BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020199
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VIS|A Chain A, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
pdb|3VIS|B Chain B, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
Length = 306
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 55 IVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSI-PPPSATNELN 113
I P T+ I G + + S + + + IASHGF+V+A T++ P S +LN
Sbjct: 87 IYYPRENNTYGAIAISPGYTGTQSSIAWLGERIASHGFVVIAIDTNTTLDQPDSRARQLN 146
Query: 114 SAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFAL-SLRYGFGAVIGLDP 170
+A + +N + S +AVMGHS GG L S R A I L P
Sbjct: 147 AALDYMLTDASSAVRN-----RIDASRLAVMGHSMGGGGTLRLASQRPDLKAAIPLTP 199
>pdb|2FX5|A Chain A, Pseudomonas Mendocina Lipase
Length = 258
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 66 VILFLHGTSLSNKSYSKIFDHIASHGFIVVA 96
VIL+ +GT +Y+ + H ASHGF+V A
Sbjct: 51 VILWGNGTGAGPSTYAGLLSHWASHGFVVAA 81
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 64 FNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAE--W 121
+ +++F HG YS I +ASHGFIV A + + + SAAE+ + W
Sbjct: 98 YPLVVFSHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSW 157
Query: 122 LPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSL 158
L + L + E ++ V R + + ALSL
Sbjct: 158 L---YLRTLKQEEETHIRNEQV--RQRAKECSQALSL 189
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 64 FNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAE--W 121
+ +++F HG YS I +ASHGFIV A + + + SAAE+ + W
Sbjct: 98 YPLVVFSHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSW 157
Query: 122 LPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSL 158
L + L + E ++ V R + + ALSL
Sbjct: 158 L---YLRTLKQEEETHIRNEQV--RQRAKECSQALSL 189
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial
Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial
Origin
Length = 309
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 61 KGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQL 99
+G+ +LFLHG S+ + I ++ + G+ VAP L
Sbjct: 26 EGSGQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDL 64
>pdb|4B6G|A Chain A, The Crystal Structure Of The Neisserial Esterase D.
pdb|4B6G|B Chain B, The Crystal Structure Of The Neisserial Esterase D
Length = 283
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 29/118 (24%)
Query: 66 VILFLHGTSLSNKSY---SKIFDHIASHGFIVVAPQLY---TSIPPPSATNELNSA---- 115
VI +L G + + +++ S + A H IVVAP +P A + SA
Sbjct: 53 VIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPNDDAYDLGQSAGFYL 112
Query: 116 -AEVAEW-------------LPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLR 159
A W LP+ ++++ P N + ++MGHS GG A L+LR
Sbjct: 113 NATEQPWAANYQMYDYILNELPRLIEKHFPTNGKR-----SIMGHSMGGHGALVLALR 165
>pdb|2O7R|A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With
Acyl Adduct
pdb|2O7V|A Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently
Inhibited By Paraoxon
Length = 338
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 87 IASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGH 146
+A H +V+A Y P + A E +W+ + L A+ S +MG
Sbjct: 111 MAVHAGVVIASVDYRLAPEHRLPAAYDDAMEALQWIKDSRDEWL--TNFADFSNCFIMGE 168
Query: 147 SRGGQTAFALSLRYGFGA-------VIGL---DPVAGTSKTTG 179
S GG A+ LR A + GL +P G SK TG
Sbjct: 169 SAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTG 211
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 16/132 (12%)
Query: 54 IIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLY---TSIPPPSATN 110
I + AG G +L LHG ++ + KI +A+ F VVA L S P S +
Sbjct: 17 INLVKAGHGA--PLLLLHGYPQTHVMWHKIAPLLAN-NFTVVATDLRGYGDSSRPASVPH 73
Query: 111 ELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSL----RYGFGAVI 166
+N + V Q + ++ V+GH RG + A L+L R A++
Sbjct: 74 HINYSKRVMA------QDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALL 127
Query: 167 GLDPVAGTSKTT 178
+ P +TT
Sbjct: 128 DIAPTHKMYRTT 139
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 107 SATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRY-GFGAV 165
+A N A+VA+ L L N + S V ++GHS G A R G G +
Sbjct: 119 AANNVRVVGAQVAQMLSM-----LSANYSYSPSQVQLIGHSLGAHVAGEAGSRTPGLGRI 173
Query: 166 IGLDPVAGTSKTT 178
GLDPV + + T
Sbjct: 174 TGLDPVEASFQGT 186
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 233 AHFVATDYGHMDILDDNPSDVKSWALSKYFCKN 265
AH VA + G+ DIL+ N SDV+S L KN
Sbjct: 94 AHLVAQELGY-DILEQNASDVRSKTLLNAGVKN 125
>pdb|1W7P|D Chain D, The Crystal Structure Of Endosomal Complex Escrt-Ii
(Vps22VPS25VPS36)
Length = 566
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 15 GTPLLATATLPVF---TRGIYSTKRITLETXXXXXXXXXXXLIIVTPAGKGTFNVILFLH 71
G PLL +F + G+Y K L+ +I + A K T N +
Sbjct: 13 GQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA-KPTQNSL---- 67
Query: 72 GTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVA 119
G L + +Y S GF+ +P+L PS+ +EL +AE A
Sbjct: 68 GLELDDLAYVNY-----SSGFLTRSPRLILFFKDPSSKDELGKSAETA 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,991,634
Number of Sequences: 62578
Number of extensions: 345189
Number of successful extensions: 730
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 21
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)