Query 020200
Match_columns 329
No_of_seqs 230 out of 1186
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 13:18:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ani_A Protein GRPE; chaperone 100.0 5.9E-47 2E-51 346.5 18.5 152 151-316 62-213 (213)
2 1dkg_A Nucleotide exchange fac 100.0 1.3E-46 4.5E-51 340.5 17.8 156 147-318 41-196 (197)
3 3a6m_A Protein GRPE, HSP-70 co 100.0 5.3E-47 1.8E-51 338.3 8.9 146 154-318 25-170 (177)
4 3swy_A Cyclic nucleotide-gated 86.8 3.7 0.00013 28.9 7.6 41 153-193 3-43 (46)
5 2v71_A Nuclear distribution pr 85.2 20 0.00069 32.0 14.8 71 148-218 42-128 (189)
6 3swf_A CGMP-gated cation chann 83.7 8.3 0.00029 29.7 8.9 43 153-195 5-47 (74)
7 3mq7_A Bone marrow stromal ant 75.1 11 0.00037 31.5 7.5 42 145-186 61-102 (121)
8 2l5g_B Putative uncharacterize 71.9 8.4 0.00029 26.7 5.2 36 140-175 1-36 (42)
9 3nmd_A CGMP dependent protein 71.0 16 0.00055 28.0 7.1 43 142-184 20-62 (72)
10 2v4h_A NF-kappa-B essential mo 71.0 43 0.0015 27.6 10.2 36 142-177 25-60 (110)
11 2v66_B Nuclear distribution pr 70.2 44 0.0015 27.4 14.6 71 148-218 3-75 (111)
12 3jsv_C NF-kappa-B essential mo 68.6 26 0.00089 28.1 8.2 37 142-178 3-39 (94)
13 3tso_C RAB11 family-interactin 67.0 14 0.00046 28.6 6.0 33 139-171 12-44 (75)
14 3etw_A Adhesin A; antiparallel 66.4 13 0.00046 30.9 6.3 38 167-216 69-106 (119)
15 3he5_A Synzip1; heterodimeric 65.8 28 0.00095 24.1 6.8 41 146-186 8-48 (49)
16 3ghg_A Fibrinogen alpha chain; 59.4 79 0.0027 32.5 11.6 41 145-185 50-90 (562)
17 3plt_A Sphingolipid long chain 55.0 1.3E+02 0.0044 27.6 11.7 63 158-220 134-196 (234)
18 4emc_A Monopolin complex subun 53.3 89 0.0031 27.9 9.7 64 139-208 18-81 (190)
19 3nmd_A CGMP dependent protein 53.0 22 0.00076 27.2 5.0 33 150-182 35-67 (72)
20 3efg_A Protein SLYX homolog; x 50.6 47 0.0016 25.3 6.6 54 140-193 6-59 (78)
21 3trt_A Vimentin; cytoskeleton, 49.0 55 0.0019 24.1 6.7 16 164-179 58-73 (77)
22 2yy0_A C-MYC-binding protein; 48.5 28 0.00095 24.8 4.6 28 143-170 21-48 (53)
23 3hnw_A Uncharacterized protein 48.2 91 0.0031 26.1 8.6 41 148-188 75-115 (138)
24 3hnw_A Uncharacterized protein 45.8 1.1E+02 0.0038 25.6 8.8 41 145-185 79-119 (138)
25 2avr_X Adhesion A; antiparalle 45.7 46 0.0016 27.7 6.2 36 167-214 69-104 (119)
26 1d7m_A Cortexillin I; coiled-c 44.5 77 0.0026 25.4 7.0 47 140-186 17-63 (101)
27 2gzd_C RAB11 family-interactin 44.4 8.6 0.0003 31.5 1.6 33 139-171 44-76 (107)
28 1uix_A RHO-associated kinase; 43.4 1.1E+02 0.0036 23.3 10.1 52 150-202 13-64 (71)
29 1gmj_A ATPase inhibitor; coile 42.0 91 0.0031 24.5 7.0 21 164-184 53-73 (84)
30 1gd2_E Transcription factor PA 41.1 42 0.0014 25.3 4.9 27 156-182 30-56 (70)
31 3mq7_A Bone marrow stromal ant 40.7 76 0.0026 26.4 6.7 36 149-184 72-107 (121)
32 3na7_A HP0958; flagellar bioge 39.8 1.9E+02 0.0065 25.9 10.0 21 241-265 177-197 (256)
33 2yy0_A C-MYC-binding protein; 39.8 53 0.0018 23.4 5.0 30 157-186 21-50 (53)
34 3htk_A Structural maintenance 39.2 96 0.0033 21.6 7.9 47 145-191 9-55 (60)
35 1zxa_A CGMP-dependent protein 38.3 46 0.0016 25.0 4.7 28 144-171 14-41 (67)
36 3t98_B Nucleoporin NUP58/NUP45 37.1 1E+02 0.0034 24.4 6.7 50 139-188 42-91 (93)
37 3gp4_A Transcriptional regulat 36.2 1.8E+02 0.0061 23.9 9.0 13 139-151 58-70 (142)
38 4etp_A Kinesin-like protein KA 36.0 1.2E+02 0.0042 29.3 8.6 16 249-264 130-145 (403)
39 1j1d_B Troponin T, TNT; THIN f 35.4 1.7E+02 0.0057 23.7 7.9 46 140-185 41-86 (106)
40 1s1c_X RHO-associated, coiled- 35.0 1.5E+02 0.005 22.5 9.8 56 146-202 4-64 (71)
41 1u2m_A Histone-like protein HL 33.4 34 0.0012 27.8 3.6 51 164-214 62-112 (143)
42 2eqb_B RAB guanine nucleotide 33.2 1.9E+02 0.0064 23.2 8.4 50 143-192 7-59 (97)
43 3mq9_A Bone marrow stromal ant 33.1 69 0.0024 30.7 6.3 25 144-168 400-424 (471)
44 2zvf_A Alanyl-tRNA synthetase; 32.9 53 0.0018 27.3 4.8 17 167-183 30-46 (171)
45 1t3j_A Mitofusin 1; coiled coi 32.7 92 0.0031 24.9 5.9 13 169-181 78-90 (96)
46 3viq_B Mating-type switching p 32.6 1.8E+02 0.0061 22.8 8.0 29 142-170 2-30 (85)
47 2xv5_A Lamin-A/C; structural p 32.2 1.6E+02 0.0055 22.2 8.4 18 176-193 36-53 (74)
48 1t6f_A Geminin; coiled-coil, c 30.9 68 0.0023 21.5 4.0 25 144-168 10-34 (37)
49 2jee_A YIIU; FTSZ, septum, coi 30.7 1.9E+02 0.0064 22.4 10.1 39 145-183 10-48 (81)
50 2aze_A Transcription factor DP 30.2 1.8E+02 0.0061 25.1 7.7 44 142-186 3-46 (155)
51 2wt7_B Transcription factor MA 29.8 1.7E+02 0.0058 23.1 6.9 31 155-185 55-85 (90)
52 1gk6_A Vimentin; intermediate 29.7 1.5E+02 0.0052 21.1 6.2 18 176-193 31-48 (59)
