~L~~--~~lg~~~~K-~~-------~~ 153 (440)
T 3cym_A 95 -VWILHDSLQDLPGFD-ELGMEPQRLFDTEIAARLLGLK--R-------FGLAAVTE--HFLGLTLAK-EH-------SA 153 (440)
T ss_dssp -EEEESSHHHHHHHHH-HHTCCCCEEEEHHHHHHHTTCS--S-------CSHHHHHH--HHHCEECCC-CC-------TT
T ss_pred -CEEEEcCHHHHHHHH-HcCCcCCceehHHHHHHHhCCC--C-------CCHHHHHH--HHhCCCccc-cc-------cc
Confidence 699999999999996 8999999999999999999972 2 57999999 999988763 21 13
Q ss_pred CCccccchHHHHHHhhcccceehHHHHHHHHHHhhhhcchheeecceeeeeee--eecCCCCCCCCCCCCCCcccccccc
Q 020198 183 QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCF--CINENDYVDWPPLPPVPGVRFIYVD 260 (329)
Q Consensus 183 ~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~~~~~~~~~~~r~~--~~~~~~~~~w~~~~~~~~~~~~~~~ 260 (329)
++|..|||+++|+.|||.||++++.||+.|..+|.+.|++.+..+++...... ..+.+....|+++.+...+. .+++
T Consensus 154 sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g~~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 232 (440)
T 3cym_A 154 ADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGPRKEHLIPWMHVSHITEVM-RDRQ 232 (440)
T ss_dssp CCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSSCCCCSSGGGCCTTGGGGT-TCHH
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhccccccCCCchHHHHHhccccccC-CCHH
Confidence 59999999999999999999999999999999999999999987766421111 11122334577654433220 1456
Q ss_pred ceeeccC--CCcccceecccCCCCC
Q 020198 261 YLIVEGD--VPEEEILSILDVPPGK 283 (329)
Q Consensus 261 ~l~~~~~--~~~~~~~~~~~~~~~~ 283 (329)
++++.++ .-|+++|+..|+||+.
T Consensus 233 ~l~~~~~L~~wR~~~Ar~~d~p~~~ 257 (440)
T 3cym_A 233 ALAIVRALWTRRDELAREYDIAPTL 257 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccE
Confidence 7888876 6699999999999966
No 7
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.70 E-value=6e-18 Score=172.18 Aligned_cols=157 Identities=14% Similarity=0.044 Sum_probs=129.1
Q ss_pred eEEeeecCccccc-cCCceeEEEeecCCeeEEEecccchHHHHHhccccccccceeeeeccccCccchhheecceeecc-
Q 020198 50 LVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHN- 127 (329)
Q Consensus 50 ~~Ia~D~E~~~~~-~~g~l~llQLa~~~~~~liD~~~l~~~~~~~L~~lLed~~i~KV~hd~k~Dl~~L~~~~Gi~l~~- 127 (329)
...++|+|+.+.. +.++++++|++.++++|+|++.. ......|+++|+|+++.||+||+|+|+..|. .+|+.+.+
T Consensus 30 ~~~aldtE~~~~~~~~a~Lvgisla~~~~a~yIp~~~--~~~l~~Lk~lLed~~i~KV~hn~K~Dl~vL~-~~Gi~l~g~ 106 (592)
T 3pv8_A 30 DKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPET--ALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGV 106 (592)
T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHH--HTTCHHHHHHHTCTTSEEEESSHHHHHHHHH-HTTCCCCCE
T ss_pred cCcEEEEEEcCCccCcccEEEEEEEcCCceEEEccch--hhHHHHHHHHHhCCCCeEEEechHHHHHHHH-HcCCCCCCc
Confidence 3458999988776 67899999999987788886532 1134678999999999999999999999996 58999864
Q ss_pred cchhHHHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCccchhHHHHHHHhcCCCCcc---ccchHHHHHHhhccccee
Q 020198 128 VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT---YRPLTELMVRAAADDVRF 204 (329)
Q Consensus 128 vfDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l~~k~~~~~l~~~~~~~W~---~RPLs~~ql~YAA~Da~~ 204 (329)
+||||+|+||+++..++ ++|++|++ +|||..+.+.+++. +|. .+|.++.+..|||.||.+
T Consensus 107 ~fDTmLAAYLL~p~~~~-------~~L~~La~--~yLg~~l~~~ee~~--------gkg~~~~~~~~e~~~~YAa~DA~~ 169 (592)
T 3pv8_A 107 SFDLLLAAYLLDPAQGV-------DDVAAAAK--MKQYEAVRPDEAVY--------GKGAKRAVPDEPVLAEHLVRKAAA 169 (592)
T ss_dssp EEEHHHHHHHHCGGGCC-------CSHHHHHG--GGTCCSSCCHHHHH--------CSGGGCCCCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHcCCCCCC-------CCHHHHHH--HHcCCCCchHHHhc--------CccccccCccHHHHHHHHHHHHHH
Confidence 89999999999997544 46999999 99999887544432 332 345668899999999999
Q ss_pred hHHHHHHHHHHhhhhcchheee
Q 020198 205 LPYIYHNMMKKLNQQSLWYLAV 226 (329)
Q Consensus 205 Ll~L~~~L~~~L~~~g~~~~~~ 226 (329)
+++|++.|.++|++.+++.++.
T Consensus 170 l~~L~~~L~~~L~e~~l~~l~~ 191 (592)
T 3pv8_A 170 IWELERPFLDELRRNEQDRLLV 191 (592)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHH
Confidence 9999999999999999888754
No 8
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.67 E-value=7.8e-18 Score=172.28 Aligned_cols=183 Identities=22% Similarity=0.242 Sum_probs=142.1
Q ss_pred cEEEEeCCCCCCccccCCCcccceEEeeecCccccc-cCCceeEEEeec-CCeeEEEeccc--------c-hHHHHHhcc
Q 020198 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAF-PDAIYLVDAIQ--------G-GETVVKACK 95 (329)
Q Consensus 27 ~i~vV~t~~~L~~~~l~~~~~~~~~Ia~D~E~~~~~-~~g~l~llQLa~-~~~~~liD~~~--------l-~~~~~~~L~ 95 (329)
+|.+|++.+++.+ +++. +.....++||+|+.+.+ +.++++++|++. .+..+++.+.. + .++++..|+
T Consensus 6 ~y~~I~~~~~l~~-~~~~-l~~~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L~ 83 (605)
T 2kfn_A 6 NYVTILDEETLKA-WIAK-LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLK 83 (605)
T ss_dssp SSEECCSHHHHHH-HHHH-HHTSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHH
T ss_pred heEEecCHHHHHH-HHHh-cccCCeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHHH
Confidence 4667777666665 6654 33457799999999886 578999999997 56566662221 1 134567899
Q ss_pred ccccccceeeeeccccCccchhheecceeecc-cchhHHHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCccchhHHH
Q 020198 96 PALESSYITKVIHDCKRDSEALYFQFGIKLHN-VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEV 174 (329)
Q Consensus 96 ~lLed~~i~KV~hd~k~Dl~~L~~~~Gi~l~~-vfDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l~~k~~~ 174 (329)
++|+++.+.||+||+|+|+.+|. .+|+.+.+ +|||++++|++++...+ .+|+.|++ +|||....+.++
T Consensus 84 ~~L~d~~i~kV~hnak~D~~~L~-~~Gi~l~~~~~DT~laayLL~p~~~~-------~~L~~La~--~~Lg~~~i~~~~- 152 (605)
T 2kfn_A 84 PLLEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDTMLESYILNSVAGR-------HDMDSLAE--RWLKHKTITFEE- 152 (605)
T ss_dssp HHHTCTTSCEEESSHHHHHHHHH-TTTCCCCCEEEEHHHHHHHHCTTSSC-------CSHHHHHH--HHSCCCCCCHHH-
T ss_pred HHHcCCCCeEEEECcHHHHHHHH-HCCCCCCCccccHHHHHHHhCCCCCC-------CCHHHHHH--HhcCCCcccHHH-
Confidence 99999999999999999999996 48999876 89999999999986433 57999999 998876542222
Q ss_pred HHHHhc--CCCCccccchHHHHHHhhcccceehHHHHHHHHHHhhh-hcchhee
Q 020198 175 RVLLRQ--DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ-QSLWYLA 225 (329)
Q Consensus 175 ~~l~~~--~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~-~g~~~~~ 225 (329)
++++ ...+|..+|+ +.+..||+.||.++++||..|.++|++ .|++.++
T Consensus 153 --~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~l~~L~ 203 (605)
T 2kfn_A 153 --IAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVF 203 (605)
T ss_dssp --HHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred --HhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 2222 2248999998 568999999999999999999999999 8887765
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.51 E-value=1e-14 Score=151.52 Aligned_cols=158 Identities=16% Similarity=0.041 Sum_probs=121.9
Q ss_pred EeeecCccccc-cCCceeEEEeec--CCeeEEEecccchHHHHHhccccccccceeeeeccc-cCccchhheec------
Q 020198 52 IGFDCEGVDLC-RHGSLCIMQLAF--PDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC-KRDSEALYFQF------ 121 (329)
Q Consensus 52 Ia~D~E~~~~~-~~g~l~llQLa~--~~~~~liD~~~l~~~~~~~L~~lLed~~i~KV~hd~-k~Dl~~L~~~~------ 121 (329)
++||+|++++. ..++++++|+.. .+.++++|+..+. ..+..|+++|+ +.+.||+||+ ++|+.+|.+.+
T Consensus 2 vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~-~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~ 79 (698)
T 1x9m_A 2 IVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFG-AYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLNR 79 (698)
T ss_dssp EEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHH-HHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCCcCCCCCEEEEEEEEecCCCcEEEEChHHHH-HHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcccC
Confidence 78999999987 567999999997 4578999887553 24788999999 8899999999 99999997543
Q ss_pred ceeec--ccchhHHHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCccchhH--------HHHHHHh-----cCC----
Q 020198 122 GIKLH--NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKE--------EVRVLLR-----QDP---- 182 (329)
Q Consensus 122 Gi~l~--~vfDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l~~k~--------~~~~l~~-----~~~---- 182 (329)
|+.+. .+||||+|+|++++...+ ++|+.|++ +||+.+|..-. ....+++ +..
