Query 020201
Match_columns 329
No_of_seqs 159 out of 1138
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:51:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 5.5E-59 1.2E-63 447.8 24.4 237 88-328 133-384 (408)
2 PLN03133 beta-1,3-galactosyltr 100.0 9.6E-52 2.1E-56 418.4 25.5 226 89-320 380-612 (636)
3 KOG2288 Galactosyltransferases 100.0 2.5E-52 5.4E-57 375.4 17.2 235 91-328 8-249 (274)
4 KOG2287 Galactosyltransferases 100.0 1.3E-50 2.8E-55 391.3 24.3 221 93-320 94-325 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 1.2E-48 2.6E-53 348.7 17.2 189 108-303 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 4E-34 8.7E-39 272.2 18.0 217 88-320 74-343 (382)
7 PF02434 Fringe: Fringe-like; 99.8 9.1E-21 2E-25 175.9 11.2 191 94-307 6-207 (252)
8 KOG2246 Galactosyltransferases 99.7 3.7E-17 8E-22 158.5 13.3 173 88-303 85-269 (364)
9 PLN03153 hypothetical protein; 99.4 6.7E-11 1.5E-15 117.6 20.4 182 92-308 120-318 (537)
10 KOG3708 Uncharacterized conser 97.6 0.00054 1.2E-08 68.4 10.4 154 95-298 27-188 (681)
11 TIGR03472 HpnI hopanoid biosyn 96.6 0.085 1.8E-06 51.6 15.4 161 134-300 71-243 (373)
12 PF13641 Glyco_tranf_2_3: Glyc 96.4 0.046 1E-06 48.6 11.5 189 95-301 2-201 (228)
13 PF13506 Glyco_transf_21: Glyc 96.3 0.016 3.6E-07 50.7 7.6 123 176-304 17-148 (175)
14 PF01755 Glyco_transf_25: Glyc 96.2 0.098 2.1E-06 46.2 12.2 93 98-206 4-101 (200)
15 cd02520 Glucosylceramide_synth 95.9 0.45 9.7E-06 41.6 14.9 135 134-300 31-167 (196)
16 TIGR03469 HonB hopene-associat 95.8 0.51 1.1E-05 46.3 16.4 156 134-297 71-249 (384)
17 cd04186 GT_2_like_c Subfamily 95.1 1.2 2.5E-05 36.7 14.1 85 187-301 71-156 (166)
18 cd04192 GT_2_like_e Subfamily 95.0 1.3 2.7E-05 38.9 15.0 158 134-297 29-195 (229)
19 PRK11204 N-glycosyltransferase 94.5 1.2 2.7E-05 43.8 14.7 149 138-298 87-248 (420)
20 cd02510 pp-GalNAc-T pp-GalNAc- 94.5 2.6 5.5E-05 39.5 16.2 115 181-296 74-211 (299)
21 cd06532 Glyco_transf_25 Glycos 94.2 0.46 9.9E-06 39.3 9.3 115 98-274 2-117 (128)
22 PF00535 Glycos_transf_2: Glyc 93.7 0.89 1.9E-05 37.1 10.2 131 134-270 28-168 (169)
23 cd06435 CESA_NdvC_like NdvC_li 93.6 2.7 5.9E-05 37.3 14.1 156 133-299 28-198 (236)
24 cd06421 CESA_CelA_like CESA_Ce 93.6 0.45 9.8E-06 42.1 8.8 113 182-298 76-199 (234)
25 PRK14583 hmsR N-glycosyltransf 93.5 3 6.5E-05 41.7 15.4 181 94-298 75-269 (444)
26 cd02525 Succinoglycan_BP_ExoA 93.4 5.3 0.00011 35.4 17.5 159 133-301 31-199 (249)
27 cd04196 GT_2_like_d Subfamily 93.2 1.5 3.3E-05 37.9 11.4 155 133-296 27-190 (214)
28 cd06420 GT2_Chondriotin_Pol_N 92.9 2.6 5.6E-05 35.6 12.2 98 181-298 70-168 (182)
29 cd02526 GT2_RfbF_like RfbF is 92.7 2.4 5.2E-05 37.6 12.3 137 159-299 46-193 (237)
30 cd06434 GT2_HAS Hyaluronan syn 92.7 3 6.4E-05 36.9 12.8 153 134-298 29-201 (235)
31 cd04184 GT2_RfbC_Mx_like Myxoc 92.6 6 0.00013 33.9 16.5 116 180-302 73-193 (202)
32 cd04185 GT_2_like_b Subfamily 92.1 2 4.4E-05 37.2 10.8 95 178-299 68-163 (202)
33 cd04187 DPM1_like_bac Bacteria 92.0 1 2.2E-05 38.4 8.6 135 133-273 29-165 (181)
34 cd06427 CESA_like_2 CESA_like_ 91.9 6.5 0.00014 35.3 14.2 118 180-301 74-203 (241)
35 cd06433 GT_2_WfgS_like WfgS an 91.6 4.9 0.00011 34.0 12.4 117 179-299 64-183 (202)
36 cd04191 Glucan_BSP_ModH Glucan 91.4 3.5 7.5E-05 38.3 11.9 191 98-298 3-219 (254)
37 COG1215 Glycosyltransferases, 90.5 2.8 6.1E-05 41.1 11.0 183 94-298 54-253 (439)
38 cd04195 GT2_AmsE_like GT2_AmsE 90.5 11 0.00023 32.4 14.2 151 134-298 30-189 (201)
39 TIGR03030 CelA cellulose synth 89.9 21 0.00045 38.3 17.6 119 173-298 212-346 (713)
40 cd06437 CESA_CaSu_A2 Cellulose 89.8 11 0.00024 33.5 13.4 112 181-300 78-203 (232)
41 cd06423 CESA_like CESA_like is 89.7 2.9 6.2E-05 34.0 8.9 94 179-272 67-171 (180)
42 cd04179 DPM_DPG-synthase_like 89.4 1.9 4E-05 36.6 7.8 130 134-271 29-167 (185)
43 PF04646 DUF604: Protein of un 89.0 0.53 1.1E-05 43.7 4.2 52 256-307 12-66 (255)
44 cd06438 EpsO_like EpsO protein 88.8 4.8 0.00011 34.4 10.1 86 180-269 70-169 (183)
45 COG1216 Predicted glycosyltran 87.9 24 0.00053 33.2 16.2 135 159-297 55-207 (305)
46 cd06439 CESA_like_1 CESA_like_ 87.8 20 0.00043 32.0 17.0 184 94-300 29-219 (251)
47 TIGR01556 rhamnosyltran L-rham 86.9 10 0.00022 35.0 11.6 135 157-297 42-188 (281)
48 PRK11498 bcsA cellulose syntha 86.8 19 0.00042 39.4 15.0 116 176-298 326-457 (852)
49 TIGR03111 glyc2_xrt_Gpos1 puta 85.5 24 0.00053 35.2 14.2 111 180-294 121-250 (439)
50 PF13632 Glyco_trans_2_3: Glyc 84.6 3.2 6.9E-05 35.8 6.6 102 193-299 1-113 (193)
51 PLN02726 dolichyl-phosphate be 84.1 31 0.00068 31.0 14.6 157 133-301 40-209 (243)
52 PRK14716 bacteriophage N4 adso 80.2 44 0.00095 34.4 13.7 188 94-299 66-278 (504)
53 cd06442 DPM1_like DPM1_like re 78.9 43 0.00092 29.1 12.8 89 182-271 70-167 (224)
54 PRK05454 glucosyltransferase M 76.3 67 0.0015 34.4 14.2 198 90-299 120-345 (691)
55 PF10111 Glyco_tranf_2_2: Glyc 76.0 51 0.0011 30.7 12.0 160 133-298 34-210 (281)
56 PRK10714 undecaprenyl phosphat 75.7 42 0.00092 32.1 11.6 134 133-273 38-175 (325)
57 cd02522 GT_2_like_a GT_2_like_ 75.1 54 0.0012 28.3 14.9 106 183-298 65-175 (221)
58 cd00761 Glyco_tranf_GTA_type G 68.6 53 0.0012 25.5 12.9 84 180-296 67-151 (156)
59 cd02514 GT13_GLCNAC-TI GT13_GL 66.8 46 0.00099 32.4 9.6 82 181-270 88-174 (334)
60 PRK11234 nfrB bacteriophage N4 65.5 2E+02 0.0044 31.0 15.9 189 93-299 62-275 (727)
61 cd04188 DPG_synthase DPG_synth 61.4 66 0.0014 27.9 9.0 159 133-302 30-200 (211)
62 cd04190 Chitin_synth_C C-termi 60.2 10 0.00022 34.4 3.7 111 189-299 72-209 (244)
63 cd06913 beta3GnTL1_like Beta 1 57.9 71 0.0015 27.8 8.6 44 182-225 76-119 (219)
64 PF13704 Glyco_tranf_2_4: Glyc 56.4 58 0.0013 24.7 6.9 71 132-207 17-88 (97)
65 KOG2547 Ceramide glucosyltrans 54.9 83 0.0018 31.2 8.9 104 190-297 170-284 (431)
66 PLN03181 glycosyltransferase; 49.9 2.9E+02 0.0063 27.9 15.0 49 156-204 161-212 (453)
67 PRK14740 kdbF potassium-transp 46.9 29 0.00062 21.3 2.8 23 24-46 4-26 (29)
68 COG3306 Glycosyltransferase in 46.7 1.2E+02 0.0025 28.4 8.3 43 254-296 154-196 (255)
69 PRK10018 putative glycosyl tra 46.4 2.5E+02 0.0055 26.2 12.2 35 181-215 76-110 (279)
70 COG2943 MdoH Membrane glycosyl 44.3 2.2E+02 0.0048 29.8 10.2 111 96-215 146-265 (736)
71 PHA03164 hypothetical protein; 43.6 24 0.00051 26.8 2.6 25 19-43 56-81 (88)
72 PF12606 RELT: Tumour necrosis 43.0 53 0.0012 22.9 4.1 34 22-57 2-35 (50)
73 PHA01631 hypothetical protein 40.8 82 0.0018 27.6 5.8 92 159-273 39-133 (176)
74 cd06436 GlcNAc-1-P_transferase 33.7 2.6E+02 0.0057 23.8 8.2 75 191-270 90-178 (191)
75 PF03672 UPF0154: Uncharacteri 32.9 51 0.0011 24.2 2.8 21 23-43 1-22 (64)
76 PTZ00260 dolichyl-phosphate be 32.6 4.5E+02 0.0098 25.1 15.7 197 90-298 66-280 (333)
77 PF07172 GRP: Glycine rich pro 31.3 47 0.001 26.2 2.7 20 17-38 1-20 (95)
78 COG4092 Predicted glycosyltran 30.5 1.7E+02 0.0036 27.9 6.5 178 107-297 19-219 (346)
79 PF15048 OSTbeta: Organic solu 29.5 48 0.001 27.5 2.5 35 7-42 24-58 (125)
80 TIGR02115 potass_kdpF K+-trans 29.5 68 0.0015 19.3 2.5 19 28-46 3-21 (26)
81 PF03452 Anp1: Anp1; InterPro 29.5 2.8E+02 0.0061 26.2 7.9 86 131-216 54-168 (269)
82 PF03071 GNT-I: GNT-I family; 29.3 4E+02 0.0086 27.0 9.4 86 176-271 173-270 (434)
83 PF06306 CgtA: Beta-1,4-N-acet 28.3 1.4E+02 0.0031 29.0 5.8 64 150-213 128-198 (347)
84 PF09604 Potass_KdpF: F subuni 27.1 93 0.002 18.5 2.7 19 28-46 4-22 (25)
85 KOG2859 DNA repair protein, me 22.9 2.1E+02 0.0045 26.6 5.5 52 159-214 37-95 (293)
86 COG3763 Uncharacterized protei 21.8 81 0.0018 23.6 2.2 16 23-38 8-24 (71)
87 PRK14759 potassium-transportin 20.4 1.5E+02 0.0032 18.3 2.8 21 26-46 6-26 (29)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=5.5e-59 Score=447.83 Aligned_cols=237 Identities=37% Similarity=0.671 Sum_probs=208.9
Q ss_pred CCCCCCeeEEEEEeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCC--CHHHHHHHHHHHhhCCCEEEe
Q 020201 88 NIKRHKVMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTN--DQSKMAELRKEVAEYDDFILL 165 (329)
Q Consensus 88 ~~~~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~--~~~~~~~l~~E~~~~~DiI~~ 165 (329)
...+++++++|+|+|+++|++||++||+||++.... +.+++...++.++||+|++. +...+.+|++|+++|+|||++
T Consensus 133 ~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~-~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~l 211 (408)
T PLN03193 133 SSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEK-RKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRL 211 (408)
T ss_pred CCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCccc-ccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEE
Confidence 455778999999999999999999999999997532 33444567899999999987 456788999999999999999
Q ss_pred ccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCCCCccccccc
Q 020201 166 DIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQSY 245 (329)
Q Consensus 166 d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~~Kwyvs~~~ 245 (329)
||.|+|.|||.||+++|+|+.++++++||||+|||+|||+++|..+|+.....+++|+|+++.+|+ |++.++||.+.++
T Consensus 212 DfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPv-r~~~~~ky~epe~ 290 (408)
T PLN03193 212 DHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPV-LSQKGVRYHEPEY 290 (408)
T ss_pred ecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCcc-ccCCCCcCcCccc
Confidence 999999999999999999999999999999999999999999999998876666799999988888 6665555555555
Q ss_pred c----CCCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCceeeCCCccc---CCCCCC-----
Q 020201 246 L----LGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDNRELCQ---SDCTSS----- 313 (329)
Q Consensus 246 y----~~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~~~~~~~~~---~~c~~~----- 313 (329)
| +++.|||||+|+|||||+++|+.|+.. ...++.+.+|||++|.||..++|+++|+++||. +.|+..
