Query 020200
Match_columns 329
No_of_seqs 230 out of 1186
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 07:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14143 heat shock protein Gr 100.0 2.9E-47 6.2E-52 355.0 24.2 165 147-324 66-230 (238)
2 PRK14161 heat shock protein Gr 100.0 2.6E-47 5.6E-52 342.0 20.0 160 147-318 18-178 (178)
3 PRK14148 heat shock protein Gr 100.0 3E-47 6.4E-52 345.8 20.4 156 148-317 40-195 (195)
4 PRK14155 heat shock protein Gr 100.0 4.8E-47 1E-51 347.4 20.8 155 156-321 21-176 (208)
5 PRK14153 heat shock protein Gr 100.0 3.9E-47 8.5E-52 344.7 19.9 158 150-321 35-192 (194)
6 PRK14163 heat shock protein Gr 100.0 8.3E-47 1.8E-51 346.7 20.3 150 153-323 45-194 (214)
7 PRK14141 heat shock protein Gr 100.0 8.6E-47 1.9E-51 345.8 20.3 158 156-321 39-196 (209)
8 PRK14147 heat shock protein Gr 100.0 9.7E-47 2.1E-51 336.6 19.2 146 156-317 26-171 (172)
9 PRK14151 heat shock protein Gr 100.0 1.1E-46 2.4E-51 337.3 19.5 148 156-316 28-175 (176)
10 PRK14162 heat shock protein Gr 100.0 1.7E-46 3.7E-51 340.6 19.7 149 154-316 45-194 (194)
11 PRK14139 heat shock protein Gr 100.0 2.5E-46 5.3E-51 337.4 20.5 147 154-317 38-184 (185)
12 PRK14158 heat shock protein Gr 100.0 1.8E-46 3.9E-51 340.5 19.6 151 151-316 43-194 (194)
13 PRK14145 heat shock protein Gr 100.0 2.5E-46 5.4E-51 339.9 19.6 150 150-316 47-196 (196)
14 PRK14140 heat shock protein Gr 100.0 3E-46 6.6E-51 338.2 20.2 154 149-316 38-191 (191)
15 COG0576 GrpE Molecular chapero 100.0 5.8E-46 1.2E-50 336.7 20.2 151 155-318 43-193 (193)
16 PRK14160 heat shock protein Gr 100.0 9.4E-46 2E-50 339.3 20.4 158 141-316 54-211 (211)
17 PRK14150 heat shock protein Gr 100.0 9.9E-46 2.2E-50 335.3 19.9 152 149-316 42-193 (193)
18 PRK14146 heat shock protein Gr 100.0 8.6E-46 1.9E-50 340.6 19.7 153 152-318 58-214 (215)
19 PRK14144 heat shock protein Gr 100.0 1.4E-45 3.1E-50 335.5 20.5 161 138-317 39-199 (199)
20 PRK14159 heat shock protein Gr 100.0 9.5E-46 2.1E-50 331.3 18.4 145 157-316 32-176 (176)
21 PRK10325 heat shock protein Gr 100.0 1.7E-45 3.7E-50 334.7 18.9 139 167-318 58-196 (197)
22 PRK14154 heat shock protein Gr 100.0 2.5E-45 5.4E-50 335.8 20.0 147 156-315 60-207 (208)
23 PRK14149 heat shock protein Gr 100.0 4.3E-45 9.2E-50 330.7 19.4 146 157-317 45-190 (191)
24 PRK14157 heat shock protein Gr 100.0 3.4E-44 7.4E-49 331.7 18.2 143 154-317 83-225 (227)
25 KOG3003 Molecular chaperone of 100.0 1.6E-43 3.6E-48 326.4 19.1 162 151-320 74-235 (236)
26 PRK14156 heat shock protein Gr 100.0 3.6E-43 7.9E-48 314.9 18.2 154 143-316 23-177 (177)
27 PRK14142 heat shock protein Gr 100.0 2.1E-42 4.6E-47 318.7 17.9 144 161-324 46-190 (223)
28 PRK14164 heat shock protein Gr 100.0 1.8E-41 3.9E-46 312.4 16.8 139 156-317 78-217 (218)
29 cd00446 GrpE GrpE is the adeni 100.0 4.4E-40 9.5E-45 281.9 16.9 136 165-314 2-137 (137)
30 PF01025 GrpE: GrpE; InterPro 100.0 4.6E-40 1E-44 286.7 12.6 149 154-316 17-165 (165)
31 PF06156 DUF972: Protein of un 85.0 3.2 6.9E-05 35.0 6.4 73 143-215 10-82 (107)
32 PTZ00464 SNF-7-like protein; P 80.9 42 0.0009 31.5 12.7 29 144-172 21-49 (211)
33 COG4026 Uncharacterized protei 74.7 54 0.0012 31.7 11.5 70 144-215 131-200 (290)
34 PF06120 Phage_HK97_TLTM: Tail 73.8 67 0.0014 31.9 12.4 76 140-215 66-147 (301)
35 PF03938 OmpH: Outer membrane 71.7 64 0.0014 27.6 12.0 48 167-214 81-128 (158)
36 PF13805 Pil1: Eisosome compon 70.0 1E+02 0.0022 30.3 12.5 61 159-219 169-229 (271)
37 COG4467 Regulator of replicati 69.8 9.4 0.0002 32.7 4.8 72 143-216 10-84 (114)
38 COG2433 Uncharacterized conser 69.0 1.3E+02 0.0028 32.9 13.9 130 146-299 420-554 (652)
39 KOG2911 Uncharacterized conser 68.1 1.2E+02 0.0027 31.6 13.2 40 136-175 228-267 (439)
40 TIGR03321 alt_F1F0_F0_B altern 67.3 1.1E+02 0.0024 28.7 13.0 102 170-280 91-196 (246)
41 PRK13169 DNA replication intia 67.1 31 0.00068 29.3 7.5 46 143-188 10-55 (110)
42 PF15290 Syntaphilin: Golgi-lo 66.0 1.5E+02 0.0032 29.6 13.3 71 142-215 69-140 (305)
43 cd07627 BAR_Vps5p The Bin/Amph 66.0 55 0.0012 30.2 9.5 53 155-207 143-195 (216)
44 KOG0250 DNA repair protein RAD 65.8 73 0.0016 36.7 11.9 34 249-282 481-517 (1074)
45 PRK07352 F0F1 ATP synthase sub 64.9 94 0.002 27.6 10.5 13 151-163 74-86 (174)
46 PRK14472 F0F1 ATP synthase sub 62.4 1.1E+02 0.0024 27.1 10.5 13 151-163 73-85 (175)
47 COG0711 AtpF F0F1-type ATP syn 62.0 1.1E+02 0.0025 27.0 11.2 75 141-215 51-126 (161)
48 cd07664 BAR_SNX2 The Bin/Amphi 61.1 66 0.0014 30.5 9.2 53 155-207 159-211 (234)
49 PRK05759 F0F1 ATP synthase sub 61.1 1.1E+02 0.0023 26.3 10.6 26 176-201 85-110 (156)
50 cd07623 BAR_SNX1_2 The Bin/Amp 60.6 1.4E+02 0.0029 27.8 11.1 51 156-206 150-200 (224)
51 PF07795 DUF1635: Protein of u 59.2 1.1E+02 0.0024 29.1 10.2 55 142-200 2-60 (214)
52 CHL00019 atpF ATP synthase CF0 59.0 1.3E+02 0.0029 26.9 10.5 25 179-203 119-143 (184)
53 PF14357 DUF4404: Domain of un 58.6 16 0.00035 29.5 4.0 17 245-261 69-85 (85)
54 PF10146 zf-C4H2: Zinc finger- 58.6 1.7E+02 0.0037 27.9 11.5 69 148-217 32-103 (230)
55 KOG3990 Uncharacterized conser 58.1 86 0.0019 30.8 9.4 60 144-208 228-287 (305)
56 PF09006 Surfac_D-trimer: Lung 56.6 29 0.00064 25.4 4.6 27 158-184 2-28 (46)
57 TIGR03185 DNA_S_dndD DNA sulfu 54.8 3E+02 0.0065 29.5 14.4 35 151-185 431-465 (650)
58 PRK00409 recombination and DNA 54.4 1.5E+02 0.0033 32.9 11.9 10 288-297 650-659 (782)
59 PF12761 End3: Actin cytoskele 54.1 1E+02 0.0022 28.9 9.0 27 140-166 95-121 (195)
60 PRK06569 F0F1 ATP synthase sub 53.6 1.7E+02 0.0036 26.5 10.0 73 137-213 51-124 (155)
61 PF09457 RBD-FIP: FIP domain ; 53.5 57 0.0012 24.0 5.8 30 142-171 1-30 (48)
62 PRK14127 cell division protein 52.2 78 0.0017 27.0 7.3 47 140-186 22-68 (109)
63 PF09325 Vps5: Vps5 C terminal 51.6 1.2E+02 0.0026 27.4 9.0 52 157-208 165-216 (236)
64 PRK13460 F0F1 ATP synthase sub 51.1 1.8E+02 0.0039 25.8 10.5 18 149-166 69-86 (173)
65 PRK14150 heat shock protein Gr 50.8 1.3E+02 0.0027 27.9 9.1 24 176-199 55-78 (193)
66 KOG0742 AAA+-type ATPase [Post 49.7 50 0.0011 34.9 6.8 21 162-182 150-170 (630)
67 COG1579 Zn-ribbon protein, pos 49.5 1.2E+02 0.0026 29.2 9.0 49 148-196 110-158 (239)
68 PF11559 ADIP: Afadin- and alp 48.9 1.3E+02 0.0028 25.9 8.5 51 143-193 68-118 (151)
69 KOG1962 B-cell receptor-associ 48.0 48 0.001 31.5 5.9 37 151-187 175-211 (216)
70 PRK14143 heat shock protein Gr 47.1 2.7E+02 0.0058 26.7 12.8 29 164-192 94-122 (238)
71 PF12329 TMF_DNA_bd: TATA elem 46.9 85 0.0018 24.6 6.3 24 146-169 3-26 (74)
72 KOG4196 bZIP transcription fac 46.8 85 0.0018 27.8 6.8 25 160-184 86-110 (135)
73 PF04977 DivIC: Septum formati 46.6 79 0.0017 23.7 6.0 23 159-181 28-50 (80)
74 PRK11637 AmiB activator; Provi 46.4 94 0.002 31.4 8.2 47 148-194 89-135 (428)
75 PRK00888 ftsB cell division pr 46.3 82 0.0018 26.3 6.5 29 154-182 33-61 (105)
76 PF07798 DUF1640: Protein of u 46.1 1.8E+02 0.004 26.0 9.2 54 142-195 45-106 (177)
77 PRK00409 recombination and DNA 46.1 2.1E+02 0.0046 31.8 11.4 28 163-190 538-565 (782)
78 PF06810 Phage_GP20: Phage min 46.0 2.1E+02 0.0046 25.4 9.5 60 143-202 29-92 (155)
79 TIGR03752 conj_TIGR03752 integ 45.5 2.2E+02 0.0049 30.1 10.8 48 143-190 61-108 (472)
80 TIGR01069 mutS2 MutS2 family p 45.4 2.5E+02 0.0054 31.2 11.8 29 161-189 524-552 (771)
81 PRK14473 F0F1 ATP synthase sub 44.8 2.1E+02 0.0046 24.9 10.7 16 150-165 62-77 (164)
82 PF05218 DUF713: Protein of un 44.3 2E+02 0.0043 26.4 9.2 109 170-288 47-157 (182)
83 PRK09039 hypothetical protein; 43.9 2E+02 0.0043 28.7 10.0 37 149-185 145-181 (343)
84 cd07665 BAR_SNX1 The Bin/Amphi 43.6 2.2E+02 0.0047 27.2 9.7 46 155-200 159-204 (234)
85 PRK14163 heat shock protein Gr 43.4 2.9E+02 0.0064 26.2 11.7 30 163-192 66-95 (214)
86 PRK13453 F0F1 ATP synthase sub 42.6 2.5E+02 0.0053 25.0 10.8 119 146-279 43-162 (173)
87 PF03357 Snf7: Snf7; InterPro 42.5 1.9E+02 0.0041 24.6 8.5 15 246-260 107-121 (171)
88 COG3883 Uncharacterized protei 42.4 1.9E+02 0.004 28.4 9.1 53 143-195 54-106 (265)
89 PRK04406 hypothetical protein; 42.2 1.7E+02 0.0037 23.1 8.4 45 143-187 6-50 (75)
90 PRK11637 AmiB activator; Provi 42.1 1.7E+02 0.0037 29.6 9.3 8 288-295 346-353 (428)
91 PRK02793 phi X174 lysis protei 41.9 1.7E+02 0.0036 22.9 8.6 42 145-186 5-46 (72)
92 TIGR01069 mutS2 MutS2 family p 41.7 2.8E+02 0.0061 30.8 11.5 9 288-296 638-646 (771)
93 PF06409 NPIP: Nuclear pore co 41.4 77 0.0017 30.7 6.2 42 150-191 129-170 (265)
94 COG2433 Uncharacterized conser 41.4 3.4E+02 0.0073 29.8 11.5 71 148-218 429-507 (652)
95 PF04977 DivIC: Septum formati 41.2 1.1E+02 0.0023 23.0 6.1 28 147-174 23-50 (80)
96 KOG2856 Adaptor protein PACSIN 40.2 4.5E+02 0.0098 27.4 12.2 57 136-196 169-225 (472)
97 KOG0995 Centromere-associated 39.9 3.7E+02 0.0081 29.2 11.5 36 239-274 370-406 (581)
98 PRK13461 F0F1 ATP synthase sub 39.7 2.5E+02 0.0055 24.3 10.6 19 148-166 57-75 (159)
99 KOG0796 Spliceosome subunit [R 39.2 3.1E+02 0.0068 27.6 10.3 96 148-262 122-234 (319)
100 PRK08476 F0F1 ATP synthase sub 39.0 2.6E+02 0.0055 24.2 11.5 65 146-210 57-122 (141)
101 PF04012 PspA_IM30: PspA/IM30 38.9 2.5E+02 0.0054 25.6 9.1 36 149-184 99-134 (221)
102 PRK04325 hypothetical protein; 38.4 1.9E+02 0.0042 22.6 8.4 44 143-186 4-47 (74)
103 PF03194 LUC7: LUC7 N_terminus 38.0 2.4E+02 0.0052 27.1 9.1 45 196-259 191-235 (254)
104 PF12240 Angiomotin_C: Angiomo 37.7 77 0.0017 29.9 5.5 32 141-172 57-88 (205)
105 PF08172 CASP_C: CASP C termin 37.6 1.3E+02 0.0028 28.9 7.2 43 143-185 88-130 (248)
106 PF13870 DUF4201: Domain of un 37.2 3E+02 0.0064 24.4 9.6 18 144-161 52-69 (177)
107 cd04766 HTH_HspR Helix-Turn-He 36.6 74 0.0016 25.2 4.7 31 139-170 57-87 (91)
108 COG1579 Zn-ribbon protein, pos 36.5 4E+02 0.0087 25.7 13.4 56 152-207 42-97 (239)
109 PF04740 LXG: LXG domain of WX 36.5 3.1E+02 0.0067 24.4 14.0 79 142-220 4-82 (204)
110 PF06698 DUF1192: Protein of u 36.1 1.5E+02 0.0032 22.7 5.9 28 139-166 19-46 (59)
111 TIGR02169 SMC_prok_A chromosom 35.6 6.1E+02 0.013 28.3 13.0 21 239-259 1018-1038(1164)
112 PRK00295 hypothetical protein; 35.3 2.1E+02 0.0045 22.1 7.3 38 149-186 6-43 (68)
113 PRK14474 F0F1 ATP synthase sub 35.3 4E+02 0.0087 25.3 11.0 38 171-208 92-129 (250)
114 PF04102 SlyX: SlyX; InterPro 35.2 2.1E+02 0.0045 22.0 7.6 45 147-191 3-47 (69)
115 PRK00846 hypothetical protein; 35.0 2.4E+02 0.0052 22.7 8.5 52 142-193 7-58 (77)
116 PRK02119 hypothetical protein; 34.9 2.2E+02 0.0048 22.3 8.5 45 144-188 5-49 (73)
117 PRK10869 recombination and rep 34.6 2.6E+02 0.0057 29.7 9.6 28 187-214 362-389 (553)
118 PF06890 Phage_Mu_Gp45: Bacter 34.3 21 0.00046 32.2 1.3 30 47-76 15-45 (162)
119 COG4942 Membrane-bound metallo 34.1 3.6E+02 0.0078 28.2 10.1 43 143-185 54-96 (420)
120 PF07795 DUF1635: Protein of u 33.9 1.7E+02 0.0036 27.9 7.1 46 144-189 15-60 (214)
121 PRK14145 heat shock protein Gr 33.7 3.9E+02 0.0084 25.0 9.5 29 163-191 71-99 (196)
122 COG1196 Smc Chromosome segrega 33.6 6.7E+02 0.015 29.1 13.3 82 154-259 948-1029(1163)
123 cd07622 BAR_SNX4 The Bin/Amphi 33.3 3.9E+02 0.0085 24.6 10.5 35 167-201 138-172 (201)
124 PRK08475 F0F1 ATP synthase sub 33.1 3.5E+02 0.0076 24.0 10.5 36 171-206 109-144 (167)
125 PF04102 SlyX: SlyX; InterPro 33.0 2.3E+02 0.0049 21.8 6.7 44 144-187 7-50 (69)
126 PF08912 Rho_Binding: Rho Bind 33.0 2.5E+02 0.0054 22.3 8.9 46 156-201 11-62 (69)
127 cd00632 Prefoldin_beta Prefold 32.9 2E+02 0.0044 23.4 6.8 33 154-186 69-101 (105)
128 PF08336 P4Ha_N: Prolyl 4-Hydr 32.6 3.1E+02 0.0067 23.2 9.3 63 145-207 19-91 (134)
129 PRK10361 DNA recombination pro 32.5 4.5E+02 0.0098 27.8 10.7 56 160-215 97-156 (475)
130 PF10211 Ax_dynein_light: Axon 32.5 3.9E+02 0.0085 24.4 9.5 38 152-189 124-161 (189)
131 PRK09039 hypothetical protein; 32.5 5.2E+02 0.011 25.8 11.0 35 150-184 118-152 (343)
132 PRK10780 periplasmic chaperone 32.5 3.5E+02 0.0075 23.8 11.4 16 249-264 126-141 (165)
133 COG1322 Predicted nuclease of 32.4 6.1E+02 0.013 26.6 13.9 67 146-212 75-141 (448)
134 PF00170 bZIP_1: bZIP transcri 32.0 2.1E+02 0.0046 21.2 6.7 33 149-181 27-59 (64)
135 KOG0933 Structural maintenance 31.8 9E+02 0.02 28.4 13.5 74 145-218 681-757 (1174)
136 KOG4348 Adaptor protein CMS/SE 31.8 2E+02 0.0043 30.6 7.8 55 141-195 569-623 (627)
137 PF03938 OmpH: Outer membrane 31.7 3.2E+02 0.007 23.2 11.9 19 246-264 116-134 (158)
138 PRK04325 hypothetical protein; 31.7 2.5E+02 0.0055 22.0 7.3 44 143-186 11-54 (74)
139 smart00338 BRLZ basic region l 31.5 2E+02 0.0043 21.4 6.0 34 149-182 27-60 (65)
140 PF06005 DUF904: Protein of un 31.5 2.6E+02 0.0056 22.0 8.7 35 146-180 9-43 (72)
141 TIGR02894 DNA_bind_RsfA transc 31.4 3E+02 0.0066 25.1 8.1 52 140-191 79-140 (161)
142 PRK14160 heat shock protein Gr 31.4 4.5E+02 0.0099 24.8 10.7 26 176-201 78-103 (211)
143 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.3 3.3E+02 0.0072 23.2 8.4 33 162-194 80-112 (132)
144 cd00632 Prefoldin_beta Prefold 31.3 1.7E+02 0.0037 23.8 6.1 37 146-182 68-104 (105)
145 PRK14157 heat shock protein Gr 31.2 4.8E+02 0.01 25.0 14.5 31 160-190 100-130 (227)
146 PLN03217 transcription factor 31.1 2.3E+02 0.0049 23.6 6.6 56 140-195 16-71 (93)
147 PF13094 CENP-Q: CENP-Q, a CEN 31.0 3.3E+02 0.0071 23.8 8.2 52 140-191 19-77 (160)
148 PF05276 SH3BP5: SH3 domain-bi 30.8 4.9E+02 0.011 25.0 11.3 56 161-217 20-75 (239)
149 PRK04406 hypothetical protein; 30.7 2.7E+02 0.0059 22.0 7.3 44 143-186 13-56 (75)
150 PF05529 Bap31: B-cell recepto 30.1 85 0.0019 28.2 4.5 30 158-187 157-186 (192)
151 PRK13410 molecular chaperone D 30.1 6E+02 0.013 27.7 11.6 16 139-154 500-515 (668)
152 COG4026 Uncharacterized protei 29.8 2.7E+02 0.0059 27.1 7.9 28 159-186 132-159 (290)
153 PF01025 GrpE: GrpE; InterPro 29.5 3.7E+02 0.0079 23.2 8.3 42 141-185 18-59 (165)
154 PF10883 DUF2681: Protein of u 29.3 2.5E+02 0.0054 23.1 6.6 38 151-188 26-63 (87)
155 KOG0288 WD40 repeat protein Ti 29.2 2.9E+02 0.0062 29.0 8.4 35 143-177 43-77 (459)
156 PRK14164 heat shock protein Gr 29.1 5E+02 0.011 24.7 9.5 44 143-189 79-122 (218)
157 PRK14153 heat shock protein Gr 28.9 4.7E+02 0.01 24.4 9.2 43 144-189 43-85 (194)
158 PF05529 Bap31: B-cell recepto 28.8 1.4E+02 0.0029 26.9 5.6 20 157-176 170-189 (192)
159 COG0497 RecN ATPase involved i 28.4 3.9E+02 0.0086 28.9 9.6 35 158-192 345-379 (557)
160 PRK13729 conjugal transfer pil 28.1 1.3E+02 0.0028 31.9 5.8 15 154-168 75-89 (475)
161 PRK02119 hypothetical protein; 27.7 3E+02 0.0065 21.5 7.3 44 143-186 11-54 (73)
162 PRK02793 phi X174 lysis protei 27.5 3E+02 0.0065 21.5 7.4 45 143-187 10-54 (72)
163 PF13094 CENP-Q: CENP-Q, a CEN 27.4 4.2E+02 0.009 23.1 10.1 45 148-192 41-85 (160)
164 PTZ00446 vacuolar sorting prot 27.2 5.1E+02 0.011 24.1 12.4 56 197-266 79-134 (191)
165 PHA02109 hypothetical protein 26.9 1.9E+02 0.0041 27.1 6.1 39 140-178 179-223 (233)
166 PRK00736 hypothetical protein; 26.7 3E+02 0.0065 21.2 7.3 42 149-190 6-47 (68)
167 PF13118 DUF3972: Protein of u 26.5 3.7E+02 0.0079 23.6 7.5 46 147-192 77-122 (126)
168 PF06657 Cep57_MT_bd: Centroso 26.4 2.9E+02 0.0063 22.0 6.4 30 143-172 12-41 (79)
169 KOG3647 Predicted coiled-coil 26.4 2.5E+02 0.0053 28.1 7.1 37 151-187 122-158 (338)
170 PRK00736 hypothetical protein; 26.2 3.1E+02 0.0067 21.2 8.1 44 143-186 7-50 (68)
171 PF09304 Cortex-I_coil: Cortex 26.2 4E+02 0.0087 22.8 7.5 41 142-182 31-71 (107)
172 TIGR03752 conj_TIGR03752 integ 25.9 5.7E+02 0.012 27.2 10.1 69 142-215 67-139 (472)
173 PRK06231 F0F1 ATP synthase sub 25.9 5.3E+02 0.011 23.8 12.0 66 143-208 95-172 (205)
174 TIGR02338 gimC_beta prefoldin, 25.7 3.2E+02 0.0069 22.5 6.8 34 154-187 73-106 (110)
175 PF08317 Spc7: Spc7 kinetochor 25.7 2.1E+02 0.0045 28.1 6.6 14 203-216 255-268 (325)
176 PF07106 TBPIP: Tat binding pr 25.6 4.1E+02 0.0088 23.3 7.9 49 141-189 109-165 (169)
177 PF03114 BAR: BAR domain; Int 25.3 4.5E+02 0.0097 22.7 13.2 27 161-187 130-156 (229)
178 PRK00888 ftsB cell division pr 25.3 1.9E+02 0.0041 24.1 5.4 33 144-176 30-62 (105)
179 PF04728 LPP: Lipoprotein leuc 25.1 3.1E+02 0.0068 20.9 6.9 36 146-181 15-50 (56)