T Consensus 80 Gi~l~~~~~~DTmlaayLL~p~~~~-------~~L~~La~--~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~ 150 (698)
T 1x9m_A 80 EFHLPRENCIDTLVLSRLIHSNLKD-------TDMGLLRS--GKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVD 150 (698)
T ss_dssp CCCCCGGGEEEHHHHHHHHTTTSCC-------CTTTTSCG--GGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCT
T ss_pred CccCCCCcchhHHHHHHHhCCCCCC-------CCHHHHHH--HHcccchhhhcccccccccCHHHHhCcccccccccccc
Confidence 88776 489999999999986433 56899999 89833332100 0011122 111
Q ss_pred -CCccccchHHHHHHhhcccceehHHHHHHHHHHhhhhcch
Q 020198 183 -QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222 (329)
Q Consensus 183 -~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~ 222 (329)
.+|.. +++.+..||+.||.++++||+.|.++|++.+++
T Consensus 151 ~~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~~ 189 (698)
T 1x9m_A 151 GMEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPPE 189 (698)
T ss_dssp TGGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCTT
T ss_pred cCCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 17875 448899999999999999999999999988775
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=99.19 E-value=2e-12 Score=130.24 Aligned_cols=127 Identities=15% Similarity=0.089 Sum_probs=104.6
Q ss_pred eEEeeecCccccc-cCCceeEEEeecCCeeEEEecccchHHHHHhccccccccceeeeeccccCccchhheecceeeccc
Q 020198 50 LVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNV 128 (329)
Q Consensus 50 ~~Ia~D~E~~~~~-~~g~l~llQLa~~~~~~liD~~~l~~~~~~~L~~lLed~~i~KV~hd~k~Dl~~L~~~~Gi~l~~v 128 (329)
+.+++|+|+.+.. +..+++++|++.++++|+++ ..+..|+++|+| +.||+||+|+|+. .+|+.+..+
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~~~~a~~i~------~~l~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~~~ 78 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAARGGRVHRAP------EPYKALRDLKEA--RGLLAKDLSVLAL----REGLGLPPG 78 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEETTEEEECS------SHHHHHTTCSSB--CSTTHHHHHHHHH----HTTCCCCBC
T ss_pred CceEEEEEecCCccCcccEEEEEEEcCCEEEEeh------hhHHHHHHHHcC--CCEEEeccHHHHH----HcCCCCCcc
Confidence 4589999998876 67899999999888888875 246789999998 8899999999998 478887778
Q ss_pred chhHHHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCccchhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHH
Q 020198 129 VDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYI 208 (329)
Q Consensus 129 fDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L 208 (329)
|||++|+||+++. + ++|++|++ +|++. +. + +|+.||.++++|
T Consensus 79 fDT~laAyLL~p~--~-------~~L~~La~--~yl~~-~g-k-------------------------~a~~DA~~t~~L 120 (540)
T 4dfk_A 79 DDPMLLAYLLDPS--N-------TTPEGVAR--RYGGE-WT-E-------------------------EAGERAALSERL 120 (540)
T ss_dssp CCHHHHHHHHCTT--C-------CCHHHHHH--HHTSC-CC-S-------------------------CHHHHHHHHHHH
T ss_pred eeHHHHHHHhCCC--C-------CCHHHHHH--HHhhh-hc-c-------------------------chHHHHHHHHHH
Confidence 9999999999986 3 46899998 88874 21 1 245789999999
Q ss_pred HHHHHHHh-hhhcchheee
Q 020198 209 YHNMMKKL-NQQSLWYLAV 226 (329)
Q Consensus 209 ~~~L~~~L-~~~g~~~~~~ 226 (329)
|+.|.++| ++.+++.++.
T Consensus 121 ~~~L~~~L~~~~~~~~~~~ 139 (540)
T 4dfk_A 121 FANLWGRLEGEERLLWLYR 139 (540)
T ss_dssp HHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHH
Confidence 99999999 7778777654
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.24 E-value=1.4e-07 Score=84.77 Aligned_cols=160 Identities=12% Similarity=0.136 Sum_probs=97.1
Q ss_pred EeCCCCCCccccCCCcccceEEeeecCccccc-cCCceeEEEeec-----CCe-------eEEEeccc---c--------
Q 020198 31 VTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAF-----PDA-------IYLVDAIQ---G-------- 86 (329)
Q Consensus 31 V~t~~~L~~~~l~~~~~~~~~Ia~D~E~~~~~-~~g~l~llQLa~-----~~~-------~~liD~~~---l-------- 86 (329)
+++.+++.. +... +.....++||+|++++. ...+++-|.+.. .+. ..++.+.. +
T Consensus 21 ~~~~~~~~~-l~~~-l~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~ 98 (235)
T 3v9w_A 21 MSDNAQLTG-LCDR-FRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFN 98 (235)
T ss_dssp --------C-HHHH-TTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHH
T ss_pred ccccccccC-chhc-ccCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHh
Confidence 345555554 5544 46678999999999875 344443333221 111 12244410 0
Q ss_pred --h-----------HHHHHhccccccc-------cceeeeeccccCccchhhee---cceee-----cccchhHHHHHHH
Q 020198 87 --G-----------ETVVKACKPALES-------SYITKVIHDCKRDSEALYFQ---FGIKL-----HNVVDTQIAYSLI 138 (329)
Q Consensus 87 --~-----------~~~~~~L~~lLed-------~~i~KV~hd~k~Dl~~L~~~---~Gi~l-----~~vfDt~lA~~LL 138 (329)
. .+++..+.+++++ .....|+||+++|+..|.+. +|+.. ...+||+.+++.+
T Consensus 99 GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~ 178 (235)
T 3v9w_A 99 GIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLA 178 (235)
T ss_dssp CCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHH
T ss_pred CCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHH
Confidence 0 1234555555542 45677999999999998532 47742 2488999999988
Q ss_pred HhHhcCCCCCCCeeeeeecccCCcccCCccchhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHhhh
Q 020198 139 EEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218 (329)
Q Consensus 139 ~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~ 218 (329)
.+. .+|..|++ .+|+.+... ...+|..||.++.+|+..|.+++.+
T Consensus 179 ~p~----------~~L~~l~~---~~gi~~~~~----------------------~~H~Al~DA~~ta~l~~~l~~~l~~ 223 (235)
T 3v9w_A 179 LGQ----------TVLSKACQ---TAGMDFDST----------------------QAHSALYDTERTAVLFCEIVNRWKR 223 (235)
T ss_dssp HSC----------CSHHHHHH---HHTCCCCTT----------------------TTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCC----------CCHHHHHH---HcCCCCCCC----------------------CCcChHHHHHHHHHHHHHHHHHHHh
Confidence 642 35788876 446554310 1245788999999999999999999
Q ss_pred hcchheeec
Q 020198 219 QSLWYLAVR 227 (329)
Q Consensus 219 ~g~~~~~~~ 227 (329)
.|.|++...
T Consensus 224 ~~~~~l~~~ 232 (235)
T 3v9w_A 224 LGGWPLSAA 232 (235)
T ss_dssp TTCSSCC--
T ss_pred cCCcccccc
Confidence 999988653
No 12
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.22 E-value=2.2e-07 Score=97.99 Aligned_cols=125 Identities=19% Similarity=0.199 Sum_probs=93.4
Q ss_pred eEEeeecCccccccCCceeEEEeec-CCeeEEEecccchHHHHHhccccccccceeeeeccccCccchhheecceeeccc
Q 020198 50 LVIGFDCEGVDLCRHGSLCIMQLAF-PDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNV 128 (329)
Q Consensus 50 ~~Ia~D~E~~~~~~~g~l~llQLa~-~~~~~liD~~~l~~~~~~~L~~lLed~~i~KV~hd~k~Dl~~L~~~~Gi~l~~v 128 (329)
..+++|+|+.+ ...+.+| ++++. ++.+++++. . + ..|+++|+|+.+ |+|+|+..|. .+||.+..+
T Consensus 305 ~~va~d~et~~-~~~~~l~-vg~a~~~g~a~yvp~-~---~--~~Lk~lLed~~i-----n~K~d~~~L~-~~Gi~~~~~ 370 (832)
T 1bgx_T 305 AFVGFVLSRKE-PMWADLL-ALAAARGGRVHRAPE-P---Y--KALRDLKEARGL-----LAKDLSVLAL-REGLGLPPG 370 (832)
T ss_dssp CCBEEECSSSC-TTTCCCC-EEECBSSSEEECCSC-H---H--HHHHHCSSBCBT-----THHHHHHHHH-HHTCCCCBC
T ss_pred ceEEEEEecCC-cccCcee-EEEEEcCCCEEEEEC-C---H--HHHHHHHhCCCC-----ChHHHHHHHH-HcCCccCcc
Confidence 45899999877 4346664 44776 456677633 1 1 568999999886 9999999996 599998877
Q ss_pred chhHHHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCccchhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHH
Q 020198 129 VDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYI 208 (329)
Q Consensus 129 fDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L 208 (329)
||||+|+||+++. + ++|++|++ +| | + +|. + + || .||.++++|
T Consensus 371 ~Dt~laayLl~p~--~-------~~l~~l~~--~~-g--------------k---~~~--~----~--ya-~da~~~~~l 412 (832)
T 1bgx_T 371 DDPMLLAYLLDPS--N-------TTPEGVAR--RY-G--------------G---EWT--E----E--AG-ERAALSERL 412 (832)
T ss_dssp CCHHHHHHHHCTT--C-------CSTTHHHH--HH-S--------------C---CCC--S----S--HH-HHHHHHHHH
T ss_pred cCHHHHHHHcCCC--C-------CCHHHHHH--Hh-C--------------C---Cch--H----H--HH-HHHHHHHHH
Confidence 9999999999985 3 35777777 55 2 1 231 1 1 77 699999999
Q ss_pred HHHHHHHhh-hhcchheee
Q 020198 209 YHNMMKKLN-QQSLWYLAV 226 (329)
Q Consensus 209 ~~~L~~~L~-~~g~~~~~~ 226 (329)
+..|.++|. +.+++.++.