53 2zqm_A Prefoldin beta subunit 29.5 1.5E+02 0.005 22.9 6.6 43 142-187 67-109 (117)
54 4etp_A Kinesin-like protein KA 29.3 1.2E+02 0.0039 29.5 7.1 11 181-191 46-56 (403)
55 1ytz_T Troponin T; muscle, THI 28.6 1.7E+02 0.0059 23.6 7.0 45 140-184 41-85 (107)
56 3cvf_A Homer-3, homer protein 28.3 1.7E+02 0.0057 22.6 6.5 29 154-182 12-40 (79)
57 3kin_B Kinesin heavy chain; mo 27.9 1E+02 0.0034 25.0 5.5 31 141-171 82-112 (117)
58 3mud_A DNA repair protein XRCC 27.3 3E+02 0.01 24.2 8.7 45 142-186 121-166 (175)
59 3na7_A HP0958; flagellar bioge 27.1 3.4E+02 0.011 24.2 16.1 46 143-188 34-79 (256)
60 3u06_A Protein claret segregat 26.3 2E+02 0.0067 28.1 8.2 15 250-264 129-143 (412)
61 1l8d_A DNA double-strand break 26.0 2.1E+02 0.0073 22.0 7.0 44 143-186 59-102 (112)
62 3m9b_A Proteasome-associated A 23.6 1E+02 0.0035 28.6 5.3 36 157-192 56-91 (251)
63 2dfs_A Myosin-5A; myosin-V, in 23.4 6.4E+02 0.022 27.6 12.3 32 154-185 983-1014(1080)
64 3ljm_A Coil Ser L9C; de novo d 22.9 1.5E+02 0.0052 18.7 4.3 24 144-167 4-27 (31)
65 1fxk_A Prefoldin; archaeal pro 22.9 2.2E+02 0.0075 21.6 6.5 42 142-186 62-103 (107)
66 4b4t_M 26S protease regulatory 22.5 83 0.0028 30.9 4.7 38 156-193 33-70 (434)
67 3ilw_A DNA gyrase subunit A; D 22.1 3.1E+02 0.011 27.5 8.8 66 179-256 341-406 (470)
68 3oja_A Leucine-rich immune mol 22.0 5.2E+02 0.018 24.6 10.5 16 173-188 432-447 (487)
69 1p9i_A Cortexillin I/GCN4 hybr 21.8 1.3E+02 0.0046 19.0 3.9 23 144-166 2-24 (31)
70 4dzn_A Coiled-coil peptide CC- 21.7 1.7E+02 0.0057 18.8 5.0 23 146-168 7-29 (33)
71 1deb_A APC protein, adenomatou 21.6 2.3E+02 0.0078 20.3 7.9 45 141-185 3-47 (54)
72 2jee_A YIIU; FTSZ, septum, coi 21.5 2.9E+02 0.0098 21.4 7.7 20 167-186 53-72 (81)
73 1g6u_A Domain swapped dimer; d 21.4 2.1E+02 0.007 19.7 5.1 30 139-172 15-44 (48)
74 3f6n_A Virion-associated prote 21.0 2.7E+02 0.0091 23.3 6.7 44 167-210 14-59 (129)
75 2wuj_A Septum site-determining 20.9 1.1E+02 0.0038 21.7 3.9 36 140-175 19-54 (57)
76 3oja_B Anopheles plasmodium-re 20.8 5.8E+02 0.02 24.7 13.2 22 239-260 561-582 (597)
77 3he4_B Synzip5; heterodimeric 20.7 2.1E+02 0.0071 19.5 5.7 33 143-179 5-37 (46)
78 1l8d_A DNA double-strand break 20.5 2.2E+02 0.0077 21.9 6.1 29 156-184 11-39 (112)
79 3mov_A Lamin-B1; LMNB1, B-type 20.5 3.1E+02 0.011 21.4 8.9 8 174-181 49-56 (95)
80 3w03_C DNA repair protein XRCC 20.4 2.1E+02 0.0072 25.2 6.5 41 147-187 144-184 (184)
81 1x8y_A Lamin A/C; structural p 20.3 2.9E+02 0.0099 21.0 8.9 39 155-193 35-76 (86)
82 3u06_A Protein claret segregat 20.2 2.6E+02 0.009 27.2 7.7 18 165-182 20-37 (412)
83 1gd2_E Transcription factor PA 20.1 2.2E+02 0.0075 21.3 5.6 36 145-180 33-68 (70)
No 1
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=100.00 E-value=5.9e-47 Score=346.53 Aligned_cols=152 Identities=36% Similarity=0.568 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCC
Q 020200 151 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSND 230 (329)
Q Consensus 151 ~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D 230 (329)
..++..++.+++++++++|+|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~---------- 131 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETD---------- 131 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc----------
Confidence 4455667778899999999999999999999999999999999999999999999999999999986432
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeee
Q 020200 231 TAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPA 310 (329)
Q Consensus 231 ~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA 310 (329)
+..+++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||++|+|+||+|+|||||||
T Consensus 132 ----~~~~~~l~eGvemi~k~l~~~L~k~Gv~~I~~~Ge~FDP~~HeAv~~v~~~~~~~gtVv~V~qkGY~l~dRVLRpA 207 (213)
T 4ani_A 132 ----NEQAKSILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEPNTVVEELQKGYKLKDRVLRPA 207 (213)
T ss_dssp ----CSTHHHHHHHHHHHHHHHHHHHHHTTEECCCCSSSCCCTTTEEEEEEECCSSSCSSSEEEEEECCCEETTSCCSCE
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHceeeeeecCCCCCCCcEEEEEeCCeEECCEEeece
Confidence 1235789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeec
Q 020200 311 EVGVTQ 316 (329)
Q Consensus 311 ~VvVak 316 (329)
||+|++
T Consensus 208 ~V~Va~ 213 (213)
T 4ani_A 208 MVKVSQ 213 (213)
T ss_dssp EEEEEC
T ss_pred EEEeCC
Confidence 999985
No 2
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=100.00 E-value=1.3e-46 Score=340.52 Aligned_cols=156 Identities=36% Similarity=0.545 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCC
Q 020200 147 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKID 226 (329)