180 PF02388 FemAB: FemAB family; 24.9 4.3E+02 0.0094 26.7 8.9 35 239-274 329-365 (406)
181 TIGR02977 phageshock_pspA phag 24.8 5.6E+02 0.012 23.6 10.3 35 150-184 101-135 (219)
182 PF05335 DUF745: Protein of un 24.6 3.3E+02 0.0072 25.2 7.3 38 149-186 138-175 (188)
183 PRK07353 F0F1 ATP synthase sub 24.5 4.2E+02 0.0092 22.2 11.5 70 143-212 52-122 (140)
184 PF14662 CCDC155: Coiled-coil 24.5 6E+02 0.013 23.9 9.9 38 153-190 93-130 (193)
185 PF00170 bZIP_1: bZIP transcri 24.5 3E+02 0.0064 20.4 6.3 18 165-182 29-46 (64)
186 PF11629 Mst1_SARAH: C termina 24.5 2.6E+02 0.0057 20.8 5.3 30 140-172 7-36 (49)
187 PF08317 Spc7: Spc7 kinetochor 24.5 4.2E+02 0.0091 26.0 8.5 12 258-269 291-302 (325)
188 PRK02224 chromosome segregatio 24.4 9.7E+02 0.021 26.3 13.8 9 268-276 458-466 (880)
189 PRK14474 F0F1 ATP synthase sub 23.9 6.3E+02 0.014 24.0 10.9 34 178-211 88-121 (250)
190 PRK13454 F0F1 ATP synthase sub 23.7 5.4E+02 0.012 23.1 11.1 68 146-213 56-123 (181)
191 PRK14159 heat shock protein Gr 23.7 5.7E+02 0.012 23.4 12.0 51 141-191 27-77 (176)
192 KOG0971 Microtubule-associated 23.4 1.2E+03 0.027 27.2 18.8 72 143-215 226-317 (1243)
193 TIGR02894 DNA_bind_RsfA transc 23.2 3.5E+02 0.0075 24.8 7.0 44 145-188 108-151 (161)
194 PRK14158 heat shock protein Gr 23.1 6.1E+02 0.013 23.6 10.5 26 164-189 67-92 (194)
195 PF04849 HAP1_N: HAP1 N-termin 23.1 1.6E+02 0.0034 29.5 5.2 45 141-185 255-306 (306)
196 PF05667 DUF812: Protein of un 23.0 4.5E+02 0.0098 28.5 9.0 76 128-206 315-390 (594)
197 PRK00295 hypothetical protein; 22.6 3.6E+02 0.0079 20.7 8.1 45 143-187 7-51 (68)
198 PRK01558 V-type ATP synthase s 22.5 6E+02 0.013 23.2 10.2 52 154-208 36-87 (198)
199 PRK14155 heat shock protein Gr 22.4 6.5E+02 0.014 23.6 9.9 42 145-189 24-65 (208)
200 KOG1853 LIS1-interacting prote 22.4 7.8E+02 0.017 24.5 10.0 67 150-216 47-129 (333)
201 PRK13455 F0F1 ATP synthase sub 22.4 5.6E+02 0.012 22.8 12.0 64 144-207 75-150 (184)
202 COG5509 Uncharacterized small 22.3 2.4E+02 0.0051 22.0 4.9 25 140-164 24-48 (65)
203 cd00890 Prefoldin Prefoldin is 22.0 4E+02 0.0087 21.7 6.8 43 141-186 83-125 (129)
204 cd07596 BAR_SNX The Bin/Amphip 22.0 5.3E+02 0.012 22.4 11.1 36 160-195 150-185 (218)
205 PF13815 Dzip-like_N: Iguana/D 21.7 3.8E+02 0.0082 22.5 6.6 34 160-193 78-111 (118)
206 PF11068 YlqD: YlqD protein; 21.5 5.5E+02 0.012 22.4 8.4 46 148-193 20-73 (131)
207 PRK08475 F0F1 ATP synthase sub 21.4 5.8E+02 0.013 22.6 12.0 49 164-212 76-124 (167)
208 PRK03947 prefoldin subunit alp 21.3 5.1E+02 0.011 21.9 7.5 28 160-187 106-133 (140)
209 KOG3003 Molecular chaperone of 21.1 6.7E+02 0.015 24.3 8.8 43 161-203 97-143 (236)
210 COG3883 Uncharacterized protei 21.1 5.4E+02 0.012 25.3 8.3 11 203-213 131-141 (265)
211 PF14388 DUF4419: Domain of un 21.1 1.9E+02 0.004 28.5 5.3 40 173-216 142-183 (299)
212 cd07651 F-BAR_PombeCdc15_like 21.1 6.6E+02 0.014 23.2 10.9 52 162-214 150-201 (236)
213 PF11500 Cut12: Spindle pole b 21.1 1.7E+02 0.0038 26.3 4.6 21 175-195 72-92 (152)
214 PTZ00454 26S protease regulato 21.1 3.9E+02 0.0085 27.2 7.8 23 163-185 30-52 (398)
215 CHL00019 atpF ATP synthase CF0 21.1 6E+02 0.013 22.7 12.0 25 179-203 108-132 (184)
216 PLN03184 chloroplast Hsp70; Pr 21.0 1E+03 0.022 25.9 11.2 73 139-216 537-609 (673)
217 PF06005 DUF904: Protein of un 20.8 4.2E+02 0.0091 20.8 10.8 42 146-187 23-64 (72)
218 TIGR03545 conserved hypothetic 20.8 4.4E+02 0.0095 28.3 8.3 13 304-316 339-351 (555)
219 PF10481 CENP-F_N: Cenp-F N-te 20.8 8.6E+02 0.019 24.3 12.0 76 140-218 11-86 (307)
220 PF01920 Prefoldin_2: Prefoldi 20.7 4.2E+02 0.0091 20.8 7.1 33 153-185 67-99 (106)
221 PF14584 DUF4446: Protein of u 20.3 3.3E+02 0.0073 24.2 6.3 54 240-296 64-117 (151)
222 PF00430 ATP-synt_B: ATP synth 20.2 4.8E+02 0.01 21.2 10.5 16 166-181 55-70 (132)
223 PF15035 Rootletin: Ciliary ro 20.1 6.8E+02 0.015 22.9 8.6 39 150-188 83-121 (182)
224 TIGR02302 aProt_lowcomp conser 20.1 4E+02 0.0086 30.3 8.1 60 155-214 523-606 (851)
No 1
>PRK14143 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.9e-47 Score=354.98 Aligned_cols=165 Identities=28% Similarity=0.400 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCC
Q 020200 147 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKID 226 (329)
Q Consensus 147 ~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~ 226 (329)
.+.+..++..++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+++..
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~----- 140 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPE----- 140 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccccc-----
Confidence 344455666778889999999999999999999999999999999999999999999999999999999865320
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEE
Q 020200 227 PSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERV 306 (329)
Q Consensus 227 ~s~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRV 306 (329)
. .....|.+||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|||++|+|+||+|||||
T Consensus 141 --~------~~~~~l~~Gve~i~k~l~~~L~k~GV~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RV 212 (238)
T PRK14143 141 --G------EEAQALHRSYQGLYKQLVDVLKRLGVSPMRVVGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGRV 212 (238)
T ss_pred --c------hhHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChHHhheeeeecCCCCCcCeEEEEeeCCceeCCEe
Confidence 1 12357999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEeecCCCCcccc
Q 020200 307 IRPAEVGVTQAVENDRAE 324 (329)
Q Consensus 307 LRPA~VvVak~~~~~e~~ 324 (329)
||||||+|++++......
T Consensus 213 LRpA~V~Vsk~~~~~~~~ 230 (238)
T PRK14143 213 LRHAMVKVSMGPGPSSPA 230 (238)
T ss_pred cccceEEECCCCCCCCCC
Confidence 999999999987655443
No 2
>PRK14161 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.6e-47 Score=341.95 Aligned_cols=160 Identities=32% Similarity=0.574 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCC
Q 020200 147 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKID 226 (329)
Q Consensus 147 ~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~ 226 (329)
.+-++..+++++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.+
T Consensus 18 ~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~----- 92 (178)
T PRK14161 18 EEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPAN----- 92 (178)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccc-----
Confidence 355667777888899999999999999999999999999999999999999999999999999999999865321
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCE
Q 020200 227 PSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYER 305 (329)
Q Consensus 227 ~s~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~p-vGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dR 305 (329)
. +..+.++++||+||+++|.++|+++||++|+| +|++|||++||||+++++++.++|||++|+|+||+||||
T Consensus 93 --~-----~~~~~~~~~Gv~mi~k~l~~vL~~~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~v~q~GY~l~dR 165 (178)
T PRK14161 93 --S-----DVEVTNIIAGVQMTKDELDKVFHKHHIEEIKPEIGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYKIRDR 165 (178)
T ss_pred --c-----chhHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeeCCCCCCcCEEEEEeeCCcEeCCE
Confidence 1 12346899999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred EeeeeEEEeecCC
Q 020200 306 VIRPAEVGVTQAV 318 (329)
Q Consensus 306 VLRPA~VvVak~~ 318 (329)
|||||+|+|+++|
T Consensus 166 VLRpA~V~Vak~~ 178 (178)
T PRK14161 166 LLRPATVQVVKKP 178 (178)
T ss_pred eecCceEEeCCCC
Confidence 9999999999864
No 3
>PRK14148 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3e-47 Score=345.79 Aligned_cols=156 Identities=35% Similarity=0.557 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCC
Q 020200 148 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDP 227 (329)
Q Consensus 148 kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~ 227 (329)
+.+..+++.++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~------- 112 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVK------- 112 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-------
Confidence 4455566778888999999999999999999999999999999999999999999999999999999986432
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEe
Q 020200 228 SNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVI 307 (329)
Q Consensus 228 s~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVL 307 (329)
. ....+|++||+||+++|.++|+++||++|+|.|++|||++|+||++++++++++|+|++|+|+||+||||||
T Consensus 113 -~------~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVL 185 (195)
T PRK14148 113 -L------EEAIAMKEGIELTAKMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYMLNGRIV 185 (195)
T ss_pred -c------hhHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEee
Confidence 0 124689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeecC
Q 020200 308 RPAEVGVTQA 317 (329)
Q Consensus 308 RPA~VvVak~ 317 (329)
|||+|+|++.
T Consensus 186 RpA~V~Vak~ 195 (195)
T PRK14148 186 RAAKVVIVKN 195 (195)
T ss_pred eccEEEeCCC
Confidence 9999999873
No 4
>PRK14155 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.8e-47 Score=347.39 Aligned_cols=155 Identities=41% Similarity=0.657 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 020200 156 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 235 (329)
Q Consensus 156 ~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~ 235 (329)
+++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.... + .+
T Consensus 21 ~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~------~-----~~ 89 (208)
T PRK14155 21 EIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKD------S-----AD 89 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhccccc------c-----cc
Confidence 455577788999999999999999999999999999999999999999999999999999875321 0 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEEe
Q 020200 236 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 314 (329)
Q Consensus 236 ~~lk~l~eGVemt~kqL~~vL~k~GVe~I~p-vGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~VvV 314 (329)
+.+++|++||+||+++|.++|+++||++|+| +|++|||++||||+++++++.++|||++|+|+||+|+|||||||+|+|
T Consensus 90 ~~~~~i~~Gvemi~k~~~~~L~k~GV~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~V 169 (208)
T PRK14155 90 PAVKNFIIGVEMTEKELLGAFERNGLKKIDPAKGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYELMGRLVRPAMVAV 169 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCceecCCCCCCCChhHhceeeeecCCCCCcCeEEEEeeCCeEeCCEeeccceEEE
Confidence 3467899999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 020200 315 TQAVEND 321 (329)
Q Consensus 315 ak~~~~~ 321 (329)
+++++..
T Consensus 170 ak~~~~~ 176 (208)
T PRK14155 170 AAKGSTG 176 (208)
T ss_pred CCCCCcc
Confidence 9975543
No 5
>PRK14153 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.9e-47 Score=344.70 Aligned_cols=158 Identities=34% Similarity=0.584 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCC
Q 020200 150 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 229 (329)
Q Consensus 150 ~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~ 229 (329)
+..+...++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.+.+
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~-------- 106 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERALESARTA-------- 106 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc--------
Confidence 344555677788899999999999999999999999999999999999999999999999999999865320
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeee
Q 020200 230 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRP 309 (329)
Q Consensus 230 D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRP 309 (329)
..+++|++||+||+++|.++|+++||++|+|+|++|||++|+||++++++++++|||++|+|+||+|+||||||
T Consensus 107 ------~~~~~l~~Gvemi~k~~~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRP 180 (194)
T PRK14153 107 ------EDMNSIVEGIEMVSKQFFSILEKYGLERIECEGEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYALNSKVIRP 180 (194)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChhHhceeeeeCCCCCCcCEEEEEeeCCcEeCCEEeeC
Confidence 12478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCc
Q 020200 310 AEVGVTQAVEND 321 (329)
Q Consensus 310 A~VvVak~~~~~ 321 (329)
|+|+|+++++..
T Consensus 181 A~V~Vak~~~e~ 192 (194)
T PRK14153 181 AMVSVARNPDEE 192 (194)
T ss_pred cEEEECCCCccc
Confidence 999999976543
No 6
>PRK14163 heat shock protein GrpE; Provisional
Probab=100.00 E-value=8.3e-47 Score=346.71 Aligned_cols=150 Identities=28% Similarity=0.424 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCC
Q 020200 153 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTA 232 (329)
Q Consensus 153 ~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~ 232 (329)
++..+..+++++++++|+|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.
T Consensus 45 l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~-------------- 110 (214)
T PRK14163 45 LTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREHG-------------- 110 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhch--------------
Confidence 344566678889999999999999999999999999999999999999999999999999998741
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEE
Q 020200 233 GAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEV 312 (329)
Q Consensus 233 ~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~V 312 (329)
.|+.||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||
T Consensus 111 -------~l~~Gv~mi~k~l~~~L~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRPA~V 183 (214)
T PRK14163 111 -------ELVGGFKSVAESLETTVAKLGLQQFGKEGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYRIGERTIRPARV 183 (214)
T ss_pred -------hHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCcCcCCEeccCceE
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCccc
Q 020200 313 GVTQAVENDRA 323 (329)
Q Consensus 313 vVak~~~~~e~ 323 (329)
+|+++++..++
T Consensus 184 ~Vsk~~~~~~~ 194 (214)
T PRK14163 184 AVAEPQPGAQT 194 (214)
T ss_pred EECCCCCCCCC
Confidence 99998655443
No 7
>PRK14141 heat shock protein GrpE; Provisional
Probab=100.00 E-value=8.6e-47 Score=345.83 Aligned_cols=158 Identities=41% Similarity=0.672 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 020200 156 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 235 (329)
Q Consensus 156 ~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~ 235 (329)
.|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.. .+ ...+
T Consensus 39 ~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~-------~~-~~~~ 110 (209)
T PRK14141 39 PLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAE-------AR-AAAD 110 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccc-------cc-cccc
Confidence 345567788899999999999999999999999999999999999999999999999999876431 00 0112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEEee
Q 020200 236 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVT 315 (329)
Q Consensus 236 ~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~VvVa 315 (329)
+.+++|++||+||+++|.++|+++||++|+++|++|||++||||++++++++++|||++|+|+||+|||||||||+|+|+
T Consensus 111 ~~~~~l~eGv~mi~k~l~~vLek~GV~~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vs 190 (209)
T PRK14141 111 AGLKALIEGVEMTERAMLNALERHGVKKLDPEGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTIGERVLRPAMVGVA 190 (209)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeecccEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCc
Q 020200 316 QAVEND 321 (329)
Q Consensus 316 k~~~~~ 321 (329)
++++..
T Consensus 191 k~~~~~ 196 (209)
T PRK14141 191 KGGPKA 196 (209)
T ss_pred CCCCCc
Confidence 966433
No 8
>PRK14147 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9.7e-47 Score=336.59 Aligned_cols=146 Identities=33% Similarity=0.508 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 020200 156 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 235 (329)
Q Consensus 156 ~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~ 235 (329)
.++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+...