T Consensus 291 w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n-~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~ 369 (408)
T PLN03193 291 WKFGENGNKYFRHATGQLYAISKDLASYISIN-QHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGN 369 (408)
T ss_pred ccccCccccCCCCCCcceEEehHHHHHHHHhC-hhhhcccCcchhhhhhHhccCCceeeecccccCCCCccccccccCCC
Confidence 5 679999999999999999999999864 467888999999999999999999999999997 678743
Q ss_pred -eEEEEecCCcccccc
Q 020201 314 -FIAVWDIPKCSGWWL 328 (329)
Q Consensus 314 -~~a~~~~~~~~~~~~ 328 (329)
-+|+||. ||||+|+
T Consensus 370 ~c~~~~~~-~csg~c~ 384 (408)
T PLN03193 370 ICVASFDW-SCSGICR 384 (408)
T ss_pred eeEEEecc-cCcccCC
Confidence 4999999 9999997
No 2
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=9.6e-52 Score=418.37 Aligned_cols=226 Identities=25% Similarity=0.436 Sum_probs=201.8
Q ss_pred CCCCCeeEEEEEeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccc
Q 020201 89 IKRHKVMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIE 168 (329)
Q Consensus 89 ~~~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~ 168 (329)
.+..+++++|+|+|+++|++||++||+|||+... ..+..+.++|++|.+.++..+..|++|+++|+||||+||.
T Consensus 380 ~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~------~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~ 453 (636)
T PLN03133 380 SPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA------VRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFV 453 (636)
T ss_pred CCCCceEEEEEEeCCcccHHHHHHHHHhhccccc------cCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeee
Confidence 3467799999999999999999999999999642 1234689999999998888899999999999999999999
Q ss_pred cccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEecc-ccccccCCCCCccccccccC
Q 020201 169 EEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMK-KGPVFTDPHLKWYEPQSYLL 247 (329)
Q Consensus 169 D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~-~~pv~Rd~~~Kwyvs~~~y~ 247 (329)
|+|+|||+||++++.|+..|++++|+||+|||+|||+++|+++|+.......+|+|++. ..+++|++.+|||+|.++||
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp 533 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWP 533 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCC
Confidence 99999999999999999889999999999999999999999999876666679999985 34455999999999999999
Q ss_pred CCCCCCCCcCCceeecHHHHHHHHHhh-CcCCCCCCcchHHHHHHHHhC---C--CceeeCCCcccCCCCCCeEEEEec
Q 020201 248 GKEYFLHAYGPLYALSADVVVSLVALK-NNSFRMFSNEDVTIGSWMLAM---N--VNHEDNRELCQSDCTSSFIAVWDI 320 (329)
Q Consensus 248 ~~~yp~y~~G~gYvlS~~~v~~l~~~~-~~~~~~~~~EDv~iG~~l~~~---g--V~~~~~~~~~~~~c~~~~~a~~~~ 320 (329)
.+.|||||+|+|||||+++|+.|+++. ...++++++||||+|+|+.++ | +.+.++.+||..+|..+.|.+|..
T Consensus 534 ~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~~H~~ 612 (636)
T PLN03133 534 EETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVAHYQ 612 (636)
T ss_pred CCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEEEecC
Confidence 999999999999999999999998753 357899999999999998743 4 456778899999999999999865
No 3
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-52 Score=375.35 Aligned_cols=235 Identities=47% Similarity=0.783 Sum_probs=219.7
Q ss_pred CCCeeEEEEEeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEecc-CCCHHHHHHHHHHHhhCCCEEEec-cc
Q 020201 91 RHKVMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGR-TNDQSKMAELRKEVAEYDDFILLD-IE 168 (329)
Q Consensus 91 ~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~-~~~~~~~~~l~~E~~~~~DiI~~d-~~ 168 (329)
+++++++|+|.|++++..||+.+|+||++.. ++|.++++..++.++|++|. +.....+.+|++|.++|+|++.+| ..
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~-~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSG-EGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCc-cchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 7899999999999999999999999999984 55788888999999999999 556778999999999999999999 99
Q ss_pred cccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCCCCccccccccCC
Q 020201 169 EEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQSYLLG 248 (329)
Q Consensus 169 D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~~Kwyvs~~~y~~ 248 (329)
|+|.+|+.||+++|.++..+++++|++|+|||+|||++.|...|++++.++++|+||++++||+.++++|||+|.+.+ +
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~EpeWkf-g 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPEWKF-G 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChhhhc-C
Confidence 999999999999999999999999999999999999999999999998889999999999999999999999998443 3
Q ss_pred CC--CCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCceeeCCCcccCCC---CCCeEEEEecCCc
Q 020201 249 KE--YFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDNRELCQSDC---TSSFIAVWDIPKC 323 (329)
Q Consensus 249 ~~--yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~~~~~~~~~~~c---~~~~~a~~~~~~~ 323 (329)
+. |.+|+.|++|+||++++..|.. +...++.+..|||.+|.|+..++|+++|++++|.+.| ...+.++|+.+||
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~i-n~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~~~~~~~~~~~~~~~kc 244 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISI-NRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTPKALAGMVCAASFDWKC 244 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHH-hHHHHHhhccCCcccceeeeeeeeeEecCCcccccchhhhccceeeeeecccc
Confidence 33 9999999999999999999965 4577889999999999999999999999999999999 8999999999999
Q ss_pred ccccc
Q 020201 324 SGWWL 328 (329)
Q Consensus 324 ~~~~~ 328 (329)
||+|.
T Consensus 245 sglC~ 249 (274)
T KOG2288|consen 245 SGLCK 249 (274)
T ss_pred cccCc
Confidence 99995
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-50 Score=391.33 Aligned_cols=221 Identities=26% Similarity=0.424 Sum_probs=202.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCH-HHHHHHHHHHhhCCCEEEecccccc
Q 020201 93 KVMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQ-SKMAELRKEVAEYDDFILLDIEEEY 171 (329)
Q Consensus 93 ~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~-~~~~~l~~E~~~~~DiI~~d~~D~y 171 (329)
.++++++|.|+++|++||++||+|||+... ..+.+++.+|++|.+.++ ..+..|.+|++.||||||.||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~------v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN------VRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc------cCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEecccch
Confidence 389999999999999999999999999964 246689999999999865 3478899999999999999999999
Q ss_pred CCchhHHHHHHHHHhh-cCCcceEEEeCCceEEcHHHHHHHHhhc-CCCCCceEEecc-ccccccCCCCCccccccccCC
Q 020201 172 SKLPYKTLAFFKAAYA-LYDSEFYVKADDDIYLRPDRLSLLLAKE-RPHSQTYLGCMK-KGPVFTDPHLKWYEPQSYLLG 248 (329)
Q Consensus 172 ~nlt~Ktl~~l~w~~~-~~~~~fvlK~DDD~~Vn~~~L~~~L~~~-~~~~~~y~G~~~-~~pv~Rd~~~Kwyvs~~~y~~ 248 (329)
.|+|+|++++++|+.+ |++++|++|+|||+|||+++|+.+|.+. .+.+.+|.|++. ..+++|++.+|||||.++||.
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y~~ 247 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEYPC 247 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHCCC
Confidence 9999999999999998 8999999999999999999999999998 778889999984 456669999999999999999
Q ss_pred CCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhC-CCceeeCCCc------ccCCCCCCeEEEEec
Q 020201 249 KEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAM-NVNHEDNREL------CQSDCTSSFIAVWDI 320 (329)
Q Consensus 249 ~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~-gV~~~~~~~~------~~~~c~~~~~a~~~~ 320 (329)
+.||+||+|+|||+|+++|++|+++ +.+.+.+++|||++|+|+++. ||.+.+...+ ++..|..+.+++|..
T Consensus 248 ~~YP~Y~sG~gYvis~~~a~~l~~~-s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 325 (349)
T KOG2287|consen 248 SVYPPYASGPGYVISGDAARRLLKA-SKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPLSFDPCCYRDLLAVHRL 325 (349)
T ss_pred CCCCCcCCCceeEecHHHHHHHHHH-hcCCCccchHHHHHHHHHHHhcCCCcccCcccccccccCCCCcccceEEEecC
Confidence 9999999999999999999999996 588999999999999999987 9999988763 357788999999988
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=1.2e-48 Score=348.67 Aligned_cols=189 Identities=30% Similarity=0.493 Sum_probs=169.6
Q ss_pred HHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCC--CHHHHHHHHHHHhhCCCEEEeccccccCCchhHHHHHHHHH
Q 020201 108 GRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTN--DQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAA 185 (329)
Q Consensus 108 ~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~--~~~~~~~l~~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~ 185 (329)
+||++||+||++.... ...+++++|++|.+. ++..+..|++|+++|+||||+|+.|+|+|+|+||+++|+|+
T Consensus 1 ~rR~~IR~TW~~~~~~------~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~ 74 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNF------KGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWA 74 (195)
T ss_pred ChHHHHHHHHhccccc------CCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHH
Confidence 5899999999998642 357899999999998 66678889999999999999999999999999999999999
Q ss_pred hh-cCCcceEEEeCCceEEcHHHHHHHHhhc--CC-CCCceEEeccccccccCCCCCccccccccCCCCCCCCCcCCcee
Q 020201 186 YA-LYDSEFYVKADDDIYLRPDRLSLLLAKE--RP-HSQTYLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLYA 261 (329)
Q Consensus 186 ~~-~~~~~fvlK~DDD~~Vn~~~L~~~L~~~--~~-~~~~y~G~~~~~pv~Rd~~~Kwyvs~~~y~~~~yp~y~~G~gYv 261 (329)
.+ |++++|++|+|||+|||+++|.++|... .. +..+|+++...+++.|++.+|||+|.++||.+.||+||+|++|+
T Consensus 75 ~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yv 154 (195)
T PF01762_consen 75 SKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYV 154 (195)
T ss_pred HhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEE
Confidence 99 6679999999999999999999999987 23 33445555666677799999999999999999999999999999
Q ss_pred ecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCceeeCC
Q 020201 262 LSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDNR 303 (329)
Q Consensus 262 lS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~~~~~ 303 (329)
||+++|+.|++++ ..++.+++|||++|+|+.++||+++|++
T Consensus 155 ls~~~v~~i~~~~-~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 155 LSSDVVKRIYKAS-SHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred ecHHHHHHHHHHh-hcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999874 6789999999999999999999999874
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=4e-34 Score=272.21 Aligned_cols=217 Identities=18% Similarity=0.226 Sum_probs=170.8
Q ss_pred CCCCCCeeEEEEEeCCCCC--HHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCH--HHHHHHHHHHhhCCCEE
Q 020201 88 NIKRHKVMGFVGIQTGFGS--GGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQ--SKMAELRKEVAEYDDFI 163 (329)
Q Consensus 88 ~~~~~~~~lli~V~S~~~~--~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~--~~~~~l~~E~~~~~DiI 163 (329)
...+++..++++|.|..++ +.||+++|+||.+....+-..+.-...+.++|++|..++. +.+++|++|+++|+|||
T Consensus 74 ~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIV 153 (382)
T PTZ00210 74 VWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDII 153 (382)
T ss_pred HhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEE
Confidence 4778889999999999887 8899999999998865332222123456788999999877 78999999999999999
Q ss_pred Eecc------------------ccccCCchhHHHHHHHHHhh-cCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEE
Q 020201 164 LLDI------------------EEEYSKLPYKTLAFFKAAYA-LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLG 224 (329)
Q Consensus 164 ~~d~------------------~D~y~nlt~Ktl~~l~w~~~-~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G 224 (329)
++|| .|++.++++||+++++|+.+ |++++|++|+|||+|||++++++.|+.. ++..+|+|
T Consensus 154 ilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G 232 (382)
T PTZ00210 154 TLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG 232 (382)
T ss_pred EEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence 9999 77788999999999999999 7799999999999999999999999765 45579999
Q ss_pred eccc-cccccCCCCCccccccccCCCCCCCCCcCCceeecHHHHHHHHHhhC-cCC---------------CCCCcchHH
Q 020201 225 CMKK-GPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLYALSADVVVSLVALKN-NSF---------------RMFSNEDVT 287 (329)
Q Consensus 225 ~~~~-~pv~Rd~~~Kwyvs~~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~~~-~~~---------------~~~~~EDv~ 287 (329)
.+.. ..+.|+ .+||||+|+||+||+|+|+.|++... ..+ -.+..||+.
T Consensus 233 ~v~~~~~p~Rd---------------~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiM 297 (382)
T PTZ00210 233 RYNYYNRIWRR---------------NQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVM 297 (382)
T ss_pred eeCCCCccccC---------------CCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHH
Confidence 9753 112243 25999999999999999999997521 112 247899999
Q ss_pred HHHHHH-hCCCc---eeeC--CCc-------ccCCCCCCeEEEEec
Q 020201 288 IGSWML-AMNVN---HEDN--REL-------CQSDCTSSFIAVWDI 320 (329)
Q Consensus 288 iG~~l~-~~gV~---~~~~--~~~-------~~~~c~~~~~a~~~~ 320 (329)
+|.+++ +++-+ .++. -+| +.++=++++|+||.+
T Consensus 298 vG~vLr~~~k~~~l~~V~~~~c~Fhd~~~~~~~~~v~~~sVvvHhi 343 (382)
T PTZ00210 298 VGMILREKVVYRNLISVEMGRCHFHNAGKFGVRKSVRNMSVVIHHI 343 (382)
T ss_pred HHHHHHHhcCcCceeeeccccccceecCCCCCccccccceEEEEec
Confidence 999995 44321 1111 112 224457999999987
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.84 E-value=9.1e-21 Score=175.88 Aligned_cols=191 Identities=17% Similarity=0.220 Sum_probs=101.8
Q ss_pred eeEEEEEeCCCCCH-HHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccC
Q 020201 94 VMGFVGIQTGFGSG-GRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYS 172 (329)
Q Consensus 94 ~~lli~V~S~~~~~-~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~ 172 (329)
-+++|+|+|++++. .|-.+|++||++.++ . ..|+.....++ .+..+ ...+++..+..+.+.