Q Consensus 147 ~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~ 226 (329)
...+++++.++++++. +++|+|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+....
T Consensus 41 ~~~~~~l~~~l~e~~~---~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~----- 112 (197)
T 1dkg_A 41 DEKVANLEAQLAEAQT---RERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKA----- 112 (197)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccc-----
Confidence 3344444544544433 47789999999999999999999999999999999999999999999999864210
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEE
Q 020200 227 PSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERV 306 (329)
Q Consensus 227 ~s~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRV 306 (329)
++.+++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||++|+|+||+|+|||
T Consensus 113 --------~~~~~~l~~Gv~~~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRv 184 (197)
T 1dkg_A 113 --------NPDMSAMVEDIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRT 184 (197)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHTTTTEEEECCCSSBCCTTSEEEEEEEECSSSCTTBEEEEEECEEEETTEE
T ss_pred --------cchHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhheeeeecCCCCCcCeEEEEeeCCeeeCCEE
Confidence 123478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEeecCC
Q 020200 307 IRPAEVGVTQAV 318 (329)
Q Consensus 307 LRPA~VvVak~~ 318 (329)
||||||+|++++
T Consensus 185 LRpA~V~V~~~~ 196 (197)
T 1dkg_A 185 IRAAMVTVAKAK 196 (197)
T ss_dssp EECEEEEEEECC
T ss_pred ecceEEEecCCC
Confidence 999999999854
No 3
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=100.00 E-value=5.3e-47 Score=338.29 Aligned_cols=146 Identities=34% Similarity=0.507 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q 020200 154 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAG 233 (329)
Q Consensus 154 ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~ 233 (329)
++.++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 25 ~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~------------- 91 (177)
T 3a6m_A 25 EERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEA------------- 91 (177)
T ss_dssp TTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc-------------
Confidence 3345566778899999999999999999999999999999999999999999999999999986431
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEE
Q 020200 234 AVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVG 313 (329)
Q Consensus 234 ~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~Vv 313 (329)
..++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++ ++|||++|+|+||+|+|||||||||+
T Consensus 92 ---~~~~l~~Gv~m~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~---~~gtVv~v~qkGY~l~dRvLRpA~V~ 165 (177)
T 3a6m_A 92 ---SPESIRQGVRAIRDGFFRILAGLGVEEVPGEGEAFDPRYHEAVGLLPG---EPGKVAKVFQRGFRMGEALVRPARVA 165 (177)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTTCEECCCTTSBCCTTTEEEEEEEES---STTBEEEEEECCEEETTEEEECEEEE
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhhhhcccC---CcCeEEEEeecCeeeCCEEecCeEEE
Confidence 146799999999999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred eecCC
Q 020200 314 VTQAV 318 (329)
Q Consensus 314 Vak~~ 318 (329)
|++++
T Consensus 166 V~~~~ 170 (177)
T 3a6m_A 166 VGEEK 170 (177)
T ss_dssp EEECC
T ss_pred EeCCC
Confidence 99976
No 4
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=86.77 E-value=3.7 Score=28.94 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 153 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 193 (329)
Q Consensus 153 ~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak 193 (329)
+++.+..++.-++-|+.++.|+.|||+....++.+-+....
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778899999999999999999988887666543
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.23 E-value=20 Score=31.97 Aligned_cols=71 Identities=21% Similarity=0.282 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H--HHHHHHHHHHHhhHHHHHH
Q 020200 148 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN--------------S--KKFAIQNFAKALLDVADNL 211 (329)
Q Consensus 148 kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~--------------a--k~~A~e~f~kdLLpVlDnL 211 (329)
.+.++++..|...++++.+++.++.|+.-|.+.+|.+...-..+ . .......-+++|=-.-|+|
T Consensus 42 ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 42 ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 35566666666677777777777777777777776655443322 1 1223344456666677888
Q ss_pred HHhhhhh
Q 020200 212 GRASSVV 218 (329)
Q Consensus 212 ERAl~~~ 218 (329)
+|+..+.