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~~--------------- 90 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAGT--------------- 90 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc---------------
Confidence 34557778899999999999999999999999999999999999999999999999999975321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEEee
Q 020200 236 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVT 315 (329)
Q Consensus 236 ~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~VvVa 315 (329)
...+|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|+|++|+|+||+|+|||||||+|+|+
T Consensus 91 -~~~~l~~Gv~mi~k~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~RvLRpA~V~Va 169 (172)
T PRK14147 91 -EPSPLRDGLELTYKQLLKVAADNGLTLLDPVGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYLLNERLLRPALVVVA 169 (172)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeccCceEEeC
Confidence 1357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 020200 316 QA 317 (329)
Q Consensus 316 k~ 317 (329)
++
T Consensus 170 k~ 171 (172)
T PRK14147 170 KQ 171 (172)
T ss_pred CC
Confidence 75
No 9
>PRK14151 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.1e-46 Score=337.32 Aligned_cols=148 Identities=34% Similarity=0.578 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 020200 156 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 235 (329)
Q Consensus 156 ~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~ 235 (329)
+++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... . +
T Consensus 28 ~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~--------~-----~ 94 (176)
T PRK14151 28 RVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSA--------D-----D 94 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc--------c-----c
Confidence 45556778899999999999999999999999999999999999999999999999999986421 0 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEEee
Q 020200 236 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVT 315 (329)
Q Consensus 236 ~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~VvVa 315 (329)
..+++|++||+||+++|.++|+++||++|++.|++|||++|+||+++++++.++|||++|+|+||+|||||||||+|+|+
T Consensus 95 ~~~~~~~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtI~~v~qkGY~l~dRvLRpA~V~Va 174 (176)
T PRK14151 95 EAIKPMREGVELTLKMFQDTLKRYQLEAVDPHGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYLLNGRLLRPAMVVVS 174 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhcceeeCCCCCCcCeEEEEeeCCcEECCEEecCcEEEec
Confidence 23578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 020200 316 Q 316 (329)
Q Consensus 316 k 316 (329)
+
T Consensus 175 k 175 (176)
T PRK14151 175 K 175 (176)
T ss_pred C
Confidence 7
No 10
>PRK14162 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.7e-46 Score=340.55 Aligned_cols=149 Identities=34% Similarity=0.479 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q 020200 154 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAG 233 (329)
Q Consensus 154 ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~ 233 (329)
+..++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.+.
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~------------- 111 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKAD------------- 111 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-------------
Confidence 3445667888999999999999999999999999999999999999999999999999999986432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCC-CCCCCceEEEeecceeeCCEEeeeeEE
Q 020200 234 AVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDN-SKPPGTVAHVLKSGYTLYERVIRPAEV 312 (329)
Q Consensus 234 ~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~-d~~~gTVveVlqkGY~L~dRVLRPA~V 312 (329)
+..+++|++||+||+++|.++|+++||++|+++|++|||++|+||++++++ +.++|||++|+|+||+|||||||||+|
T Consensus 112 -~~~~~~l~~Gvemi~k~l~~vL~~~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V 190 (194)
T PRK14162 112 -DEAAKQLKKGVQMTLDHLVKALKDHGVTEIKADGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKDRTLRPAMV 190 (194)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhhhheeecCCCCCCcCEEEEEeeCCcEeCCEeeecceE
Confidence 123468999999999999999999999999999999999999999999974 689999999999999999999999999
Q ss_pred Eeec
Q 020200 313 GVTQ 316 (329)
Q Consensus 313 vVak 316 (329)
+|++
T Consensus 191 ~Vak 194 (194)
T PRK14162 191 VVAQ 194 (194)
T ss_pred EeCC
Confidence 9985
No 11
>PRK14139 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.5e-46 Score=337.38 Aligned_cols=147 Identities=41% Similarity=0.611 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q 020200 154 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAG 233 (329)
Q Consensus 154 ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~ 233 (329)
+..++.+++++++++|+|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+..
T Consensus 38 ~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~-------------- 103 (185)
T PRK14139 38 EAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADES-------------- 103 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc--------------
Confidence 344666788899999999999999999999999999999999999999999999999999996421
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEE
Q 020200 234 AVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVG 313 (329)
Q Consensus 234 ~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~Vv 313 (329)
....+|++||+||+++|.++|+++||++|+++|++|||++|+||+++++ +.++|||++|+|+||+|||||||||+|+
T Consensus 104 --~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~-~~~~gtVi~V~qkGY~l~dRVLRPA~V~ 180 (185)
T PRK14139 104 --GDLEKLREGVELTLKQLTSAFEKGRVVEINPVGEKFDPHQHQAISMVPA-EQEPNTVVAVLQKGYTIADRVLRPALVT 180 (185)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHCCCceeCCCCCCCChHHhheeeeecC-CCCcCEEEEEeeCCcEeCCEeccCceEE
Confidence 1246799999999999999999999999999999999999999999998 6799999999999999999999999999
Q ss_pred eecC
Q 020200 314 VTQA 317 (329)
Q Consensus 314 Vak~ 317 (329)
|+++
T Consensus 181 Vak~ 184 (185)
T PRK14139 181 VAAP 184 (185)
T ss_pred eCCC
Confidence 9984
No 12
>PRK14158 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.8e-46 Score=340.46 Aligned_cols=151 Identities=38% Similarity=0.553 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCC
Q 020200 151 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSND 230 (329)
Q Consensus 151 ~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D 230 (329)
..+++.++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+...
T Consensus 43 ~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~---------- 112 (194)
T PRK14158 43 KELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADE---------- 112 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCc----------
Confidence 4455566778889999999999999999999999999999999999999999999999999999985321
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeee
Q 020200 231 TAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRP 309 (329)
Q Consensus 231 ~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~p-vGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRP 309 (329)
..+.+|++||+||+++|.++|+++||++|+| +|++|||++|+||+++++++.++|||++|+|+||+|+||||||
T Consensus 113 -----~~~~~i~~Gv~mi~k~l~~vLek~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRp 187 (194)
T PRK14158 113 -----ESMSAIIEGIRMTLSMLLSTLKKFGVTPVEAEKGTPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYLLNERLLRP 187 (194)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeecCCCCCcCEEEEEeeCCcEeCCEEeec
Confidence 1246899999999999999999999999998 7999999999999999999999999999999999999999999
Q ss_pred eEEEeec
Q 020200 310 AEVGVTQ 316 (329)
Q Consensus 310 A~VvVak 316 (329)
|+|+|+|
T Consensus 188 A~V~VsK 194 (194)
T PRK14158 188 AMVSVAT 194 (194)
T ss_pred ceeEeCC
Confidence 9999985
No 13
>PRK14145 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.5e-46 Score=339.88 Aligned_cols=150 Identities=32% Similarity=0.487 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCC
Q 020200 150 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 229 (329)
Q Consensus 150 ~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~ 229 (329)
+..+.+.+..+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+..
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~~~---------- 116 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALASSG---------- 116 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccc----------
Confidence 3445556777888999999999999999999999999999999999999999999999999999997521
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeee
Q 020200 230 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRP 309 (329)
Q Consensus 230 D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRP 309 (329)
....|.+||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|||++|+|+||+|+||||||
T Consensus 117 -------~~~~l~~Gv~mi~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRP 189 (196)
T PRK14145 117 -------DYNSLKEGIELIYRQFKKILDKFGVKEIEAEGQIFDPYKHHAVMQEEVEGKQPNEIIEVFQKGYYLKDKVIRP 189 (196)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCchhhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeecc
Confidence 1257899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeec
Q 020200 310 AEVGVTQ 316 (329)
Q Consensus 310 A~VvVak 316 (329)
|+|+|++
T Consensus 190 A~V~Vak 196 (196)
T PRK14145 190 SLVKVAK 196 (196)
T ss_pred ceEEeCC
Confidence 9999985
No 14
>PRK14140 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3e-46 Score=338.23 Aligned_cols=154 Identities=38% Similarity=0.552 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCC
Q 020200 149 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPS 228 (329)
Q Consensus 149 l~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s 228 (329)
++.+++..++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~-------- 109 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEAD-------- 109 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------
Confidence 344455567778889999999999999999999999999999999999999999999999999999986421
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEee
Q 020200 229 NDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIR 308 (329)
Q Consensus 229 ~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLR 308 (329)
++.+++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||+.|+|+||+|||||||
T Consensus 110 ------~~~~~~i~~Gv~mi~k~l~~~L~k~GV~~i~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLR 183 (191)
T PRK14140 110 ------DEQTKSLLKGVEMVHRQLLEALKKEGVEVIEAVGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYKLKDRVIR 183 (191)
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCCCCCChHHhccceeeCCCCCCcCeEEEEeeCCeEeCCEEec
Confidence 12357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeec
Q 020200 309 PAEVGVTQ 316 (329)
Q Consensus 309 PA~VvVak 316 (329)
||+|+|++
T Consensus 184 pA~V~Vak 191 (191)
T PRK14140 184 PSMVKVNQ 191 (191)
T ss_pred CcEEEeCC
Confidence 99999985
No 15
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-46 Score=336.72 Aligned_cols=151 Identities=44% Similarity=0.690 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCc
Q 020200 155 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 234 (329)
Q Consensus 155 e~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~ 234 (329)
.++..++.++++++++|+|++|||+|||||++||++++++||+++|+.+||||+|||+||+...... .|
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~-------~d---- 111 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDD-------KD---- 111 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cc----
Confidence 4566677888889999999999999999999999999999999999999999999999999875431 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEEe
Q 020200 235 VPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 314 (329)
Q Consensus 235 ~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~VvV 314 (329)
+. ++|++||+||+++|.++|.++||++|++.|++|||++|+||++++++++++|||++|+|+||+|||||||||||+|
T Consensus 112 -~~-~~l~~Gvem~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRVLRpA~V~V 189 (193)
T COG0576 112 -PE-KALLEGVEMTLDQLLDALEKLGVEEIGPEGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYKLNDRVLRPAMVKV 189 (193)
T ss_pred -hH-HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhheeeecCCCCCCCeEEEEeecCeeeCCEeccceEEEE
Confidence 12 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 020200 315 TQAV 318 (329)
Q Consensus 315 ak~~ 318 (329)
++++
T Consensus 190 ak~~ 193 (193)
T COG0576 190 AKKE 193 (193)
T ss_pred ecCC
Confidence 9864
No 16
>PRK14160 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9.4e-46 Score=339.35 Aligned_cols=158 Identities=32% Similarity=0.463 Sum_probs=147.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhh
Q 020200 141 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKE 220 (329)
Q Consensus 141 ~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~ 220 (329)
....++.+.+..+++.++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+..
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~~~- 132 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAVEG- 132 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc-
Confidence 3455677788888889999999999999999999999999999999999999999999999999999999999997521
Q ss_pred hcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecce
Q 020200 221 NFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGY 300 (329)
Q Consensus 221 ~~~k~~~s~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY 300 (329)
....|++||+||+++|.++|+++||++|++.| +|||++|+||++++++++++|||++|+|+||
T Consensus 133 ----------------~~~~l~~Gv~mi~kql~~vL~k~GVe~I~~~G-~FDP~~HEAv~~~~~~e~~~gtVveV~qkGY 195 (211)
T PRK14160 133 ----------------SVEDLKKGIEMTVKQFKTSLEKLGVEEISTEG-EFDPNLHNAVMHVEDENYGENEIVEVFQKGY 195 (211)
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHHCCCEEeCCCC-CCChHHhceeeeeCCCCCCcCeEEEEeeCCc
Confidence 12469999999999999999999999999999 8999999999999999999999999999999
Q ss_pred eeCCEEeeeeEEEeec
Q 020200 301 TLYERVIRPAEVGVTQ 316 (329)
Q Consensus 301 ~L~dRVLRPA~VvVak 316 (329)
+|||||||||||+|++
T Consensus 196 ~l~dRVLRpA~V~Va~ 211 (211)
T PRK14160 196 KRGDKVIRYSMVKVAN 211 (211)
T ss_pred EeCCEeeecceEEeCC
Confidence 9999999999999984
No 17
>PRK14150 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9.9e-46 Score=335.32 Aligned_cols=152 Identities=41% Similarity=0.624 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCC
Q 020200 149 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPS 228 (329)
Q Consensus 149 l~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s 228 (329)
.+.+++..+..+++ +++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... .
T Consensus 42 ~i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~-------~ 111 (193)
T PRK14150 42 RIAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADK-------E 111 (193)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccc-------c
Confidence 34444444444433 6899999999999999999999999999999999999999999999999975421 0
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEee
Q 020200 229 NDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIR 308 (329)
Q Consensus 229 ~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLR 308 (329)
+..+++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||++|+|+||+|||||||
T Consensus 112 ------~~~~~~~~~Gv~mi~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtI~~v~q~GY~l~drvLR 185 (193)
T PRK14150 112 ------NEALKALIEGVELTLKSLLDTVAKFGVEVVGPVGEPFNPEVHQAISMQESEDHEPNTVMMVMQKGYTLNGRLLR 185 (193)
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCCHhHcceeeeeCCCCCCcCEEEEEeeCCeEeCCEEec
Confidence 12357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeec
Q 020200 309 PAEVGVTQ 316 (329)
Q Consensus 309 PA~VvVak 316 (329)
||+|+|++
T Consensus 186 pA~V~Vsk 193 (193)
T PRK14150 186 PAMVMVSK 193 (193)
T ss_pred ceEEEeCC
Confidence 99999985
No 18
>PRK14146 heat shock protein GrpE; Provisional
Probab=100.00 E-value=8.6e-46 Score=340.64 Aligned_cols=153 Identities=30% Similarity=0.437 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCC
Q 020200 152 EREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDT 231 (329)
Q Consensus 152 e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~ 231 (329)
.++..+..+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+...
T Consensus 58 ~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~~~~----------- 126 (215)
T PRK14146 58 SLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQNQ----------- 126 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-----------
Confidence 334456677889999999999999999999999999999999999999999999999999999975421
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCC----EEe
Q 020200 232 AGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYE----RVI 307 (329)
Q Consensus 232 ~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~d----RVL 307 (329)
++...+|++||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|+|+.|+|+||+|+| |||
T Consensus 127 ---~~~~~~l~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~r~~~RvL 203 (215)
T PRK14146 127 ---SEELKPFVEGVKMILKEFYSVLEKSNVIRFDPKGEPFDPMSMEALSSEEGDQYSEETVIDVYQAGYYYKENEDKFTL 203 (215)
T ss_pred ---cchhhHHHHHHHHHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCeEeCCccCCeec
Confidence 1234789999999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred eeeEEEeecCC
Q 020200 308 RPAEVGVTQAV 318 (329)
Q Consensus 308 RPA~VvVak~~ 318 (329)
|||+|+|++++
T Consensus 204 RpA~V~Vak~~ 214 (215)
T PRK14146 204 RPARVRIGKPK 214 (215)
T ss_pred cCceEEeCCCC
Confidence 99999999854
No 19
>PRK14144 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.4e-45 Score=335.50 Aligned_cols=161 Identities=37% Similarity=0.588 Sum_probs=143.0
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 020200 138 EIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSV 217 (329)
Q Consensus 138 e~~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~ 217 (329)
|..+...++.. +++.++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+
T Consensus 39 ~~~~~~~~~~~----l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~ 114 (199)
T PRK14144 39 EPALGHPSYTA----LEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQALQL 114 (199)
T ss_pred cCCCCchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHc
Confidence 34444444443 33446667889999999999999999999999999999999999999999999999999999986
Q ss_pred hhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEee
Q 020200 218 VKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLK 297 (329)
Q Consensus 218 ~~~~~~k~~~s~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlq 297 (329)
.... . ..++++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||++|+|
T Consensus 115 ~~~~-------~--------~~~i~~Gv~mi~k~l~~~L~k~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~q 179 (199)
T PRK14144 115 ADKN-------S--------DPSMHEGLELTMKLFLDALQKFDVEQIDPLGQTFDPQQHEAMSMQPAPGAPPNSVITVFQ 179 (199)
T ss_pred cccc-------c--------hhHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEee
Confidence 4320 0 146899999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeCCEEeeeeEEEeecC
Q 020200 298 SGYTLYERVIRPAEVGVTQA 317 (329)
Q Consensus 298 kGY~L~dRVLRPA~VvVak~ 317 (329)
+||+|+|||||||+|+|+++
T Consensus 180 kGY~l~dRVLRpA~V~Vskk 199 (199)
T PRK14144 180 KGYKLSDRVIRPARVIVSTK 199 (199)
T ss_pred CCcEECCEEecccEEEecCC
Confidence 99999999999999999874
No 20
>PRK14159 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9.5e-46 Score=331.34 Aligned_cols=145 Identities=34% Similarity=0.528 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchh
Q 020200 157 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVP 236 (329)
Q Consensus 157 l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~~ 236 (329)
++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.+. + .
T Consensus 32 i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~---------~-----~ 97 (176)
T PRK14159 32 QNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECH---------D-----E 97 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc---------c-----c
Confidence 4456778889999999999999999999999999999999999999999999999999986432 1 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEEeec
Q 020200 237 LLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQ 316 (329)
Q Consensus 237 ~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~VvVak 316 (329)
...+|++||+||+++|.++|+++||++|++.| +|||++|+||++++++++++|||++|+|+||+|||||||||+|+|++
T Consensus 98 ~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G-~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~Vak 176 (176)
T PRK14159 98 ISLKIKEGVQNTLDLFLKKLEKHGVALIKEEK-EFDPNLHEAMFHVDSENHQSGEVVQVLQKGYKIADRVIRPTKVSVAK 176 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCcCEecCCCC-CCChHHhhhhheeCCCCCCcCeEEEEeeCCcEeCCEeeecceeEeCC
Confidence 23679999999999999999999999999999 69999999999999999999999999999999999999999999985
No 21
>PRK10325 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.7e-45 Score=334.67 Aligned_cols=139 Identities=40% Similarity=0.619 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHH
Q 020200 167 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVE 246 (329)
Q Consensus 167 lkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~~~lk~l~eGVe 246 (329)
++|+|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... . ...+++|++||+
T Consensus 58 ~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~DnlerAl~~~~~--------~-----~~~~~~l~~Gv~ 124 (197)
T PRK10325 58 ERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADK--------A-----NPDMSAMVEGIE 124 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc--------c-----chhHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999986421 0 123578999999
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEEeecCC
Q 020200 247 MTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQAV 318 (329)
Q Consensus 247 mt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~VvVak~~ 318 (329)
||+++|.++|+++||++|+++|++|||++|+||+++++++.++|+|++|+|+||+|+|||||||+|+|++++
T Consensus 125 m~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~~~Vv~v~qkGY~l~drvlRpA~V~Vsk~~ 196 (197)
T PRK10325 125 LTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAK 196 (197)
T ss_pred HHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeccCceEEeCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854
No 22
>PRK14154 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.5e-45 Score=335.83 Aligned_cols=147 Identities=33% Similarity=0.481 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 020200 156 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 235 (329)
Q Consensus 156 ~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~ 235 (329)
.|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... .+
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~-------------~~ 126 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPAS-------------ED 126 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-------------cc
Confidence 45567788899999999999999999999999999999999999999999999999999986421 01
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEEe
Q 020200 236 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 314 (329)
Q Consensus 236 ~~lk~l~eGVemt~kqL~~vL~k~GVe~I~p-vGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~VvV 314 (329)
+.+++|++||+||+++|.++|+++||++|++ +|++|||++|+||+++++++.++|||++|+|+||+|+|||||||+|+|
T Consensus 127 ~~~~~l~eGvemi~k~l~~vL~k~GVe~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVveV~qkGY~l~dRVLRPA~V~V 206 (208)
T PRK14154 127 PQVKSMRDGMSLTLDLLHNTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQLNGRVLRAARVIV 206 (208)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEEecceEEEe
Confidence 3457899999999999999999999999999 699999999999999999999999999999999999999999999999
Q ss_pred e
Q 020200 315 T 315 (329)
Q Consensus 315 a 315 (329)
+
T Consensus 207 a 207 (208)
T PRK14154 207 A 207 (208)
T ss_pred C
Confidence 7
No 23
>PRK14149 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.3e-45 Score=330.66 Aligned_cols=146 Identities=34% Similarity=0.497 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchh
Q 020200 157 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVP 236 (329)
Q Consensus 157 l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~~ 236 (329)
++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+...+ .