T Consensus 413 ~~~l~~~L~~~~~~~~l~~ 431 (832)
T 1bgx_T 413 FANLWGRLEGEERLLWLYR 431 (832)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHH
Confidence 999999999 777777653
No 13
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=96.14 E-value=0.0019 Score=55.67 Aligned_cols=148 Identities=22% Similarity=0.161 Sum_probs=84.0
Q ss_pred ceEEeeecCccccccCCceeEEEeec---CCeeE---EEeccc-c----------h----------HHHHHhcccccccc
Q 020198 49 QLVIGFDCEGVDLCRHGSLCIMQLAF---PDAIY---LVDAIQ-G----------G----------ETVVKACKPALESS 101 (329)
Q Consensus 49 ~~~Ia~D~E~~~~~~~g~l~llQLa~---~~~~~---liD~~~-l----------~----------~~~~~~L~~lLed~ 101 (329)
...++||+|++++.....-.+++|+. .+... +|.|.. + . .++...|..++.+.
T Consensus 5 ~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~~~ 84 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKGK 84 (189)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHTTS
T ss_pred CeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHCCC
Confidence 46789999998875332222334432 22221 343321 0 0 12445666677643
Q ss_pred ceeeeeccccCccchhheecceeecccchhHHHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCccchhHHHHHHHhcC
Q 020198 102 YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQD 181 (329)
Q Consensus 102 ~i~KV~hd~k~Dl~~L~~~~Gi~l~~vfDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l~~k~~~~~l~~~~ 181 (329)
..|+||+.+|+..|...+. ...++||+....+.... .... ....+|..|++ +++|+++....
T Consensus 85 --~lV~hn~~fD~~~L~~~~~--~~~~idt~~~~~~~~~~-~~p~--~~~~~L~~l~~--~~lgi~~~~~~--------- 146 (189)
T 1wlj_A 85 --LVVGHDLKHDFQALKEDMS--GYTIYDTSTDRLLWREA-KLDH--CRRVSLRVLSE--RLLHKSIQNSL--------- 146 (189)
T ss_dssp --EEEESSHHHHHHHTTCCCT--TCEEEEGGGCHHHHHHH-TC-------CCHHHHHH--HHTCCCCSCCT---------
T ss_pred --EEEECCcHHHHHHHHHhCC--CCceechHhhhhhhhcc-cCCC--CCCccHHHHHH--HHcCCCCCCCC---------
Confidence 4599999999999965331 12478998653322210 0000 01367899997 66887664200
Q ss_pred CCCccccchHHHHHHhhcccceehHHHHHHHHHHhhhhcchheee
Q 020198 182 PQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226 (329)
Q Consensus 182 ~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~~~~~ 226 (329)
-. .-|..||.++..|+..+.+++++.+...+..
T Consensus 147 ---~~---------H~Al~Da~ata~l~~~l~~~~~~~~~~~~~~ 179 (189)
T 1wlj_A 147 ---LG---------HSSVEDARATMELYQISQRIRARRGLPRLAV 179 (189)
T ss_dssp ---TC---------CCHHHHHHHHHHHHHHHHHHHHHTTCCCCC-
T ss_pred ---CC---------cCcHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 00 1266789999999999998888765555443
No 14
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=95.85 E-value=0.0029 Score=54.27 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=78.5
Q ss_pred ccceEEeeecCccccc-cCCceeEEEeec----CCe-----eEEEeccc-ch--------------------HHHHHhcc
Q 020198 47 ERQLVIGFDCEGVDLC-RHGSLCIMQLAF----PDA-----IYLVDAIQ-GG--------------------ETVVKACK 95 (329)
Q Consensus 47 ~~~~~Ia~D~E~~~~~-~~g~l~llQLa~----~~~-----~~liD~~~-l~--------------------~~~~~~L~ 95 (329)
.....++||+|++++. ..+++ ++|+. .+. ..+|.|.. +. .+++..+.
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~I--ieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~ 87 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEI--IEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFL 87 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCE--EEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCCCeE--EEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHH
Confidence 3457899999998875 34443 34432 222 12443321 10 12345566
Q ss_pred ccccccceeeeeccccCccchhhe---ecceee--cccchhHHHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCccch
Q 020198 96 PALESSYITKVIHDCKRDSEALYF---QFGIKL--HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170 (329)
Q Consensus 96 ~lLed~~i~KV~hd~k~Dl~~L~~---~~Gi~l--~~vfDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l~~ 170 (329)
.++.+. ..|+||+.+|+..|.+ .+|+.+ ..++||+..++.+. .. ...+|..+++ ++|++...
T Consensus 88 ~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~-------~~~~L~~l~~---~~gi~~~~ 154 (186)
T 2p1j_A 88 GFLEDS--IIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KL-------RSYSLDSVVE---KLGLGPFR 154 (186)
T ss_dssp HHSSSC--EEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CC-------SCCSHHHHHH---HTTCCSTT
T ss_pred HHHCCC--EEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hc-------CCCCHHHHHH---HcCCCCCC
Confidence 667653 4599999999998853 256654 34789987665543 11 1356888886 45765421
Q ss_pred hHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHhhhhc
Q 020198 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220 (329)
Q Consensus 171 k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g 220 (329)
...|..||..+..|+..+.++.+++|
T Consensus 155 ------------------------~H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 155 ------------------------HHRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHTTCC----
T ss_pred ------------------------CcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12366789999999998877766554
No 15
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=95.59 E-value=0.0028 Score=55.98 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=59.3
Q ss_pred ceeeeeccccCccchhhe---eccee-----ecccchhHHHHHHHHhHhcCCCCCCCeeeeeecccCCcccCCccchhHH
Q 020198 102 YITKVIHDCKRDSEALYF---QFGIK-----LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEE 173 (329)
Q Consensus 102 ~i~KV~hd~k~Dl~~L~~---~~Gi~-----l~~vfDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~Lg~~l~~k~~ 173 (329)
....|+||+.+|+..|.+ .+|+. ....+||+..++.+-+ + .+|..+++ ++|+++....
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~---~-------~~L~~l~~---~~gi~~~~~~- 191 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG---Q-------TVLAKACQ---AAGMEFDNRE- 191 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS---C-------CSHHHHHH---HTTCCCCTTS-
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC---C-------CCHHHHHH---HcCCCcCCCC-
Confidence 345699999999998853 24654 1357899877665532 1 35788875 4576643100
Q ss_pred HHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHhhhhcchh
Q 020198 174 VRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWY 223 (329)
Q Consensus 174 ~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~~ 223 (329)
...|..||.++.+|+..+.+++.+.|.|.
T Consensus 192 ---------------------~H~Al~Da~~ta~l~~~l~~~~~~~~~~~ 220 (224)
T 2f96_A 192 ---------------------AHSARYDTEKTAELFCGIVNRWKEMGGWM 220 (224)
T ss_dssp ---------------------CCCHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ---------------------CCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 01266799999999999999998877664
No 16
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=94.63 E-value=0.0096 Score=53.43 Aligned_cols=102 Identities=16% Similarity=0.076 Sum_probs=60.9
Q ss_pred HHHhccccccc--cceeeeeccc-cCccchhhe---ecceee--c--ccchhHHHHHHHHhHhc-CCCCCCCeeeeeecc
Q 020198 90 VVKACKPALES--SYITKVIHDC-KRDSEALYF---QFGIKL--H--NVVDTQIAYSLIEEQEG-RKRSPDDYISFVGLL 158 (329)
Q Consensus 90 ~~~~L~~lLed--~~i~KV~hd~-k~Dl~~L~~---~~Gi~l--~--~vfDt~lA~~LL~~~~~-~~~l~~~~~sL~~L~ 158 (329)
++..|..++.+ +....|+||+ .+|...|.+ .+|+.. . ..+||+..++.+..... ...-....++|++|+
T Consensus 104 v~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~ 183 (242)
T 3mxm_B 104 LAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIY 183 (242)
T ss_dssp HHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHH
Confidence 34444555655 1134599996 999988853 357663 2 36899987775442100 000000236799999
Q ss_pred cCCcccCCccchhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHhh
Q 020198 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (329)
Q Consensus 159 ~~~~~Lg~~l~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~ 217 (329)
+ +++|++... .+ -|..||.++.+|+..+.+++.
T Consensus 184 ~--~~~gi~~~~-~H-----------------------~Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 184 T--RLYWQAPTD-SH-----------------------TAEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp H--HHHSSCCSS-TT-----------------------SHHHHHHHHHHHHTSSHHHHH
T ss_pred H--HHhCCCCCC-Cc-----------------------ChHHHHHHHHHHHHHHHHHHH
Confidence 8 778876531 11 156788888888777766554
No 17
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=94.40 E-value=0.0036 Score=45.84 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=33.1
Q ss_pred cccCCCCCcceeecccCceeeeeecccceeEEeccC
Q 020198 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA 311 (329)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (329)
...||+.++|.+||++|++|..|.+..+|.|-|-..
T Consensus 6 ~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~ 41 (76)
T 1dtj_A 6 EMAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 41 (76)
T ss_dssp EEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCT
T ss_pred EEEEChHHcceEECCCchHHHHHHHHhCCEEEECcC
Confidence 467899999999999999999999999999999864
No 18
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.23 E-value=0.0092 Score=45.91 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=37.0
Q ss_pred cccceecccCCCCCcceeecccCceeeeeecccceeEEecc
Q 020198 270 EEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGG 310 (329)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (329)
+..+-....||+.+.+++||++|++|..|.+..++.|-|-.