T Consensus 122 Er~~R~~ 128 (189)
T 2v71_A 122 ERAKRAT 128 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 6
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=83.71 E-value=8.3 Score=29.72 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 153 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 195 (329)
Q Consensus 153 ~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~ 195 (329)
+++.+..++.-++-|+.++.|+.|+|+....++.+-+.....+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKF 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777888899999999999999999998877766654
No 7
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.08 E-value=11 Score=31.54 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 145 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 145 eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
.|.+..+...+++++++.||+.|+.++.-+.|+.+-+|+-.+
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 344444444556888888888888888888888888877654
No 8
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=71.92 E-value=8.4 Score=26.70 Aligned_cols=36 Identities=11% Similarity=0.277 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSF 175 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~ 175 (329)
+++.+||.+.+.....+++.-++++.+++.++.-+.
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999888888888888888888887765443
No 9
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.00 E-value=16 Score=27.97 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 142 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 184 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKR 184 (329)
+..+|+.++..+.++|..++..++++..++...-++..+++..
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777776666666666666666665555555555544443
No 10
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=70.99 E-value=43 Score=27.57 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 142 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAE 177 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AE 177 (329)
..++|...+...++.|..+..++++++....+..++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~ 60 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIV 60 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777766667777777777777776665555543
No 11
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=70.24 E-value=44 Score=27.42 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHhhhhh
Q 020200 148 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK--FAIQNFAKALLDVADNLGRASSVV 218 (329)
Q Consensus 148 kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~--~A~e~f~kdLLpVlDnLERAl~~~ 218 (329)
+...++......+.-+++.++.+|.....+--...-.+++|+...+. .-...-+++|=-.-|+|+|+-.+.
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t 75 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 45566777778888899999999999999888888888888776553 345666788888899999997654
No 12
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=68.62 E-value=26 Score=28.09 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 142 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEM 178 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEf 178 (329)
-.++|...+...++.|..++.++++|++...+..++.
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~ 39 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM 39 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666555544433
No 13
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=67.00 E-value=14 Score=28.61 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=27.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 139 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKV 171 (329)
Q Consensus 139 ~~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~ 171 (329)
..+|.+||.+++-.++..+...+.++.+|+|-+
T Consensus 12 ~~ltreELi~l~lk~~~~l~~k~~~v~eLEdYI 44 (75)
T 3tso_C 12 RSLTYEEVLQELVKHKELLRRKDTHIRELEDYI 44 (75)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999988888888877777776654
No 14
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=66.43 E-value=13 Score=30.90 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 020200 167 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASS 216 (329)
Q Consensus 167 lkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~ 216 (329)
+++.|..+.++|.++++-++.++.... .++|+|+++-.
T Consensus 69 yk~~y~~l~k~Y~~~~keLd~~ik~qe------------kiIdnFE~ik~ 106 (119)
T 3etw_A 69 YKSQYQELASKYEDALKKLEAEMEQQK------------AVISDFEKIQA 106 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence 456677777777777777766665444 47899987743
No 15
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=65.80 E-value=28 Score=24.14 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 146 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 146 L~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
|...++-++.+-+.+++..-.-+|-...+..++.|+||.++
T Consensus 8 lenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 33334444444444444444445556677788888888753
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.36 E-value=79 Score=32.46 Aligned_cols=41 Identities=7% Similarity=0.102 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 145 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 185 (329)
Q Consensus 145 eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt 185 (329)
+|+-++.+.+..+...-.+|+...+++.+...+.++|-+-+
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~ 90 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNI 90 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 34444433333333332333333333345555555554333
No 17
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=55.00 E-value=1.3e+02 Score=27.65 Aligned_cols=63 Identities=10% Similarity=0.122 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhh
Q 020200 158 MAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKE 220 (329)
Q Consensus 158 ~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~ 220 (329)
..++.|+....-..+-+-|.+.|++|+.-||.-..+--|...+...+.=+...=.+.+..++.
T Consensus 134 ~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~ila~~gk~Ll~lldd 196 (234)
T 3plt_A 134 PVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFALIAGYGKALLELLDD 196 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344445444444455666889999999999999999999999999988777666666665543
No 18
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=53.26 E-value=89 Score=27.91 Aligned_cols=64 Identities=30% Similarity=0.293 Sum_probs=38.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 020200 139 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 208 (329)
Q Consensus 139 ~~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVl 208 (329)
+++-+..|......+.++++.+..|++.|+.++.-+.++..-+.-+..++.+.+. +..||+..+
T Consensus 18 ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~------i~~DL~e~L 81 (190)
T 4emc_A 18 ADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSE------VIKDLYEYL 81 (190)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh------HHHHHHHHc
Confidence 4555666666666667777777777777777777666666555555554444443 555555544
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.01 E-value=22 Score=27.18 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 150 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 182 (329)
Q Consensus 150 ~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~R 182 (329)
+..+++.++.+++++.+..+.+..++.+++.||
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666667777777666777777777664
No 20
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=50.63 E-value=47 Score=25.35 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 193 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak 193 (329)
.+..+++...+.++|.++.-++.-+++|.+-+.+-+.+++-+++++..=.+..+
T Consensus 6 ~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 6 SPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888888888888888888888877765544443
No 21
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=49.03 E-value=55 Score=24.11 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 020200 164 MKQMQDKVLRSFAEME 179 (329)
Q Consensus 164 l~elkdk~lR~~AEfE 179 (329)
+.+++-.+.++.+|++
T Consensus 58 i~elrr~iq~L~~el~ 73 (77)
T 3trt_A 58 STEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 22
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.50 E-value=28 Score=24.85 Aligned_cols=28 Identities=32% Similarity=0.176 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDK 170 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk 170 (329)
.+.|+...+++..++..+.+++++++.+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555443
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=48.17 E-value=91 Score=26.09 Aligned_cols=41 Identities=10% Similarity=0.130 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 148 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 188 (329)
Q Consensus 148 kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE 188 (329)
+....++..++.+.+++.+|+.++..++-..++.++...+-
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l 115 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL 115 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777777777777777766554433
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=45.78 E-value=1.1e+02 Score=25.57 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 145 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 185 (329)
Q Consensus 145 eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt 185 (329)
.|...++++++++..++.++..++.++--+..+.+.++++.