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~----------~--~~~ifsd~~d~----~l~~~--~~~~l~~~~~~~~~~ 67 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCN----------K--QTFIFSDAEDP----SLPTV--TGVHLVNPNCDAGHC 67 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSG----------G--GEEEEESS--H----HHHHH--HGGGEEE--------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcC----------C--ceEEecCcccc----ccccc--cccccccCCCcchhh
Confidence 36899999999854 556999999999974 1 23543333332 22222 345677777777766
Q ss_pred CchhHHHHHHHHHhh-cCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEecc-ccccccCCCCCccccccccCCCC
Q 020201 173 KLPYKTLAFFKAAYA-LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMK-KGPVFTDPHLKWYEPQSYLLGKE 250 (329)
Q Consensus 173 nlt~Ktl~~l~w~~~-~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~-~~pv~Rd~~~Kwyvs~~~y~~~~ 250 (329)
...++.++.+.+... ..+.+|++++|||+||++++|.++|...++.+++|+|+.. ..|. ... .+ .. ........
T Consensus 68 ~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~-~~~-~~-~~-~~~~~~~~ 143 (252)
T PF02434_consen 68 RKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPI-EII-HR-FN-PNKSKDSG 143 (252)
T ss_dssp -----HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE------------------------
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccc-eee-cc-cc-ccccCcCc
Confidence 666666666665444 4688999999999999999999999999999999999863 2232 100 00 00 00001122
Q ss_pred CCCCC-cCCceeecHHHHHHHHHhh--CcCCC----CCCcchHHHHHHHHh-CCCceeeCCCccc
Q 020201 251 YFLHA-YGPLYALSADVVVSLVALK--NNSFR----MFSNEDVTIGSWMLA-MNVNHEDNRELCQ 307 (329)
Q Consensus 251 yp~y~-~G~gYvlS~~~v~~l~~~~--~~~~~----~~~~EDv~iG~~l~~-~gV~~~~~~~~~~ 307 (329)
| .|+ +|+||+||+.++++|.... ..... .-..||+.+|.|+.. +||+.++.+.|++
T Consensus 144 ~-~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs 207 (252)
T PF02434_consen 144 F-WFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHS 207 (252)
T ss_dssp ---EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---
T ss_pred e-EeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcc
Confidence 2 455 5789999999999995421 11122 234899999999999 8999999999986
No 8
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.72 E-value=3.7e-17 Score=158.51 Aligned_cols=173 Identities=24% Similarity=0.333 Sum_probs=133.7
Q ss_pred CCCCCCeeEEEEEeCCCCCHHHH-HHHHHHhccCCccchhhhhccCCcEEEEEe---ccCCCHHHHHHHHHHHhhCCCEE
Q 020201 88 NIKRHKVMGFVGIQTGFGSGGRR-RSLRMTWMPSDHQGLQQLEEATGLAFRFII---GRTNDQSKMAELRKEVAEYDDFI 163 (329)
Q Consensus 88 ~~~~~~~~lli~V~S~~~~~~rR-~~IR~TW~~~~~~~l~~l~~~~~i~~~Fvv---G~~~~~~~~~~l~~E~~~~~DiI 163 (329)
.....+.+++++|+|++.+..-| +.+-+||++.++ +..|+- ++... .+ ..|
T Consensus 85 ~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~------------~~~f~s~~~s~~~~------------~f-~~v 139 (364)
T KOG2246|consen 85 LWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD------------KGIFFSPTLSKDDS------------RF-PTV 139 (364)
T ss_pred hccCCCceEEEEEEecCcCceeehhhhhcccccccC------------cceecCccCCCCCC------------cC-cee
Confidence 35578899999999999876655 799999999985 223443 32221 11 234
Q ss_pred EeccccccCCchhHHHHHHHHHhh--cCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCCCCccc
Q 020201 164 LLDIEEEYSKLPYKTLAFFKAAYA--LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYE 241 (329)
Q Consensus 164 ~~d~~D~y~nlt~Ktl~~l~w~~~--~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~~Kwyv 241 (329)
..+..|+|+++..||..+++++++ ..+++|++|+|||||+.++||..+|.+.++++++|+|+.... +.
T Consensus 140 ~~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~----------~~ 209 (364)
T KOG2246|consen 140 YYNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKS----------YF 209 (364)
T ss_pred eccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccc----------cc
Confidence 788999999999999999999986 468999999999999999999999999999999999985321 11
Q ss_pred cccccCCCCCCCCCcCCceeecHHHHHHHHHhh----CcCCCCC--CcchHHHHHHHHhCCCceeeCC
Q 020201 242 PQSYLLGKEYFLHAYGPLYALSADVVVSLVALK----NNSFRMF--SNEDVTIGSWMLAMNVNHEDNR 303 (329)
Q Consensus 242 s~~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~~----~~~~~~~--~~EDv~iG~~l~~~gV~~~~~~ 303 (329)
.+.|. -+|+||++|+.++..+++.. ..+.... ..||..||.||+.+||.+.|.+
T Consensus 210 ------~~~y~--~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~ 269 (364)
T KOG2246|consen 210 ------QNGYS--SGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDER 269 (364)
T ss_pred ------ccccc--cCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCch
Confidence 11221 36889999999999987632 1233333 4999999999999999988874
No 9
>PLN03153 hypothetical protein; Provisional
Probab=99.36 E-value=6.7e-11 Score=117.64 Aligned_cols=182 Identities=17% Similarity=0.245 Sum_probs=117.1
Q ss_pred CCeeEEEEEeCCCCCH-HHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCE--EEeccc
Q 020201 92 HKVMGFVGIQTGFGSG-GRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDF--ILLDIE 168 (329)
Q Consensus 92 ~~~~lli~V~S~~~~~-~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~Di--I~~d~~ 168 (329)
.--.++++|.+..+.. +|+..|+.+|.+... + .++|+.....+.. | -.++ +.+...
T Consensus 120 ~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~----------r-g~v~ld~~~~~~~-------~---~~~~P~i~is~d 178 (537)
T PLN03153 120 SLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM----------R-GHVWLEEQVSPEE-------G---DDSLPPIMVSED 178 (537)
T ss_pred ccccEEEEEEEchhhhhhhhhhhhhhcCcccc----------e-eEEEecccCCCCC-------C---cCCCCCEEeCCC
Confidence 3346889999888765 566999999997531 0 2455544332210 0 0111 222111
Q ss_pred cc---cCC---chhH--HHHHHHHHhh--cCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCCCC
Q 020201 169 EE---YSK---LPYK--TLAFFKAAYA--LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLK 238 (329)
Q Consensus 169 D~---y~n---lt~K--tl~~l~w~~~--~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~~K 238 (329)
.+ |.| .... +..+...+.. .++++|++++|||+|+.+++|++.|...+++++.|+|..... .+.+..
T Consensus 179 ~s~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~---~~qn~~ 255 (537)
T PLN03153 179 TSRFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSES---HSANSY 255 (537)
T ss_pred cccccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccc---cccccc
Confidence 11 222 2221 1123333333 489999999999999999999999999999999999975311 000000
Q ss_pred ccccccccCCCCCCCCC-cCCceeecHHHHHHHHHhhCcCCC---CCCcchHHHHHHHHhCCCceeeCCCcccC
Q 020201 239 WYEPQSYLLGKEYFLHA-YGPLYALSADVVVSLVALKNNSFR---MFSNEDVTIGSWMLAMNVNHEDNRELCQS 308 (329)
Q Consensus 239 wyvs~~~y~~~~yp~y~-~G~gYvlS~~~v~~l~~~~~~~~~---~~~~EDv~iG~~l~~~gV~~~~~~~~~~~ 308 (329)
+ .| .|+ +|+||+||+.+++.|.+....+.. ...-+|.-+|.|+..+||...+.++|+|-
T Consensus 256 f----------~~-~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~ 318 (537)
T PLN03153 256 F----------SH-NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQW 318 (537)
T ss_pred c----------cc-ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcccc
Confidence 0 01 234 689999999999998764222322 23568999999999999999999999983
No 10
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.00054 Score=68.35 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=103.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCCc
Q 020201 95 MGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKL 174 (329)
Q Consensus 95 ~lli~V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~nl 174 (329)
+++++|+|. + .---+|-+|-+.+-+ ++.|+.+.+.-. .|.-+++..-.|.--
T Consensus 27 rl~~aVmte--~-tlA~a~NrT~ahhvp------------rv~~F~~~~~i~-------------~~~a~~~~vs~~d~r 78 (681)
T KOG3708|consen 27 RLMAAVMTE--S-TLALAINRTLAHHVP------------RVHLFADSSRID-------------NDLAQLTNVSPYDLR 78 (681)
T ss_pred HHHHHHHHH--H-HHHHHHHHHHHhhcc------------eeEEeecccccc-------------ccHhhccccCccccC
Confidence 567888882 2 566788888887753 455666655321 122233333333333
Q ss_pred hhHH-HHHHHHHhh--cCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEecc-ccccccCCCCCccccccccCCCC
Q 020201 175 PYKT-LAFFKAAYA--LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMK-KGPVFTDPHLKWYEPQSYLLGKE 250 (329)
Q Consensus 175 t~Kt-l~~l~w~~~--~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~-~~pv~Rd~~~Kwyvs~~~y~~~~ 250 (329)
..|+ .+.++++.+ +.+++|++-+-||+|||...|++++....-+.++|+|.-. .+ ...
T Consensus 79 ~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~g------------------s~r 140 (681)
T KOG3708|consen 79 GQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAEDG------------------SGR 140 (681)
T ss_pred ccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhCc------------------cCc
Confidence 3444 455677776 4689999999999999999999999988888999999421 11 111
Q ss_pred CCCCCc-CCceeecHHHHHHHHHhhCcCCCC--CCcchHHHHHHHHh-CCCc
Q 020201 251 YFLHAY-GPLYALSADVVVSLVALKNNSFRM--FSNEDVTIGSWMLA-MNVN 298 (329)
Q Consensus 251 yp~y~~-G~gYvlS~~~v~~l~~~~~~~~~~--~~~EDv~iG~~l~~-~gV~ 298 (329)
|. |.||+||+.++.+|-..-..+... ..=+|+.+|.|+.. .||.
T Consensus 141 ----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~ 188 (681)
T KOG3708|consen 141 ----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVG 188 (681)
T ss_pred ----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCC
Confidence 74 789999999999997532233332 34567999999975 4664
No 11
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=96.59 E-value=0.085 Score=51.59 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=87.6
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHhhCCC--EEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHH
Q 020201 134 LAFRFIIGRTNDQSKMAELRKEVAEYDD--FILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLL 211 (329)
Q Consensus 134 i~~~FvvG~~~~~~~~~~l~~E~~~~~D--iI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~ 211 (329)
+.++++...++|+.. ..+++=.++|.+ +..+.-.+ -.....|.-+..+ +.+..+.++++.+|+|+.+.++.|...
T Consensus 71 ~EIivvdd~s~D~t~-~iv~~~~~~~p~~~i~~v~~~~-~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~l 147 (373)
T TIGR03472 71 FQMLFGVQDPDDPAL-AVVRRLRADFPDADIDLVIDAR-RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQV 147 (373)
T ss_pred eEEEEEeCCCCCcHH-HHHHHHHHhCCCCceEEEECCC-CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHH
Confidence 566776665554322 223322355665 42231111 1233357655544 345568999999999999999999988
Q ss_pred HhhcC-CCCCceEEeccccccccCC--------CCCccccccccC-CCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCC
Q 020201 212 LAKER-PHSQTYLGCMKKGPVFTDP--------HLKWYEPQSYLL-GKEYFLHAYGPLYALSADVVVSLVALKNNSFRMF 281 (329)
Q Consensus 212 L~~~~-~~~~~y~G~~~~~pv~Rd~--------~~Kwyvs~~~y~-~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~ 281 (329)
+.... ++-.+..|.....+. ... ..-++.|..... ...-+.+|.|..+++.+++.+.+-... . ....
T Consensus 148 v~~~~~~~v~~V~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~RR~~l~~iGGf~-~-~~~~ 224 (373)
T TIGR03472 148 VAPLADPDVGLVTCLYRGRPV-PGFWSRLGAMGINHNFLPSVMVARALGRARFCFGATMALRRATLEAIGGLA-A-LAHH 224 (373)
T ss_pred HHHhcCCCcceEeccccCCCC-CCHHHHHHHHHhhhhhhHHHHHHHhccCCccccChhhheeHHHHHHcCChH-H-hccc
Confidence 87753 222222221111110 000 000111110000 001134588999999999999986442 1 2223
Q ss_pred CcchHHHHHHHHhCCCcee
Q 020201 282 SNEDVTIGSWMLAMNVNHE 300 (329)
Q Consensus 282 ~~EDv~iG~~l~~~gV~~~ 300 (329)
-.||+.+|.-+.+.|-+-.
T Consensus 225 ~~ED~~l~~~i~~~G~~v~ 243 (373)
T TIGR03472 225 LADDYWLGELVRALGLRVV 243 (373)
T ss_pred chHHHHHHHHHHHcCCeEE
Confidence 3699999999998886543
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=96.41 E-value=0.046 Score=48.58 Aligned_cols=189 Identities=16% Similarity=0.066 Sum_probs=86.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCE--EEeccccccC
Q 020201 95 MGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDF--ILLDIEEEYS 172 (329)
Q Consensus 95 ~lli~V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~Di--I~~d~~D~y~ 172 (329)
.+.|+|.+.-+...-++.|+.--... ..++.++++...+.+ +..+.+++-.+.+.+. -.+....+.
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~----------~~~~~v~vvd~~~~~-~~~~~~~~~~~~~~~~~v~vi~~~~~~- 69 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQD----------YPRLEVVVVDDGSDD-ETAEILRALAARYPRVRVRVIRRPRNP- 69 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSH----------HHTEEEEEEEE-SSS--GCTTHHHHHHTTGG-GEEEEE----H-
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCC----------CCCeEEEEEECCCCh-HHHHHHHHHHHHcCCCceEEeecCCCC-
Confidence 35666666554444555555554321 123555555543333 3333444445556542 222222111
Q ss_pred CchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhc-CCCCCceEEeccccc----cc---cCCCCCcccccc
Q 020201 173 KLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKE-RPHSQTYLGCMKKGP----VF---TDPHLKWYEPQS 244 (329)
Q Consensus 173 nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~-~~~~~~y~G~~~~~p----v~---Rd~~~Kwyvs~~ 244 (329)
....|.- .++++.+..+.+|++.+|||+.+.++.|..++... .+.-....|.....+ .. +.....|+....