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~ 54 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQ 54 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCC
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecC
Confidence 44567788999999999999999999999999999999964
No 19
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=94.00 E-value=0.0073 Score=45.32 Aligned_cols=36 Identities=25% Similarity=0.553 Sum_probs=33.4
Q ss_pred ecccCCCCCcceeecccCceeeeeecccceeEEecc
Q 020198 275 SILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGG 310 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (329)
....||+.++|++||+.|++|..|.+..+|.|-|..
T Consensus 16 ~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~ 51 (85)
T 2opv_A 16 QEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ 51 (85)
T ss_dssp EEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECS
T ss_pred EEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcC
Confidence 456799999999999999999999999999999976
No 20
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=93.94 E-value=0.0047 Score=44.82 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=33.5
Q ss_pred ecccCCCCCcceeecccCceeeeeecccceeEEeccC
Q 020198 275 SILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA 311 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (329)
....|||.+.|.+||++|++|..|.+..++.|-|--.
T Consensus 7 ~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~ 43 (71)
T 1vig_A 7 VEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD 43 (71)
T ss_dssp EEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC
T ss_pred EEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC
Confidence 4568999999999999999999999999999999653
No 21
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=93.93 E-value=0.0048 Score=48.20 Aligned_cols=49 Identities=29% Similarity=0.431 Sum_probs=39.9
Q ss_pred ceecccCCCCCcceeecccCceeeeeecccceeEEeccCCCC---CCcccee
Q 020198 273 ILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGP---PDKDESL 321 (329)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 321 (329)
+.....||+.++|++||++|.+|..|.+..+|.|-|.....+ +|+.+.|
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I 66 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKI 66 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEE
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEE
Confidence 345678999999999999999999999999999999864433 3665544
No 22
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=93.89 E-value=0.008 Score=44.78 Aligned_cols=37 Identities=30% Similarity=0.488 Sum_probs=33.5
Q ss_pred eecccCCCCCcceeecccCceeeeeecccceeEEecc
Q 020198 274 LSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGG 310 (329)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (329)
-....||+.++|.+||+.|++|..|.+..+|.|-|-.
T Consensus 8 ~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~ 44 (82)
T 1zzk_A 8 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE 44 (82)
T ss_dssp EEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECC
T ss_pred EEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcC
Confidence 4457899999999999999999999999999999964
No 23
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=93.71 E-value=0.0028 Score=46.31 Aligned_cols=48 Identities=27% Similarity=0.397 Sum_probs=39.6
Q ss_pred eecccCCCCCcceeecccCceeeeeecccceeEEeccCCCCCCccceeE
Q 020198 274 LSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKDESLH 322 (329)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (329)
.-..-||+.+.|.+||+.|++|..|.+..+|.|-|-.. +.|+|++.|.
T Consensus 6 ~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-~~~er~v~I~ 53 (73)
T 2axy_A 6 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-NCPERIITLA 53 (73)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-CCSEEEEEEE
T ss_pred EEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-CCCcEEEEEE
Confidence 34567888899999999999999999999999999764 6677765543
No 24
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.41 E-value=0.013 Score=45.11 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=34.8
Q ss_pred ceecccCCCCCcceeecccCceeeeeecccceeEEecc
Q 020198 273 ILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGG 310 (329)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (329)
.-....|||.+.+++||++|++|..|.+..++.|.|.-
T Consensus 17 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~ 54 (97)
T 2ctl_A 17 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPD 54 (97)
T ss_dssp CEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCC
T ss_pred eeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecC
Confidence 45677999999999999999999999999999999965
No 25
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=93.40 E-value=0.0074 Score=46.23 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=39.8
Q ss_pred cceecccCCCCCcceeecccCceeeeeecccceeEEeccCCCC---CCcccee
Q 020198 272 EILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGP---PDKDESL 321 (329)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 321 (329)
+.-....||+.++|++||+.|.+|..|.+..+|.|-|-....+ ++|.+.|
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I 66 (94)
T 1x4m_A 14 NAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRI 66 (94)
T ss_dssp CEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEE
T ss_pred cEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEE
Confidence 3456788999999999999999999999999999999753221 4555544
No 26
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=93.31 E-value=0.0061 Score=45.39 Aligned_cols=48 Identities=29% Similarity=0.547 Sum_probs=37.9
Q ss_pred eecccCCCCCcceeecccCceeeeeecccceeEEeccC-CCCCCcccee
Q 020198 274 LSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA-KGPPDKDESL 321 (329)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 321 (329)
....-||+.++|.+||++|++|..|.+..+|.|-|-.. .+..++.+.|
T Consensus 7 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I 55 (82)
T 1wvn_A 7 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTI 55 (82)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEE
T ss_pred EEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEE
Confidence 44567889999999999999999999999999999753 2233555444
No 27
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=92.91 E-value=0.004 Score=45.67 Aligned_cols=48 Identities=31% Similarity=0.543 Sum_probs=37.3
Q ss_pred eecccCCCCCcceeecccCceeeeeecccceeEEeccCC-CCCCcccee
Q 020198 274 LSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK-GPPDKDESL 321 (329)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 321 (329)
-...-||+.++|.+||++|++|..|.+..+|.|-|-.+. +.+|+.+.|
T Consensus 6 ~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I 54 (76)
T 2p2r_A 6 SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 54 (76)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEE
T ss_pred EEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEE
Confidence 345678888999999999999999999999999997631 223554444
No 28
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=92.76 E-value=0.0071 Score=47.35 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=38.8
Q ss_pred ceecccCCCCCcceeecccCceeeeeecccceeEEeccCCCCCCccce
Q 020198 273 ILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKDES 320 (329)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (329)
.-....||+.+.+.+||++|++|..|.+..++.|-|.-....++.+.+
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I 64 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAI 64 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEE
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEE
Confidence 445779999999999999999999999999999999654333444443
No 29
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=92.61 E-value=0.029 Score=52.40 Aligned_cols=101 Identities=16% Similarity=0.062 Sum_probs=59.9
Q ss_pred HHhccccccc--cceeeeecc-ccCccchhhe---ecceeec----ccchhHHHHHHHHhH-hcCCCCCCCeeeeeeccc
Q 020198 91 VKACKPALES--SYITKVIHD-CKRDSEALYF---QFGIKLH----NVVDTQIAYSLIEEQ-EGRKRSPDDYISFVGLLA 159 (329)
Q Consensus 91 ~~~L~~lLed--~~i~KV~hd-~k~Dl~~L~~---~~Gi~l~----~vfDt~lA~~LL~~~-~~~~~l~~~~~sL~~L~~ 159 (329)
+..|..++.+ +....|+|| +.+|...|.+ .+|+... ..+||+...+.+... ..........++|+++++
T Consensus 105 ~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~ 184 (314)
T 3u3y_B 105 AILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYT 184 (314)
T ss_dssp HHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHH
Confidence 3444555655 124569999 8999998853 3566642 267998866533211 000000012467889988
Q ss_pred CCcccCCccchhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHhh
Q 020198 160 DPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (329)
Q Consensus 160 ~~~~Lg~~l~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~ 217 (329)
+|+|+.... .+ -|..||.++.+|+..+.+++.
T Consensus 185 --~l~gi~~~~-aH-----------------------rAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 185 --RLYWQAPTD-SH-----------------------TAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp --HHHSSCCSC-SS-----------------------SHHHHHHHHHHHHHSSHHHHH
T ss_pred --HhcCCCCCC-CC-----------------------CHHHHHHHHHHHHHHHHHHHH
Confidence 768876531 11 156788888888887776664
No 30
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=92.56 E-value=0.005 Score=46.43 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=32.5
Q ss_pred cccCCCCCcceeecccCceeeeeecccceeEEeccC
Q 020198 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA 311 (329)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (329)
...||+.++|.+||++|.+|..|.+..+|.|-|-..
T Consensus 6 ~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~ 41 (87)
T 1ec6_A 6 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 41 (87)
T ss_dssp EEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCT
T ss_pred EEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccC
Confidence 456888899999999999999999999999999863
No 31
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=92.32 E-value=0.016 Score=45.45 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=33.2
Q ss_pred ecccCCCCCcceeecccCceeeeeecccceeEEeccC
Q 020198 275 SILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA 311 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (329)
....||+.++|.+||+.|++|..|.+..+|.|-|-..
T Consensus 9 ~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~ 45 (107)
T 2hh2_A 9 MTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQ 45 (107)
T ss_dssp EEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCC
T ss_pred EEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCc
Confidence 3567888999999999999999999999999999764
No 32
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=91.71 E-value=0.0099 Score=45.33 Aligned_cols=51 Identities=31% Similarity=0.502 Sum_probs=40.2
Q ss_pred ccceecccCCCCCcceeecccCceeeeeecccceeEEeccCC-CCCCcccee
Q 020198 271 EEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK-GPPDKDESL 321 (329)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 321 (329)
..+-..+.||+.++|.+||+.|.+|..|.+..+|.|-|-... +.+++.+.|
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I 64 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCML 64 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEE
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEE
Confidence 345566789999999999999999999999999999997642 334455444
No 33
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=91.58 E-value=0.029 Score=48.07 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=55.9
Q ss_pred HHHhccccccccceeeeeccccCccchhhe---eccee---e---cccchhHHHHHHHHhHhcCCCCCCCeeeeeecccC
Q 020198 90 VVKACKPALESSYITKVIHDCKRDSEALYF---QFGIK---L---HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD 160 (329)
Q Consensus 90 ~~~~L~~lLed~~i~KV~hd~k~Dl~~L~~---~~Gi~---l---~~vfDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~ 160 (329)
++..+..++.+. ..|+||+.+|+..|.+ .+|+. + ...+||+..++.+.+.. ..+|.++++
T Consensus 85 v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~--------~~~L~~l~~- 153 (194)
T 2gui_A 85 VADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK--------RNSLDALCA- 153 (194)
T ss_dssp HHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS--------CCSHHHHHH-
T ss_pred HHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCC--------CCCHHHHHH-
Confidence 345566667654 3489999999998853 24665 2 25789976655444321 246888886
Q ss_pred CcccCCccchhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHh
Q 020198 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216 (329)
Q Consensus 161 ~~~Lg~~l~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L 216 (329)
++|++..... ..-|..||.++.+|+..|..+.