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~ 119 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEI 119 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433
No 25
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=45.68 E-value=46 Score=27.71 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 020200 167 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 214 (329)
Q Consensus 167 lkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERA 214 (329)
+++.|.-+...|.++++.+.+++.+.. .|+|||+..
T Consensus 69 yK~eY~~L~KkYk~~~~~Ld~eI~~qe------------~iI~nFe~I 104 (119)
T 2avr_X 69 YKSQYQELASKYEDALKKLEAEMEQQK------------AVISDFEKI 104 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 467788888888888888887776554 367777754
No 26
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=44.47 E-value=77 Score=25.37 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
-+|.++|.++..+++..+..++.|.+.-..++.-++|-++..-|-+.
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 36788888888888888888877777766666556666555544433
No 27
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=44.42 E-value=8.6 Score=31.49 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=9.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 139 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKV 171 (329)
Q Consensus 139 ~~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~ 171 (329)
..++.+||.+++-++++++...+.++.+|+|-+
T Consensus 44 ~~lTrdELI~lllk~e~~l~~kd~~IrELEDYI 76 (107)
T 2gzd_C 44 RSLTYEEVLQELVKHKELLRRKDTHIRELEDYI 76 (107)
T ss_dssp -------------------CCHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999988888887777777776544
No 28
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=43.36 E-value=1.1e+02 Score=23.32 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 150 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAK 202 (329)
Q Consensus 150 ~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~k 202 (329)
..++-..++..++++..+++.-.....-...|.+.+..|+ -.+..|+-+++.
T Consensus 13 ~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~-~LK~QAVNKLAE 64 (71)
T 1uix_A 13 KEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTER-TLKTQAVNKLAE 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3333344444444444444444444444457777777777 667777777653
No 29
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=42.00 E-value=91 Score=24.45 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020200 164 MKQMQDKVLRSFAEMENVKDR 184 (329)
Q Consensus 164 l~elkdk~lR~~AEfEN~RKR 184 (329)
+..-++.+.++...+++.+++
T Consensus 53 l~~h~~ei~~le~~i~rhk~~ 73 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444333
No 30
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=41.12 E-value=42 Score=25.27 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 156 LLMAKNEEMKQMQDKVLRSFAEMENVK 182 (329)
Q Consensus 156 ~l~~~~~El~elkdk~lR~~AEfEN~R 182 (329)
.++.++.++.++......+.++.+-+|
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr 56 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLR 56 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333333333
No 31
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.74 E-value=76 Score=26.43 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 149 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 184 (329)
Q Consensus 149 l~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKR 184 (329)
++++++.+|+.+..++.+...++-|++++.+-+.-|
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 344444445555555555444555555544444433
No 32
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=39.76 E-value=1.9e+02 Score=25.87 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeC
Q 020200 241 LLEGVEMTEKQLGEVFKKFGVEKFD 265 (329)
Q Consensus 241 l~eGVemt~kqL~~vL~k~GVe~I~ 265 (329)
++.-++.+.+.. ...||-++.
T Consensus 177 lL~~Yerir~~~----~g~avv~v~ 197 (256)
T 3na7_A 177 IYSFYERIRRWA----KNTSIVTIK 197 (256)
T ss_dssp HHHHHHHHHHHH----GGGSEEECB
T ss_pred HHHHHHHHHHhC----CCceEEEee
Confidence 444455555433 245666664
No 33
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.75 E-value=53 Score=23.36 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 157 LMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 157 l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
.+.++.|+++|+.++..+.+..+-+++|+.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666777777777777777776653
No 34
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=39.18 E-value=96 Score=21.62 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 145 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 191 (329)
Q Consensus 145 eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ 191 (329)
.+...+.+........+.++..++.++-++.+++.+++..+.+-..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566556666677777788888888888888888776654443
No 35
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.25 E-value=46 Score=25.02 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQMQDKV 171 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~elkdk~ 171 (329)
+++.+.+..+++.+.+++.++.+..+..
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI 41 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEI 41 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444444433333
No 36
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=37.09 E-value=1e+02 Score=24.36 Aligned_cols=50 Identities=8% Similarity=0.149 Sum_probs=37.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 139 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 188 (329)
Q Consensus 139 ~~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE 188 (329)
..+++.+|..-+...-+..-.+-.++..+-+.+.+...+|-|+||+.-++
T Consensus 42 ~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~~~d 91 (93)
T 3t98_B 42 SHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGD 91 (93)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34677888877777766677777777788888888888888888876543
No 37
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=36.16 E-value=1.8e+02 Score=23.85 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=8.8
Q ss_pred hcCCHHHHHHHHH
Q 020200 139 IELSRDDLVKLLK 151 (329)
Q Consensus 139 ~~~s~~eL~kl~~ 151 (329)
.+++.++|...+.