T Consensus 45 ~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~~--------------~ 110 (191)
T PRK14149 45 KEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSAAEV--------------D 110 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc--------------c
Confidence 45567788899999999999999999999999999999999999999999999999999864320 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEEeec
Q 020200 237 LLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQ 316 (329)
Q Consensus 237 ~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~VvVak 316 (329)
...+|++||+||+++|.++|+++||++|++.| +|||++|+||+++++++.++|||++|+|+||+|+|||||||+|+|++
T Consensus 111 ~~~~l~~Gv~mi~k~l~~vL~k~GV~~I~~~G-~FDP~~HEAv~~v~~~~~~~gtVv~V~QkGY~l~dRVLRPA~V~Vak 189 (191)
T PRK14149 111 KESALTKGLELTMEKLHEVLARHGIEGIECLE-EFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSIAK 189 (191)
T ss_pred chHHHHHHHHHHHHHHHHHHHHCCCEEeCCCC-CCChHHhheeeeecCCCCCcCEEEEEeeCCcEeCCEEeeccEEEeCC
Confidence 23579999999999999999999999999998 59999999999999999999999999999999999999999999998
Q ss_pred C
Q 020200 317 A 317 (329)
Q Consensus 317 ~ 317 (329)
+
T Consensus 190 ~ 190 (191)
T PRK14149 190 N 190 (191)
T ss_pred C
Confidence 3
No 24
>PRK14157 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.4e-44 Score=331.66 Aligned_cols=143 Identities=30% Similarity=0.477 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q 020200 154 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAG 233 (329)
Q Consensus 154 ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~ 233 (329)
+..+..+++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+.
T Consensus 83 ~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRAl~~~--------------- 147 (227)
T PRK14157 83 LTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRIREHS--------------- 147 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhcc---------------
Confidence 33455577888999999999999999999999999999999999999999999999999999742
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEE
Q 020200 234 AVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVG 313 (329)
Q Consensus 234 ~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~Vv 313 (329)
.+.+||+||+++|.++|+++||++|+++|++|||++||||++++++++++|||++|+|+||+|+|||||||||+
T Consensus 148 ------~~~~~~~~i~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAV~~~~~~~~~~gtVi~V~QkGY~l~dRVLRPA~V~ 221 (227)
T PRK14157 148 ------EMDDSFKAVAAKIDKAFEKFGVEKFGEKGEDFDPTKHDAILHKPDPDAEKETVDTVVEAGYRIGDRVIRAARVV 221 (227)
T ss_pred ------ccchHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCcCEEEEEeeCCceeCCEeccCceEE
Confidence 13468899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 020200 314 VTQA 317 (329)
Q Consensus 314 Vak~ 317 (329)
|+++
T Consensus 222 Vak~ 225 (227)
T PRK14157 222 VASP 225 (227)
T ss_pred eCCC
Confidence 9983
No 25
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-43 Score=326.38 Aligned_cols=162 Identities=56% Similarity=0.800 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCC
Q 020200 151 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSND 230 (329)
Q Consensus 151 ~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D 230 (329)
+++++.++ ++++..+|+|+|+|.+||++|+|+|+.|..++++.||+|+|++|||.|.|+|++|++++++.+.+.
T Consensus 74 ~~l~~~~k-~~~e~~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~~~~----- 147 (236)
T KOG3003|consen 74 ALLEKVLK-LEKEEQELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEESEKE----- 147 (236)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccc-----
Confidence 33333443 345559999999999999999999999999999999999999999999999999999998753222
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeee
Q 020200 231 TAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPA 310 (329)
Q Consensus 231 ~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA 310 (329)
+.++.++.+++|+.||+++|.++|.+||+++++|+|++||||.||||+++|+..+++|||..|.+.||+||||+||||
T Consensus 148 --d~~~~L~~l~eGl~mte~ql~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~pgtV~~v~k~Gy~L~~R~IRPA 225 (236)
T KOG3003|consen 148 --DQKKDLKDLFEGLSMTEAQLKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEPGTVALVTKKGYKLNGRVIRPA 225 (236)
T ss_pred --ccchHHHHHHhHHHHHHHHHHHHHHHcCceecCCCCCCCCcchhheeEeccccCCCCCeEEEEeccCcccCCeeechh
Confidence 234678999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred EEEeecCCCC
Q 020200 311 EVGVTQAVEN 320 (329)
Q Consensus 311 ~VvVak~~~~ 320 (329)
||+|++++++
T Consensus 226 ~VgV~~~~~~ 235 (236)
T KOG3003|consen 226 MVGVVKGGEN 235 (236)
T ss_pred heeeecCCCC
Confidence 9999998865
No 26
>PRK14156 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.6e-43 Score=314.92 Aligned_cols=154 Identities=33% Similarity=0.495 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhc
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENF 222 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ 222 (329)
.+++....+ +..+++.+++++++++++|+|++|||+|||||++||++++++||.++|+++||||+|||+||+.+...
T Consensus 23 ~~~~~~~~~-~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~-- 99 (177)
T PRK14156 23 VEEVVEETP-EKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVEGL-- 99 (177)
T ss_pred HHHHHhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCccc--
Confidence 444444333 24456678889999999999999999999999999999999999999999999999999999975311
Q ss_pred ccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCC-CCCCCceEEEeeccee
Q 020200 223 LKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDN-SKPPGTVAHVLKSGYT 301 (329)
Q Consensus 223 ~k~~~s~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~-d~~~gTVveVlqkGY~ 301 (329)
..+|.+||+||+++|.++|+++||++|++. +|||++|+||++++++ ++++|||++|+|+||+
T Consensus 100 ---------------~~~l~~Gv~mi~k~l~~~L~~~GV~~i~~~--~FDP~~HEAv~~~~~~~~~~~gtVv~V~qkGY~ 162 (177)
T PRK14156 100 ---------------TDDVKKGLEMVQESLIQALKEEGVEEVAVD--SFDHNLHMAVQTLPADDEHPADSIAQVFQKGYK 162 (177)
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHHCCCeecCCC--CCChhHhhcceeecCCCCCCcCEEEEEeeCCcE
Confidence 135889999999999999999999999985 9999999999999864 5899999999999999
Q ss_pred eCCEEeeeeEEEeec
Q 020200 302 LYERVIRPAEVGVTQ 316 (329)
Q Consensus 302 L~dRVLRPA~VvVak 316 (329)
|||||||||+|+|++
T Consensus 163 l~dRVLRpA~V~Va~ 177 (177)
T PRK14156 163 LHERLLRPAMVVVYN 177 (177)
T ss_pred eCCEEeecceeEeCC
Confidence 999999999999984
No 27
>PRK14142 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.1e-42 Score=318.70 Aligned_cols=144 Identities=26% Similarity=0.401 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHH
Q 020200 161 NEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKS 240 (329)
Q Consensus 161 ~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~~~lk~ 240 (329)
.+++++|+++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... +
T Consensus 46 ~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLpVlDnLERAL~~~~~---------~---------- 106 (223)
T PRK14142 46 EDKVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLGVLDDLERARKHGDL---------E---------- 106 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHhcccc---------c----------
Confidence 346778999999999999999999999999999999999999999999999999975321 0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCC-CCceEEEeecceeeCCEEeeeeEEEeecCCC
Q 020200 241 LLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKP-PGTVAHVLKSGYTLYERVIRPAEVGVTQAVE 319 (329)
Q Consensus 241 l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~-~gTVveVlqkGY~L~dRVLRPA~VvVak~~~ 319 (329)
..+|+||+++|.++|+++||++|+++|++|||++||||+++++++.+ .|+|++|+|+||+|+|||||||||+|++.+-
T Consensus 107 -~~~v~~I~kqL~~iLek~GVe~I~~~Ge~FDP~~HEAv~~ve~~e~~~~~tVveV~QkGYkL~dRVLRPA~V~Vsk~~~ 185 (223)
T PRK14142 107 -SGPLKSVADKLDSALTGLGLVAFGAEGEDFDPVLHEAVQHEGDGGQGSKPVIGTVMRQGYQLGEQVLRHALVGVVDTVV 185 (223)
T ss_pred -cHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCCCCEEEEEecCCcEeCCEeccCceEEECCCCC
Confidence 13578999999999999999999999999999999999999988764 6899999999999999999999999999876
Q ss_pred Ccccc
Q 020200 320 NDRAE 324 (329)
Q Consensus 320 ~~e~~ 324 (329)
...++
T Consensus 186 ~~~~~ 190 (223)
T PRK14142 186 VDAAE 190 (223)
T ss_pred CCccc
Confidence 55443
No 28
>PRK14164 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.8e-41 Score=312.44 Aligned_cols=139 Identities=28% Similarity=0.385 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 020200 156 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 235 (329)
Q Consensus 156 ~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~ 235 (329)
.+..+++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+..
T Consensus 78 ~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~---------------- 141 (218)
T PRK14164 78 EASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDDLDLAEQHGD---------------- 141 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc----------------
Confidence 4556778899999999999999999999999999999999999999999999999999997531
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEEe
Q 020200 236 PLLKSLLEG-VEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 314 (329)
Q Consensus 236 ~~lk~l~eG-Vemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~VvV 314 (329)
+.+| ++||+++|.++|+++||++|+++|++|||++||||+++++++ .++|+.|+|+||+|||||||||||+|
T Consensus 142 -----~~~g~l~~i~~~l~~vL~k~Gve~I~~~Ge~FDP~~HEAV~~~~~~~--~~~V~~V~qkGY~l~dRVLRPA~V~V 214 (218)
T PRK14164 142 -----LNEGPLKAFSDKLTNVLAGLKVEKFGEEGDAFDPEIHEAVQDLSSGD--EKVLGTVLRKGYRMGDRVLRTAMVII 214 (218)
T ss_pred -----ccccHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeecCCC--CCEeeEEeeCCcEECCEeccCceEEe
Confidence 1233 789999999999999999999999999999999999998764 58999999999999999999999999
Q ss_pred ecC
Q 020200 315 TQA 317 (329)
Q Consensus 315 ak~ 317 (329)
+++
T Consensus 215 ak~ 217 (218)
T PRK14164 215 ADP 217 (218)
T ss_pred CCC
Confidence 983
No 29
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=100.00 E-value=4.4e-40 Score=281.91 Aligned_cols=136 Identities=53% Similarity=0.800 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHH
Q 020200 165 KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEG 244 (329)
Q Consensus 165 ~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~~~lk~l~eG 244 (329)
++++++++|++|||+|||||+.+|++++++|++++|+++||||+|+|+||+.+... .+.++.+.+|
T Consensus 2 ~~~~~~~~r~~ae~~N~rkr~~~e~~~~~~~~~~~~~~~ll~v~D~le~a~~~~~~--------------~~~~~~~~~g 67 (137)
T cd00446 2 EELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNLERALEAAKK--------------EEELKNLVEG 67 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------cchHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999986532 0235789999
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEEe
Q 020200 245 VEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 314 (329)
Q Consensus 245 Vemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~VvV 314 (329)
|+||+++|.++|+++||++|++.|++|||++|+||+++++++.++|||++|+++||+++|||||||+|+|
T Consensus 68 ~~~i~~~l~~~L~~~Gv~~i~~~g~~FDp~~Heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V 137 (137)
T cd00446 68 VEMTLKQLLDVLEKHGVEKIEPEGEPFDPNLHEAVMQVPSPDVEPGTVVEVLQKGYKLGDRVLRPAMVVV 137 (137)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCHHHheeeeeecCCCCCcCEEEEEeecCeEECCEEecccEeEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 30
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=100.00 E-value=4.6e-40 Score=286.75 Aligned_cols=149 Identities=46% Similarity=0.721 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q 020200 154 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAG 233 (329)
Q Consensus 154 ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~ 233 (329)
+..++.+++++++++++++|+.|+|+||++|+.++.++++.++.++|+++|||++|+|++|+.+....
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~~~------------ 84 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAKSN------------ 84 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-SHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------------
Confidence 33445567788899999999999999999999999999999999999999999999999999875310
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEE
Q 020200 234 AVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVG 313 (329)
Q Consensus 234 ~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~Vv 313 (329)
+....|.+||.||+++|.++|+++||++|+|.|++|||++|+||+++++++.++|||++|+++||+++|||||||+|+
T Consensus 85 --~~~~~~~~g~~~~~~~l~~~L~~~Gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~ 162 (165)
T PF01025_consen 85 --EEEESLLEGLEMILKQLEDILEKNGVEEIEPVGEPFDPNLHEAVETVPDPDKEPGTIVEVVRPGYRLGGRVLRPAEVV 162 (165)
T ss_dssp --CTCHHHHHHHHHHHHHHHHHHHTTTEEEE--TSSB--TTTEEEEEEECSSSS-CTBEEEECC-EEEETTEEEE-EEEE
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHCCCEecCCCCCCCCHHHheeheecCcCCCCcCeEEEEEecCEEECCEEeeeeEEE
Confidence 123589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eec
Q 020200 314 VTQ 316 (329)
Q Consensus 314 Vak 316 (329)
|+|
T Consensus 163 V~K 165 (165)
T PF01025_consen 163 VSK 165 (165)
T ss_dssp EEE
T ss_pred ecC
Confidence 986
No 31
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=85.03 E-value=3.2 Score=35.04 Aligned_cols=73 Identities=21% Similarity=0.194 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 215 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl 215 (329)
..++.+.+..+-..+..++.++.++-++-.+++-|-+++|+|+.+............-...+-+-.|||.+..
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~LY 82 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARLY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHH
Confidence 3445556666666667777777777777788888899999998776552111112222333555566666554
No 32
>PTZ00464 SNF-7-like protein; Provisional
Probab=80.95 E-value=42 Score=31.51 Aligned_cols=29 Identities=3% Similarity=0.105 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQMQDKVL 172 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~elkdk~l 172 (329)
..|.+.+..++.+++.+..|+..+++.+.
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k 49 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQ 49 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555566666666665543
No 33
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=74.65 E-value=54 Score=31.74 Aligned_cols=70 Identities=21% Similarity=0.178 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 215 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl 215 (329)
-+|+....++.++++++.++..+|.+.+-++.++++..+.|+++=..+. .-++..++.++.-+-+|..-.
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~--s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN--SRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhchhHHHHHHHHH
Confidence 3677777888888888899999999999999999999999886633221 124555555654444454433
No 34
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.85 E-value=67 Score=31.90 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHHHHHH
Q 020200 140 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK------FAIQNFAKALLDVADNLGR 213 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~------~A~e~f~kdLLpVlDnLER 213 (329)
.||..+|...+....+.|.+.++.+++++.++..+...+.+|.+.+...-..... ..+..+.+++-...+.|..
T Consensus 66 ~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~ 145 (301)
T PF06120_consen 66 EMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAV 145 (301)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999988899999999999999999999999999998887654332111111 2234566666666666665
Q ss_pred hh
Q 020200 214 AS 215 (329)
Q Consensus 214 Al 215 (329)
+.
T Consensus 146 ~~ 147 (301)
T PF06120_consen 146 AQ 147 (301)
T ss_pred HH
Confidence 54
No 35
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=71.71 E-value=64 Score=27.61 Aligned_cols=48 Identities=8% Similarity=0.210 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 020200 167 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 214 (329)
Q Consensus 167 lkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERA 214 (329)
+..++.+...++..+....+++....+......+...+-++++.+-..
T Consensus 81 ~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~~ 128 (158)
T PF03938_consen 81 RQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAKE 128 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777888888888888888888888888888877777766543
No 36
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=69.96 E-value=1e+02 Score=30.27 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Q 020200 159 AKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVK 219 (329)
Q Consensus 159 ~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~ 219 (329)
.++.|+..+....+-+-|++.|++|+.-||.-.++-.|+..++..++=+...=.+.+..++
T Consensus 169 ~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Ila~~gk~Ll~lld 229 (271)
T PF13805_consen 169 VLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQAILAEYGKRLLELLD 229 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444444555577999999999999999999999999888877665555555543
No 37
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=69.79 E-value=9.4 Score=32.71 Aligned_cols=72 Identities=19% Similarity=0.107 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHhhh
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAI---QNFAKALLDVADNLGRASS 216 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~---e~f~kdLLpVlDnLERAl~ 216 (329)
.++|...+-.+-.++..+++.+.++-+.--+++-|-+++|+|+... ...+.+. ..-..+..+..|||.+...
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~--~~e~~~~~k~~~~~~~~~~~~dnL~~lY~ 84 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEP--TLEKTAVKKEKPAVKKKGEGYDNLARLYQ 84 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCc--cccchhhhcccccccccCCCchhHHHHHh
Confidence 3455666666666777788888888888889999999999999761 1111111 2334557788888887754
No 38
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.96 E-value=1.3e+02 Score=32.91 Aligned_cols=130 Identities=17% Similarity=0.103 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHhhhhhhhhccc
Q 020200 146 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF-AIQNFAKALLDVADNLGRASSVVKENFLK 224 (329)
Q Consensus 146 L~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~-A~e~f~kdLLpVlDnLERAl~~~~~~~~k 224 (329)
..+.+..++..++.++.++.+|+..+.++.++.++++.+..+-..+.+.. -+..=+..+-.-++.|++.+.--
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~------ 493 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEK------ 493 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH------
Confidence 44555666666667777777777777777777777766655444333322 22233444556667777776521
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCC---CCCCccccceeeeccCC-CCCCCceEEEeecc
Q 020200 225 IDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPIN---EPFDPHRHNAMFQLPDN-SKPPGTVAHVLKSG 299 (329)
Q Consensus 225 ~~~s~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvG---epFDPn~HEAV~~v~s~-d~~~gTVveVlqkG 299 (329)
..-++++.+.|..+.+-++++--+ .| ...+--.|+++...+.. ....|-|+-|..+|
T Consensus 494 -----------------~~~ve~L~~~l~~l~k~~~lE~sG-~g~pvk~ve~~t~~~Ie~~e~~~gik~GDvi~v~~~s 554 (652)
T COG2433 494 -----------------KKRVEELERKLAELRKMRKLELSG-KGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILVEDPS 554 (652)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhhhhcC-CCcceehhhhhhHHHHHhHHHhhccccCcEEEEEcCC
Confidence 123444445555444333332221 11 23444556666655443 35677788887775
No 39
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.11 E-value=1.2e+02 Score=31.60 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=33.3
Q ss_pred chhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 136 ESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSF 175 (329)
Q Consensus 136 ~~e~~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~ 175 (329)
.++.+.+..+|.+-.+.+..+++.++++++..++++.++.
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~ 267 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQAL 267 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999998888888899999999999988876443
No 40
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=67.32 E-value=1.1e+02 Score=28.72 Aligned_cols=102 Identities=8% Similarity=0.068 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHH-
Q 020200 170 KVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMT- 248 (329)
Q Consensus 170 k~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~~~lk~l~eGVemt- 248 (329)
.+..++++.+.++.+...+++..+..+...+-..+.... ++.|-..+... + |.......+..+++++.-.
T Consensus 91 i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la--~~~A~kil~~~---~----d~~~~~~lid~~i~~l~~l~ 161 (246)
T TIGR03321 91 LLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEV--FAIARKVLTDL---A----DTDLEERMVDVFVQRLRTLD 161 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh---c----ChHHHHHHHHHHHHHhhcCC
Confidence 345667777788887877887777777777777776654 34444444321 1 1111123445555555333
Q ss_pred ---HHHHHHHHHhCCCeeeCCCCCCCCccccceee
Q 020200 249 ---EKQLGEVFKKFGVEKFDPINEPFDPHRHNAMF 280 (329)
Q Consensus 249 ---~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~ 280 (329)
...|...+..-|....-...-|.+|...+.+.
T Consensus 162 ~~~~~~l~~~~~~~~~~~~v~sa~~l~~~~~~~i~ 196 (246)
T TIGR03321 162 PDEKAALAEALADSGNPVLVRSAFELPEEQREQIR 196 (246)
T ss_pred HHHHHHHHHHHhCCCCceEEEecCCCCHHHHHHHH
Confidence 23344555666633222235667776555443
No 41
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=67.06 E-value=31 Score=29.35 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 188 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE 188 (329)
..+|.+.+..+-..+..++.++.++-++-.+++-|-+++|+|+.+.
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777888888888888899999999999999874
No 42
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=66.02 E-value=1.5e+02 Score=29.58 Aligned_cols=71 Identities=21% Similarity=0.200 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 020200 142 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEM-ENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 215 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEf-EN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl 215 (329)
.+--|+..+.+-+..|.+.+.||.+|+.++.|.+-|| |.=.-|.+.++ +.+.|. +=|+.|=.|+|.+.--|
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQL--ALKEAR-kEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQL--ALKEAR-KEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHhhh
Confidence 3444666778888888889999999999999999997 44455655443 222222 23556666777665443
No 43
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=65.98 E-value=55 Score=30.15 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020200 155 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDV 207 (329)
Q Consensus 155 e~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpV 207 (329)
+++..++.++.+++.+...+..+|+.+.+++.+|+..-...=+..|-..|...