T Consensus 154 --~~gi~~~~~~----------------------~H~Al~Da~~ta~l~~~l~~~~ 185 (194)
T 2gui_A 154 --RYEIDNSKRT----------------------LHGALLDAQILAEVYLAMTGGQ 185 (194)
T ss_dssp --HTTCCCTTCS----------------------SCCHHHHHHHHHHHHHHHTC--
T ss_pred --HcCcCCCCCC----------------------CCChHHHHHHHHHHHHHHHhcc
Confidence 4576543100 0115678888888887775443
No 34
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.15 E-value=0.026 Score=43.12 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=35.1
Q ss_pred cceecccCCCCCcceeecccCceeeeeecccceeEEecc
Q 020198 272 EILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGG 310 (329)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (329)
++-....||+.+.|.+||++|.+|..|.+..++.|-|-.
T Consensus 16 ~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~ 54 (94)
T 2cte_A 16 QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPR 54 (94)
T ss_dssp CEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCC
T ss_pred ceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCC
Confidence 456678999999999999999999999999999999853
No 35
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=91.08 E-value=0.033 Score=46.38 Aligned_cols=46 Identities=24% Similarity=0.459 Sum_probs=36.5
Q ss_pred cccCCCCCcceeecccCceeeeeecccceeEEeccC---CCCCCcccee
Q 020198 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA---KGPPDKDESL 321 (329)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 321 (329)
..-||+.++|.+||++|++|..|.+.++|.|-|--. .+.+|+...|
T Consensus 5 ~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I 53 (164)
T 2jvz_A 5 EIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRI 53 (164)
T ss_dssp EEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEE
T ss_pred EEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEE
Confidence 467899999999999999999999999999988432 2345665443
No 36
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=90.99 E-value=0.011 Score=44.67 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=33.9
Q ss_pred ceecccCCCCCcceeecccCceeeeeecccceeEEecc
Q 020198 273 ILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGG 310 (329)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (329)
+.....||+.+.|.+||+.|++|..|.+..+|.|-|-.
T Consensus 14 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~ 51 (89)
T 1j5k_A 14 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE 51 (89)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECS
T ss_pred EEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecC
Confidence 45567899999999999999999999999999999964
No 37
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.84 E-value=0.024 Score=42.43 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=37.0
Q ss_pred ceecccCCCCCcceeecccCceeeeeecccceeEEeccCCCCCCcccee
Q 020198 273 ILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKDESL 321 (329)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (329)
......||..+.|.+||++|++|..|.+..+|.|-|-. ...++++.|
T Consensus 10 ~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~--~~~~~~v~I 56 (83)
T 2dgr_A 10 TTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPG--RDKEPVFAV 56 (83)
T ss_dssp EEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCC--SSSCCEEEE
T ss_pred eEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecC--CCCCCeEEE
Confidence 45567899989999999999999999999999999842 223455444
No 38
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=90.01 E-value=0.028 Score=44.05 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=37.0
Q ss_pred ecccCCCCCcceeecccCceeeeeecccceeEEeccCC-CCCCcccee
Q 020198 275 SILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK-GPPDKDESL 321 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 321 (329)
....||+.+++++||+.|++|..|.+..+|.|-|-... .-|+|.+.|
T Consensus 13 ~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I 60 (106)
T 2hh3_A 13 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHI 60 (106)
T ss_dssp EEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEE
T ss_pred EEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEE
Confidence 45678999999999999999999999999999996422 224454443
No 39
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=88.66 E-value=0.037 Score=42.50 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=39.5
Q ss_pred cccceecccCCCCCcceeecccCceeeeeeccc-ceeEEeccCCCCCCccce
Q 020198 270 EEEILSILDVPPGKMGRIIGRRGSSILAIKESC-NAEILIGGAKGPPDKDES 320 (329)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 320 (329)
.+.+-....|||.+.+.+||++|.+|..|.+.+ ++.|-|--...+.|++.+
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I 65 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVI 65 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEE
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEE
Confidence 344566788999999999999999999999999 999998543223344443
No 40
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=88.08 E-value=0.035 Score=46.35 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=37.3
Q ss_pred cccCCCCCcceeecccCceeeeeecccceeEEeccC--CCCCCcccee
Q 020198 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA--KGPPDKDESL 321 (329)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 321 (329)
.+-||+.++|.+||++|++|..|.+.++|.|-|--. .+.+++++.|
T Consensus 6 ~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I 53 (163)
T 3krm_A 6 QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVII 53 (163)
T ss_dssp EEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEE
T ss_pred EEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEE
Confidence 456888999999999999999999999999999542 3456665544
No 41
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=87.02 E-value=0.027 Score=46.91 Aligned_cols=47 Identities=28% Similarity=0.411 Sum_probs=38.5
Q ss_pred eecccCCCCCcceeecccCceeeeeecccceeEEeccCCCCCCcccee
Q 020198 274 LSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKDESL 321 (329)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (329)
.-.+.||+.++|.+||++|++|..|.+.++|.|-|-.. +.|++...|
T Consensus 6 ~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-~~~~r~v~I 52 (160)
T 2jzx_A 6 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-NCPERIITL 52 (160)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-TTTEEEEEE
T ss_pred EEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-CCCceEEEE
Confidence 44677888999999999999999999999999999764 445665443
No 42
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=86.92 E-value=0.035 Score=42.37 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=33.5
Q ss_pred ceecccCCCCCcceeecccCceeeeeeccccee-EEec
Q 020198 273 ILSILDVPPGKMGRIIGRRGSSILAIKESCNAE-ILIG 309 (329)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 309 (329)
......|+|.+++.+||.+|++|..|.+..+|. |-|-
T Consensus 15 ~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ 52 (91)
T 2cpq_A 15 FHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD 52 (91)
T ss_dssp EEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE
T ss_pred eEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE
Confidence 455678999999999999999999999999997 9885
No 43
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=86.55 E-value=0.17 Score=44.53 Aligned_cols=102 Identities=23% Similarity=0.236 Sum_probs=61.1
Q ss_pred HHhcccccccc--ceeeeeccc-cCccchhhe---ecceeec---ccchhHHHHHHHHhHhc-CCCCCC-Ceeeeeeccc
Q 020198 91 VKACKPALESS--YITKVIHDC-KRDSEALYF---QFGIKLH---NVVDTQIAYSLIEEQEG-RKRSPD-DYISFVGLLA 159 (329)
Q Consensus 91 ~~~L~~lLed~--~i~KV~hd~-k~Dl~~L~~---~~Gi~l~---~vfDt~lA~~LL~~~~~-~~~l~~-~~~sL~~L~~ 159 (329)
...|..+|+.- ....|+||+ .+|...|.+ .+|+... ..+||+..++.+....- ....++ ...+|..+++
T Consensus 100 ~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~ 179 (238)
T 1y97_A 100 VRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFH 179 (238)
T ss_dssp HHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHH
Confidence 44556666652 144599999 999998853 3566542 37899877666542100 000000 1356888886
Q ss_pred CCcccCCccchhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHhhh
Q 020198 160 DPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218 (329)
Q Consensus 160 ~~~~Lg~~l~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~ 218 (329)
+++|+... . ...|..||..+..++..+.+++.+
T Consensus 180 --~~~gi~~~-~-----------------------~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 180 --RYFRAEPS-A-----------------------AHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp --HHHSSCCC---------------------------CHHHHHHHHHHHHHHTHHHHHH
T ss_pred --HHhCCCCc-c-----------------------CccHHHHHHHHHHHHHHHHHHHHH
Confidence 67776543 1 122667899999999888776653
No 44
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=86.14 E-value=0.039 Score=46.79 Aligned_cols=50 Identities=22% Similarity=0.417 Sum_probs=39.1
Q ss_pred cceecccCCCCCcceeecccCceeeeeecccceeEEeccCC----CCCCcccee
Q 020198 272 EILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK----GPPDKDESL 321 (329)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 321 (329)
++--..-||+.++|.+||++|++|..|.+..+|.|-|-... +.++|+..|
T Consensus 5 ~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I 58 (178)
T 2anr_A 5 QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI 58 (178)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEE
T ss_pred CEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEE
Confidence 34556778888999999999999999999999999995432 345555443
No 45
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=85.61 E-value=0.094 Score=43.55 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=33.1
Q ss_pred ecccCCCCCcceeecccCceeeeeecccceeEEeccC
Q 020198 275 SILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA 311 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (329)
-...||+.+.|++||++|++|..|.+..+|.|.|...
T Consensus 93 ~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~ 129 (164)
T 2jvz_A 93 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD 129 (164)
T ss_dssp BCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCC
T ss_pred EEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCC
Confidence 3456889999999999999999999999999999754
No 46
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=84.24 E-value=0.047 Score=46.11 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=36.6
Q ss_pred cccCCCCCcceeecccCceeeeeecccceeEEeccC-CCCCCcccee
Q 020198 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA-KGPPDKDESL 321 (329)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 321 (329)
.+-||+.++|.+||++|++|..|.+.++|.|-|-.. .+.+|++..|
T Consensus 6 ~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I 52 (174)
T 1j4w_A 6 DVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQI 52 (174)
T ss_dssp EEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEE
T ss_pred EEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEE
Confidence 456788889999999999999999999999999642 2455565443
No 47
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=84.21 E-value=0.14 Score=42.66 Aligned_cols=35 Identities=26% Similarity=0.568 Sum_probs=32.7
Q ss_pred cccCCCCCcceeecccCceeeeeecccceeEEecc
Q 020198 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGG 310 (329)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (329)
...||+...|++||++|++|..|.+..+|.|.|-.