T Consensus 58 ~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 58 AGLSIEALIDYLA 70 (142)
T ss_dssp TTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 4677777776654
No 38
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.98 E-value=1.2e+02 Score=29.35 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=9.8
Q ss_pred HHHHHHHHHhCCCeee
Q 020200 249 EKQLGEVFKKFGVEKF 264 (329)
Q Consensus 249 ~kqL~~vL~k~GVe~I 264 (329)
...+..+|..+.+.-|
T Consensus 130 ~~lv~~~l~G~N~tif 145 (403)
T 4etp_A 130 GQLVQSSLDGYNVAIF 145 (403)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhCCcceEEE
Confidence 3456677777766544
No 39
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=35.42 E-value=1.7e+02 Score=23.68 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 185 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt 185 (329)
+++.++|..+..++=+.|..++.+-=++..++.+.--|+..++.|.
T Consensus 41 ~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV 86 (106)
T 1j1d_B 41 HLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRI 86 (106)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHH
Confidence 4788888888888877777777777677777766666666666553
No 40
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=35.01 E-value=1.5e+02 Score=22.52 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 020200 146 LVKLLKEREELLMAKNEEMKQMQDKVLRSF-AEME----NVKDRTIREAENSKKFAIQNFAK 202 (329)
Q Consensus 146 L~kl~~e~ee~l~~~~~El~elkdk~lR~~-AEfE----N~RKRt~rE~e~ak~~A~e~f~k 202 (329)
|.+.+..+..+.+++..+++...+.+.++. .+.+ .|.+.+..|+ -.+..|+-+++.
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L~~E~-~LK~QAVNKLAE 64 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTER-TLKTQAVNKLAE 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 444444444444444455555555444433 3334 5666666666 556666666553
No 41
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=33.45 E-value=34 Score=27.83 Aligned_cols=51 Identities=2% Similarity=0.064 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 020200 164 MKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 214 (329)
Q Consensus 164 l~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERA 214 (329)
.......+.....+|..+++..+++..........++...+-+++..+-..
T Consensus 62 ~~~~~~el~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~~ai~~vak~ 112 (143)
T 1u2m_A 62 RTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANS 112 (143)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777888888888888888888887777777777777666544
No 42
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.18 E-value=1.9e+02 Score=23.18 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLR---SFAEMENVKDRTIREAENS 192 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR---~~AEfEN~RKRt~rE~e~a 192 (329)
-+.+...+..++..+...+.++..|.+.+.+ .+.+.+--++++..|+++.
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554432 2233444455555555544
No 43
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.06 E-value=69 Score=30.72 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQMQ 168 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~elk 168 (329)
..|++++.+.++-+..+++|.....
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATAN 424 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc
Confidence 3355566666665555555554433
No 44
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=32.95 E-value=53 Score=27.32 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020200 167 MQDKVLRSFAEMENVKD 183 (329)
Q Consensus 167 lkdk~lR~~AEfEN~RK 183 (329)
+.+++.++..+...++|
T Consensus 30 l~~~v~~l~~e~k~l~k 46 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRK 46 (171)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444333333
No 45
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=32.75 E-value=92 Score=24.94 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 020200 169 DKVLRSFAEMENV 181 (329)
Q Consensus 169 dk~lR~~AEfEN~ 181 (329)
++...+..++++|
T Consensus 78 nKA~~L~~eLe~F 90 (96)
T 1t3j_A 78 NKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333433
No 46
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.55 E-value=1.8e+02 Score=22.76 Aligned_cols=29 Identities=10% Similarity=0.073 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 142 SRDDLVKLLKEREELLMAKNEEMKQMQDK 170 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~El~elkdk 170 (329)
+.+.|...++.+++++..+++++.++..+
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665555443
No 47
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=32.20 E-value=1.6e+02 Score=22.17 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020200 176 AEMENVKDRTIREAENSK 193 (329)
Q Consensus 176 AEfEN~RKRt~rE~e~ak 193 (329)
.++=|+|-++..|+...+
T Consensus 36 q~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 36 QELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334466666666665554
No 48
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=30.90 E-value=68 Score=21.49 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQMQ 168 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~elk 168 (329)
+.|.+.+..+++++..++.+..+|+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3455666666666666666655554
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.69 E-value=1.9e+02 Score=22.44 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 145 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 183 (329)
Q Consensus 145 eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RK 183 (329)
.|...|...-+.+..++-++++|+.+...+..+.+..+.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555556667777888888888887777777554
No 50
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=30.24 E-value=1.8e+02 Score=25.14 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 142 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
|..++.++.+++...++..++..+.|+ ++..-+..|.|+.+|-+
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~Lq-eL~~Q~vafknLv~RN~ 46 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQ-ELILQQIAFKNLVQRNR 46 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 455666665555554444444433333 23345567888877753
No 51
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.81 E-value=1.7e+02 Score=23.06 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 155 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 185 (329)
Q Consensus 155 e~l~~~~~El~elkdk~lR~~AEfEN~RKRt 185 (329)
.....+..+++.|+....+...+.+.|+.+.
T Consensus 55 ~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 55 NEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444555555554443
No 52
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=29.74 E-value=1.5e+02 Score=21.10 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020200 176 AEMENVKDRTIREAENSK 193 (329)
Q Consensus 176 AEfEN~RKRt~rE~e~ak 193 (329)
.++=|+|-++..|+...+
T Consensus 31 q~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 31 GDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 344466666666665554
No 53
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.46 E-value=1.5e+02 Score=22.95 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 142 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 187 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~r 187 (329)
+.+++...+.. .++.++.+++.+..++......+.+++..+..