T Consensus 70 g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (228)
T PF13641_consen 70 GPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFR 148 (228)
T ss_dssp HHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-
T ss_pred CcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhh
Confidence 1123443 34555555679999999999999999988888776 333333333331101 00 000001111000
Q ss_pred ccCCCCC-CCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCceee
Q 020201 245 YLLGKEY-FLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHED 301 (329)
Q Consensus 245 ~y~~~~y-p~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~~~ 301 (329)
.. ...+ ..++.|++.++.+++++.+.... . ....||..++.-+.+.|.+..-
T Consensus 149 ~~-~~~~~~~~~~G~~~~~rr~~~~~~g~fd-~---~~~~eD~~l~~r~~~~G~~~~~ 201 (228)
T PF13641_consen 149 SG-RRALGVAFLSGSGMLFRRSALEEVGGFD-P---FILGEDFDLCLRLRAAGWRIVY 201 (228)
T ss_dssp TT--B----S-B--TEEEEEHHHHHHH-S---S---SSSSHHHHHHHHHHHTT--EEE
T ss_pred hh-hcccceeeccCcEEEEEHHHHHHhCCCC-C---CCcccHHHHHHHHHHCCCcEEE
Confidence 00 1111 14467999999999999986432 2 4456999999999988865433
No 13
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=96.29 E-value=0.016 Score=50.75 Aligned_cols=123 Identities=17% Similarity=0.134 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCC-CCCceEEeccccccccCCCCCc------ccc--cccc
Q 020201 176 YKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERP-HSQTYLGCMKKGPVFTDPHLKW------YEP--QSYL 246 (329)
Q Consensus 176 ~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~-~~~~y~G~~~~~pv~Rd~~~Kw------yvs--~~~y 246 (329)
.|+-...+......+.++++..|+|+.|+++-|..++..... .-.+..+. |..+...+-| +.. ...+
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~----~~~~~~~~~~~~l~~~~~~~~~~~~ 92 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGL----PRGVPARGFWSRLEAAFFNFLPGVL 92 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEec----ccccCCcCHHHHHHHHHHhHHHHHH
Confidence 566665555444468999999999999999999999887642 32222221 1111111111 010 0000
Q ss_pred CCCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCceeeCCC
Q 020201 247 LGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDNRE 304 (329)
Q Consensus 247 ~~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~~~~~~ 304 (329)
..-.-.+++.|+.+++.+++++.+--. ..+...--||..+|..+.+.|.+..-.+.
T Consensus 93 ~a~~~~~~~~G~~m~~rr~~L~~~GG~--~~l~~~ladD~~l~~~~~~~G~~v~~~~~ 148 (175)
T PF13506_consen 93 QALGGAPFAWGGSMAFRREALEEIGGF--EALADYLADDYALGRRLRARGYRVVLSPY 148 (175)
T ss_pred HHhcCCCceecceeeeEHHHHHHcccH--HHHhhhhhHHHHHHHHHHHCCCeEEEcch
Confidence 011235789999999999999988432 22334559999999999999988776664
No 14
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=96.19 E-value=0.098 Score=46.18 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=54.3
Q ss_pred EEEeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCEEE-----eccccccC
Q 020201 98 VGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFIL-----LDIEEEYS 172 (329)
Q Consensus 98 i~V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~-----~d~~D~y~ 172 (329)
|.|.|-+++.+||+.+.+..... ++.+.|+-|.....-...++..+ ++.-.. -.+.-+.-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~------------~~~~e~~~Avdg~~l~~~~~~~~---~~~~~~~~~~~~~lt~gEi 68 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL------------GINFEFFDAVDGRDLSEDELFRR---YDPELFKKRYGRPLTPGEI 68 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------------CCceEEEEeecccccchHHHHHH---hhhhhhhccccccCCcceE
Confidence 56777788899999998877654 34566777665432212111111 111100 01122222
Q ss_pred CchhHHHHHHHHHhhcCCcceEEEeCCceEEcHH
Q 020201 173 KLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPD 206 (329)
Q Consensus 173 nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~ 206 (329)
.=.+-.+..++.+.+ .+.++.+-..||+.++.+
T Consensus 69 GC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 69 GCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred eehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 224556666676665 367999999999999965
No 15
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=95.88 E-value=0.45 Score=41.56 Aligned_cols=135 Identities=22% Similarity=0.280 Sum_probs=81.4
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHhhCC--CEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHH
Q 020201 134 LAFRFIIGRTNDQSKMAELRKEVAEYD--DFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLL 211 (329)
Q Consensus 134 i~~~FvvG~~~~~~~~~~l~~E~~~~~--DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~ 211 (329)
+.+++|...+.++ ....+++-.+.+. ++.......+ .....|.- .++.+.+....+|++..|+|+.+.++.|..+
T Consensus 31 ~eiivVdd~s~d~-t~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l 107 (196)
T cd02520 31 YEILFCVQDEDDP-AIPVVRKLIAKYPNVDARLLIGGEK-VGINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLRRM 107 (196)
T ss_pred eEEEEEeCCCcch-HHHHHHHHHHHCCCCcEEEEecCCc-CCCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHHHH
Confidence 5667776666543 2333444445554 3322221111 12223433 3445555567899999999999999888888
Q ss_pred HhhcCCCCCceEEeccccccccCCCCCccccccccCCCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHH
Q 020201 212 LAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSW 291 (329)
Q Consensus 212 L~~~~~~~~~y~G~~~~~pv~Rd~~~Kwyvs~~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~ 291 (329)
+...... . +|.+.. + ++.|++.++.+++.+.+-... .......||..++.-
T Consensus 108 ~~~~~~~-~--~~~v~~----~--------------------~~~g~~~~~r~~~~~~~ggf~--~~~~~~~eD~~l~~r 158 (196)
T cd02520 108 VAPLMDP-G--VGLVTC----L--------------------CAFGKSMALRREVLDAIGGFE--AFADYLAEDYFLGKL 158 (196)
T ss_pred HHHhhCC-C--CCeEEe----e--------------------cccCceeeeEHHHHHhccChH--HHhHHHHHHHHHHHH
Confidence 8764211 1 122211 0 567999999999999885432 122234799999998
Q ss_pred HHhCCCcee
Q 020201 292 MLAMNVNHE 300 (329)
Q Consensus 292 l~~~gV~~~ 300 (329)
+.+.|.+-.
T Consensus 159 l~~~G~~i~ 167 (196)
T cd02520 159 IWRLGYRVV 167 (196)
T ss_pred HHHcCCeEE
Confidence 888885543
No 16
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=95.81 E-value=0.51 Score=46.33 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=83.6
Q ss_pred cEEEEEeccCCCHHHHHHHHHH-HhhCC---CEEEeccccccCCchhHHH---HHHHHHhh-cCCcceEEEeCCceEEcH
Q 020201 134 LAFRFIIGRTNDQSKMAELRKE-VAEYD---DFILLDIEEEYSKLPYKTL---AFFKAAYA-LYDSEFYVKADDDIYLRP 205 (329)
Q Consensus 134 i~~~FvvG~~~~~~~~~~l~~E-~~~~~---DiI~~d~~D~y~nlt~Ktl---~~l~w~~~-~~~~~fvlK~DDD~~Vn~ 205 (329)
..+++|-..+.|+. .++-++ .+++. .+..+...+.-.+-..|.. .+++.+.+ ..+.+|++.+|+|+.+.+
T Consensus 71 ~eIIVVDd~StD~T--~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p 148 (384)
T TIGR03469 71 LHVILVDDHSTDGT--ADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGP 148 (384)
T ss_pred eEEEEEeCCCCCcH--HHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCCh
Confidence 46666666555432 223233 23343 4555543332223335543 34555444 334899999999999999
Q ss_pred HHHHHHHhhcCC-CCCceEEeccccccccCCC--CCccccc------cccC------CCCCCCCCcCCceeecHHHHHHH
Q 020201 206 DRLSLLLAKERP-HSQTYLGCMKKGPVFTDPH--LKWYEPQ------SYLL------GKEYFLHAYGPLYALSADVVVSL 270 (329)
Q Consensus 206 ~~L~~~L~~~~~-~~~~y~G~~~~~pv~Rd~~--~Kwyvs~------~~y~------~~~yp~y~~G~gYvlS~~~v~~l 270 (329)
+.|.+.++.... ...+..|.... +... .+...+. ..++ .......+.|++.++++++.+++
T Consensus 149 ~~l~~lv~~~~~~~~~~vs~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~v 224 (384)
T TIGR03469 149 DNLARLVARARAEGLDLVSLMVRL----RCESFWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAGGCILIRREALERI 224 (384)
T ss_pred hHHHHHHHHHHhCCCCEEEecccc----cCCCHHHHHHHHHHHHHHHHhcchhhhcCCCccceeecceEEEEEHHHHHHc
Confidence 999888876432 22232232211 1000 0000000 0000 01112346799999999999998
Q ss_pred HHhhCcCCCCCCcchHHHHHHHHhCCC
Q 020201 271 VALKNNSFRMFSNEDVTIGSWMLAMNV 297 (329)
Q Consensus 271 ~~~~~~~~~~~~~EDv~iG~~l~~~gV 297 (329)
--.. . ......||+.++.-+++.|-
T Consensus 225 GGf~-~-~~~~~~ED~~L~~r~~~~G~ 249 (384)
T TIGR03469 225 GGIA-A-IRGALIDDCTLAAAVKRSGG 249 (384)
T ss_pred CCHH-H-HhhCcccHHHHHHHHHHcCC
Confidence 5432 1 12234899999999988773
No 17
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.09 E-value=1.2 Score=36.72 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=57.8
Q ss_pred hcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCc-eEEeccccccccCCCCCccccccccCCCCCCCCCcCCceeecHH
Q 020201 187 ALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQT-YLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLYALSAD 265 (329)
Q Consensus 187 ~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~-y~G~~~~~pv~Rd~~~Kwyvs~~~y~~~~yp~y~~G~gYvlS~~ 265 (329)
+..+.+|++..|||..+.++.+...+......+.. .++.. +.|++.+++++
T Consensus 71 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~ 122 (166)
T cd04186 71 REAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK----------------------------VSGAFLLVRRE 122 (166)
T ss_pred hhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc----------------------------CceeeEeeeHH
Confidence 33489999999999999999888888753322221 11211 67889999999
Q ss_pred HHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCceee
Q 020201 266 VVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHED 301 (329)
Q Consensus 266 ~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~~~ 301 (329)
+++.+.... .... ...||..+..-+...|.+-..
T Consensus 123 ~~~~~~~~~-~~~~-~~~eD~~~~~~~~~~g~~i~~ 156 (166)
T cd04186 123 VFEEVGGFD-EDFF-LYYEDVDLCLRARLAGYRVLY 156 (166)
T ss_pred HHHHcCCCC-hhhh-ccccHHHHHHHHHHcCCeEEE
Confidence 998874321 2221 267999998877777765443
No 18
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.04 E-value=1.3 Score=38.88 Aligned_cols=158 Identities=12% Similarity=0.070 Sum_probs=82.3
Q ss_pred cEEEEEeccCCCHHHHHHHH-HHHhhCCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHH
Q 020201 134 LAFRFIIGRTNDQSKMAELR-KEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLL 212 (329)
Q Consensus 134 i~~~FvvG~~~~~~~~~~l~-~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L 212 (329)
+.++.|-+.+.+. ....++ .....+..+..++..+. .| ..|. .++++..+....+|++.+|+|..+.++.|.+++
T Consensus 29 ~eiivvdd~s~d~-t~~~~~~~~~~~~~~v~~~~~~~~-~~-~g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~ 104 (229)
T cd04192 29 FEVILVDDHSTDG-TVQILEFAAAKPNFQLKILNNSRV-SI-SGKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLTFV 104 (229)
T ss_pred eEEEEEcCCCCcC-hHHHHHHHHhCCCcceEEeeccCc-cc-chhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHHHH
Confidence 4555555544332 223333 22222334555554441 22 2333 334555565688999999999999999888888
Q ss_pred hhcC-CCCCceEEecccccc---ccC-CCCCccccc---cccCCCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcc
Q 020201 213 AKER-PHSQTYLGCMKKGPV---FTD-PHLKWYEPQ---SYLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNE 284 (329)
Q Consensus 213 ~~~~-~~~~~y~G~~~~~pv---~Rd-~~~Kwyvs~---~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~E 284 (329)
.... .....+.|.....+. ... ..-.+.... .......++..+.|++.++.+++.+.+-.. ........|
T Consensus 105 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf--~~~~~~~~e 182 (229)
T cd04192 105 AFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGF--EGNDHIASG 182 (229)
T ss_pred HHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCC--ccccccccC
Confidence 7543 233344454321100 000 000000000 001122345566799999999999988543 112234567
Q ss_pred hHHHHHHHHhCCC
Q 020201 285 DVTIGSWMLAMNV 297 (329)
Q Consensus 285 Dv~iG~~l~~~gV 297 (329)
|..++.-+.+.|-
T Consensus 183 D~~~~~~~~~~g~ 195 (229)
T cd04192 183 DDELLLAKVASKY 195 (229)
T ss_pred CHHHHHHHHHhCC
Confidence 8777665544443
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=94.49 E-value=1.2 Score=43.82 Aligned_cols=149 Identities=14% Similarity=0.160 Sum_probs=83.9
Q ss_pred EEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCC
Q 020201 138 FIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERP 217 (329)
Q Consensus 138 FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~ 217 (329)
+|+....+++..+.+++..+++..+..++..++ . .|. .+++.+.+..+.+|++..|+|..+.++.|.+.++....