T Consensus 88 ~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~ 122 (163)
T 3krm_A 88 HIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 122 (163)
T ss_dssp EEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT
T ss_pred EEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC
Confidence 67889999999999999999999999999999965
No 48
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=82.88 E-value=1.3 Score=43.74 Aligned_cols=98 Identities=10% Similarity=-0.092 Sum_probs=53.5
Q ss_pred HHhccccccccceeeeecc-ccCccchhhee---cceee--------cccchhHHHHHHHHhHhcC-CCCC-----CCee
Q 020198 91 VKACKPALESSYITKVIHD-CKRDSEALYFQ---FGIKL--------HNVVDTQIAYSLIEEQEGR-KRSP-----DDYI 152 (329)
Q Consensus 91 ~~~L~~lLed~~i~KV~hd-~k~Dl~~L~~~---~Gi~l--------~~vfDt~lA~~LL~~~~~~-~~l~-----~~~~ 152 (329)
...+..++..+....|+|| +.+|...|.+. +|+.+ ...+||.-.++.+...... ...+ ....
T Consensus 85 l~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~ 164 (482)
T 2qxf_A 85 AARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSF 164 (482)
T ss_dssp HHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCC
T ss_pred HHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCC
Confidence 3445556663344569999 89999887532 34432 2367887766665431100 0000 0135
Q ss_pred eeeecccCCcccCCccchhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHH
Q 020198 153 SFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215 (329)
Q Consensus 153 sL~~L~~~~~~Lg~~l~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~ 215 (329)
+|..+++ ++|++.. .. .-|..||.++..|+..+.++
T Consensus 165 kL~~L~~---~~Gi~~~-~a-----------------------HrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 165 RLEHLTK---ANGIEHS-NA-----------------------HDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp CHHHHHH---HTTCCCC---------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHH---HcCCCCC-CC-----------------------CCHHHHHHHHHHHHHHHHHh
Confidence 6777764 5566542 11 11556777777777776543
No 49
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=82.67 E-value=0.14 Score=43.16 Aligned_cols=38 Identities=34% Similarity=0.467 Sum_probs=34.0
Q ss_pred eecccCCCCCcceeecccCceeeeeecccceeEEeccC
Q 020198 274 LSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA 311 (329)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (329)
.....||+.+.|++||+.|.+|..|.+..+|.|-|-..
T Consensus 105 ~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~ 142 (174)
T 1j4w_A 105 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRN 142 (174)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECC
T ss_pred EEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCC
Confidence 44568899999999999999999999999999999763
No 50
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=78.92 E-value=0.16 Score=42.98 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=34.3
Q ss_pred ceecccCCCCCcceeecccCceeeeeecccceeEEecc
Q 020198 273 ILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGG 310 (329)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (329)
......||+.+.|.+||++|.+|..|.+..+|.|-|-.
T Consensus 104 ~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~ 141 (178)
T 2anr_A 104 NQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQ 141 (178)
T ss_dssp GEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECC
T ss_pred eEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeC
Confidence 45577899999999999999999999999999999965
No 51
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=75.42 E-value=0.16 Score=41.99 Aligned_cols=37 Identities=35% Similarity=0.595 Sum_probs=32.9
Q ss_pred eecccCCCCCcceeecccCceeeeeecccceeEEecc
Q 020198 274 LSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGG 310 (329)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (329)
.-...||+...|.+||++|++|..|.+.++|.|-|-.
T Consensus 90 ~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~ 126 (160)
T 2jzx_A 90 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 126 (160)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC
T ss_pred EEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC
Confidence 4456788888999999999999999999999999965
No 52
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=74.43 E-value=0.64 Score=37.66 Aligned_cols=37 Identities=35% Similarity=0.693 Sum_probs=31.4
Q ss_pred eecccCCCC------CcceeecccCceeeeeecccceeEEecc
Q 020198 274 LSILDVPPG------KMGRIIGRRGSSILAIKESCNAEILIGG 310 (329)
Q Consensus 274 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (329)
-....||+. .+|++||-+|.+|..|.+..+|.|.|=|
T Consensus 8 ~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~Irg 50 (131)
T 1k1g_A 8 SDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRG 50 (131)
T ss_dssp EEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEE
T ss_pred EEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecC
Confidence 344566665 5789999999999999999999999976
No 53
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=68.25 E-value=0.89 Score=38.71 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=56.7
Q ss_pred HHhccccccccc-----eeeeeccccCccc-hhhe---ecceeec----ccchhHHHHHHHHhHhcCCCCCCCeeeeeec
Q 020198 91 VKACKPALESSY-----ITKVIHDCKRDSE-ALYF---QFGIKLH----NVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157 (329)
Q Consensus 91 ~~~L~~lLed~~-----i~KV~hd~k~Dl~-~L~~---~~Gi~l~----~vfDt~lA~~LL~~~~~~~~l~~~~~sL~~L 157 (329)
+..+..++.+.. ...|+||+.+|+. .|.+ .+|+... ..+||+-.+..+-+. .. ...+|.++
T Consensus 89 ~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~-~~-----~~~~L~~l 162 (204)
T 1w0h_A 89 LKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKV-PR-----SQTKLTIM 162 (204)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTC-CG-----GGCSHHHH
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCC-CC-----ccchHHHH
Confidence 344555665432 2359999999996 7753 2455532 478997655433221 00 12468888
Q ss_pred ccCCcccCCccchhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHhh
Q 020198 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (329)
Q Consensus 158 ~~~~~~Lg~~l~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~ 217 (329)
++ ++|++..... .-|..||..+..|+..|.++..
T Consensus 163 ~~---~~gi~~~~~~-----------------------H~Al~Da~~ta~l~~~l~~~~~ 196 (204)
T 1w0h_A 163 LE---KLGMDYDGRP-----------------------HCGLDDSKNIARIAVRMLQDGC 196 (204)
T ss_dssp HH---HTTCCCCSCT-----------------------TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HH---HcCCCCCCCc-----------------------cCcHHHHHHHHHHHHHHHHCCC
Confidence 86 4676543101 1156788899899888876653
No 54
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=67.67 E-value=0.47 Score=38.90 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=28.1
Q ss_pred ecccCCCCCcceeecccCceeeeeecccceeE
Q 020198 275 SILDVPPGKMGRIIGRRGSSILAIKESCNAEI 306 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (329)
..+.||.+.+|.+||++|++|.+|.+.++.+|
T Consensus 6 ~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~i 37 (144)
T 2qnd_A 6 EQFIVREDLMGLAIGTHGANIQQARKVPGVTA 37 (144)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHTSTTEEE
T ss_pred EEEEECCcceeeEECCChhHHHHHHHHHCCeE
Confidence 35688999999999999999999999999554
No 55
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=66.47 E-value=1.8 Score=46.38 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=65.2
Q ss_pred eeeeeccccCccchhheecceeecc--cchhHHHHHHHH----hH--------hcC------------------------
Q 020198 103 ITKVIHDCKRDSEALYFQFGIKLHN--VVDTQIAYSLIE----EQ--------EGR------------------------ 144 (329)
Q Consensus 103 i~KV~hd~k~Dl~~L~~~~Gi~l~~--vfDt~lA~~LL~----~~--------~~~------------------------ 144 (329)
-+.||||+.+|-..+..+|.+.-.+ ++|||-++-.+. .+ .++
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~ 274 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAIS 274 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcccc
Confidence 3459999999998887888887753 789998754321 11 001
Q ss_pred --CCCC-CCee--eeeecccCCcccCC-ccchhHHHHHHHhcCCCCccccch---HHHHHHhhcccceehHHHHHHHHHH
Q 020198 145 --KRSP-DDYI--SFVGLLADPRYCGI-SYQEKEEVRVLLRQDPQFWTYRPL---TELMVRAAADDVRFLPYIYHNMMKK 215 (329)
Q Consensus 145 --~~l~-~~~~--sL~~L~~~~~~Lg~-~l~~k~~~~~l~~~~~~~W~~RPL---s~~ql~YAA~Da~~Ll~L~~~L~~~ 215 (329)
..+. ...- ||.++.+ -|+|. .++ |+. +..|.+. +...+ =.+.+.|+|.||.++.++|..+...
T Consensus 275 ~~~W~~~sS~N~~SL~dV~~--lhcg~~~ld-K~~-Rd~Fv~~----~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~ 346 (1172)
T 3ikm_A 275 SWDWLDISSVNSNSLAEVHR--LYVGGPPLE-KEP-RELFVKG----TMKDIRENFQDLMQYCAQDVWATHEVFQQQLPL 346 (1172)
T ss_dssp -CCCCCCCCTTSHHHHHHHT--CSSCSCS---SCS-SSSTTTT----CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCcCCHHHHHH--HhCCCcccC-hhh-HhhhhcC----CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 0000 0113 6777777 88886 665 321 2222111 11111 1556899999999999999998877
Q ss_pred hhh
Q 020198 216 LNQ 218 (329)
Q Consensus 216 L~~ 218 (329)
..+
T Consensus 347 F~e 349 (1172)
T 3ikm_A 347 FLE 349 (1172)
T ss_dssp HHT
T ss_pred HHH
Confidence 544
No 56
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=63.75 E-value=3.1 Score=36.13 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=48.9
Q ss_pred HHHhccccccccceeeeeccc--------cCccch-hhe---ecceeec----ccchhHHHHHHHHhHhcCCCCCCCeee
Q 020198 90 VVKACKPALESSYITKVIHDC--------KRDSEA-LYF---QFGIKLH----NVVDTQIAYSLIEEQEGRKRSPDDYIS 153 (329)
Q Consensus 90 ~~~~L~~lLed~~i~KV~hd~--------k~Dl~~-L~~---~~Gi~l~----~vfDt~lA~~LL~~~~~~~~l~~~~~s 153 (329)
++..+..++.+.. .|+||+ .+|+.. |.+ .+|+... ..+|++-...+... .. + ..+
T Consensus 107 v~~~f~~~l~~~~--lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~---~~--p--~~~ 177 (224)
T 2xri_A 107 VLERVDEWMAKEG--LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMG---CW--P--KNG 177 (224)
T ss_dssp HHHHHHHHHHHTT--TTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHT---SC--C--TTT
T ss_pred HHHHHHHHHhhcc--cccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhc---cC--C--CCC
Confidence 3445555666543 389999 888885 522 3455542 35675433222211 10 1 135
Q ss_pred eeecccCCcccCCccchhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHH
Q 020198 154 FVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214 (329)
Q Consensus 154 L~~L~~~~~~Lg~~l~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~ 214 (329)
|.+|++ ++|++..... .-|..||..+..|+..|..