T Consensus 67 ~~~ea~~~L~~---~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 67 TKDKAVAELKE---KIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp CHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544443 33444566777777777777777777666543
No 54
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.35 E-value=1.2e+02 Score=29.54 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 020200 181 VKDRTIREAEN 191 (329)
Q Consensus 181 ~RKRt~rE~e~ 191 (329)
.||++-.++.+
T Consensus 46 ~rr~l~n~~~e 56 (403)
T 4etp_A 46 VRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 55
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=28.64 E-value=1.7e+02 Score=23.59 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 184 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKR 184 (329)
+++.++|..+..++=+.|..++.+-=++..++.+.--|+.-++.|
T Consensus 41 ~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~r 85 (107)
T 1ytz_T 41 HLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNR 85 (107)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Confidence 467888888888887777777777667776766666666665555
No 56
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=28.32 E-value=1.7e+02 Score=22.58 Aligned_cols=29 Identities=3% Similarity=0.115 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 154 EELLMAKNEEMKQMQDKVLRSFAEMENVK 182 (329)
Q Consensus 154 ee~l~~~~~El~elkdk~lR~~AEfEN~R 182 (329)
...+++++.+..+|++++..+..+++.-|
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33444455555666666666666655554
No 57
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=27.93 E-value=1e+02 Score=24.98 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 141 LSRDDLVKLLKEREELLMAKNEEMKQMQDKV 171 (329)
Q Consensus 141 ~s~~eL~kl~~e~ee~l~~~~~El~elkdk~ 171 (329)
.+.+++.+.+....++++.++.++..++.++
T Consensus 82 ~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el 112 (117)
T 3kin_B 82 LTAEEWKKKYEKEKEKNKALKSVIQHLEVEL 112 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666555555555555555554444
No 58
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=27.32 E-value=3e+02 Score=24.18 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=29.4
Q ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 142 SRDD-LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 142 s~~e-L~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
++.+ +..++.-.+.....++++++.|.|++.+...++.++++-+.
T Consensus 121 ~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 121 NPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 45666666667777777777777777666666665555443
No 59
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.13 E-value=3.4e+02 Score=24.21 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 188 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE 188 (329)
.++|...++.+...+..++.++++++..+.++..+.+.++.|..+.
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~ 79 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555566666666666666666665555555443
No 60
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.34 E-value=2e+02 Score=28.07 Aligned_cols=15 Identities=7% Similarity=0.264 Sum_probs=8.1
Q ss_pred HHHHHHHHhCCCeee
Q 020200 250 KQLGEVFKKFGVEKF 264 (329)
Q Consensus 250 kqL~~vL~k~GVe~I 264 (329)
..+..+|..+.+.-|
T Consensus 129 plv~~~l~G~n~tif 143 (412)
T 3u06_A 129 PLIQSALDGYNICIF 143 (412)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHCCCceEEE
Confidence 445566666655443
No 61
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.01 E-value=2.1e+02 Score=22.00 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
.+.....+...+..+..+..++.++++++..+..+.+.++.+..
T Consensus 59 ~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 59 DEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555555555555555444444444433
No 62
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.58 E-value=1e+02 Score=28.58 Aligned_cols=36 Identities=3% Similarity=0.165 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 157 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 192 (329)
Q Consensus 157 l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~a 192 (329)
++.++.++..+..+..++.+++.++|+.+.+-+++.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544444443
No 63
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=23.41 E-value=6.4e+02 Score=27.60 Aligned_cols=32 Identities=9% Similarity=0.319 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 154 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 185 (329)
Q Consensus 154 ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt 185 (329)
+.++..++++++++++++.++..|.+.+..+.
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666665555554444
No 64
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=22.92 E-value=1.5e+02 Score=18.73 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQM 167 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~el 167 (329)
+.|.+..+.++.++..+++.++.+
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777666654
No 65
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.90 E-value=2.2e+02 Score=21.57 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 142 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 142 s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~ 186 (329)
+.+++...+.. .++.++.+++.+..++......+.+++..+.
T Consensus 62 ~~~e~~~~L~~---~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 62 AKDELTEELQE---KLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp CHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544443 3344456677777777777777777766543
No 66
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.54 E-value=83 Score=30.94 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 156 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 193 (329)
Q Consensus 156 ~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak 193 (329)
..+.++.++..++.+..|...+..+++++.....++.+
T Consensus 33 r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~ 70 (434)
T 4b4t_M 33 RAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIK 70 (434)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677778888888888888777766555444
No 67
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=22.11 E-value=3.1e+02 Score=27.55 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 020200 179 ENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVF 256 (329)
Q Consensus 179 EN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D~~~~~~~lk~l~eGVemt~kqL~~vL 256 (329)
+=|+||++-++.++.+.+ .++..|+-++|+++..+..+..+ .+ .......|.+.+.++..|...+|
T Consensus 341 ~~~~rR~~~~L~k~~~r~--hilegl~~a~~~iD~vI~iIr~s-------~~---~~~a~~~L~~~f~lse~Qa~aIl 406 (470)
T 3ilw_A 341 DVIVRRTTYRLRKANERA--HILRGLVKALDALDEVIALIRAS-------ET---VDIARAGLIELLDIDEIQAQAIL 406 (470)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTHHHHHHHHHHC-------SS---HHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhC-------CC---HHHHHHHHHHhcCCCHHHHHHHH
Confidence 446777777777666553 56777888888899888766541 11 11234566666766666766665
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.97 E-value=5.2e+02 Score=24.59 Aligned_cols=16 Identities=0% Similarity=0.117 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 020200 173 RSFAEMENVKDRTIRE 188 (329)
Q Consensus 173 R~~AEfEN~RKRt~rE 188 (329)
|...+++.++++.++.