T Consensus 143 ~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~ 195 (216)
T cd07627 143 EKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIY 195 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778888899999999999999999999998887766555554444433
No 44
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.83 E-value=73 Score=36.69 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCCeeeCCCCC---CCCccccceeeec
Q 020200 249 EKQLGEVFKKFGVEKFDPINE---PFDPHRHNAMFQL 282 (329)
Q Consensus 249 ~kqL~~vL~k~GVe~I~pvGe---pFDPn~HEAV~~v 282 (329)
...+...-..+--.+++|+|. -=||.||-||...
T Consensus 481 L~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~ 517 (1074)
T KOG0250|consen 481 LRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERC 517 (1074)
T ss_pred HHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHH
Confidence 344444444456678899985 5688999888643
No 45
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=64.86 E-value=94 Score=27.58 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 020200 151 KEREELLMAKNEE 163 (329)
Q Consensus 151 ~e~ee~l~~~~~E 163 (329)
++.+..|...+.+
T Consensus 74 ~~~~~~L~~a~~e 86 (174)
T PRK07352 74 AEAQQKLAQAQQE 86 (174)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 46
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=62.35 E-value=1.1e+02 Score=27.10 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 020200 151 KEREELLMAKNEE 163 (329)
Q Consensus 151 ~e~ee~l~~~~~E 163 (329)
++-+..+...+.+
T Consensus 73 ~e~e~~L~~a~~e 85 (175)
T PRK14472 73 RKNRELLAKADAE 85 (175)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 47
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=62.04 E-value=1.1e+02 Score=26.99 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 020200 141 LSRDDLVKLLKEREELLMAKNEEMKQMQDKV-LRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 215 (329)
Q Consensus 141 ~s~~eL~kl~~e~ee~l~~~~~El~elkdk~-lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl 215 (329)
-...+...++++.+.++++.+.+..++.+.. .++....++++++++.+.+..+..|.+.+-...=.+.+.|..-.
T Consensus 51 ~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~ 126 (161)
T COG0711 51 RLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEV 126 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666655443 35566778888888888888888887777766666666665443
No 48
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=61.13 E-value=66 Score=30.54 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020200 155 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDV 207 (329)
Q Consensus 155 e~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpV 207 (329)
.++..++.++.+++.+...+..+|+.+.+++.+|+......-+..|-..|..-
T Consensus 159 dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~f 211 (234)
T cd07664 159 DKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKY 211 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777888899999999999999999999999888766555555444443
No 49
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=61.09 E-value=1.1e+02 Score=26.33 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 176 AEMENVKDRTIREAENSKKFAIQNFA 201 (329)
Q Consensus 176 AEfEN~RKRt~rE~e~ak~~A~e~f~ 201 (329)
++.+..+....++.+.....|...+-
T Consensus 85 ~~~~~~~~~a~~ea~~~~~~a~~~i~ 110 (156)
T PRK05759 85 QIIEEAKAEAEAEAARIKAQAQAEIE 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333
No 50
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=60.60 E-value=1.4e+02 Score=27.81 Aligned_cols=51 Identities=24% Similarity=0.353 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 020200 156 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLD 206 (329)
Q Consensus 156 ~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLp 206 (329)
++..++.++.+++.+..++..+|+++.+++.+|+..-...-+..|=..|..
T Consensus 150 K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~ 200 (224)
T cd07623 150 KLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIK 200 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667888888999999999999999999999988876655555444443
No 51
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=59.24 E-value=1.1e+02 Score=29.07 Aligned_cols=55 Identities=18% Similarity=0.290 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 142 SRDDLVKLLKEREELLMA----KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNF 200 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~----~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f 200 (329)
++|||...+.-..-+|+. .++|+...++. .+.+.|+-+++.+|+++++.....-+
T Consensus 2 s~EELRq~Ll~TTlELE~~k~~A~EElRk~eeq----i~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 2 SMEELRQKLLYTTLELEATKMEANEELRKREEQ----IAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577887544322222332 34444443333 34567888889999999988754433
No 52
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=59.03 E-value=1.3e+02 Score=26.86 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 179 ENVKDRTIREAENSKKFAIQNFAKA 203 (329)
Q Consensus 179 EN~RKRt~rE~e~ak~~A~e~f~kd 203 (329)
+.++...+.+++..+..+...+-..
T Consensus 119 ~~~~~~a~~~ie~Ek~~a~~~l~~e 143 (184)
T CHL00019 119 ERLENYKNETIRFEQQRAINQVRQQ 143 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 53
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=58.65 E-value=16 Score=29.45 Aligned_cols=17 Identities=6% Similarity=0.257 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhCCC
Q 020200 245 VEMTEKQLGEVFKKFGV 261 (329)
Q Consensus 245 Vemt~kqL~~vL~k~GV 261 (329)
+.+|.+.+.++|.+.||
T Consensus 69 l~~~lr~i~~sLa~MGI 85 (85)
T PF14357_consen 69 LAGILRNIMDSLANMGI 85 (85)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 45678999999999997
No 54
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=58.62 E-value=1.7e+02 Score=27.88 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 020200 148 KLLKEREELLMAKNEEMKQMQDKVLRSFAE---MENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSV 217 (329)
Q Consensus 148 kl~~e~ee~l~~~~~El~elkdk~lR~~AE---fEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~ 217 (329)
+.|.+...+...|..|-...-+.+.-..+| +|+.-+.+..|+...+..+ ..+-.++.+..|.+++.+..
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i-~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI-QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455444454 6888888899998866555 67778999999988888765
No 55
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.08 E-value=86 Score=30.81 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 208 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVl 208 (329)
..|+..|+.|+.+|......+-+-..++-.+.||-| .+++++...+.-++.+.+..-.++
T Consensus 228 ~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e-----~~~~~ek~Hke~v~qL~~k~~~~l 287 (305)
T KOG3990|consen 228 QKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKE-----YQKELEKKHKERVQQLQKKKEESL 287 (305)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchh-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333333334445411 225555555555566655444443
No 56
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=56.56 E-value=29 Score=25.43 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 158 MAKNEEMKQMQDKVLRSFAEMENVKDR 184 (329)
Q Consensus 158 ~~~~~El~elkdk~lR~~AEfEN~RKR 184 (329)
..+++++..|+.++.++++.|.-|||-
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888899999888873
No 57
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=54.84 E-value=3e+02 Score=29.55 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 151 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 185 (329)
Q Consensus 151 ~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt 185 (329)
.+++..+.+++.++..++.++.++..+.+.+++..
T Consensus 431 ~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 431 GEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444
No 58
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.42 E-value=1.5e+02 Score=32.85 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=6.2
Q ss_pred CCCceEEEee
Q 020200 288 PPGTVAHVLK 297 (329)
Q Consensus 288 ~~gTVveVlq 297 (329)
..|+|+.+-.
T Consensus 650 ~~g~v~~i~~ 659 (782)
T PRK00409 650 QKGEVLSIPD 659 (782)
T ss_pred ceEEEEEEcC
Confidence 3577777653
No 59
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=54.07 E-value=1e+02 Score=28.89 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=17.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDLVKLLKEREELLMAKNEEMKQ 166 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~~~~~El~e 166 (329)
+-..--|++.+++++++|...+++...
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445777788877777776666554
No 60
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=53.60 E-value=1.7e+02 Score=26.45 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 020200 137 SEIELSRDDLVKLLKEREELLMAKNEEMKQMQDK-VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGR 213 (329)
Q Consensus 137 ~e~~~s~~eL~kl~~e~ee~l~~~~~El~elkdk-~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLER 213 (329)
.++....++..++.++-++.|...+.+...+..+ -.++.|+++-=|+.++.+.....+..+++ +.-++|+|.+
T Consensus 51 ~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~----~~~~~~~~~~ 124 (155)
T PRK06569 51 TQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIED----INLAAKQFRT 124 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
No 61
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=53.47 E-value=57 Score=23.98 Aligned_cols=30 Identities=33% Similarity=0.619 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 142 SRDDLVKLLKEREELLMAKNEEMKQMQDKV 171 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~El~elkdk~ 171 (329)
|.++|...+.+.+..+..++.++.+|++.+
T Consensus 1 s~eeL~~~l~~~e~~~~~k~~~v~eLe~Yi 30 (48)
T PF09457_consen 1 SREELISLLKKQEEENARKDSRVRELEDYI 30 (48)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888888888777777777644
No 62
>PRK14127 cell division protein GpsB; Provisional
Probab=52.21 E-value=78 Score=26.96 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
+.+.+|+..-+.+....++.+.+++.+|++++.|+.+..+.++.|..
T Consensus 22 GYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 22 GYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566666666666667777888888899999888888888888776
No 63
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=51.59 E-value=1.2e+02 Score=27.45 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 020200 157 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 208 (329)
Q Consensus 157 l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVl 208 (329)
+..++.++.+++.++..+..+|+.+-+++.+|++.....=...|-.-|+..+
T Consensus 165 ~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~ 216 (236)
T PF09325_consen 165 VEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYA 216 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666666666554444444444333
No 64
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=51.08 E-value=1.8e+02 Score=25.82 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020200 149 LLKEREELLMAKNEEMKQ 166 (329)
Q Consensus 149 l~~e~ee~l~~~~~El~e 166 (329)
+.++-+..+...+.+..+
T Consensus 69 ~~~e~e~~l~~a~~ea~~ 86 (173)
T PRK13460 69 LLKDYEARLNSAKDEANA 86 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444333
No 65
>PRK14150 heat shock protein GrpE; Provisional
Probab=50.84 E-value=1.3e+02 Score=27.89 Aligned_cols=24 Identities=33% Similarity=0.256 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 176 AEMENVKDRTIREAENSKKFAIQN 199 (329)
Q Consensus 176 AEfEN~RKRt~rE~e~ak~~A~e~ 199 (329)
+++.+...|+..|.++.++.....
T Consensus 55 ~~~kd~~lR~~AefeN~rkR~~kE 78 (193)
T PRK14150 55 AEERDSVLRARAEVENIRRRAEQD 78 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777777776665544
No 66
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=49.69 E-value=50 Score=34.91 Aligned_cols=21 Identities=29% Similarity=0.194 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020200 162 EEMKQMQDKVLRSFAEMENVK 182 (329)
Q Consensus 162 ~El~elkdk~lR~~AEfEN~R 182 (329)
.+...++|++.|.+++-+|-.
T Consensus 150 ~q~arYqD~larkr~~~e~e~ 170 (630)
T KOG0742|consen 150 QQRARYQDKLARKRYEDELEA 170 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445667888887777666543
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=49.47 E-value=1.2e+02 Score=29.16 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 148 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFA 196 (329)
Q Consensus 148 kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A 196 (329)
..+.++.+.++.+++++..+++++.++..++.-++.+..-++..+++.+
T Consensus 110 ~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~ 158 (239)
T COG1579 110 DELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEG 158 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566667777777777788888888888888777777776543
No 68
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=48.91 E-value=1.3e+02 Score=25.93 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 193 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak 193 (329)
.+.+...+..++..++.++.++...+.+...+.+.+.........++++..
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666666666666666666666666666555555443
No 69
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=47.99 E-value=48 Score=31.50 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 151 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 187 (329)
Q Consensus 151 ~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~r 187 (329)
+..++.-..+++|.+++.+.|-|+..|..+++.+++.
T Consensus 175 e~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 175 EKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 3344455667788888888999999999998887653
No 70
>PRK14143 heat shock protein GrpE; Provisional
Probab=47.08 E-value=2.7e+02 Score=26.73 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 164 MKQMQDKVLRSFAEMENVKDRTIREAENS 192 (329)
Q Consensus 164 l~elkdk~lR~~AEfEN~RKRt~rE~e~a 192 (329)
.+++.+--.|+..|.+++++......-..
T Consensus 94 ~AdfeN~RKR~~kE~e~~~~~a~~~~~~~ 122 (238)
T PRK14143 94 AADFDNFRKRTSREQEDLRLQLKCNTLSE 122 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556777778888777765554433
No 71
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.94 E-value=85 Score=24.63 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 146 LVKLLKEREELLMAKNEEMKQMQD 169 (329)
Q Consensus 146 L~kl~~e~ee~l~~~~~El~elkd 169 (329)
+.++++++++.|+.+.+|-+.|-.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSK 26 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444443
No 72
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=46.77 E-value=85 Score=27.81 Aligned_cols=25 Identities=12% Similarity=0.310 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 160 KNEEMKQMQDKVLRSFAEMENVKDR 184 (329)
Q Consensus 160 ~~~El~elkdk~lR~~AEfEN~RKR 184 (329)
+..|++.|+..+.|+.-|.++|+-+
T Consensus 86 L~qqv~~L~~e~s~~~~E~da~k~k 110 (135)
T KOG4196|consen 86 LQQQVEKLKEENSRLRRELDAYKSK 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 73
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.57 E-value=79 Score=23.72 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020200 159 AKNEEMKQMQDKVLRSFAEMENV 181 (329)
Q Consensus 159 ~~~~El~elkdk~lR~~AEfEN~ 181 (329)
.++.++++++.+...+.++.+++
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444443333333333333
No 74
>PRK11637 AmiB activator; Provisional
Probab=46.39 E-value=94 Score=31.45 Aligned_cols=47 Identities=9% Similarity=0.164 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 148 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 194 (329)
Q Consensus 148 kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~ 194 (329)
+.+..++..|+.++.+++.++.++..+.++.+..++.+.+-+..+.+
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555544444444433333
No 75
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.31 E-value=82 Score=26.29 Aligned_cols=29 Identities=17% Similarity=0.386 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 154 EELLMAKNEEMKQMQDKVLRSFAEMENVK 182 (329)
Q Consensus 154 ee~l~~~~~El~elkdk~lR~~AEfEN~R 182 (329)
+.+++.+++++++++.+..++.++.+.++
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344445555555555555555555554
No 76
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=46.09 E-value=1.8e+02 Score=25.96 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 142 SRDDLVKLLKEREELLMAKNEE--------MKQMQDKVLRSFAEMENVKDRTIREAENSKKF 195 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~E--------l~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~ 195 (329)
+..++....-.....+.+++.+ ...++....++++|++.++.++..|+...+.-
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~ 106 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAE 106 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544443334444444333 35566677778888888888887777666653
No 77
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.09 E-value=2.1e+02 Score=31.79 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 163 EMKQMQDKVLRSFAEMENVKDRTIREAE 190 (329)
Q Consensus 163 El~elkdk~lR~~AEfEN~RKRt~rE~e 190 (329)
+++.++.++.+..++++.-+++.+++++
T Consensus 538 ~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 565 (782)
T PRK00409 538 EAEALLKEAEKLKEELEEKKEKLQEEED 565 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 78
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=46.04 E-value=2.1e+02 Score=25.42 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNE---EMKQMQDKVLRSFAEMENVKDRTIREAEN-SKKFAIQNFAK 202 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~---El~elkdk~lR~~AEfEN~RKRt~rE~e~-ak~~A~e~f~k 202 (329)
.+.+..++.+....|+.++. -+++|+.++..++++++-.....+.++.. ...+|+...+.
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~ 92 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALK 92 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554 34455555555555555444444333322 23444444433
No 79
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.48 E-value=2.2e+02 Score=30.08 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 190 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e 190 (329)
...|...+.+++.++..+..+.+.++.+..|+++.-.|+..|++..++
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~ 108 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQ 108 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344555566666667777777777777766666655555555444443
No 80
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.37 E-value=2.5e+02 Score=31.20 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 161 NEEMKQMQDKVLRSFAEMENVKDRTIREA 189 (329)
Q Consensus 161 ~~El~elkdk~lR~~AEfEN~RKRt~rE~ 189 (329)
+.++++.++.+.+.+++.+..+++++++.
T Consensus 524 ~~~~e~~~~~~~~~~~e~~~~~~~l~~~~ 552 (771)
T TIGR01069 524 EKELEQKNEHLEKLLKEQEKLKKELEQEM 552 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555544444
No 81
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=44.82 E-value=2.1e+02 Score=24.94 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 020200 150 LKEREELLMAKNEEMK 165 (329)
Q Consensus 150 ~~e~ee~l~~~~~El~ 165 (329)
.++-+..+...+.+..
T Consensus 62 ~~e~e~~l~~A~~ea~ 77 (164)
T PRK14473 62 KRDYEAELAKARQEAA 77 (164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 82
>PF05218 DUF713: Protein of unknown function (DUF713); InterPro: IPR007883 This family contains proteins of unknown function from Caenorhabditis species.
Probab=44.33 E-value=2e+02 Score=26.35 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHH
Q 020200 170 KVLRSFAEMENVK--DRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEM 247 (329)
Q Consensus 170 k~lR~~AEfEN~R--KRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~~~lk~l~eGVem 247 (329)
++.+...+|++.. ++...+-..-...-+..|....+..+|.|..+...++.=+.+. .| .-.++-|..-+..
T Consensus 47 ~~~~~f~~Fe~~~~~~~~~~e~~~~~~~E~~~l~~~v~~a~~~l~~~f~~L~~L~~~~---~D----~iFlkvLqK~i~~ 119 (182)
T PF05218_consen 47 RLKNRFSDFEDEIKFKKTDEEDEEDLQSEISNLHKSVMSAYNMLENAFENLKKLSEKF---PD----KIFLKVLQKCISD 119 (182)
T ss_pred HHHHHHHHHhHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC----cchHHHHHHHHHH
Confidence 3444556666653 3333333333445677888899999999999887665411110 11 2356777778888
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCC
Q 020200 248 TEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKP 288 (329)
Q Consensus 248 t~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~ 288 (329)
+..+|..+|...+.-.++ -..|+ .+++++..+...+.|
T Consensus 120 va~~L~~il~~l~~~~~~--~~~~~-~L~~~~s~l~~~~Ip 157 (182)
T PF05218_consen 120 VANKLLEILESLDELEND--KDWFQ-KLREAFSRLDPSDIP 157 (182)
T ss_pred HHHHHHHHHHHHHhhcCC--hHHHH-HHHHHHHcCCcccCC
Confidence 888899998887644333 33455 777777776554443
No 83
>PRK09039 hypothetical protein; Validated
Probab=43.94 E-value=2e+02 Score=28.69 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 149 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 185 (329)
Q Consensus 149 l~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt 185 (329)
+++.++.+|..++.+|+..+.+..-..+.++.+++++
T Consensus 145 qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 145 QIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433444444444443
No 84
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=43.61 E-value=2.2e+02 Score=27.17 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 155 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNF 200 (329)
Q Consensus 155 e~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f 200 (329)
+++...+.|+.+++.+...+..+|+.+-+.+.+|+..-...=+..|
T Consensus 159 dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Df 204 (234)
T cd07665 159 DKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDF 204 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566788888888888888999999888888876665444433
No 85
>PRK14163 heat shock protein GrpE; Provisional
Probab=43.39 E-value=2.9e+02 Score=26.15 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 163 EMKQMQDKVLRSFAEMENVKDRTIREAENS 192 (329)
Q Consensus 163 El~elkdk~lR~~AEfEN~RKRt~rE~e~a 192 (329)
-.+++.+--.|+..|.+++++.....+-..
T Consensus 66 ~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~ 95 (214)
T PRK14163 66 LQAEYQNYRRRVERDRVTVKEIAVANLLSE 95 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666788888888887776654433
No 86
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=42.61 E-value=2.5e+02 Score=25.01 Aligned_cols=119 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccC
Q 020200 146 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 225 (329)
Q Consensus 146 L~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~ 225 (329)
|.+.+.+.++.+...-.+.++.+.+....+++++.-....+.+...+...|....-...-.+++....-.+....