T Consensus 178 L~~l~~---~~gi~~~~~~-----------------------H~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 178 LLDMNK---GLSLQHIGRP-----------------------HSGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp HHHHHH---HTTCCCCSCT-----------------------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HcCCCCCCCC-----------------------cChHHHHHHHHHHHHHHHH
Confidence 777774 5565432100 1256788888888887764
No 57
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=59.27 E-value=4.3 Score=37.00 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=60.9
Q ss_pred HHHhcccccccc-----ceeeeeccccCccc-hhhee---cceeec----ccchhHHHHHHH-HhHhcCCCCCCCeeeee
Q 020198 90 VVKACKPALESS-----YITKVIHDCKRDSE-ALYFQ---FGIKLH----NVVDTQIAYSLI-EEQEGRKRSPDDYISFV 155 (329)
Q Consensus 90 ~~~~L~~lLed~-----~i~KV~hd~k~Dl~-~L~~~---~Gi~l~----~vfDt~lA~~LL-~~~~~~~~l~~~~~sL~ 155 (329)
++..|..++.+. ....|+||+.+|+. .|... +|+... .++||+....-+ +... ...+|.
T Consensus 156 vl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~-------~~~~L~ 228 (299)
T 1zbh_A 156 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR-------SQTKLT 228 (299)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG-------GGCSHH
T ss_pred HHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCC-------CCccHH
Confidence 344555666653 13459999999998 77532 466542 477886543222 1111 125688
Q ss_pred ecccCCcccCCccchhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHhhhhcchhee
Q 020198 156 GLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225 (329)
Q Consensus 156 ~L~~~~~~Lg~~l~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~~~~ 225 (329)
+|++ ++|++..... .-|..||.++..|+..+.++.......++.
T Consensus 229 ~l~~---~~gi~~~g~~-----------------------H~Al~DA~ata~l~~~l~~~~~~~~~~~l~ 272 (299)
T 1zbh_A 229 IMLE---KLGMDYDGRP-----------------------NCGLDDSKNIARIAVRMLQDGCELRINEKM 272 (299)
T ss_dssp HHHH---HTTCCCCSCT-----------------------TCHHHHHHHHHHHHHHHHHTTCCCCCCEEE
T ss_pred HHHH---HcCCCCCCCC-----------------------CChHHHHHHHHHHHHHHHHhCCcCChhhhh
Confidence 8886 5676543101 115678999999999888776543333333
No 58
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=58.77 E-value=0.56 Score=38.45 Aligned_cols=37 Identities=24% Similarity=0.550 Sum_probs=31.7
Q ss_pred ecccCCCCCcceeecccCceeeeeecccce-eEEeccC
Q 020198 275 SILDVPPGKMGRIIGRRGSSILAIKESCNA-EILIGGA 311 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 311 (329)
...-||+...|++||+.|.+|..+.+.+++ .|-|-..
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~ 106 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAE 106 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEE
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCC
Confidence 445688888999999999999999999997 7887653
No 59
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=57.52 E-value=4.6 Score=37.90 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=60.2
Q ss_pred HHHhccccccccc-----eeeeeccccCccc-hhhee---cceeec----ccchhHHHHHHH-HhHhcCCCCCCCeeeee
Q 020198 90 VVKACKPALESSY-----ITKVIHDCKRDSE-ALYFQ---FGIKLH----NVVDTQIAYSLI-EEQEGRKRSPDDYISFV 155 (329)
Q Consensus 90 ~~~~L~~lLed~~-----i~KV~hd~k~Dl~-~L~~~---~Gi~l~----~vfDt~lA~~LL-~~~~~~~~l~~~~~sL~ 155 (329)
++..|..++.+.. ...|+||+.+|+. .|... +|+... .++||+....-+ +... ...+|.
T Consensus 206 Vl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~-------~~~~L~ 278 (349)
T 1zbu_A 206 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR-------SQTKLT 278 (349)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG-------GGGSHH
T ss_pred HHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCC-------CCCCHH
Confidence 3445555666531 3459999999998 77532 466532 467886543322 1111 125688
Q ss_pred ecccCCcccCCccchhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHhhhhcchhe
Q 020198 156 GLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYL 224 (329)
Q Consensus 156 ~L~~~~~~Lg~~l~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L~~~g~~~~ 224 (329)
.|++ ++|+...... .-|..||.++..|+..|..+.......++
T Consensus 279 ~l~~---~~gi~~~g~~-----------------------HrAl~DA~ata~ll~~ll~~~~~~~i~el 321 (349)
T 1zbu_A 279 IMLE---KLGMDYDGRP-----------------------HCGLDDSKNIARIAVRMLQDGCELRINEK 321 (349)
T ss_dssp HHHH---HTTCCCCSCT-----------------------TCHHHHHHHHHHHHHHHHHTTCCCCCCEE
T ss_pred HHHH---HcCCCCCCCC-----------------------CCHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 8885 5676543111 11667899999999988877654333333
No 60
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=52.58 E-value=18 Score=37.45 Aligned_cols=149 Identities=12% Similarity=0.121 Sum_probs=79.9
Q ss_pred cceEEeeecCccccc----cCCceeEEEeecCCeeEEEe--cc--------cchHHHHHhcccccc--ccceeeeeccc-
Q 020198 48 RQLVIGFDCEGVDLC----RHGSLCIMQLAFPDAIYLVD--AI--------QGGETVVKACKPALE--SSYITKVIHDC- 110 (329)
Q Consensus 48 ~~~~Ia~D~E~~~~~----~~g~l~llQLa~~~~~~liD--~~--------~l~~~~~~~L~~lLe--d~~i~KV~hd~- 110 (329)
.-..++||+|+.+.. ....+..|.+...++..++- .. .-..+++..+..++. ||.+. |+||.
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPDii-vGyN~~ 212 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDVL-ITYNGD 212 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCSEE-EESSTT
T ss_pred CcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCCEE-EEeCCC
Confidence 346899999987632 12334333333332222221 10 111234555555554 46553 89997
Q ss_pred cCccchhhee---cceee----------------------c--ccchhHHHHHHHHhHhcCCCCCCCeeeeeecccCCcc
Q 020198 111 KRDSEALYFQ---FGIKL----------------------H--NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163 (329)
Q Consensus 111 k~Dl~~L~~~---~Gi~l----------------------~--~vfDt~lA~~LL~~~~~~~~l~~~~~sL~~L~~~~~~ 163 (329)
.+|+..|... +|+.+ . ..+|++.... ... + + ...+|.++++ .+
T Consensus 213 ~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k---~~~-~--l--~sysL~~Va~--~~ 282 (775)
T 1qht_A 213 NFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIR---RTI-N--L--PTYTLEAVYE--AV 282 (775)
T ss_dssp TTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHH---HHS-C--C--SCCCHHHHHH--HH
T ss_pred CccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHH---Hhc-C--c--CcCCHHHHHH--HH
Confidence 5788776532 33331 1 2567765432 111 1 1 1367899988 88
Q ss_pred cCCccch--hHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHH
Q 020198 164 CGISYQE--KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214 (329)
Q Consensus 164 Lg~~l~~--k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~ 214 (329)
||..-.+ -+++.. -|...+--...+.|+..||..++.|+..+..
T Consensus 283 Lg~~K~dv~~~~i~~-------~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 283 FGKPKEKVYAEEIAQ-------AWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp HCCCCCCCCHHHHHH-------HHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCccCHHHHHH-------HHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 8864322 122222 3443331256789999999999999876643
No 61
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=47.83 E-value=1.2 Score=45.34 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=32.3
Q ss_pred ecccCCCCCcceeecccCceeeeeecccceeEEec
Q 020198 275 SILDVPPGKMGRIIGRRGSSILAIKESCNAEILIG 309 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (329)
....|||.|++.+||.+|.+|..|.+..++.|-|.
T Consensus 569 ~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~ 603 (630)
T 3u1k_A 569 ETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV 603 (630)
T ss_dssp EEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC
T ss_pred EEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc
Confidence 34589999999999999999999999999999997
No 62
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=47.73 E-value=2.5 Score=32.50 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=28.9
Q ss_pred ceecccCCCCCcceeecccCceeeeeeccc-ceeEEe
Q 020198 273 ILSILDVPPGKMGRIIGRRGSSILAIKESC-NAEILI 308 (329)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 308 (329)
.-...+||+.--+.+||++|++|..|.+.+ ++.|.|
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~f 63 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEF 63 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEE
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEe
Confidence 446678887777899999999999999976 666544
No 63
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=46.88 E-value=2.4 Score=34.69 Aligned_cols=30 Identities=33% Similarity=0.676 Sum_probs=27.7
Q ss_pred CcceeecccCceeeeeecccceeEEeccCCC
Q 020198 283 KMGRIIGRRGSSILAIKESCNAEILIGGAKG 313 (329)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (329)
.+|++||-+|.++..|.+.++|.|.|=| +|
T Consensus 18 fiG~IiGPrG~t~K~ie~eTg~kI~IrG-kG 47 (140)
T 2bl5_A 18 FVGRILGPRGLTAKQLEAETGCKIMVRG-KG 47 (140)
T ss_dssp HHHHHTTTTHHHHHHHHHHHSEEEEEES-TT
T ss_pred eeeEEECCCcchHHHHHHHHCCeEEEec-CC
Confidence 3899999999999999999999999998 55
No 64
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=46.34 E-value=1.2 Score=39.32 Aligned_cols=35 Identities=20% Similarity=0.512 Sum_probs=31.8
Q ss_pred ecccCCCCCcceeecccCceeeeeecccceeEEec
Q 020198 275 SILDVPPGKMGRIIGRRGSSILAIKESCNAEILIG 309 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (329)
....|||.|+|.+||+.|..|..|.+.+++.|-|-
T Consensus 36 ~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~ 70 (219)
T 2e3u_A 36 EYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITID 70 (219)
T ss_dssp EEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEEC
T ss_pred EEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEE
Confidence 36789999999999999999999999999888874
No 65
>2gzo_A UPF0301 protein SO3346; GFT-protein structure, nesgc, alpha-beta, structural genomics, PSI, protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.310.1.1
Probab=46.04 E-value=6.1 Score=33.98 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=18.0
Q ss_pred cceeEEeccCCCCCCccceeEee
Q 020198 302 CNAEILIGGAKGPPDKDESLHVH 324 (329)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~ 324 (329)
.+.-+++|||-.+ |+.|+||..