T Consensus 432 ~~~~~~~~~~~~~~~~ 447 (487)
T 3oja_A 432 NAIRDWDMYQHKETQL 447 (487)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHH
Confidence 3444444444444333
No 69
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=21.79 E-value=1.3e+02 Score=18.96 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020200 144 DDLVKLLKEREELLMAKNEEMKQ 166 (329)
Q Consensus 144 ~eL~kl~~e~ee~l~~~~~El~e 166 (329)
|+|..+++-++.+-+.++..+++
T Consensus 2 dqlnallasleaenkqlkakvee 24 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEE 24 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544444444443333
No 70
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.69 E-value=1.7e+02 Score=18.76 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020200 146 LVKLLKEREELLMAKNEEMKQMQ 168 (329)
Q Consensus 146 L~kl~~e~ee~l~~~~~El~elk 168 (329)
|++.++.+..++..++=++..++
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 71
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=21.55 E-value=2.3e+02 Score=20.32 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 141 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 185 (329)
Q Consensus 141 ~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt 185 (329)
.+-|+|.++++.+..+-.-+++|+++--..+-++.-|.-|++.-+
T Consensus 3 asYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 3 ASYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 356889999998888888888888888888888887777776543
No 72
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.50 E-value=2.9e+02 Score=21.40 Aligned_cols=20 Identities=5% Similarity=0.011 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020200 167 MQDKVLRSFAEMENVKDRTI 186 (329)
Q Consensus 167 lkdk~lR~~AEfEN~RKRt~ 186 (329)
+..+..+++.|-.+...|+.
T Consensus 53 L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444445444444443
No 73
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.37 E-value=2.1e+02 Score=19.69 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=18.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 139 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVL 172 (329)
Q Consensus 139 ~~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~l 172 (329)
.+.|+++|..+.. ++..+++.+..++.+++
T Consensus 15 egfspeelaales----elqalekklaalksklq 44 (48)
T 1g6u_A 15 EGFSPEELAALES----ELQALEKKLAALKSKLQ 44 (48)
T ss_dssp TTCSHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3567777765543 45556667777776654
No 74
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=20.97 E-value=2.7e+02 Score=23.35 Aligned_cols=44 Identities=7% Similarity=0.058 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHH
Q 020200 167 MQDKVLRSFAEMENVKDRTIR--EAENSKKFAIQNFAKALLDVADN 210 (329)
Q Consensus 167 lkdk~lR~~AEfEN~RKRt~r--E~e~ak~~A~e~f~kdLLpVlDn 210 (329)
+.+....+.++..-+.++..- ......+-...++++||-..+|.
T Consensus 14 ~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdkId~ 59 (129)
T 3f6n_A 14 ILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLIND 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHhc
Confidence 333333344444444444433 12244455566777777777664
No 75
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.85 E-value=1.1e+02 Score=21.71 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 140 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSF 175 (329)
Q Consensus 140 ~~s~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~ 175 (329)
+-.++++..-+.+....++.+.+++.+|++++.++.
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666667777777777777766554
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.82 E-value=5.8e+02 Score=24.72 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC
Q 020200 239 KSLLEGVEMTEKQLGEVFKKFG 260 (329)
Q Consensus 239 k~l~eGVemt~kqL~~vL~k~G 260 (329)
..+.+-+.-+..++.+.+++.+
T Consensus 561 ~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 561 AELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555666555543
No 77
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.67 E-value=2.1e+02 Score=19.50 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 143 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 179 (329)
Q Consensus 143 ~~eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfE 179 (329)
..+|+..+.++++ ...+++.+++.+.-+.|+++
T Consensus 5 vkelknyiqelee----rnaelknlkehlkfakaele 37 (46)
T 3he4_B 5 VKELKNYIQELEE----RNAELKNLKEHLKFAKAELE 37 (46)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HhHHHHhHHHHHHHHHHHHH
Confidence 4566666665444 34556667776666666553
No 78
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.52 E-value=2.2e+02 Score=21.87 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 156 LLMAKNEEMKQMQDKVLRSFAEMENVKDR 184 (329)
Q Consensus 156 ~l~~~~~El~elkdk~lR~~AEfEN~RKR 184 (329)
.+..+..++.+++.....+....+.+++.
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~ 39 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTA 39 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333
No 79
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=20.46 E-value=3.1e+02 Score=21.42 Aligned_cols=8 Identities=25% Similarity=0.314 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 020200 174 SFAEMENV 181 (329)
Q Consensus 174 ~~AEfEN~ 181 (329)
+.+++...
T Consensus 49 lE~eL~~~ 56 (95)
T 3mov_A 49 KEREMAEI 56 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 80
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=20.45 E-value=2.1e+02 Score=25.25 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 147 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 187 (329)
Q Consensus 147 ~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~r 187 (329)
..++.=+-..+..++.++..++....|++-|+....+|++|
T Consensus 144 ~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlEk 184 (184)
T 3w03_C 144 RELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFEK 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566666667777788888888888888888887777764
No 81
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.28 E-value=2.9e+02 Score=20.98 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 020200 155 ELLMAKNEEMKQMQDKVLRSFAE---MENVKDRTIREAENSK 193 (329)
Q Consensus 155 e~l~~~~~El~elkdk~lR~~AE---fEN~RKRt~rE~e~ak 193 (329)
..+..++.++..++....|...| +=|+|-++..|+...+
T Consensus 35 ~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 35 RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333444444444443333333 3355555555555444
No 82
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.20 E-value=2.6e+02 Score=27.16 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020200 165 KQMQDKVLRSFAEMENVK 182 (329)
Q Consensus 165 ~elkdk~lR~~AEfEN~R 182 (329)
++++.+..+++++.+.++
T Consensus 20 ~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 20 EELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 83
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.09 E-value=2.2e+02 Score=21.26 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020200 145 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMEN 180 (329)
Q Consensus 145 eL~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN 180 (329)
+|...+.+++.....+..+...|+..+.++..+..-
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555555555443
Done!