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~----- 117 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIE----- 117 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccccee
Q 020200 226 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 279 (329)
Q Consensus 226 ~~s~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~p-vGepFDPn~HEAV 279 (329)
..-..+-.-..-..+++.+-....-+.-... +|...|+..|..+
T Consensus 118 ----------~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll~~~l~~~~~~~l 162 (173)
T PRK13453 118 ----------TAQSEINSQKERAIADINNQVSELSVLIASKVLRKEISEQDQKAL 162 (173)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHH
No 87
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=42.49 E-value=1.9e+02 Score=24.64 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhCC
Q 020200 246 EMTEKQLGEVFKKFG 260 (329)
Q Consensus 246 emt~kqL~~vL~k~G 260 (329)
.-+...|.+.+...+
T Consensus 107 ~~~~d~~~e~~e~~~ 121 (171)
T PF03357_consen 107 EKLMDDFQEEMEDQD 121 (171)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 355667777777766
No 88
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.38 E-value=1.9e+02 Score=28.42 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 195 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~ 195 (329)
.+.|...+.+...++..+++++.+.+..+.++..+++-++.|+....+-..+.
T Consensus 54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 54 IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666666666666677777666666665444444433
No 89
>PRK04406 hypothetical protein; Provisional
Probab=42.25 E-value=1.7e+02 Score=23.11 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 187 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~r 187 (329)
.+.+...+.++|.++.-++.-+++|.+-+.+-+.+++.+++++..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777778877777777777666655443
No 90
>PRK11637 AmiB activator; Provisional
Probab=42.07 E-value=1.7e+02 Score=29.57 Aligned_cols=8 Identities=25% Similarity=0.268 Sum_probs=5.3
Q ss_pred CCCceEEE
Q 020200 288 PPGTVAHV 295 (329)
Q Consensus 288 ~~gTVveV 295 (329)
.+|+|+.+
T Consensus 346 ~~G~V~~~ 353 (428)
T PRK11637 346 ADGRVLLA 353 (428)
T ss_pred CCeEEEEe
Confidence 47777665
No 91
>PRK02793 phi X174 lysis protein; Provisional
Probab=41.90 E-value=1.7e+02 Score=22.88 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 145 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 145 eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
++...+.++|.++.=.+.-+++|.+-+.+-+.+++-+++.+.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~ 46 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR 46 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777766666677777766666666655554443
No 92
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.70 E-value=2.8e+02 Score=30.82 Aligned_cols=9 Identities=22% Similarity=0.645 Sum_probs=5.6
Q ss_pred CCCceEEEe
Q 020200 288 PPGTVAHVL 296 (329)
Q Consensus 288 ~~gTVveVl 296 (329)
..|+|+.+-
T Consensus 638 ~~g~v~~i~ 646 (771)
T TIGR01069 638 QKGKIVQIL 646 (771)
T ss_pred ceEEEEEEc
Confidence 356777664
No 93
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=41.39 E-value=77 Score=30.74 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 150 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 191 (329)
Q Consensus 150 ~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ 191 (329)
+..++-+-.+++.++.+..+...++..|..+|++|.++-.+.
T Consensus 129 l~~ke~E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel 170 (265)
T PF06409_consen 129 LSMKECEHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQEL 170 (265)
T ss_pred HHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 344455566677788888899999999999999988765443
No 94
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.36 E-value=3.4e+02 Score=29.83 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--HHHHHHHHHHHHHhhHHHHHHHHhhhhh
Q 020200 148 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI------REAE--NSKKFAIQNFAKALLDVADNLGRASSVV 218 (329)
Q Consensus 148 kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~------rE~e--~ak~~A~e~f~kdLLpVlDnLERAl~~~ 218 (329)
+.++.++.+...|+.++++++...-.+.++++-++++.. +|+. +.+.+-++.=+.+==..+|-|++-+..+
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555554444444444444444443 3322 1122222222333334566666666544
No 95
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.22 E-value=1.1e+02 Score=22.97 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 147 VKLLKEREELLMAKNEEMKQMQDKVLRS 174 (329)
Q Consensus 147 ~kl~~e~ee~l~~~~~El~elkdk~lR~ 174 (329)
...+.+++.+++.++++.++++.++.++
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444
No 96
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=40.16 E-value=4.5e+02 Score=27.39 Aligned_cols=57 Identities=16% Similarity=0.245 Sum_probs=42.7
Q ss_pred chhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 136 ESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFA 196 (329)
Q Consensus 136 ~~e~~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A 196 (329)
.++..+|+++++|+-. ..++.++++..-+++|..++|++..|.-+.-...+...+..
T Consensus 169 kaDsSvspeq~kKlqd----rveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~C 225 (472)
T KOG2856|consen 169 KADSSVSPEQLKKLQD----RVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQC 225 (472)
T ss_pred ccCccCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 3455689999887754 45567778899999999999999888777766666555443
No 97
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.86 E-value=3.7e+02 Score=29.18 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCe-eeCCCCCCCCcc
Q 020200 239 KSLLEGVEMTEKQLGEVFKKFGVE-KFDPINEPFDPH 274 (329)
Q Consensus 239 k~l~eGVemt~kqL~~vL~k~GVe-~I~pvGepFDPn 274 (329)
....+.++-..-.+.+...+.++. .....|.+|.|+
T Consensus 370 ~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe 406 (581)
T KOG0995|consen 370 EDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPE 406 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCc
Confidence 344555555555666666666665 333456555554
No 98
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=39.68 E-value=2.5e+02 Score=24.33 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020200 148 KLLKEREELLMAKNEEMKQ 166 (329)
Q Consensus 148 kl~~e~ee~l~~~~~El~e 166 (329)
++..+.+..+...+.+..+
T Consensus 57 ~~~~e~~~~l~~a~~ea~~ 75 (159)
T PRK13461 57 ELKLKNERELKNAKEEGKK 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 99
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=39.17 E-value=3.1e+02 Score=27.60 Aligned_cols=96 Identities=22% Similarity=0.276 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhHHHHH
Q 020200 148 KLLKEREELLMAKNEEMKQMQ-----DKVLRSFAEMENVKDRTIREAE------------NSKKFAIQNFAKALLDVADN 210 (329)
Q Consensus 148 kl~~e~ee~l~~~~~El~elk-----dk~lR~~AEfEN~RKRt~rE~e------------~ak~~A~e~f~kdLLpVlDn 210 (329)
+.+.++++.|..+-+++++|= +.-.-+..+.|-++.+-..+.+ ..++..+-.++-.+|.+.|+
T Consensus 122 ~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~~e~e~~~~~~~~~~~~~~~~~qkl~VCeVCGa~L~~~D~ 201 (319)
T KOG0796|consen 122 EKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKAKEKEEAEESYNTTMPGASAQQQKLRVCEVCGAFLSVNDA 201 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhhhhhhhhHHHhhhHHHhccch
Confidence 345556666666655555552 3444555666666651111111 23345566788899999999
Q ss_pred HHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCe
Q 020200 211 LGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVE 262 (329)
Q Consensus 211 LERAl~~~~~~~~k~~~s~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe 262 (329)
=.|.-.++.. .+.-|+.+|...+.++.+..+..
T Consensus 202 d~RlaDHf~G-------------------KlHlGy~~iR~~l~eLk~~~~~~ 234 (319)
T KOG0796|consen 202 DRRLADHFGG-------------------KLHLGYVLIREKLAELKKEKAKR 234 (319)
T ss_pred HHHHHHhhcc-------------------hHHHHHHHHHHHHHHHHHHHhHH
Confidence 9888777632 47889888888888888776653
No 100
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=39.04 E-value=2.6e+02 Score=24.19 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 020200 146 LVKLLKEREELLMAKNEEMKQMQDKV-LRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADN 210 (329)
Q Consensus 146 L~kl~~e~ee~l~~~~~El~elkdk~-lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDn 210 (329)
+..+.++.++.+...+.+...+.+.. ..+.++.+..+....++.+..+..|...+-...-.....
T Consensus 57 a~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~ 122 (141)
T PRK08476 57 VSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQ 122 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333322 344445555555555555555555555544444443333
No 101
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=38.88 E-value=2.5e+02 Score=25.57 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 149 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 184 (329)
Q Consensus 149 l~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKR 184 (329)
.+..++..+.....++..|+..+.++...+..++.+
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555554443
No 102
>PRK04325 hypothetical protein; Provisional
Probab=38.45 E-value=1.9e+02 Score=22.64 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
+..+...+.++|.++.=.+.-+++|.+-+.+-+.+++.+++++.
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~ 47 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLR 47 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777766666677777666666666655554443
No 103
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=37.98 E-value=2.4e+02 Score=27.08 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=31.3
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC
Q 020200 196 AIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKF 259 (329)
Q Consensus 196 A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~ 259 (329)
-+-.+.-.+|.+.|+-.|.-.++.. .++-|+..|...+..+.++.
T Consensus 191 ~VCeVCGA~Ls~~D~d~RladH~~G-------------------K~HlGy~~IR~~l~el~e~~ 235 (254)
T PF03194_consen 191 EVCEVCGAFLSVGDNDRRLADHFGG-------------------KQHLGYAKIREKLKELKEKR 235 (254)
T ss_pred cchhhhhhHHhccchHHHHHHHhcc-------------------chhhhHHHHHHHHHHHHHHH
Confidence 3456777999999998888777632 35667777766666655443
No 104
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=37.67 E-value=77 Score=29.93 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 141 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVL 172 (329)
Q Consensus 141 ~s~~eL~kl~~e~ee~l~~~~~El~elkdk~l 172 (329)
.+...|.+++.++++.|-.++.+...|..+|+
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad~~kWEqkYL 88 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEADMTKWEQKYL 88 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999998885
No 105
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=37.63 E-value=1.3e+02 Score=28.93 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 185 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt 185 (329)
+|-..+...++|+++.....++..++.++..++||--.+-.++
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888888888877777777755554443
No 106
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.21 E-value=3e+02 Score=24.40 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020200 144 DDLVKLLKEREELLMAKN 161 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~ 161 (329)
..+.+.++++..+|..++
T Consensus 52 ~~l~~kIeERn~eL~~Lk 69 (177)
T PF13870_consen 52 QQLNEKIEERNKELLKLK 69 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 107
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=36.61 E-value=74 Score=25.15 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=13.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 139 IELSRDDLVKLLKEREELLMAKNEEMKQMQDK 170 (329)
Q Consensus 139 ~~~s~~eL~kl~~e~ee~l~~~~~El~elkdk 170 (329)
.+++.+++...+. +.++++.+++++++++++
T Consensus 57 ~g~~l~~i~~~l~-l~~~~~~l~~~l~~l~~~ 87 (91)
T cd04766 57 LGVNLAGVKRILE-LEEELAELRAELDELRAR 87 (91)
T ss_pred cCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3455555544443 333344444444444433
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.54 E-value=4e+02 Score=25.70 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020200 152 EREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDV 207 (329)
Q Consensus 152 e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpV 207 (329)
.+...+..++.++++++.++.+...|..-+|+|..+..+....--.++-+.+|-.=
T Consensus 42 ~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E 97 (239)
T COG1579 42 ALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIE 97 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 33444556677888888888888888888888887766555333333333333333
No 109
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.47 E-value=3.1e+02 Score=24.39 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhh
Q 020200 142 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKE 220 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~ 220 (329)
...+|..........++....++..++..+....-.=..|+=.+..-..........+++..+..+++.+..++..++.
T Consensus 4 d~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~ 82 (204)
T PF04740_consen 4 DVSELHSQAESTNSSLKELKEQLESLQKAINQFISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKD 82 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455666666655556666666666655444333222226656555555556666677888888888888887755544
No 110
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=36.14 E-value=1.5e+02 Score=22.71 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=20.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 139 IELSRDDLVKLLKEREELLMAKNEEMKQ 166 (329)
Q Consensus 139 ~~~s~~eL~kl~~e~ee~l~~~~~El~e 166 (329)
..+|.+||...|+.++.+|..++.++..
T Consensus 19 s~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 19 SLLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999998888877777666555443
No 111
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=35.57 E-value=6.1e+02 Score=28.30 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 020200 239 KSLLEGVEMTEKQLGEVFKKF 259 (329)
Q Consensus 239 k~l~eGVemt~kqL~~vL~k~ 259 (329)
..|..+|..|...|..+|..+
T Consensus 1018 ~~f~~~f~~~~~~f~~~~~~l 1038 (1164)
T TIGR02169 1018 EVFMEAFEAINENFNEIFAEL 1038 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888886655
No 112
>PRK00295 hypothetical protein; Provisional
Probab=35.28 E-value=2.1e+02 Score=22.09 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 149 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 149 l~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
.+.+++.++.-.+.-+++|.+-+.+-+.+++-+++.+.
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~ 43 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555566666666666655555554443
No 113
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=35.25 E-value=4e+02 Score=25.35 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 020200 171 VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 208 (329)
Q Consensus 171 ~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVl 208 (329)
+..++++.+.++.+..++++..+..+...+-..+....
T Consensus 92 l~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la 129 (250)
T PRK14474 92 LNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQM 129 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666655543
No 114
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.18 E-value=2.1e+02 Score=21.98 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 147 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 191 (329)
Q Consensus 147 ~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ 191 (329)
...+.+++.++.-++.-+++|.+-+.+-..+++-+++++..=.+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666655555443333
No 115
>PRK00846 hypothetical protein; Provisional
Probab=35.00 E-value=2.4e+02 Score=22.67 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 142 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 193 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak 193 (329)
-.+++...+.+++..+.-.+.-+++|.+-+.+.+..++.+++.+..=.+..+
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888887778888888888888888777777665554443
No 116
>PRK02119 hypothetical protein; Provisional
Probab=34.86 E-value=2.2e+02 Score=22.28 Aligned_cols=45 Identities=7% Similarity=0.118 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 188 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE 188 (329)
..+...+.++|.++.-.+.-+++|.+-+.+-+.+++-+++.+..=
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777776666555443
No 117
>PRK10869 recombination and repair protein; Provisional
Probab=34.56 E-value=2.6e+02 Score=29.66 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 020200 187 REAENSKKFAIQNFAKALLDVADNLGRA 214 (329)
Q Consensus 187 rE~e~ak~~A~e~f~kdLLpVlDnLERA 214 (329)
.++...|+.+...|.+.+...+.+|.+.
T Consensus 362 ~~LS~~R~~aA~~l~~~v~~~L~~L~m~ 389 (553)
T PRK10869 362 QKLHQSRQRYAKELAQLITESMHELSMP 389 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4555666667777777777777776653
No 118
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=34.25 E-value=21 Score=32.22 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=22.3
Q ss_pred ccccccccccccc-ccccccccccccCCCCC
Q 020200 47 KLTQVSLFHQTTL-NSSIFQRFGFSSASPEP 76 (329)
Q Consensus 47 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 76 (329)
+..|+.++..-.+ +-..||.|||+|.-|.-
T Consensus 15 Q~vQv~~~agE~~~~ve~~q~yGftS~Pp~G 45 (162)
T PF06890_consen 15 QTVQVQGLAGETRDDVERFQQYGFTSVPPPG 45 (162)
T ss_pred EEEEEEecCCchhcCcchhhcCccccCCCCC
Confidence 4488988876555 45789999999976543
No 119
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.08 E-value=3.6e+02 Score=28.17 Aligned_cols=43 Identities=7% Similarity=0.209 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 185 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt 185 (329)
..+..+..+.++..|+.++.++..+..++.++..+..++++++
T Consensus 54 i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 54 IREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 3344445555666666677777777777777777776666554
No 120
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=33.90 E-value=1.7e+02 Score=27.92 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 189 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~ 189 (329)
-||.....+-.+++.+.+.++..|++-+.+++.|-|..|...++=+
T Consensus 15 lELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 15 LELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666777888888899999999999999888888888766
No 121
>PRK14145 heat shock protein GrpE; Provisional
Probab=33.75 E-value=3.9e+02 Score=24.99 Aligned_cols=29 Identities=7% Similarity=-0.047 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 163 EMKQMQDKVLRSFAEMENVKDRTIREAEN 191 (329)
Q Consensus 163 El~elkdk~lR~~AEfEN~RKRt~rE~e~ 191 (329)
-.+++.+--.|+..|.++++++.....-.
T Consensus 71 ~~AEfeN~rkR~~kE~e~~~~~a~e~~~~ 99 (196)
T PRK14145 71 LKAEFENYRKRTEKEKSEMVEYGKEQVIL 99 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677888888777776655433
No 122
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.63 E-value=6.7e+02 Score=29.06 Aligned_cols=82 Identities=21% Similarity=0.361 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q 020200 154 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAG 233 (329)
Q Consensus 154 ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~ 233 (329)
+..+..++.+++.+..=-+++..+|+.+.+|...-..+... +..-.+.|..++..+++-.
T Consensus 948 ~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~d--l~~a~~~l~~~i~~~d~~~------------------ 1007 (1163)
T COG1196 948 EREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRED--LEEAKEKLLEVIEELDKEK------------------ 1007 (1163)
T ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH------------------
Confidence 33344444445555444467888888888887654443332 2333445555555554332
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhC
Q 020200 234 AVPLLKSLLEGVEMTEKQLGEVFKKF 259 (329)
Q Consensus 234 ~~~~lk~l~eGVemt~kqL~~vL~k~ 259 (329)
...|.+.|.-|.+.|..+|..+
T Consensus 1008 ----~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 1008 ----RERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHh
Confidence 2467888999999999999887
No 123
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=33.27 E-value=3.9e+02 Score=24.64 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 167 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFA 201 (329)
Q Consensus 167 lkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~ 201 (329)
++..+..+...++-|-+++.+|.+.-...=...|-
T Consensus 138 l~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk 172 (201)
T cd07622 138 GEEAVKEAKDELNEFVKKALEDVERFKKQKVRDLK 172 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555554444333333
No 124
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=33.11 E-value=3.5e+02 Score=24.02 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 020200 171 VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLD 206 (329)
Q Consensus 171 ~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLp 206 (329)
..++..+.++++.+..++++..+..++..+=..++.
T Consensus 109 i~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~ 144 (167)
T PRK08475 109 EKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLN 144 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777776666666666665555543
No 125
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=33.01 E-value=2.3e+02 Score=21.77 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 187 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~r 187 (329)
.+|...++=.+..++.+...+.+...++.++...+..++.|+..
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666666666666654
No 126
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=33.00 E-value=2.5e+02 Score=22.27 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHH
Q 020200 156 LLMAKNEEMKQMQDKVLRSFA---EMENVKDRTIREAE---NSKKFAIQNFA 201 (329)
Q Consensus 156 ~l~~~~~El~elkdk~lR~~A---EfEN~RKRt~rE~e---~ak~~A~e~f~ 201 (329)
+.+++..+++...+.+.+... ++++++...++.+. -.+..|+-+++
T Consensus 11 EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK~QAVNKLA 62 (69)
T PF08912_consen 11 EKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLKQQAVNKLA 62 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555544443 34555555444432 34555555544
No 127
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.86 E-value=2e+02 Score=23.41 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 154 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 154 ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
+..++.++.+++.+..++..+..++.+++.++.
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666666666666654
No 128
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=32.63 E-value=3.1e+02 Score=23.23 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020200 145 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENV----------KDRTIREAENSKKFAIQNFAKALLDV 207 (329)
Q Consensus 145 eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~----------RKRt~rE~e~ak~~A~e~f~kdLLpV 207 (329)
.|...+.++++.+..++.-+++++.....+..|.+.| -||+..+-.....+..+..-.+++.-
T Consensus 19 ~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~d~e~yl~nPlnaF~LIrRl~~dW~~~~~~~~~~~~~~~~~~ 91 (134)
T PF08336_consen 19 NLRNYIEELQEKLDTLKRFLDEMKREHEKAKSDPEEYLSNPLNAFSLIRRLHQDWPKWEKLMEQPVGQEQLQN 91 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHH
Confidence 3445556666666666666666666555555544444 46666666666666666655554333
No 129
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.55 E-value=4.5e+02 Score=27.85 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHhh
Q 020200 160 KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF----AIQNFAKALLDVADNLGRAS 215 (329)
Q Consensus 160 ~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~----A~e~f~kdLLpVlDnLERAl 215 (329)
.+++++.+.+.-.++..+|+|+-.++-.+....... .+..+++-|=.-++.|+.-+
T Consensus 97 ~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v 156 (475)
T PRK10361 97 ADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQV 156 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444555555677788888877765554443333 33333333333344444443
No 130
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=32.53 E-value=3.9e+02 Score=24.40 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 152 EREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 189 (329)
Q Consensus 152 e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~ 189 (329)
.++..++.++.++.+|+.+...+.+..+...++....+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~ 161 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELR 161 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666666666666555443
No 131
>PRK09039 hypothetical protein; Validated
Probab=32.52 E-value=5.2e+02 Score=25.80 Aligned_cols=35 Identities=9% Similarity=0.032 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 150 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 184 (329)
Q Consensus 150 ~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKR 184 (329)
+..+...|...+.++.+..-++.++.++++.+|+.