T Consensus 87 iVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n---~-Gka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 87 IAINDGSSDNTGEILDRLAAQIPRLRVIHLAEN---Q-GKA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred EEEECCCCccHHHHHHHHHHhCCcEEEEEcCCC---C-CHH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 444444333444445555666666766654433 1 343 34566666678999999999999999999888876532
Q ss_pred CCCceEEeccccccccCCCCCcccc--ccccCC---------C--CCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcc
Q 020201 218 HSQTYLGCMKKGPVFTDPHLKWYEP--QSYLLG---------K--EYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNE 284 (329)
Q Consensus 218 ~~~~y~G~~~~~pv~Rd~~~Kwyvs--~~~y~~---------~--~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~E 284 (329)
++. +|.+...+..++..+ +... ..+|.. . ..+...+|.+.++.+++++.+-... ...-.|
T Consensus 162 ~~~--v~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~----~~~~~E 234 (420)
T PRK11204 162 NPR--VGAVTGNPRIRNRST-LLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS----TDMITE 234 (420)
T ss_pred CCC--eEEEECCceeccchh-HHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC----CCcccc
Confidence 222 232222121122110 1000 000100 0 1122346888999999998874321 123479
Q ss_pred hHHHHHHHHhCCCc
Q 020201 285 DVTIGSWMLAMNVN 298 (329)
Q Consensus 285 Dv~iG~~l~~~gV~ 298 (329)
|+-++.-+.+.|.+
T Consensus 235 D~~l~~rl~~~G~~ 248 (420)
T PRK11204 235 DIDISWKLQLRGWD 248 (420)
T ss_pred hHHHHHHHHHcCCe
Confidence 99999988888754
No 20
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=94.46 E-value=2.6 Score=39.51 Aligned_cols=115 Identities=13% Similarity=0.126 Sum_probs=65.6
Q ss_pred HHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCC-ceEEecc---c-cccccCC------------CCCccccc
Q 020201 181 FFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQ-TYLGCMK---K-GPVFTDP------------HLKWYEPQ 243 (329)
Q Consensus 181 ~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~-~y~G~~~---~-~pv~Rd~------------~~Kwyvs~ 243 (329)
+.+.+.+....+|++..|+|+.+.++-|..++.....++. +..|.+. . ....... ...|....
T Consensus 74 a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T cd02510 74 ARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLP 153 (299)
T ss_pred HHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCC
Confidence 3444555567899999999999998888888876432222 2222221 0 0000000 00111100
Q ss_pred cc-----cC-CCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCC
Q 020201 244 SY-----LL-GKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMN 296 (329)
Q Consensus 244 ~~-----y~-~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~g 296 (329)
.. .+ ....-+++.|++.++++++...+-.. ...+.....||+-+..=+...|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgf-De~~~~~~~ED~Dl~~R~~~~G 211 (299)
T cd02510 154 EEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGY-DEGMDIWGGENLELSFKVWQCG 211 (299)
T ss_pred HHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCC-CCcccccCchhHHHHHHHHHcC
Confidence 00 01 11223567799999999999998544 2334444579999987666666
No 21
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=94.18 E-value=0.46 Score=39.27 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=68.6
Q ss_pred EEEeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCC-EEEeccccccCCchh
Q 020201 98 VGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDD-FILLDIEEEYSKLPY 176 (329)
Q Consensus 98 i~V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~D-iI~~d~~D~y~nlt~ 176 (329)
|.|.+-+...+||+.+++..... ++.+.|+-|..........+......+.. ...-+..-+.-.-.+
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~------------~~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL------------GLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------------CCCeEEEeccccccCCHHHHHHHhHHHhhhhcCCCCChhhHHHHH
Confidence 45677788889999999855433 45667777765432222222222111000 000111222222234
Q ss_pred HHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCCCCccccccccCCCCCCCCCc
Q 020201 177 KTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAY 256 (329)
Q Consensus 177 Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~~Kwyvs~~~y~~~~yp~y~~ 256 (329)
..+..++-+.+ .+.++.+-..||+.+..+ +
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-------------------------------------------------~ 99 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-------------------------------------------------G 99 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC-------------------------------------------------C
Confidence 45555555555 366899999999999876 4
Q ss_pred CCceeecHHHHHHHHHhh
Q 020201 257 GPLYALSADVVVSLVALK 274 (329)
Q Consensus 257 G~gYvlS~~~v~~l~~~~ 274 (329)
..+|++|++.+++|++..
T Consensus 100 ~~~Y~vs~~~A~~ll~~~ 117 (128)
T cd06532 100 TAGYLVSRKGAKKLLAAL 117 (128)
T ss_pred ceEEEeCHHHHHHHHHhC
Confidence 568999999999999853
No 22
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=93.65 E-value=0.89 Score=37.12 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=65.5
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHh
Q 020201 134 LAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLA 213 (329)
Q Consensus 134 i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~ 213 (329)
..++++-..+ +++..+.+++-.+....+..+...++. + .-..+..+.+....+|++.+|||.++.++.|..+++
T Consensus 28 ~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~-g----~~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~ 101 (169)
T PF00535_consen 28 FEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENL-G----FSAARNRGIKHAKGEYILFLDDDDIISPDWLEELVE 101 (169)
T ss_dssp EEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCS-H----HHHHHHHHHHH--SSEEEEEETTEEE-TTHHHHHHH
T ss_pred EEEEEecccc-ccccccccccccccccccccccccccc-c----ccccccccccccceeEEEEeCCCceEcHHHHHHHHH
Confidence 3455554444 333344444444435566666655443 2 233334444445667999999999999987777776
Q ss_pred hcCC-CCCceEEecc----ccccccCCCC--Ccccc-c--cccCCCCCCCCCcCCceeecHHHHHHH
Q 020201 214 KERP-HSQTYLGCMK----KGPVFTDPHL--KWYEP-Q--SYLLGKEYFLHAYGPLYALSADVVVSL 270 (329)
Q Consensus 214 ~~~~-~~~~y~G~~~----~~pv~Rd~~~--Kwyvs-~--~~y~~~~yp~y~~G~gYvlS~~~v~~l 270 (329)
.... .....+|... .......... .+... . .......--.++.|++.++++++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 102 ALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 6432 3334555531 1111010100 00100 0 001112234567788999999998865
No 23
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=93.64 E-value=2.7 Score=37.34 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=82.6
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHhhCC-CEEEeccccccCCchhHHHHHHHHHhhc--CCcceEEEeCCceEEcHHHHH
Q 020201 133 GLAFRFIIGRTNDQSKMAELRKEVAEYD-DFILLDIEEEYSKLPYKTLAFFKAAYAL--YDSEFYVKADDDIYLRPDRLS 209 (329)
Q Consensus 133 ~i~~~FvvG~~~~~~~~~~l~~E~~~~~-DiI~~d~~D~y~nlt~Ktl~~l~w~~~~--~~~~fvlK~DDD~~Vn~~~L~ 209 (329)
.+.+++|-+.+.++.....+++=.++++ ++..+... .|.-.| -.++.++.+. .+.+|++..|+|+.+.++.|.
T Consensus 28 ~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~---~~~G~~-~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~ 103 (236)
T cd06435 28 NFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE---PLPGAK-AGALNYALERTAPDAEIIAVIDADYQVEPDWLK 103 (236)
T ss_pred CcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC---CCCCCc-hHHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHH
Confidence 3566666655555433222322122332 45443322 222233 3346666653 247999999999999999999
Q ss_pred HHHhhcCCCCCceEEeccccccccCCCCCccccc------ccc----CC-CC-CCCCCcCCceeecHHHHHHHHHhhCcC
Q 020201 210 LLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQ------SYL----LG-KE-YFLHAYGPLYALSADVVVSLVALKNNS 277 (329)
Q Consensus 210 ~~L~~~~~~~~~y~G~~~~~pv~Rd~~~Kwyvs~------~~y----~~-~~-yp~y~~G~gYvlS~~~v~~l~~~~~~~ 277 (329)
.++.... ++. +|.+......++....++... ..+ +. .. --.++.|++.++++++++.+-... .
T Consensus 104 ~l~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf~-~- 178 (236)
T cd06435 104 RLVPIFD-DPR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGGWD-E- 178 (236)
T ss_pred HHHHHhc-CCC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHHHhCCCC-C-
Confidence 9887753 222 232211000111111111100 000 00 00 012467888999999999884332 2
Q ss_pred CCCCCcchHHHHHHHHhCCCce
Q 020201 278 FRMFSNEDVTIGSWMLAMNVNH 299 (329)
Q Consensus 278 ~~~~~~EDv~iG~~l~~~gV~~ 299 (329)
.+..||+-++.=+.+.|.+.
T Consensus 179 --~~~~eD~dl~~r~~~~G~~~ 198 (236)
T cd06435 179 --WCITEDSELGLRMHEAGYIG 198 (236)
T ss_pred --ccccchHHHHHHHHHCCcEE
Confidence 23489999998888877553
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=93.57 E-value=0.45 Score=42.09 Aligned_cols=113 Identities=12% Similarity=0.003 Sum_probs=65.5
Q ss_pred HHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCc--eEEecc---ccc---cccCC--CCCccccccccC-CCC
Q 020201 182 FKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQT--YLGCMK---KGP---VFTDP--HLKWYEPQSYLL-GKE 250 (329)
Q Consensus 182 l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~--y~G~~~---~~p---v~Rd~--~~Kwyvs~~~y~-~~~ 250 (329)
+..+.+..+.+|++.+|+|.++.++.|..++.....++.+ ..|... ... ..+.. ....+....... ...
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRW 155 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444454588999999999999999998888765432332 222211 000 00000 000000000000 011
Q ss_pred CCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCc
Q 020201 251 YFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 251 yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~ 298 (329)
...++.|++.++++++++.+.... .....||..++.-+.+.|.+
T Consensus 156 ~~~~~~g~~~~~r~~~~~~ig~~~----~~~~~eD~~l~~r~~~~g~~ 199 (234)
T cd06421 156 GAAFCCGSGAVVRREALDEIGGFP----TDSVTEDLATSLRLHAKGWR 199 (234)
T ss_pred CCceecCceeeEeHHHHHHhCCCC----ccceeccHHHHHHHHHcCce
Confidence 245677999999999999875432 22447999999988888754
No 25
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=93.47 E-value=3 Score=41.74 Aligned_cols=181 Identities=13% Similarity=0.104 Sum_probs=97.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCC
Q 020201 94 VMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSK 173 (329)
Q Consensus 94 ~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~n 173 (329)
+.+-|+|.+.-+...-++.|+.- .++. ..+..++.+...+ +++..+.+++..+++..+......+ |
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sl-l~q~---------yp~~eIivVdDgs-~D~t~~~~~~~~~~~~~v~vv~~~~---n 140 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAA-LAQT---------YTNIEVIAINDGS-SDDTAQVLDALLAEDPRLRVIHLAH---N 140 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHH-HcCC---------CCCeEEEEEECCC-CccHHHHHHHHHHhCCCEEEEEeCC---C
Confidence 34666666654443334444332 2221 1134544444433 3334444555556666665444332 2
Q ss_pred chhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCC---CCccccccccCC--
Q 020201 174 LPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPH---LKWYEPQSYLLG-- 248 (329)
Q Consensus 174 lt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~---~Kwyvs~~~y~~-- 248 (329)
. .|. .+++.+.+..+.+|++..|+|..+.++.|.+.++....+++ .|.+...|..++.. ++.... +|..
T Consensus 141 ~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~--e~~~~~ 214 (444)
T PRK14583 141 Q-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVG--EFSSII 214 (444)
T ss_pred C-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCC--eEEEEccceecCCCcchhhHHHH--HHHHHH
Confidence 1 243 45666666678999999999999999999888876432222 23332222222211 111100 1100
Q ss_pred -------CCC--CCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCc
Q 020201 249 -------KEY--FLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 249 -------~~y--p~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~ 298 (329)
..| +..++|.+.++.+++++.+--.. +..-.||.-+|.-+...|-+
T Consensus 215 ~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~----~~~i~ED~dl~~rl~~~G~~ 269 (444)
T PRK14583 215 GLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS----PDMITEDIDISWKLQLKHWS 269 (444)
T ss_pred HHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCC----CCcccccHHHHHHHHHcCCe
Confidence 111 22346888999999998874322 11236999999988888754
No 26
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.41 E-value=5.3 Score=35.36 Aligned_cols=159 Identities=11% Similarity=-0.004 Sum_probs=83.1
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHH
Q 020201 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLL 212 (329)
Q Consensus 133 ~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L 212 (329)
...++.+-+.+.+ +....++...+++..+....-.+. . + -.+++.+.+....+|++.+|||..+.++.|.+.+
T Consensus 31 ~~evivvd~~s~d-~~~~~~~~~~~~~~~v~~i~~~~~--~---~-~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 31 LIEIIVVDGGSTD-GTREIVQEYAAKDPRIRLIDNPKR--I---Q-SAGLNIGIRNSRGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred ccEEEEEeCCCCc-cHHHHHHHHHhcCCeEEEEeCCCC--C---c-hHHHHHHHHHhCCCEEEEECCCccCCHHHHHHHH
Confidence 4566666555443 233334444444444444432211 1 1 2356666665689999999999999988888888
Q ss_pred hhcCC-CCCceEEecc---cccccc----CCCCCcccccc--ccCCCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCC
Q 020201 213 AKERP-HSQTYLGCMK---KGPVFT----DPHLKWYEPQS--YLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFS 282 (329)
Q Consensus 213 ~~~~~-~~~~y~G~~~---~~pv~R----d~~~Kwyvs~~--~y~~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~ 282 (329)
..... ......|... ..+..+ .....+..... .......-.++.|++.++++++..++.-.. . ....
T Consensus 104 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~--~~~~ 180 (249)
T cd02525 104 EALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGFD-E--SLVR 180 (249)
T ss_pred HHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCCC-c--ccCc
Confidence 65432 2233334431 111100 00000000000 000111012456778899999988874321 2 2345
Q ss_pred cchHHHHHHHHhCCCceee
Q 020201 283 NEDVTIGSWMLAMNVNHED 301 (329)
Q Consensus 283 ~EDv~iG~~l~~~gV~~~~ 301 (329)
.||..++.-+.+.|.+...