T Consensus 68 ~~~~v~~GGPV~~-~rgfvLH~~ 89 (195)
T 2gzo_A 68 MGSQVLMGGPVSQ-DRGFVLHTS 89 (195)
T ss_dssp CCSCBEESCSBTT-TSCCEEEEC
T ss_pred CCCeEEECCCcCC-CcEEEEEeC
Confidence 4557899998765 799999985
No 66
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=41.87 E-value=2.5 Score=36.44 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=26.1
Q ss_pred CcceeecccCceeeeeecccceeEEecc
Q 020198 283 KMGRIIGRRGSSILAIKESCNAEILIGG 310 (329)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (329)
..||+||+.|.+|.+|....++.|.|-|
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~ 135 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGE 135 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECS
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcC
Confidence 4699999999999999999999999976
No 67
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=41.05 E-value=2.6 Score=37.05 Aligned_cols=27 Identities=41% Similarity=0.641 Sum_probs=25.3
Q ss_pred cceeecccCceeeeeecccceeEEecc
Q 020198 284 MGRIIGRRGSSILAIKESCNAEILIGG 310 (329)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (329)
.|++||+.|.+|.+|.+..++.|.|-+
T Consensus 140 ~GriIGk~G~tik~ie~~Tg~~I~v~~ 166 (219)
T 2e3u_A 140 RGRIIGRKGRTRQIIEEMSGASVSVYG 166 (219)
T ss_dssp HHHHHCGGGHHHHHHHHHHCCEEEEET
T ss_pred hheeECCCchHHHHHHHHhCceEEECC
Confidence 699999999999999999999999965
No 68
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.97 E-value=2.9 Score=33.21 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=26.8
Q ss_pred CCcceeecccCceeeeeecccceeEEecc
Q 020198 282 GKMGRIIGRRGSSILAIKESCNAEILIGG 310 (329)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (329)
.++|++||-+|.+|..|.+..+|.|.|=|
T Consensus 28 n~ig~IIGpgG~tiK~I~~eTG~kI~I~G 56 (119)
T 2yqr_A 28 NVKEKVEGPGCSYLQHIQIETGAKVFLRG 56 (119)
T ss_dssp CHHHHHSCGGGHHHHHHHHHHCCEEEEES
T ss_pred CeeeeEECCCChHHHHHHHHHCCEEEEec
Confidence 36899999999999999999999999975
No 69
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=36.44 E-value=7.4 Score=40.17 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=0.0
Q ss_pred cccCCCCCcceeecccCceeeeeecccceeEEec
Q 020198 276 ILDVPPGKMGRIIGRRGSSILAIKESCNAEILIG 309 (329)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (329)
...|+|.|++.+||-+|.+|.+|.+..++.|-|.
T Consensus 573 ~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~ 606 (726)
T 4aid_A 573 TINIPTDKIREVIGSGGKVIREIVATTGAKVDIN 606 (726)
T ss_dssp ----------------------------------
T ss_pred EEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE
Confidence 4578999999999999999999999999999875
No 70
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=35.57 E-value=6.1 Score=37.52 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=37.8
Q ss_pred CCCcccceecccCCCCCcceeecccC--ceeeeeecccceeEEec
Q 020198 267 DVPEEEILSILDVPPGKMGRIIGRRG--SSILAIKESCNAEILIG 309 (329)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 309 (329)
+..++.+--..+||+.--..+||++| ++|..|.+..+..|.+=
T Consensus 24 e~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fP 68 (376)
T 3n89_A 24 EINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLP 68 (376)
T ss_dssp CCCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECC
T ss_pred EecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECC
Confidence 34566788889998887899999999 99999999999999993
No 71
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=29.42 E-value=7.6 Score=35.58 Aligned_cols=97 Identities=11% Similarity=0.096 Sum_probs=54.2
Q ss_pred HHhccccccccceeeeeccc------cCcc-chhhe---ecceeec----ccchhHHHHHHHHhHhcCCCCCCCeeeeee
Q 020198 91 VKACKPALESSYITKVIHDC------KRDS-EALYF---QFGIKLH----NVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156 (329)
Q Consensus 91 ~~~L~~lLed~~i~KV~hd~------k~Dl-~~L~~---~~Gi~l~----~vfDt~lA~~LL~~~~~~~~l~~~~~sL~~ 156 (329)
+..|..++.+..+ |+||+ .+|+ ..|.+ .+|+... ..+||+-.+..+-+...... .....+|.+
T Consensus 99 l~~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~-~~~~~~L~~ 175 (308)
T 3cg7_A 99 YEQFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKE-LSATTNIGK 175 (308)
T ss_dssp HHHHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCC-CCCCSHHHH
T ss_pred HHHHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccc-cccCcCHHH
Confidence 3455556665433 67887 8998 56642 3566543 36899865544333221100 000246787
Q ss_pred cccCCcccCCccchhHHHHHHHhcCCCCccccchHHHHHHhhcccceehHHHHHHHHHHh
Q 020198 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216 (329)
Q Consensus 157 L~~~~~~Lg~~l~~k~~~~~l~~~~~~~W~~RPLs~~ql~YAA~Da~~Ll~L~~~L~~~L 216 (329)
+++ ++|++..... .-|-.||..+.+|+..|.++.
T Consensus 176 l~~---~~gi~~~~~~-----------------------HrAl~DA~ata~l~~~l~~~~ 209 (308)
T 3cg7_A 176 MNE---YYDLPTIGRA-----------------------HDAMDDCLNIATILQRMINMG 209 (308)
T ss_dssp HHH---HTTCCCCSCT-----------------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHH---HcCCCCCCCC-----------------------cCHHHHHHHHHHHHHHHHHcC
Confidence 775 5676543110 115578888888888876543
No 72
>2do8_A UPF0301 protein HD_1794; NESG, GFT structral genomics, HDR14, structural genomics, PSI, protein structure initiative; NMR {Haemophilus ducreyi} SCOP: d.310.1.1
Probab=28.11 E-value=6 Score=33.81 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=17.7
Q ss_pred cceeEEeccCCCCCCccceeEee
Q 020198 302 CNAEILIGGAKGPPDKDESLHVH 324 (329)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~ 324 (329)
.+.-+++|||-.+ |+.|+||..
T Consensus 68 ~~~~v~~GGPV~~-~rgfvLH~~ 89 (188)
T 2do8_A 68 QDQMVLNGGPVNQ-DRGFIVHSK 89 (188)
T ss_dssp CCCEEEECCSEEE-EEEEEEECC
T ss_pred CCCeEEECCCccC-CcEEEEEeC
Confidence 3557999998765 799999985
No 73
>2haf_A Putative translation repressor; alpha/beta, X-RAY crystallography, structural genomics, PSI, protein structure initiative; 2.88A {Vibrio cholerae} SCOP: d.310.1.1 PDB: 2aj2_A
Probab=25.52 E-value=7.5 Score=33.86 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=27.9
Q ss_pred CCCcceeecccC-ceeeeeec--------------ccceeEEeccCCCCCCccceeEee
Q 020198 281 PGKMGRIIGRRG-SSILAIKE--------------SCNAEILIGGAKGPPDKDESLHVH 324 (329)
Q Consensus 281 ~~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 324 (329)
-|-||++|.|-. .++-.+.+ ..+.-+++|||-.+ |+.|+||..
T Consensus 47 ~GamGlIiNrP~~~~l~~ll~~l~~~~~~~~~~~~~~~~~v~~GGPV~~-~rgfvLH~~ 104 (211)
T 2haf_A 47 DGAMGLMINAPIDITVGGMLKQVDIEPAYPQSHQENLKKPVFNGGPVSE-DRGFILHRP 104 (211)
T ss_dssp TEEEEEESSCEEEEEHHHHHHHTTCCCSSCCCCCSGGGSEEEECCSEEE-EEEEEEECC
T ss_pred CCeeEEEecCCCCCcHHHHHHhhccccccccccccccCCeEEECCCccC-CcEEEEEec
Confidence 466888887763 12221211 24567999998765 799999984
No 74
>2ew0_A Hypothetical protein aciad0353; Q5FF54, ASR1, NESG, structural genomics, PSI, protein struct initiative; 1.40A {Acinetobacter SP} SCOP: d.310.1.1
Probab=24.67 E-value=13 Score=31.78 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=17.2
Q ss_pred ceeEEeccCCCCCCccceeEee
Q 020198 303 NAEILIGGAKGPPDKDESLHVH 324 (329)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~ 324 (329)
+.-+++|||-.+ |+.|+||..
T Consensus 66 ~~~v~~GGPV~~-~rgfvLH~~ 86 (192)
T 2ew0_A 66 PHEVLQGGPLRP-EAGFVLHTG 86 (192)
T ss_dssp CCEEEECCSEEE-EEEEEEEES
T ss_pred CCeeEECCCcCC-CcEEEEEeC
Confidence 557999997765 799999985
Done!