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555556666666555
No 132
>PRK10780 periplasmic chaperone; Provisional
Probab=32.51 E-value=3.5e+02 Score=23.80 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=9.2
Q ss_pred HHHHHHHHHhCCCeee
Q 020200 249 EKQLGEVFKKFGVEKF 264 (329)
Q Consensus 249 ~kqL~~vL~k~GVe~I 264 (329)
.+-+..+=+..|+.-|
T Consensus 126 ~~ai~~vak~~gy~~V 141 (165)
T PRK10780 126 QTAVKSVANKQGYDLV 141 (165)
T ss_pred HHHHHHHHHHcCCeEE
Confidence 3445566666776554
No 133
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=32.37 E-value=6.1e+02 Score=26.61 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020200 146 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLG 212 (329)
Q Consensus 146 L~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLE 212 (329)
+..+.+.+...+....+++..+.+...++..+|++..+++..+.......-.+..++.|+.+.-...
T Consensus 75 l~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~ 141 (448)
T COG1322 75 LNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVL 141 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666777888888999999999999999998888887777777777776654433
No 134
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=31.97 E-value=2.1e+02 Score=21.17 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 149 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENV 181 (329)
Q Consensus 149 l~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~ 181 (329)
.+.+++..+..+..+...|+..+..+..++..+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555544444444444443
No 135
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.81 E-value=9e+02 Score=28.39 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhh
Q 020200 145 DLVKLLKEREELLMAKNEEMKQMQD---KVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVV 218 (329)
Q Consensus 145 eL~kl~~e~ee~l~~~~~El~elkd---k~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~ 218 (329)
++...+...+..++.++++++.++. ++.++.+++++-.+-+.--..++...--..++.++-.+.+.++-.-..+
T Consensus 681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~I 757 (1174)
T KOG0933|consen 681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQI 757 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666665543 4556666666655544444444444444555555555555555544443
No 136
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=31.77 E-value=2e+02 Score=30.56 Aligned_cols=55 Identities=20% Similarity=0.162 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 141 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 195 (329)
Q Consensus 141 ~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~ 195 (329)
.+.++|..++-++...++.++++-..--++++.-+-|-.-+|-|++-|++++++.
T Consensus 569 ~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka 623 (627)
T KOG4348|consen 569 NSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKA 623 (627)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 5677777777777777766665554444455555555566778888888887754
No 137
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=31.72 E-value=3.2e+02 Score=23.21 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhCCCeee
Q 020200 246 EMTEKQLGEVFKKFGVEKF 264 (329)
Q Consensus 246 emt~kqL~~vL~k~GVe~I 264 (329)
..|..-+..+-++.|+.-|
T Consensus 116 ~~i~~~v~~~a~~~g~~~V 134 (158)
T PF03938_consen 116 KKINKAVEEYAKENGYDLV 134 (158)
T ss_dssp HHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHHcCCeEE
Confidence 3445666777788888776
No 138
>PRK04325 hypothetical protein; Provisional
Probab=31.72 E-value=2.5e+02 Score=21.98 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
..+|...++=.+..++.+.+.+.+....+.++...+..+..|+.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777777764
No 139
>smart00338 BRLZ basic region leucin zipper.
Probab=31.55 E-value=2e+02 Score=21.36 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 149 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 182 (329)
Q Consensus 149 l~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~R 182 (329)
.+.+++..+..+..+..+|..++..+..+...++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555544
No 140
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.52 E-value=2.6e+02 Score=22.00 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 146 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMEN 180 (329)
Q Consensus 146 L~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN 180 (329)
|...+...-+.+..++.++++++++...+..+-+-
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~ 43 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEE 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44444444445555556666666554444433333
No 141
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=31.44 E-value=3e+02 Score=25.13 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDLVKLLKERE----------ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 191 (329)
Q Consensus 140 ~~s~~eL~kl~~e~e----------e~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ 191 (329)
.++.+++..-+..+. .+.+.++.++.+|+.++..+.++.+.+.++...=.++
T Consensus 79 ~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 79 SLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred cCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466676654433332 3445566667777777777777766666665443333
No 142
>PRK14160 heat shock protein GrpE; Provisional
Probab=31.39 E-value=4.5e+02 Score=24.80 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 176 AEMENVKDRTIREAENSKKFAIQNFA 201 (329)
Q Consensus 176 AEfEN~RKRt~rE~e~ak~~A~e~f~ 201 (329)
+++.+-..|+..+.++.++......-
T Consensus 78 ~elkd~~lR~~AefeN~RKR~~kE~e 103 (211)
T PRK14160 78 EALKDRLLRTVAEYDNYRKRTAKEKE 103 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677777777777655543
No 143
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.35 E-value=3.3e+02 Score=23.18 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 162 EEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 194 (329)
Q Consensus 162 ~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~ 194 (329)
.++...+..+....+.|+.-|.++++++..+..
T Consensus 80 ~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 80 AEAESAKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333333334444444444555555555554443
No 144
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.26 E-value=1.7e+02 Score=23.83 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 146 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 182 (329)
Q Consensus 146 L~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~R 182 (329)
|.+.++.++..++.++++++++..++..+.+++..+.
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555666666666666666666666666665543
No 145
>PRK14157 heat shock protein GrpE; Provisional
Probab=31.21 E-value=4.8e+02 Score=25.01 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 160 KNEEMKQMQDKVLRSFAEMENVKDRTIREAE 190 (329)
Q Consensus 160 ~~~El~elkdk~lR~~AEfEN~RKRt~rE~e 190 (329)
+..-.+++.+--.|+..|.+.++++....+-
T Consensus 100 llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~ 130 (227)
T PRK14157 100 LQRERAEFINYRNRTQKEQDRFRQHGIIDVL 130 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666667888888888877765543
No 146
>PLN03217 transcription factor ATBS1; Provisional
Probab=31.11 E-value=2.3e+02 Score=23.62 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 195 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~ 195 (329)
.++.|+|..++-.+..+|-+...--..-+---.+.+.|.=||.|.+.+|+.+.-+.
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer 71 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER 71 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888887777755432111113345677889999999999999887644
No 147
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.01 E-value=3.3e+02 Score=23.75 Aligned_cols=52 Identities=12% Similarity=0.218 Sum_probs=25.7
Q ss_pred cCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDLVKLLKEREELLM-------AKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 191 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~-------~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ 191 (329)
.+..+.+......++..|. .+++++......+.+-.+.+..+++.++.....
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e 77 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERE 77 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444444444444 555555555555555555555555555444333
No 148
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=30.75 E-value=4.9e+02 Score=25.00 Aligned_cols=56 Identities=7% Similarity=0.138 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 020200 161 NEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSV 217 (329)
Q Consensus 161 ~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~ 217 (329)
..+|-.|.-++..+++.|..+..-..+.+....+. +.+.+..-=|.+|...+|...
T Consensus 20 td~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kk-Lg~~I~karPYyea~~~a~~a 75 (239)
T PF05276_consen 20 TDEINRLENELDEARATFRRLLSESTKKLNELAKK-LGSCIEKARPYYEARRKAKEA 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhchHHHHHHHHHHH
Confidence 33444444455555555555554444444443333 225667777888877777554
No 149
>PRK04406 hypothetical protein; Provisional
Probab=30.74 E-value=2.7e+02 Score=21.99 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
.++|...++=.+..++.+.+.+.+.+..+.++.+.+..++.|+.
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666666666666666653
No 150
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.09 E-value=85 Score=28.18 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 158 MAKNEEMKQMQDKVLRSFAEMENVKDRTIR 187 (329)
Q Consensus 158 ~~~~~El~elkdk~lR~~AEfEN~RKRt~r 187 (329)
+..++|++++++++..+.+|++.+|++.+.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666666543
No 151
>PRK13410 molecular chaperone DnaK; Provisional
Probab=30.07 E-value=6e+02 Score=27.69 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=11.1
Q ss_pred hcCCHHHHHHHHHHHH
Q 020200 139 IELSRDDLVKLLKERE 154 (329)
Q Consensus 139 ~~~s~~eL~kl~~e~e 154 (329)
..++.+++.+.+++.+
T Consensus 500 ~~ls~~ei~~~~~~~~ 515 (668)
T PRK13410 500 STLSEQEVNRMIQEAE 515 (668)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 4588888887766544
No 152
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.81 E-value=2.7e+02 Score=27.11 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 159 AKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 159 ~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
.+++.+.++++++.-++++-+.++++..
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~ele 159 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELE 159 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666665553
No 153
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=29.50 E-value=3.7e+02 Score=23.22 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 141 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 185 (329)
Q Consensus 141 ~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt 185 (329)
-..+.|.+.++++.+.+..+.++++.++ .|+..+.+++++..
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~---~r~~~e~~~~~~~~ 59 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYR---KRLEKEKEEAKKYA 59 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3455666666666666665555555544 45555555555443
No 154
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=29.33 E-value=2.5e+02 Score=23.11 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 151 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 188 (329)
Q Consensus 151 ~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE 188 (329)
.....+++.+.+|.+.++-+-.-+.++..||+-|-+-|
T Consensus 26 ~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkne 63 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNE 63 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444566777788888888888889999998776544
No 155
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=29.18 E-value=2.9e+02 Score=29.03 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAE 177 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AE 177 (329)
-+.|++.+.++|.+|..+++|...+.++..|..|.
T Consensus 43 ~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~ 77 (459)
T KOG0288|consen 43 SRAIKAKLQEKELELNRLQEENTQLNEERVREEAT 77 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888888888888888877775554
No 156
>PRK14164 heat shock protein GrpE; Provisional
Probab=29.08 E-value=5e+02 Score=24.65 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 189 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~ 189 (329)
...|.+.++++.+.+..+. +++.+--.|+..|.++.++......
T Consensus 79 ~~~le~el~el~d~llR~~---AE~eN~RkR~~rE~e~~~~~a~~~~ 122 (218)
T PRK14164 79 ASTVEAQLAERTEDLQRVT---AEYANYRRRTERERQAIIETAKAGV 122 (218)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444 4455555667777777776665443
No 157
>PRK14153 heat shock protein GrpE; Provisional
Probab=28.90 E-value=4.7e+02 Score=24.36 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 189 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~ 189 (329)
+++.+.++++...+..+. +++.+--.|+..|.+++++......
T Consensus 43 ~~l~~e~~elkd~~lR~~---AEfeN~rKR~~kE~e~~~~~a~~~~ 85 (194)
T PRK14153 43 EKCREEIESLKEQLFRLA---AEFDNFRKRTAREMEENRKFVLEQV 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444444 4444444666666666666655443
No 158
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.76 E-value=1.4e+02 Score=26.88 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020200 157 LMAKNEEMKQMQDKVLRSFA 176 (329)
Q Consensus 157 l~~~~~El~elkdk~lR~~A 176 (329)
|+..+.+++.++.+...+..
T Consensus 170 l~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 170 LEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333334444443333333
No 159
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=28.44 E-value=3.9e+02 Score=28.87 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 158 MAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 192 (329)
Q Consensus 158 ~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~a 192 (329)
+.++++++.++.+|..+....-..|++..+..+..
T Consensus 345 ~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~ 379 (557)
T COG0497 345 EALEKEVKKLKAELLEAAEALSAIRKKAAKELEKE 379 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555554444433
No 160
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.09 E-value=1.3e+02 Score=31.86 Aligned_cols=15 Identities=0% Similarity=0.120 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 020200 154 EELLMAKNEEMKQMQ 168 (329)
Q Consensus 154 ee~l~~~~~El~elk 168 (329)
+...++++++++.++
T Consensus 75 Q~kasELEKqLaaLr 89 (475)
T PRK13729 75 QVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 161
>PRK02119 hypothetical protein; Provisional
Probab=27.72 E-value=3e+02 Score=21.55 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
..+|...++=.+..++.+.+.+.+....+.++.+.+..++.|+.
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666766666666666667777777766663
No 162
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.48 E-value=3e+02 Score=21.46 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 187 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~r 187 (329)
..+|...++=.+..++.+.+.+.+.+..+.++.+.+..++.|+..
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666677777777777777777777777777777777776643
No 163
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.39 E-value=4.2e+02 Score=23.09 Aligned_cols=45 Identities=7% Similarity=0.063 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 148 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 192 (329)
Q Consensus 148 kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~a 192 (329)
+.++.+++.+...+..++...+.+..+.+...+..+...++.+++
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445566666666666666666666666666666666666665554
No 164
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=27.19 E-value=5.1e+02 Score=24.08 Aligned_cols=56 Identities=9% Similarity=0.089 Sum_probs=34.2
Q ss_pred HHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 020200 197 IQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP 266 (329)
Q Consensus 197 ~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~p 266 (329)
.++.+..+..-+++|+..+..+... ..-..++.|+..--+.|..+.+...|..|+-
T Consensus 79 ~E~ql~q~~~ql~nLEq~~~~iE~a--------------~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~ 134 (191)
T PTZ00446 79 YEQEIENILNNRLTLEDNMINLENM--------------HLHKIAVNALSYAANTHKKLNNEINTQKVEK 134 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4566677777777877776544220 0113456666666677777777777766653
No 165
>PHA02109 hypothetical protein
Probab=26.89 E-value=1.9e+02 Score=27.15 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=29.8
Q ss_pred cCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDL------VKLLKEREELLMAKNEEMKQMQDKVLRSFAEM 178 (329)
Q Consensus 140 ~~s~~eL------~kl~~e~ee~l~~~~~El~elkdk~lR~~AEf 178 (329)
..+.+.| .+++.+++-.|+.+..|+..++++++..+|+.
T Consensus 179 ~~t~~~L~~~~~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~V 223 (233)
T PHA02109 179 SHTGENLEGLTDKLKQISELTIKLEALSDEACQVKHKILNLRAEV 223 (233)
T ss_pred ccchhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 56778888888888899999999988777654
No 166
>PRK00736 hypothetical protein; Provisional
Probab=26.69 E-value=3e+02 Score=21.21 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 149 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 190 (329)
Q Consensus 149 l~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e 190 (329)
.+.++|.++.-.+.-+++|.+-+.+-+.+++-+++++..=.+
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666666666655544333
No 167
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=26.47 E-value=3.7e+02 Score=23.65 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 147 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 192 (329)
Q Consensus 147 ~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~a 192 (329)
.|.+..+++-|..++.|..-||+.+...+--|+-=||-+..-+++.
T Consensus 77 eKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL 122 (126)
T PF13118_consen 77 EKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQL 122 (126)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4778999999999999999999999999888877676665444433
No 168
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=26.45 E-value=2.9e+02 Score=21.97 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVL 172 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~l 172 (329)
.+.|...+.+++.++..++-+..++.+.|.
T Consensus 12 ~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~ 41 (79)
T PF06657_consen 12 GEALSEVLKALQDEFGHMKMEHQELQDEYK 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666655555555555555544443
No 169
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.44 E-value=2.5e+02 Score=28.07 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 151 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 187 (329)
Q Consensus 151 ~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~r 187 (329)
.....+|....-..+.|..++.|-.+|+|-.|||++.
T Consensus 122 q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 122 QSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444556677788888888888888754
No 170
>PRK00736 hypothetical protein; Provisional
Probab=26.22 E-value=3.1e+02 Score=21.16 Aligned_cols=44 Identities=11% Similarity=0.204 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
.++|...++-.+..++.+...+......+.++...+..++.|+.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777677777777777777764
No 171
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=26.15 E-value=4e+02 Score=22.82 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 142 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 182 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~R 182 (329)
|.++|.+.-.+++..+..++.+......+..-++|.+...+
T Consensus 31 S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 31 SQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444344444444444443333333333333333333
No 172
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.94 E-value=5.7e+02 Score=27.17 Aligned_cols=69 Identities=19% Similarity=0.130 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 020200 142 SRDDLVKLLKEREELLMAKNEEMKQMQDK----VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 215 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~El~elkdk----~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl 215 (329)
..-++.+.++.+..+-+.+++|.+.|+.+ -.|....+++.+.++.++.++.+.. ...+...+++|.+=+
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~-----~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSE-----RQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 34455556666666666666666666543 2466677777787777777666543 223444455554443
No 173
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=25.91 E-value=5.3e+02 Score=23.78 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDK------------VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 208 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk------------~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVl 208 (329)
..+..+++++-+..+...+.+..++.+. ...+..+.+.+....+.+++..+..+...+-..+..+.
T Consensus 95 ~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lA 172 (205)
T PRK06231 95 KQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELA 172 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555544444444332 22344455555555555555555555555555555443
No 174
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=25.69 E-value=3.2e+02 Score=22.52 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 154 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 187 (329)
Q Consensus 154 ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~r 187 (329)
++.++.++..++.+..+..++...+.+.++.++.
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556666666666666666666665543
No 175
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.66 E-value=2.1e+02 Score=28.12 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=7.4
Q ss_pred HhhHHHHHHHHhhh
Q 020200 203 ALLDVADNLGRASS 216 (329)
Q Consensus 203 dLLpVlDnLERAl~ 216 (329)
.++.-+..+++.+.
T Consensus 255 ~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 255 ELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555666554
No 176
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.59 E-value=4.1e+02 Score=23.32 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 020200 141 LSRDDLVKLLKEREELLMAKNEEMKQMQD--------KVLRSFAEMENVKDRTIREA 189 (329)
Q Consensus 141 ~s~~eL~kl~~e~ee~l~~~~~El~elkd--------k~lR~~AEfEN~RKRt~rE~ 189 (329)
++.++|...+.+++.+++.++..+..++. ...++..+|..+++.-.+-+
T Consensus 109 ~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 109 PTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
No 177
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=25.33 E-value=4.5e+02 Score=22.74 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 161 NEEMKQMQDKVLRSFAEMENVKDRTIR 187 (329)
Q Consensus 161 ~~El~elkdk~lR~~AEfEN~RKRt~r 187 (329)
-+++.+...++.+.+.||+.++.+..+
T Consensus 130 ~~~i~~~~kkr~~~~ldyd~~~~k~~k 156 (229)
T PF03114_consen 130 FKEIKKLIKKREKKRLDYDSARSKLEK 156 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777888899999988876
No 178
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.28 E-value=1.9e+02 Score=24.13 Aligned_cols=33 Identities=3% Similarity=-0.108 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFA 176 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~A 176 (329)
.++.+.+++++.++++++++.+.|+.++.++.-
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344444555555555555555555555555444
No 179
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.10 E-value=3.1e+02 Score=20.87 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 146 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENV 181 (329)
Q Consensus 146 L~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~ 181 (329)
|...+..+...+..++.++...+++..|+-.-++|.
T Consensus 15 L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444555555555555554
No 180
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.93 E-value=4.3e+02 Score=26.72 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeCCCC--CCCCcc
Q 020200 239 KSLLEGVEMTEKQLGEVFKKFGVEKFDPIN--EPFDPH 274 (329)
Q Consensus 239 k~l~eGVemt~kqL~~vL~k~GVe~I~pvG--epFDPn 274 (329)
+.+. |--+++-.+.+-..+.|+..++--| ..|||+
T Consensus 329 ~~~~-~~~~l~~~~i~~a~~~G~~~ydf~Gi~~~~~~~ 365 (406)
T PF02388_consen 329 RKFY-APYLLQWEAIKYAKEKGIKRYDFGGISGDFDGS 365 (406)
T ss_dssp GGCT-HHHHHHHHHHHHHHHTT-SEEEEEE-SSSSTTT
T ss_pred HhcC-cchHHHHHHHHHHHHCCCCEEEeeCCCCCCCCC
Confidence 3444 3334455555667788999988633 457764
No 181
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.76 E-value=5.6e+02 Score=23.64 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 150 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 184 (329)
Q Consensus 150 ~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKR 184 (329)
+..++..+..++..+..++.++..+...++.+|.+
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555433
No 182
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=24.63 E-value=3.3e+02 Score=25.22 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 149 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 149 l~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
.+.++..+|+..+..++.|..++.-++.||++.|+-..
T Consensus 138 el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~ 175 (188)
T PF05335_consen 138 ELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAY 175 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666666666655443
No 183
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=24.54 E-value=4.2e+02 Score=22.20 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVL-RSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLG 212 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~l-R~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLE 212 (329)
..+..+++.+-++.|...+.+..++.+... .+.++.++.+....++.+.....+...+-..--.....|.
T Consensus 52 ~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~ 122 (140)
T PRK07353 52 LAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLE 122 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 184
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=24.52 E-value=6e+02 Score=23.91 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 153 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 190 (329)
Q Consensus 153 ~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e 190 (329)
++.....+..++..|++..-++.++++.+++|+..=..