T Consensus 181 ~eD~~l~~r~~~~G~~~~~ 199 (249)
T cd02525 181 NEDAELNYRLRKAGYKIWL 199 (249)
T ss_pred cchhHHHHHHHHcCcEEEE
Confidence 7999999888877755443
No 27
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.17 E-value=1.5 Score=37.90 Aligned_cols=155 Identities=12% Similarity=0.100 Sum_probs=80.3
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHhhCC-CEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHH
Q 020201 133 GLAFRFIIGRTNDQSKMAELRKEVAEYD-DFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLL 211 (329)
Q Consensus 133 ~i~~~FvvG~~~~~~~~~~l~~E~~~~~-DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~ 211 (329)
.+.+++|-..+.+ +....+++-.+++. .+......++ .. + ...+.........+|++..|+|..+.++.|..+
T Consensus 27 ~~eiiVvddgS~d-~t~~~~~~~~~~~~~~~~~~~~~~~-~G---~-~~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~ 100 (214)
T cd04196 27 NDELIISDDGSTD-GTVEIIKEYIDKDPFIIILIRNGKN-LG---V-ARNFESLLQAADGDYVFFCDQDDIWLPDKLERL 100 (214)
T ss_pred CeEEEEEeCCCCC-CcHHHHHHHHhcCCceEEEEeCCCC-cc---H-HHHHHHHHHhCCCCEEEEECCCcccChhHHHHH
Confidence 4566666554443 23333444344454 2333333322 12 1 233333455568999999999999999888888
Q ss_pred Hhh-cC-CCCCceEEecc----ccccccCCC--CCccccccccCCCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCc
Q 020201 212 LAK-ER-PHSQTYLGCMK----KGPVFTDPH--LKWYEPQSYLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSN 283 (329)
Q Consensus 212 L~~-~~-~~~~~y~G~~~----~~pv~Rd~~--~Kwyvs~~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~ 283 (329)
+.. .. +...++.|... .+....... .....+...+.......+..|++.++.+++++.+.... ... ...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~--~~~ 177 (214)
T cd04196 101 LKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELLELALPFP-DAD--VIM 177 (214)
T ss_pred HHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCceeeEEHHHHHhhcccc-ccc--ccc
Confidence 876 22 23233334321 111100000 00000000011111234567889999999999885432 211 568
Q ss_pred chHHHHHHHHhCC
Q 020201 284 EDVTIGSWMLAMN 296 (329)
Q Consensus 284 EDv~iG~~l~~~g 296 (329)
||..+...+.+.|
T Consensus 178 ~D~~~~~~~~~~~ 190 (214)
T cd04196 178 HDWWLALLASAFG 190 (214)
T ss_pred chHHHHHHHHHcC
Confidence 9998887776654
No 28
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=92.90 E-value=2.6 Score=35.60 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=61.6
Q ss_pred HHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEe-ccccccccCCCCCccccccccCCCCCCCCCcCCc
Q 020201 181 FFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGC-MKKGPVFTDPHLKWYEPQSYLLGKEYFLHAYGPL 259 (329)
Q Consensus 181 ~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~-~~~~pv~Rd~~~Kwyvs~~~y~~~~yp~y~~G~g 259 (329)
.++.+.+....+|++..|+|..+.++.|...++...+.. ...|. ....+. .. .....|++
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~~-~v~g~~~~~~~~----~~--------------~~~~~~~~ 130 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPGV-FLSGSRVLLNEK----LT--------------ERGIRGCN 130 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCCc-EEecceeecccc----cc--------------eeEeccce
Confidence 345555556889999999999999988888887653222 22232 111100 00 02345777
Q ss_pred eeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCc
Q 020201 260 YALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 260 YvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~ 298 (329)
+.+.++.+..+.... ........||+-++.=+.+.|+.
T Consensus 131 ~~~~r~~~~~~ggf~-~~~~~~~~eD~~l~~r~~~~g~~ 168 (182)
T cd06420 131 MSFWKKDLLAVNGFD-EEFTGWGGEDSELVARLLNSGIK 168 (182)
T ss_pred EEEEHHHHHHhCCCC-cccccCCcchHHHHHHHHHcCCc
Confidence 888888887654432 33333458999999888888843
No 29
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=92.71 E-value=2.4 Score=37.56 Aligned_cols=137 Identities=11% Similarity=0.009 Sum_probs=69.8
Q ss_pred CCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHH--hh-cCCCCCc-eEEe-cc--cccc
Q 020201 159 YDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLL--AK-ERPHSQT-YLGC-MK--KGPV 231 (329)
Q Consensus 159 ~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L--~~-~~~~~~~-y~G~-~~--~~pv 231 (329)
...+..+...++ .....=.-.+++++.. .+++|++..|+|+.+.++.|..++ .. ......+ .+|. +. ....
T Consensus 46 ~~~i~~i~~~~n-~G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (237)
T cd02526 46 SEKIELIHLGEN-LGIAKALNIGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGE 123 (237)
T ss_pred CCcEEEEECCCc-eehHHhhhHHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCe
Confidence 345555544433 1222333334454443 268999999999999999998885 22 2222222 2222 11 1000
Q ss_pred c--cCCCCCccccccccCCC--CCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCce
Q 020201 232 F--TDPHLKWYEPQSYLLGK--EYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNH 299 (329)
Q Consensus 232 ~--Rd~~~Kwyvs~~~y~~~--~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~ 299 (329)
. ......+.......... .-..++.|++.++++++.+.+-... ... ....||+.++.-+...|.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd-~~~-~~~~eD~d~~~r~~~~G~~~ 193 (237)
T cd02526 124 NSPGVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFD-EDL-FIDYVDTEWCLRARSKGYKI 193 (237)
T ss_pred eccceeccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCC-HHH-cCccchHHHHHHHHHcCCcE
Confidence 0 00000000000000011 1123455778899999999875331 211 24579999998888887543
No 30
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=92.70 E-value=3 Score=36.93 Aligned_cols=153 Identities=14% Similarity=0.233 Sum_probs=80.7
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHh
Q 020201 134 LAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLA 213 (329)
Q Consensus 134 i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~ 213 (329)
..+++|...+.++ ....+ ++...+..+.+..- ++ ..|.-+ +....+..+.+|++.+|+|+.+.++.|...+.
T Consensus 29 ~eiivvdd~s~d~-~~~~l-~~~~~~~~~~v~~~-~~----~g~~~a-~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~ 100 (235)
T cd06434 29 LEIIVVTDGDDEP-YLSIL-SQTVKYGGIFVITV-PH----PGKRRA-LAEGIRHVTTDIVVLLDSDTVWPPNALPEMLK 100 (235)
T ss_pred CEEEEEeCCCChH-HHHHH-HhhccCCcEEEEec-CC----CChHHH-HHHHHHHhCCCEEEEECCCceeChhHHHHHHH
Confidence 4555665544432 23333 34555666655542 11 234432 33344445899999999999999999999888
Q ss_pred hcCCCCCceEEeccccccccCC-CCCccc------cc-------cccCCCCCCCCCcCCceeecHHHHHHHHHhhC----
Q 020201 214 KERPHSQTYLGCMKKGPVFTDP-HLKWYE------PQ-------SYLLGKEYFLHAYGPLYALSADVVVSLVALKN---- 275 (329)
Q Consensus 214 ~~~~~~~~y~G~~~~~pv~Rd~-~~Kwyv------s~-------~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~~~---- 275 (329)
... ++.+ |.+.......+. ...|.. .. ...... -...+.|.+.++.+++++...-...
T Consensus 101 ~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~rr~~l~~~~~~~~~~~~ 176 (235)
T cd06434 101 PFE-DPKV--GGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDG-GVPCLSGRTAAYRTEILKDFLFLEEFTNE 176 (235)
T ss_pred hcc-CCCE--eEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCC-CEEEccCcHHHHHHHHHhhhhhHHHhhhh
Confidence 764 3222 222110000111 011100 00 000001 1123468888888888877542110
Q ss_pred --cCCCCCCcchHHHHHHHHhCCCc
Q 020201 276 --NSFRMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 276 --~~~~~~~~EDv~iG~~l~~~gV~ 298 (329)
...+....||..++.-+.+.|.+
T Consensus 177 ~~~~~~~~~~eD~~l~~~~~~~g~~ 201 (235)
T cd06434 177 TFMGRRLNAGDDRFLTRYVLSHGYK 201 (235)
T ss_pred hhcCCCCCcCchHHHHHHHHHCCCe
Confidence 11234567999999888887764
No 31
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=92.64 E-value=6 Score=33.95 Aligned_cols=116 Identities=17% Similarity=0.085 Sum_probs=64.0
Q ss_pred HHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcC--CCCCceEEeccccccccCCCCCccccc--cccCCCC-CCCC
Q 020201 180 AFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKER--PHSQTYLGCMKKGPVFTDPHLKWYEPQ--SYLLGKE-YFLH 254 (329)
Q Consensus 180 ~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~--~~~~~y~G~~~~~pv~Rd~~~Kwyvs~--~~y~~~~-yp~y 254 (329)
.+++.+.+....+|++..|+|..+.++.|...++... +...+..+.... .+..+..+.+. ..+.... +..-
T Consensus 73 ~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (202)
T cd04184 73 AATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDK----IDEGGKRSEPFFKPDWSPDLLLSQN 148 (202)
T ss_pred HHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHh----ccCCCCEeccccCCCCCHHHhhhcC
Confidence 3455555556789999999999999999988887652 222233232210 00011111100 0011111 1111
Q ss_pred CcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCceeeC
Q 020201 255 AYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHEDN 302 (329)
Q Consensus 255 ~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~~~~ 302 (329)
+.|++-+++++++..+.... . .....||.-++.-+.+.|.+....
T Consensus 149 ~~~~~~~~~r~~~~~iggf~-~--~~~~~eD~~l~~rl~~~g~~~~~~ 193 (202)
T cd04184 149 YIGHLLVYRRSLVRQVGGFR-E--GFEGAQDYDLVLRVSEHTDRIAHI 193 (202)
T ss_pred CccceEeEEHHHHHHhCCCC-c--CcccchhHHHHHHHHhccceEEEc
Confidence 23555678999988875332 2 234679999998777777654443
No 32
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.15 E-value=2 Score=37.18 Aligned_cols=95 Identities=20% Similarity=0.115 Sum_probs=59.7
Q ss_pred HHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcC-CCCCceEEeccccccccCCCCCccccccccCCCCCCCCCc
Q 020201 178 TLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKER-PHSQTYLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAY 256 (329)
Q Consensus 178 tl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~-~~~~~y~G~~~~~pv~Rd~~~Kwyvs~~~y~~~~yp~y~~ 256 (329)
.-.+++++. ..+.+|++..|||..+.++.|..++.... +...+..|.. .+..+ .
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~------~~~~~------------------~ 122 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLV------LDPDG------------------S 122 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEeccee------EcCCC------------------c
Confidence 344566665 45789999999999999888877776653 2222222221 11111 2
Q ss_pred CCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCce
Q 020201 257 GPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNH 299 (329)
Q Consensus 257 G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~ 299 (329)
+.+.++.+++++.+--. .... ....||+.++.-+...|-..
T Consensus 123 ~~~~~~~~~~~~~~g~~-~~~~-~~~~eD~~~~~r~~~~G~~i 163 (202)
T cd04185 123 FVGVLISRRVVEKIGLP-DKEF-FIWGDDTEYTLRASKAGPGI 163 (202)
T ss_pred eEEEEEeHHHHHHhCCC-Chhh-hccchHHHHHHHHHHcCCcE
Confidence 35678999999877321 1111 24579999999888887543
No 33
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=92.02 E-value=1 Score=38.37 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=72.5
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHH
Q 020201 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLL 212 (329)
Q Consensus 133 ~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L 212 (329)
.+.++.+-+.+.++ ....++...+++..+..++...+. .|. .+++.+.+....+|++.+|+|....++.|..++
T Consensus 29 ~~eiivvdd~s~d~-t~~~~~~~~~~~~~i~~i~~~~n~----G~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 29 DYEIIFVDDGSTDR-TLEILRELAARDPRVKVIRLSRNF----GQQ-AALLAGLDHARGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred CeEEEEEeCCCCcc-HHHHHHHHHhhCCCEEEEEecCCC----CcH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 34555565555443 223334444455556555544332 222 344445554567999999999999988888888
Q ss_pred hhcCCCCCceEEeccc--cccccCCCCCccccccccCCCCCCCCCcCCceeecHHHHHHHHHh
Q 020201 213 AKERPHSQTYLGCMKK--GPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLYALSADVVVSLVAL 273 (329)
Q Consensus 213 ~~~~~~~~~y~G~~~~--~pv~Rd~~~Kwyvs~~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~ 273 (329)
........+..|.... .+..+.-..+.+...........-+...|+..++++++++.+...
T Consensus 103 ~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~ 165 (181)
T cd04187 103 AKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLLL 165 (181)
T ss_pred HHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHhc
Confidence 7654444555665421 110000000000000001112223456788899999999998754
No 34
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=91.95 E-value=6.5 Score=35.32 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=68.3
Q ss_pred HHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCC-CCc-eEE-eccccccccCCCCCcccc--ccc----cC---
Q 020201 180 AFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPH-SQT-YLG-CMKKGPVFTDPHLKWYEP--QSY----LL--- 247 (329)
Q Consensus 180 ~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~-~~~-y~G-~~~~~pv~Rd~~~Kwyvs--~~~----y~--- 247 (329)
.++++..+....+|++.+|+|+.+.++.|.+.+...... ..+ .+| .+...........+.+.. ... .+
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666678999999999999999999988775422 232 222 221100000000010000 000 00
Q ss_pred CCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCceee
Q 020201 248 GKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHED 301 (329)
Q Consensus 248 ~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~~~ 301 (329)
....+..+.|++.++++++++.+.... . ....||..++.=+...|.+...
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~-~---~~~~eD~~l~~rl~~~G~r~~~ 203 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWD-P---FNVTEDADLGLRLARAGYRTGV 203 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCC-c---ccchhhHHHHHHHHHCCceEEE
Confidence 112334467888999999999875432 1 2347999999887777755443
No 35
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.58 E-value=4.9 Score=34.02 Aligned_cols=117 Identities=12% Similarity=-0.043 Sum_probs=67.3
Q ss_pred HHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhc--CCCCCceEEeccc-cccccCCCCCccccccccCCCCCCCCC
Q 020201 179 LAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKE--RPHSQTYLGCMKK-GPVFTDPHLKWYEPQSYLLGKEYFLHA 255 (329)
Q Consensus 179 l~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~--~~~~~~y~G~~~~-~pv~Rd~~~Kwyvs~~~y~~~~yp~y~ 255 (329)
-.+++.+.+..+.+|++.+|+|..+.++.+...+... .+...+..|.... .+.... ...+..............+.