T Consensus 93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 34444455667777888888888888888888865433
No 185
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.51 E-value=3e+02 Score=20.38 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020200 165 KQMQDKVLRSFAEMENVK 182 (329)
Q Consensus 165 ~elkdk~lR~~AEfEN~R 182 (329)
.+|.+++..+..+-+.++
T Consensus 29 ~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 29 EELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 186
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=24.48 E-value=2.6e+02 Score=20.82 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVL 172 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~l 172 (329)
.+|.++|.+.++-++... ++|+++++.+|.
T Consensus 7 ~ls~~eL~~rl~~LD~~M---E~Eieelr~RY~ 36 (49)
T PF11629_consen 7 FLSYEELQQRLASLDPEM---EQEIEELRQRYQ 36 (49)
T ss_dssp GS-HHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHhCCHHH---HHHHHHHHHHHH
Confidence 467788887777655443 345555554443
No 187
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.47 E-value=4.2e+02 Score=25.99 Aligned_cols=12 Identities=8% Similarity=-0.119 Sum_probs=5.7
Q ss_pred hCCCeeeCCCCC
Q 020200 258 KFGVEKFDPINE 269 (329)
Q Consensus 258 k~GVe~I~pvGe 269 (329)
-+|+.-+...|.
T Consensus 291 ~~gw~~~~~~~~ 302 (325)
T PF08317_consen 291 LTGWKIVSISGS 302 (325)
T ss_pred HHCcEEEEEeCC
Confidence 445555444443
No 188
>PRK02224 chromosome segregation protein; Provisional
Probab=24.43 E-value=9.7e+02 Score=26.34 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=6.5
Q ss_pred CCCCCcccc
Q 020200 268 NEPFDPHRH 276 (329)
Q Consensus 268 GepFDPn~H 276 (329)
|.+|++.-.
T Consensus 458 ~r~~~~~~~ 466 (880)
T PRK02224 458 GQPVEGSPH 466 (880)
T ss_pred CCcCCCcch
Confidence 888887654
No 189
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=23.88 E-value=6.3e+02 Score=24.00 Aligned_cols=34 Identities=3% Similarity=0.131 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 020200 178 MENVKDRTIREAENSKKFAIQNFAKALLDVADNL 211 (329)
Q Consensus 178 fEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnL 211 (329)
.+++....+.|.+..+..+...+-.+--..++.|
T Consensus 88 ~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L 121 (250)
T PRK14474 88 RQHLLNEAREDVATARDEWLEQLEREKQEFFKAL 121 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 190
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=23.72 E-value=5.4e+02 Score=23.13 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 020200 146 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGR 213 (329)
Q Consensus 146 L~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLER 213 (329)
+.+-+++++..+...-.+.++.+.+...+.++++........|...+...+.+..-...-.+++..+.
T Consensus 56 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~ 123 (181)
T PRK13454 56 IGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADA 123 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 191
>PRK14159 heat shock protein GrpE; Provisional
Probab=23.70 E-value=5.7e+02 Score=23.40 Aligned_cols=51 Identities=14% Similarity=0.008 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 141 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 191 (329)
Q Consensus 141 ~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ 191 (329)
+...+|.++.+++.+.......-.+++.+--.|+..|.+.+++......-.
T Consensus 27 ~~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~ 77 (176)
T PRK14159 27 IEDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAK 77 (176)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333333333333444555555677777777777776655433
No 192
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.35 E-value=1.2e+03 Score=27.19 Aligned_cols=72 Identities=18% Similarity=0.339 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNE--------------------EMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAK 202 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~--------------------El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~k 202 (329)
..+|..++.++.++|+.++- ++.+++.++.-.+|+++.--+|...|.+++. .+.+....
T Consensus 226 e~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaq-e~ke~~k~ 304 (1243)
T KOG0971|consen 226 EEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQ-EAKERYKE 304 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34466667777666655432 3445556666677777666666666655554 35677888
Q ss_pred HhhHHHHHHHHhh
Q 020200 203 ALLDVADNLGRAS 215 (329)
Q Consensus 203 dLLpVlDnLERAl 215 (329)
.|-+..|++|+|.
T Consensus 305 emad~ad~iEmaT 317 (1243)
T KOG0971|consen 305 EMADTADAIEMAT 317 (1243)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999885
No 193
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.20 E-value=3.5e+02 Score=24.75 Aligned_cols=44 Identities=9% Similarity=0.085 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 145 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 188 (329)
Q Consensus 145 eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE 188 (329)
.|...++++...++.+++++..+..++.-..-||+-+-..+.|-
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666666555555555555555554443
No 194
>PRK14158 heat shock protein GrpE; Provisional
Probab=23.15 E-value=6.1e+02 Score=23.58 Aligned_cols=26 Identities=12% Similarity=0.010 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 164 MKQMQDKVLRSFAEMENVKDRTIREA 189 (329)
Q Consensus 164 l~elkdk~lR~~AEfEN~RKRt~rE~ 189 (329)
.+++.+--.|+..|.+++++......
T Consensus 67 ~AefeN~RkR~~kE~e~~~~~a~~~~ 92 (194)
T PRK14158 67 RADLENYRKRVQKEKEELLKYGNESL 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555677777777776655543
No 195
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=23.15 E-value=1.6e+02 Score=29.51 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 020200 141 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLR-------SFAEMENVKDRT 185 (329)
Q Consensus 141 ~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR-------~~AEfEN~RKRt 185 (329)
...++|...+..-.+--..+..|+.+++++|.- ++.+..++|+|+
T Consensus 255 ~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 255 AENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKRT 306 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
No 196
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.01 E-value=4.5e+02 Score=28.50 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=0.0
Q ss_pred ccCCCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 020200 128 DRTKESDSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLD 206 (329)
Q Consensus 128 ~~~~~~~~~~e~~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLp 206 (329)
......+...+.....++|.+.+.++...+..+..+++.++..+..+..+.+..+....+- ...+.+.+=+.+|||
T Consensus 315 ~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l---e~~~~l~~k~~~lL~ 390 (594)
T PF05667_consen 315 EKETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL---EEELKLKKKTVELLP 390 (594)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
No 197
>PRK00295 hypothetical protein; Provisional
Probab=22.57 E-value=3.6e+02 Score=20.74 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 187 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~r 187 (329)
..+|...++-.+..++.+.+.+......+.++...+..++.|+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777777777777654
No 198
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=22.52 E-value=6e+02 Score=23.19 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 020200 154 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 208 (329)
Q Consensus 154 ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVl 208 (329)
++.+.+.+++.+.+ +.++..+.+++++|+.......++..+-..-..++.++
T Consensus 36 e~Ii~eA~~eAe~i---~~kAe~ea~~~~~~~~saa~l~~r~~ll~~k~~i~~~~ 87 (198)
T PRK01558 36 EEIIAKAEEEAKEL---KAKAEKEANDYKRHALEASRQAGRDLLISFEKSIKSLF 87 (198)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433 44577777799999888888887777766666666544
No 199
>PRK14155 heat shock protein GrpE; Provisional
Probab=22.41 E-value=6.5e+02 Score=23.62 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 145 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 189 (329)
Q Consensus 145 eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~ 189 (329)
+|.+.++++++.+..+ .+++.+--.|+..|.+++++.....+
T Consensus 24 ~le~e~~elkd~~lR~---~AefeN~RKR~~kE~e~~~~~a~~~~ 65 (208)
T PRK14155 24 ALKAEVAALKDQALRY---AAEAENTKRRAEREMNDARAYAIQKF 65 (208)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333 34455555677777777777665554
No 200
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=22.40 E-value=7.8e+02 Score=24.50 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH--HHHHHHHHHHHHHhhHHHHHHHH
Q 020200 150 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI--------------REAE--NSKKFAIQNFAKALLDVADNLGR 213 (329)
Q Consensus 150 ~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~--------------rE~e--~ak~~A~e~f~kdLLpVlDnLER 213 (329)
.++++.+|..++.++.++..+..|+.-|.+-.|.+.+ .+.. .+.+....+.++.|=..-|+|+|
T Consensus 47 EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 47 EAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3445555555555556665555555555554444432 2211 12233445667777777888888
Q ss_pred hhh
Q 020200 214 ASS 216 (329)
Q Consensus 214 Al~ 216 (329)
|-.
T Consensus 127 akR 129 (333)
T KOG1853|consen 127 AKR 129 (333)
T ss_pred hhh
Confidence 754
No 201
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=22.36 E-value=5.6e+02 Score=22.82 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQMQDK------------VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDV 207 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~elkdk------------~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpV 207 (329)
.+..+++++-++.+...+.+..++.+. ...+.++.+.+....+++++..+..+...+-..+..+
T Consensus 75 ~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~l 150 (184)
T PRK13455 75 EEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSV 150 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555544444444333 2223333344444444455555555555544444443
No 202
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=22.27 E-value=2.4e+02 Score=22.04 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=14.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDLVKLLKEREELLMAKNEEM 164 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~~~~~El 164 (329)
-+|.++|...++-++.+++.+++|+
T Consensus 24 llsV~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 24 LLSVAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666555555555444
No 203
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.04 E-value=4e+02 Score=21.70 Aligned_cols=43 Identities=9% Similarity=0.277 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 141 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 141 ~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
.+.++..+.+.. .++.++++++++.+.+..+.+.+..++..++
T Consensus 83 ~~~~eA~~~l~~---r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 83 KSLEEAIEFLKK---RLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred ecHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554444333 3334455566666666666666666665554
No 204
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.95 E-value=5.3e+02 Score=22.43 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 160 KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 195 (329)
Q Consensus 160 ~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~ 195 (329)
++.++.+++..+..+..+++-+..++..|+......
T Consensus 150 l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~ 185 (218)
T cd07596 150 LEEELEEAESALEEARKRYEEISERLKEELKRFHEE 185 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555566666666666666666555443
No 205
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.71 E-value=3.8e+02 Score=22.45 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 160 KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 193 (329)
Q Consensus 160 ~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak 193 (329)
+..++..+++++..+..+.+.+++.+.+..++.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k 111 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIK 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777766666655554
No 206
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=21.47 E-value=5.5e+02 Score=22.41 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 020200 148 KLLKEREELLMAKNEEMKQMQDKVLRSFAEME--------NVKDRTIREAENSK 193 (329)
Q Consensus 148 kl~~e~ee~l~~~~~El~elkdk~lR~~AEfE--------N~RKRt~rE~e~ak 193 (329)
++.+++.+.+..++.|+..|.-+..|+.++.. +++.+...|+....
T Consensus 20 ~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~ 73 (131)
T PF11068_consen 20 ELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERL 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Confidence 45566677777788888888888888887754 56666666655444
No 207
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=21.39 E-value=5.8e+02 Score=22.62 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 020200 164 MKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLG 212 (329)
Q Consensus 164 l~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLE 212 (329)
.++++.++..+..+.+.++....++.+..+...+...-.+.=.+.....
T Consensus 76 ~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~ 124 (167)
T PRK08475 76 KEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFE 124 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555544444444444433333333
No 208
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.29 E-value=5.1e+02 Score=21.92 Aligned_cols=28 Identities=0% Similarity=0.198 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 160 KNEEMKQMQDKVLRSFAEMENVKDRTIR 187 (329)
Q Consensus 160 ~~~El~elkdk~lR~~AEfEN~RKRt~r 187 (329)
+.+.++.+...+......++.++..+.+
T Consensus 106 l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 106 LEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554444
No 209
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=21.13 E-value=6.7e+02 Score=24.29 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 020200 161 NEEMKQMQDKVLRSFAEMENVKDRTIRE----AENSKKFAIQNFAKA 203 (329)
Q Consensus 161 ~~El~elkdk~lR~~AEfEN~RKRt~rE----~e~ak~~A~e~f~kd 203 (329)
-++.+.++++..|..+|+.+|..+.-.. +.++...|.+-+-.+
T Consensus 97 ~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee 143 (236)
T KOG3003|consen 97 LAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEE 143 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 3455677788888889988888777554 445555555544443
No 210
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.13 E-value=5.4e+02 Score=25.29 Aligned_cols=11 Identities=9% Similarity=0.184 Sum_probs=4.2
Q ss_pred HhhHHHHHHHH
Q 020200 203 ALLDVADNLGR 213 (329)
Q Consensus 203 dLLpVlDnLER 213 (329)
|||.=++.+..
T Consensus 131 D~IsRvtAi~~ 141 (265)
T COG3883 131 DLISRVTAISV 141 (265)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 211
>PF14388 DUF4419: Domain of unknown function (DUF4419)
Probab=21.11 E-value=1.9e+02 Score=28.50 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHhhh
Q 020200 173 RSFAEMENVKDRTIREAENSKKFA--IQNFAKALLDVADNLGRASS 216 (329)
Q Consensus 173 R~~AEfEN~RKRt~rE~e~ak~~A--~e~f~kdLLpVlDnLERAl~ 216 (329)
=...|+++++.|+++=.+ |+ ...++..|.||+|.|-.+.+
T Consensus 142 Gt~~DW~~L~~r~~~L~e----fg~~~~~w~~~L~pIl~~fi~s~~ 183 (299)
T PF14388_consen 142 GTREDWEKLLERLDRLKE----FGEEMEWWASLLRPILDRFIASFD 183 (299)
T ss_pred ecHHHHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHHHHHHhc
Confidence 356888888888877555 54 88899999999999988865
No 212
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=21.11 E-value=6.6e+02 Score=23.17 Aligned_cols=52 Identities=6% Similarity=0.156 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 020200 162 EEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 214 (329)
Q Consensus 162 ~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERA 214 (329)
++++.++.++.++.+++...+.....-+.....+ ...+..++..++|.|...
T Consensus 150 ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~-~~~~~~~~~~~~~~~Q~l 201 (236)
T cd07651 150 KELEKNNAKLNKAQSSINSSRRDYQNAVKALREL-NEIWNREWKAALDDFQDL 201 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3455666666677777766666666666655544 556777777777766533
No 213
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=21.09 E-value=1.7e+02 Score=26.34 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020200 175 FAEMENVKDRTIREAENSKKF 195 (329)
Q Consensus 175 ~AEfEN~RKRt~rE~e~ak~~ 195 (329)
.++|++|+.++.+|+..+.+|
T Consensus 72 K~eFe~Y~~~a~~Em~KLi~y 92 (152)
T PF11500_consen 72 KEEFESYHEKAEKEMEKLIKY 92 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355688888888887777554
No 214
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=21.08 E-value=3.9e+02 Score=27.16 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020200 163 EMKQMQDKVLRSFAEMENVKDRT 185 (329)
Q Consensus 163 El~elkdk~lR~~AEfEN~RKRt 185 (329)
++..++.+..++..+...+++..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~ 52 (398)
T PTZ00454 30 ELEFLDIQEEYIKEEQKNLKREL 52 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 215
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=21.07 E-value=6e+02 Score=22.67 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 179 ENVKDRTIREAENSKKFAIQNFAKA 203 (329)
Q Consensus 179 EN~RKRt~rE~e~ak~~A~e~f~kd 203 (329)
+......+++.+.....|...+-..
T Consensus 108 ~~il~~A~~ea~~~~~~a~~~ie~E 132 (184)
T CHL00019 108 ENLINQAKEDLERLENYKNETIRFE 132 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443333333
No 216
>PLN03184 chloroplast Hsp70; Provisional
Probab=20.98 E-value=1e+03 Score=25.92 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=34.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 020200 139 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASS 216 (329)
Q Consensus 139 ~~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~ 216 (329)
.+++.+++.+.+.+.++. +..+++..+.. .++-++|.|--++++-.++...+....-...|...++.++..+.
T Consensus 537 ~~ls~eei~~~~~~~~~~-~~~D~~~~~~~----eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~ 609 (673)
T PLN03184 537 STLPKDEVERMVQEAEKF-AKEDKEKRDAV----DTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIA 609 (673)
T ss_pred ccccHHHHHHHHHHHHHh-hhhhHHHHHHH----HHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHh
Confidence 357888887766554322 11111111111 12223333333333333333444445555566666777777664
No 217
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.85 E-value=4.2e+02 Score=20.80 Aligned_cols=42 Identities=17% Similarity=0.050 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 146 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 187 (329)
Q Consensus 146 L~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~r 187 (329)
|+..+++++++-..+..+...|+....+++.|..+...|+..
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555667777777777777776666654
No 218
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.84 E-value=4.4e+02 Score=28.31 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=6.3
Q ss_pred CEEeeeeEEEeec
Q 020200 304 ERVIRPAEVGVTQ 316 (329)
Q Consensus 304 dRVLRPA~VvVak 316 (329)
+=+||-|.|.+.-
T Consensus 339 ~~lIk~~~vs~~~ 351 (555)
T TIGR03545 339 DFLIKKADVSGKM 351 (555)
T ss_pred cEEEEeeeEeeee
Confidence 3455555554443
No 219
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=20.76 E-value=8.6e+02 Score=24.35 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhh
Q 020200 140 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVV 218 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~ 218 (329)
+++.-.|. .|.+++..++.++++-..-+=++--+-|-++.-|+..+.++.+. .++..=.-.|++++|+|+++.+-+
T Consensus 11 GL~~~aLq-KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~--s~LkREnq~l~e~c~~lek~rqKl 86 (307)
T PF10481_consen 11 GLPTRALQ-KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEY--SALKRENQSLMESCENLEKTRQKL 86 (307)
T ss_pred cCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhhhHHHHHHHHHHHHHHh
Confidence 45555443 46777777777777766655556667777777777766665543 345555667999999999997644
No 220
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.68 E-value=4.2e+02 Score=20.75 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 153 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 185 (329)
Q Consensus 153 ~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt 185 (329)
+++.++.++.+++.++..+..+...+.+++..+
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666666665544
No 221
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.33 E-value=3.3e+02 Score=24.22 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEe
Q 020200 240 SLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVL 296 (329)
Q Consensus 240 ~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVl 296 (329)
.+.+-++.+...+...+.+.||.++++-++ -=-.+-=++... ++..+|.|+.-+
T Consensus 64 ~~~~~~~~l~~~~~~~~~kvgvvRYnAF~d-mGg~LSFslAlL--D~~~nGvVltsI 117 (151)
T PF14584_consen 64 ELEKRIEELEEKLRNCVQKVGVVRYNAFED-MGGDLSFSLALL--DDNNNGVVLTSI 117 (151)
T ss_pred HHHHHHHHHHHHHHhccceEEEEEccCccc-ccccceeeeEEE--eCCCCEEEEEee
Confidence 345566777889999999999999998322 001222233333 344577776654
No 222
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=20.15 E-value=4.8e+02 Score=21.23 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 020200 166 QMQDKVLRSFAEMENV 181 (329)
Q Consensus 166 elkdk~lR~~AEfEN~ 181 (329)
++..++..+..+...+
T Consensus 55 e~~~~l~~a~~ea~~i 70 (132)
T PF00430_consen 55 EYEEKLAEAREEAQEI 70 (132)
T ss_dssp HHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 223
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=20.13 E-value=6.8e+02 Score=22.92 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 150 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 188 (329)
Q Consensus 150 ~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE 188 (329)
..-+.+.|+......+.|.+.+.++..+|+-++.-+...
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~k 121 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQK 121 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333556666667777778888888888888876655433
No 224
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=20.12 E-value=4e+02 Score=30.32 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 020200 155 ELLMAKNEEMKQMQDKVLRSFAE------------------------MENVKDRTIREAENSKKFAIQNFAKALLDVADN 210 (329)
Q Consensus 155 e~l~~~~~El~elkdk~lR~~AE------------------------fEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDn 210 (329)
++|+++-+++.+.-+.|+|.+|+ ++++..|++.-.+.-...+.+.++..|=.+++|
T Consensus 523 eEI~~Lm~eLR~Am~~ym~~LAeq~~~~~~~~~~~~~~~~~~l~~~dLq~Mmd~ieela~~G~~~~A~qlL~qlq~mmen 602 (851)
T TIGR02302 523 EEIKQLTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLARSGDRDQAKQLLSQLQQMMNN 602 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccccCCccccccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44555555555556666666553 566667777777777777788888888888888
Q ss_pred HHHh
Q 020200 211 LGRA 214 (329)
Q Consensus 211 LERA 214 (329)
|..+
T Consensus 603 lq~~ 606 (851)
T TIGR02302 603 LQMG 606 (851)
T ss_pred Hhcc
Confidence 8854
Done!