T Consensus 64 ~~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 142 (202)
T cd06433 64 YDAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRV-IGRRRPPPFLDKFLLYGMPI 142 (202)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCc-ccCCCCcchhhhHHhhcCcc
Confidence 3445556665678999999999999999999988433 2333445555321 000000 00000000111111223456
Q ss_pred cCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCce
Q 020201 256 YGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNH 299 (329)
Q Consensus 256 ~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~ 299 (329)
.|++.++++++.+.+.... .. ....||..+..-+...|...
T Consensus 143 ~~~~~~~~~~~~~~~~~f~-~~--~~~~~D~~~~~r~~~~g~~~ 183 (202)
T cd06433 143 CHQATFFRRSLFEKYGGFD-ES--YRIAADYDLLLRLLLAGKIF 183 (202)
T ss_pred cCcceEEEHHHHHHhCCCc-hh--hCchhhHHHHHHHHHcCCce
Confidence 6788899999998884321 22 23468998887777777554
No 36
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=91.39 E-value=3.5 Score=38.27 Aligned_cols=191 Identities=13% Similarity=0.079 Sum_probs=98.7
Q ss_pred EEEeCCCCCHH-HHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHH----hhCCCEEEeccccccC
Q 020201 98 VGIQTGFGSGG-RRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEV----AEYDDFILLDIEEEYS 172 (329)
Q Consensus 98 i~V~S~~~~~~-rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~----~~~~DiI~~d~~D~y~ 172 (329)
|+|.+.-...+ -.+.++......... . -...+.+ |++..+.+++.....+++. +++..-+.+-+.....
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~---~--~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~ 76 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKT---G--LADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRE 76 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhc---C--CcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 56666655554 566677665421000 0 0113455 8887776654322111111 2233322222222223
Q ss_pred CchhHHHHHHHHHhhc-CCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCCCCccc----------
Q 020201 173 KLPYKTLAFFKAAYAL-YDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYE---------- 241 (329)
Q Consensus 173 nlt~Ktl~~l~w~~~~-~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~~Kwyv---------- 241 (329)
|.-.|+-..-...... .+.+|++-.|.|+.+.++.|.+.+.....++. +|-+..-....+..+-|.-
T Consensus 77 ~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~~~ 154 (254)
T cd04191 77 NTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANRLYG 154 (254)
T ss_pred CCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHHHHH
Confidence 4345665554444432 57899999999999999999999887532222 2333210011111110000
Q ss_pred -----cccccCCCCCCCCCcCCceeecHHHHHHHHHhh----CcCC-CCCCcchHHHHHHHHhCCCc
Q 020201 242 -----PQSYLLGKEYFLHAYGPLYALSADVVVSLVALK----NNSF-RMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 242 -----s~~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~~----~~~~-~~~~~EDv~iG~~l~~~gV~ 298 (329)
....|.. --.+|.|...++.++++..+.... ..-. ...-.||..+|..+...|-+
T Consensus 155 ~~~~~~~~~~~~--~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~r 219 (254)
T cd04191 155 PVFGRGLAAWQG--GEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWE 219 (254)
T ss_pred HHHHHHHHHhcC--CccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCE
Confidence 0000111 123566999999999988763221 0111 22358999999999888844
No 37
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=90.46 E-value=2.8 Score=41.12 Aligned_cols=183 Identities=11% Similarity=-0.031 Sum_probs=103.9
Q ss_pred eeEEEEEeCCCCCH-HHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccC
Q 020201 94 VMGFVGIQTGFGSG-GRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYS 172 (329)
Q Consensus 94 ~~lli~V~S~~~~~-~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~ 172 (329)
+.+-|+|.+--++. -..+.++..=...- .+..++.+...+ +++..+.+++-.+++++.+.+... .
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~dy----------p~~evivv~d~~-~d~~~~~~~~~~~~~~~~~~~~~~---~ 119 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQDY----------PRYEVIVVDDGS-TDETYEILEELGAEYGPNFRVIYP---E 119 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCCC----------CCceEEEECCCC-ChhHHHHHHHHHhhcCcceEEEec---c
Confidence 44556666655544 33344444433321 124555555433 333444455556666533333311 1
Q ss_pred CchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCc-eEEeccccccccCCC--CCcccccc--cc-
Q 020201 173 KLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQT-YLGCMKKGPVFTDPH--LKWYEPQS--YL- 246 (329)
Q Consensus 173 nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~-y~G~~~~~pv~Rd~~--~Kwyvs~~--~y- 246 (329)
+-...-..++.++.+..+.++++..|.|+.+.++.|.+.+......... ..|.. ..++.. ..+..... +|
T Consensus 120 ~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~----~~~~~~~~~~~l~~~~~~~~~ 195 (439)
T COG1215 120 KKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTP----RIRNRPDPSNLLGRIQAIEYL 195 (439)
T ss_pred ccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCc----eeeecCChhhhcchhcchhhh
Confidence 1123335667777776679999999999999999999999876533222 23322 111110 11110000 00
Q ss_pred ---------C-CCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCc
Q 020201 247 ---------L-GKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 247 ---------~-~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~ 298 (329)
. .......+.|++.++-+++++.+... ....--||..+|..+...|-+
T Consensus 196 ~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~~----~~~~i~ED~~lt~~l~~~G~~ 253 (439)
T COG1215 196 SAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVGGW----LEDTITEDADLTLRLHLRGYR 253 (439)
T ss_pred hhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCCC----CCCceeccHHHHHHHHHCCCe
Confidence 0 12357788999999999999988532 233447999999999987754
No 38
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=90.45 E-value=11 Score=32.44 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=76.7
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHh
Q 020201 134 LAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLA 213 (329)
Q Consensus 134 i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~ 213 (329)
..+++|.-.+.++.....+++-.+++. +..+-..++. .+ -.+++.+....+.+|++..|+|.++.++.|...+.
T Consensus 30 ~eiiivdd~ss~d~t~~~~~~~~~~~~-i~~i~~~~n~----G~-~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~ 103 (201)
T cd04195 30 DEVVLVKDGPVTQSLNEVLEEFKRKLP-LKVVPLEKNR----GL-GKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLD 103 (201)
T ss_pred cEEEEEECCCCchhHHHHHHHHHhcCC-eEEEEcCccc----cH-HHHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHH
Confidence 344444333323333333444444555 5444333321 12 22345555556899999999999999999988887
Q ss_pred hcCC--CCCceEEeccc--cccccCCCCCccccc-----cccCCCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcc
Q 020201 214 KERP--HSQTYLGCMKK--GPVFTDPHLKWYEPQ-----SYLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNE 284 (329)
Q Consensus 214 ~~~~--~~~~y~G~~~~--~pv~Rd~~~Kwyvs~-----~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~E 284 (329)
.... ...++.|.+.. ... +....+. .+. ..+....- + ..|++.++.++++..+.... .....|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~rr~~~~~~g~~~----~~~~~e 175 (201)
T cd04195 104 FIEKNPEIDIVGGGVLEFDSDG-NDIGKRR-LPTSHDDILKFARRRS-P-FNHPTVMFRKSKVLAVGGYQ----DLPLVE 175 (201)
T ss_pred HHHhCCCeEEEcccEEEECCCC-Ceecccc-CCCCHHHHHHHhccCC-C-CCChHHhhhHHHHHHcCCcC----CCCCch
Confidence 6432 22344444321 000 0000000 010 01111111 1 24566788888777653321 226799
Q ss_pred hHHHHHHHHhCCCc
Q 020201 285 DVTIGSWMLAMNVN 298 (329)
Q Consensus 285 Dv~iG~~l~~~gV~ 298 (329)
|..+..-+...|.+
T Consensus 176 D~~~~~r~~~~g~~ 189 (201)
T cd04195 176 DYALWARMLANGAR 189 (201)
T ss_pred HHHHHHHHHHcCCc
Confidence 99999887766643
No 39
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=89.87 E-value=21 Score=38.26 Aligned_cols=119 Identities=13% Similarity=0.002 Sum_probs=69.9
Q ss_pred CchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEec-------cccccccCCCCCcccccc-
Q 020201 173 KLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCM-------KKGPVFTDPHLKWYEPQS- 244 (329)
Q Consensus 173 nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~-------~~~pv~Rd~~~Kwyvs~~- 244 (329)
|...|.- .++.+.+..+.+|++..|.|..+.++.|.+.+.....++.+ |.+ +..|+.++-......+.+
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v--~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~ 288 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKL--FLVQTPHFFVSPDPIERNLGTFRRMPNEN 288 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCE--EEEeCCeeccCCCHHhhhhHHHHHhhhHH
Confidence 3345643 35666666788999999999999999998888765323332 222 111221110000000100
Q ss_pred -c-c----CCC--CCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCc
Q 020201 245 -Y-L----LGK--EYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 245 -~-y----~~~--~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~ 298 (329)
. | ++. .-..++.|.+.++.+++++.+-... . ..-.||..+|.-+.+.|-+
T Consensus 289 ~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~-~---~~vtED~~l~~rL~~~G~~ 346 (713)
T TIGR03030 289 ELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIA-G---ETVTEDAETALKLHRRGWN 346 (713)
T ss_pred HHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCC-C---CCcCcHHHHHHHHHHcCCe
Confidence 0 0 110 0124567899999999999874332 1 1237999999999888865
No 40
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=89.77 E-value=11 Score=33.45 Aligned_cols=112 Identities=10% Similarity=0.022 Sum_probs=61.7
Q ss_pred HHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCCCCcccccc--------------cc
Q 020201 181 FFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQS--------------YL 246 (329)
Q Consensus 181 ~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~~Kwyvs~~--------------~y 246 (329)
.++...+..+.+|++.+|.|+.+.++.|...+.... ++. +|.+.......+....|..... .+
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 455566666899999999999999999988554432 222 2332110000111112211000 00
Q ss_pred CCCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcee
Q 020201 247 LGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHE 300 (329)
Q Consensus 247 ~~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~~ 300 (329)
....+ ..+.|++-++.+++++.+-... . ....||+.++.-+...|.+..
T Consensus 155 ~~~~~-~~~~g~~~~~rr~~~~~vgg~~-~---~~~~ED~~l~~rl~~~G~~~~ 203 (232)
T cd06437 155 STGLF-FNFNGTAGVWRKECIEDAGGWN-H---DTLTEDLDLSYRAQLKGWKFV 203 (232)
T ss_pred hcCCe-EEeccchhhhhHHHHHHhCCCC-C---CcchhhHHHHHHHHHCCCeEE
Confidence 01111 1234666678888888774332 1 234799999988887775433
No 41
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=89.68 E-value=2.9 Score=33.98 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=51.5
Q ss_pred HHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCC--CceEEeccc---c-ccccCCC-CCccccc-cccC---
Q 020201 179 LAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHS--QTYLGCMKK---G-PVFTDPH-LKWYEPQ-SYLL--- 247 (329)
Q Consensus 179 l~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~--~~y~G~~~~---~-pv~Rd~~-~Kwyvs~-~~y~--- 247 (329)
-..++++.+..+.+|++.+|+|..+.++.|..++....... ....|.... . ....... .++.... ....
T Consensus 67 ~~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (180)
T cd06423 67 AGALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQS 146 (180)
T ss_pred hHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhh
Confidence 34455555556899999999999999888888755433222 222333211 0 0000000 0000000 0001
Q ss_pred CCCCCCCCcCCceeecHHHHHHHHH
Q 020201 248 GKEYFLHAYGPLYALSADVVVSLVA 272 (329)
Q Consensus 248 ~~~yp~y~~G~gYvlS~~~v~~l~~ 272 (329)
.......+.|.+++++++++..+-.
T Consensus 147 ~~~~~~~~~g~~~~~~~~~~~~~gg 171 (180)
T cd06423 147 ALGGVLVLSGAFGAFRREALREVGG 171 (180)
T ss_pred eecceeecCchHHHHHHHHHHHhCC
Confidence 1233466789999999999998753
No 42
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=89.43 E-value=1.9 Score=36.55 Aligned_cols=130 Identities=14% Similarity=0.133 Sum_probs=69.3
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHh
Q 020201 134 LAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLA 213 (329)
Q Consensus 134 i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~ 213 (329)
..++.+-..+.+ .....++...+++..+..+...++.. | -.++....+....+|++..|+|..+.++.|..++.
T Consensus 29 ~eiivvd~~s~d-~~~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 29 YEIIVVDDGSTD-GTAEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred EEEEEEcCCCCC-ChHHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 344444433333 33334444455566665555554432 1 24445555545569999999999999999999888
Q ss_pred h-cCCCCCceEEecc--c----cccccCCCCCccc--cccccCCCCCCCCCcCCceeecHHHHHHHH
Q 020201 214 K-ERPHSQTYLGCMK--K----GPVFTDPHLKWYE--PQSYLLGKEYFLHAYGPLYALSADVVVSLV 271 (329)
Q Consensus 214 ~-~~~~~~~y~G~~~--~----~pv~Rd~~~Kwyv--s~~~y~~~~yp~y~~G~gYvlS~~~v~~l~ 271 (329)
. ......+..|... . .+..+.- ..+.. ..... ...-.....|+.+++.+++++.+.
T Consensus 103 ~~~~~~~~~v~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 103 KLLEGGADVVIGSRFVRGGGAGMPLLRRL-GSRLFNFLIRLL-LGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHhccCCcEEEEEeecCCCcccchHHHHH-HHHHHHHHHHHH-cCCCCcCCCCceeeeHHHHHHHHH
Confidence 6 3444455556531 1 1111100 00000 00000 111123356778899999999984
No 43
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=89.03 E-value=0.53 Score=43.72 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=42.3
Q ss_pred cCCceeecHHHHHHHHHhhCcC---CCCCCcchHHHHHHHHhCCCceeeCCCccc
Q 020201 256 YGPLYALSADVVVSLVALKNNS---FRMFSNEDVTIGSWMLAMNVNHEDNRELCQ 307 (329)
Q Consensus 256 ~G~gYvlS~~~v~~l~~~~~~~---~~~~~~EDv~iG~~l~~~gV~~~~~~~~~~ 307 (329)
+|+|+++|..+++.|.+.-..+ .+.+.--|--+..|+..+||.....++|+|
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ 66 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQ 66 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCcee
Confidence 6899999999999998742222 233445799999999999999999999988
No 44
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=88.85 E-value=4.8 Score=34.44 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=51.6
Q ss_pred HHHHHHhh-cCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCCCCccccc--ccc----------
Q 020201 180 AFFKAAYA-LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQ--SYL---------- 246 (329)
Q Consensus 180 ~~l~w~~~-~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~~Kwyvs~--~~y---------- 246 (329)
.+++++.. -.+.+|++.+|.|+.+.++.|..++........+..|+... +++...|.-.. ..|
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNS----KNPDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEee----eCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 34444432 24689999999999999999888887764444555565421 11222221100 000
Q ss_pred -CCCCCCCCCcCCceeecHHHHHH
Q 020201 247 -LGKEYFLHAYGPLYALSADVVVS 269 (329)
Q Consensus 247 -~~~~yp~y~~G~gYvlS~~~v~~ 269 (329)
..-.-+.++.|.++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 00122345789999999999988
No 45
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=87.88 E-value=24 Score=33.20 Aligned_cols=135 Identities=15% Similarity=0.122 Sum_probs=77.2
Q ss_pred CCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCC-CceEEec-c--cccc---
Q 020201 159 YDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHS-QTYLGCM-K--KGPV--- 231 (329)
Q Consensus 159 ~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~-~~y~G~~-~--~~pv--- 231 (329)
+.++..+...++.-- ..=.-.+++.+..... +|++-.++|+.+.++.|.++++...... ....|.. . ..+.
T Consensus 55 ~~~v~~i~~~~NlG~-agg~n~g~~~a~~~~~-~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLGF-AGGFNRGIKYALAKGD-DYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCccc-hhhhhHHHHHHhcCCC-cEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 678877665555211 1111145566655222 2999999999999999999998754322 2233332 1 1100
Q ss_pred ccC-----CCCCc-cccccccCC-----CCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCC
Q 020201 232 FTD-----PHLKW-YEPQSYLLG-----KEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNV 297 (329)
Q Consensus 232 ~Rd-----~~~Kw-yvs~~~y~~-----~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV 297 (329)
.+. ....| ..+..+.+. .....++.|++.++++++++++--. ..--.+..||+-++.=+++.|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~--de~~F~y~eD~D~~~R~~~~G~ 207 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGF--DERFFIYYEDVDLCLRARKAGY 207 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCC--CcccceeehHHHHHHHHHHcCC
Confidence 010 01112 111111111 1122257899999999999998543 2323458999999988888884
No 46
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=87.76 E-value=20 Score=32.03 Aligned_cols=184 Identities=17% Similarity=0.073 Sum_probs=89.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCC
Q 020201 94 VMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSK 173 (329)
Q Consensus 94 ~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~n 173 (329)
..+-|+|.+.-+...-.+.|+.-..+... ...+.++++...+.+ .....+++..++ .+......++
T Consensus 29 ~~isVvip~~n~~~~l~~~l~si~~q~~~--------~~~~eiivvdd~s~d-~t~~~~~~~~~~--~v~~i~~~~~--- 94 (251)
T cd06439 29 PTVTIIIPAYNEEAVIEAKLENLLALDYP--------RDRLEIIVVSDGSTD-GTAEIAREYADK--GVKLLRFPER--- 94 (251)
T ss_pred CEEEEEEecCCcHHHHHHHHHHHHhCcCC--------CCcEEEEEEECCCCc-cHHHHHHHHhhC--cEEEEEcCCC---
Confidence 34666666654433345556555543311 112455555444433 222233322222 3433332222
Q ss_pred chhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcC-CCCCceEEeccc-cccccCCCCCccccc----cccC
Q 020201 174 LPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKER-PHSQTYLGCMKK-GPVFTDPHLKWYEPQ----SYLL 247 (329)
Q Consensus 174 lt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~-~~~~~y~G~~~~-~pv~Rd~~~Kwyvs~----~~y~ 247 (329)
..|. ..++...+....+|++.+|+|+.+.++-|.+++.... +...+..|.... .+.........+... ..+.
T Consensus 95 -~g~~-~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (251)
T cd06439 95 -RGKA-AALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAE 172 (251)
T ss_pred -CChH-HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHH
Confidence 1233 3345555545679999999999999888888887753 222333444321 110000000100000 0000
Q ss_pred -CCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCcee
Q 020201 248 -GKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNHE 300 (329)
Q Consensus 248 -~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~~ 300 (329)
....+..+.|+++.+.+++.+ .. ......||..++..+...|.+..
T Consensus 173 ~~~~~~~~~~g~~~~~rr~~~~---~~----~~~~~~eD~~l~~~~~~~G~~~~ 219 (251)
T cd06439 173 SRLGSTVGANGAIYAIRRELFR---PL----PADTINDDFVLPLRIARQGYRVV 219 (251)
T ss_pred HhcCCeeeecchHHHhHHHHhc---CC----CcccchhHHHHHHHHHHcCCeEE
Confidence 011233456777777777666 11 11234799999998888885543
No 47
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=86.88 E-value=10 Score=34.95 Aligned_cols=135 Identities=11% Similarity=0.033 Sum_probs=69.1
Q ss_pred hhCCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCC-Cc-eEEe-c-cc-c--
Q 020201 157 AEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHS-QT-YLGC-M-KK-G-- 229 (329)
Q Consensus 157 ~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~-~~-y~G~-~-~~-~-- 229 (329)
+.+.++..+...++. ....=.-.+++++.+ .+.+|++..|||+.+.++.|..++....... .+ .+|. + .. .
T Consensus 42 ~~~~~i~~i~~~~N~-G~a~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (281)
T TIGR01556 42 LRGQKIALIHLGDNQ-GIAGAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSR 119 (281)
T ss_pred ccCCCeEEEECCCCc-chHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcc
Confidence 344566555544331 222222235666654 3789999999999999888888776543221 21 2222 1 10 0
Q ss_pred --ccccCCCCCccccccccCC--C-CCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCC
Q 020201 230 --PVFTDPHLKWYEPQSYLLG--K-EYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNV 297 (329)
Q Consensus 230 --pv~Rd~~~Kwyvs~~~y~~--~-~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV 297 (329)
|..+. ..+..+...... . .-..++.++|.++++++++.+--.. ..+ .+..||+-+..=+.+.|.
T Consensus 120 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sg~li~~~~~~~iG~fd-e~~-fi~~~D~e~~~R~~~~G~ 188 (281)
T TIGR01556 120 RLPAIHL--DGLLLRQISLDGLTTPQKTSFLISSGCLITREVYQRLGMMD-EEL-FIDHVDTEWSLRAQNYGI 188 (281)
T ss_pred cCCceee--cccceeeecccccCCceeccEEEcCcceeeHHHHHHhCCcc-Hhh-cccchHHHHHHHHHHCCC
Confidence 00000 001000000000 0 1112444566789999999884321 222 345799988776666674
No 48
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=86.80 E-value=19 Score=39.39 Aligned_cols=116 Identities=13% Similarity=0.001 Sum_probs=68.0
Q ss_pred hHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEec-------cccccccCCCCCcccccc-c--
Q 020201 176 YKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCM-------KKGPVFTDPHLKWYEPQS-Y-- 245 (329)
Q Consensus 176 ~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~-------~~~pv~Rd~~~Kwyvs~~-~-- 245 (329)
.|.- .++.+.+..+.+|++..|.|..+.++-|...+.....+++ +|.+ +..|..|+-...-..+.+ +
T Consensus 326 gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~--VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~f 402 (852)
T PRK11498 326 AKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKK--LAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLF 402 (852)
T ss_pred chHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCC--eEEEEcceeccCCchHHHhhHHHhhcccchhHH
Confidence 4443 4566666678999999999999999998887754322222 2222 112221210000000000 0
Q ss_pred c----CCC--CCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCc
Q 020201 246 L----LGK--EYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 246 y----~~~--~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~ 298 (329)
| ++. .--.++.|++.++.+++++.+-... . . ...||..++.-+...|-+
T Consensus 403 y~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd-~--~-titED~dlslRL~~~Gyr 457 (852)
T PRK11498 403 YGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIA-V--E-TVTEDAHTSLRLHRRGYT 457 (852)
T ss_pred HHHHHhHHHhhcccccccceeeeEHHHHHHhcCCC-C--C-ccCccHHHHHHHHHcCCE
Confidence 0 000 0124577899999999999986442 2 1 236999999999988854
No 49
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=85.52 E-value=24 Score=35.23 Aligned_cols=111 Identities=10% Similarity=0.085 Sum_probs=62.0
Q ss_pred HHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCc--eEEeccccccccCCCCC---cccccc---ccC----
Q 020201 180 AFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQT--YLGCMKKGPVFTDPHLK---WYEPQS---YLL---- 247 (329)
Q Consensus 180 ~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~--y~G~~~~~pv~Rd~~~K---wyvs~~---~y~---- 247 (329)
.+++++.+..+.+|++..|+|..+.++.|.+.+.....++.+ ..|.+...+-..+.... +..... +|.
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 445666666788999999999999999999988765333322 23443211100000000 111110 010
Q ss_pred -------CCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHh
Q 020201 248 -------GKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLA 294 (329)
Q Consensus 248 -------~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~ 294 (329)
...-+..++|++.++.++++.+..... . . .-.||.-++.=+..
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~-~--~-~i~ED~~l~~rl~~ 250 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYN-S--E-TVGEDTDMTFQIRE 250 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC-C--C-CcCccHHHHHHHHH
Confidence 001122357888889999888763321 1 1 23899999875543
No 50
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=84.63 E-value=3.2 Score=35.80 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=61.0
Q ss_pred eEEEeCCceEEcHHHHHHHHhhcCCCCCc--eEEeccccccccCCCCCcccccc---------ccCCCCCCCCCcCCcee
Q 020201 193 FYVKADDDIYLRPDRLSLLLAKERPHSQT--YLGCMKKGPVFTDPHLKWYEPQS---------YLLGKEYFLHAYGPLYA 261 (329)
Q Consensus 193 fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~--y~G~~~~~pv~Rd~~~Kwyvs~~---------~y~~~~yp~y~~G~gYv 261 (329)
|++-+|+|+.+.++-|.+.+.... ++.. ..|.+...+. .+.-.++..... .......+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRNR-GSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecCC-CChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999999988887655 2222 2222211000 000011111110 00112346678899999
Q ss_pred ecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCce
Q 020201 262 LSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNH 299 (329)
Q Consensus 262 lS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~ 299 (329)
+.+++++.+... . -.....||..++.=+.+.|-+.
T Consensus 79 ~r~~~l~~vg~~--~-~~~~~~ED~~l~~~l~~~G~~~ 113 (193)
T PF13632_consen 79 FRREALREVGGF--D-DPFSIGEDMDLGFRLRRAGYRI 113 (193)
T ss_pred eeHHHHHHhCcc--c-ccccccchHHHHHHHHHCCCEE
Confidence 999999988432 2 2345579999998888887543
No 51
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=84.15 E-value=31 Score=30.97 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=80.6
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHhhCCC--EEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHH
Q 020201 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDD--FILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSL 210 (329)
Q Consensus 133 ~i~~~FvvG~~~~~~~~~~l~~E~~~~~D--iI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~ 210 (329)
.+.+++|-+.+.|. ..+.+++-.++|++ +.......+ .+ | -.+++.+....+.+|++.+|+|..++++.|..
T Consensus 40 ~~eiivvDdgS~D~-t~~i~~~~~~~~~~~~v~~~~~~~n-~G---~-~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~ 113 (243)
T PLN02726 40 DFEIIVVDDGSPDG-TQDVVKQLQKVYGEDRILLRPRPGK-LG---L-GTAYIHGLKHASGDFVVIMDADLSHHPKYLPS 113 (243)
T ss_pred CeEEEEEeCCCCCC-HHHHHHHHHHhcCCCcEEEEecCCC-CC---H-HHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHH
Confidence 45666666655543 22333333445553 323222211 11 1 23444555555789999999999999999988
Q ss_pred HHhhcC-CCCCceEEecc-ccccccCCCCCc---cccc------cccCCCCCCCCCcCCceeecHHHHHHHHHhhCcCCC
Q 020201 211 LLAKER-PHSQTYLGCMK-KGPVFTDPHLKW---YEPQ------SYLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFR 279 (329)
Q Consensus 211 ~L~~~~-~~~~~y~G~~~-~~pv~Rd~~~Kw---yvs~------~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~ 279 (329)
++.... ....+..|... ..... ....| ..+. ....+.. -....|++.++++++++.+.... . ..
T Consensus 114 l~~~~~~~~~~~v~g~r~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~~~~-~~d~~g~~~~~rr~~~~~i~~~~-~-~~ 188 (243)
T PLN02726 114 FIKKQRETGADIVTGTRYVKGGGV--HGWDLRRKLTSRGANVLAQTLLWPG-VSDLTGSFRLYKRSALEDLVSSV-V-SK 188 (243)
T ss_pred HHHHHHhcCCcEEEEccccCCCCc--CCccHHHHHHHHHHHHHHHHHhCCC-CCcCCCcccceeHHHHHHHHhhc-c-CC
Confidence 887642 23345556431 10000 00001 0000 0001111 12356888899999999996431 1 12
Q ss_pred CCCcchHHHHHHHHhCCCceee
Q 020201 280 MFSNEDVTIGSWMLAMNVNHED 301 (329)
Q Consensus 280 ~~~~EDv~iG~~l~~~gV~~~~ 301 (329)
.+ .+|.-+...+...|.+...
T Consensus 189 ~~-~~~~el~~~~~~~g~~i~~ 209 (243)
T PLN02726 189 GY-VFQMEIIVRASRKGYRIEE 209 (243)
T ss_pred Cc-EEehHHHHHHHHcCCcEEE
Confidence 22 3466676666667755443
No 52
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=80.16 E-value=44 Score=34.40 Aligned_cols=188 Identities=15% Similarity=0.072 Sum_probs=93.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCC
Q 020201 94 VMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSK 173 (329)
Q Consensus 94 ~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~n 173 (329)
..+-|+|...-+..--.+.|+..=.+... .+..+ ||+-..++++....+++=.++|..+..+-.. ..+
T Consensus 66 p~vaIlIPA~NE~~vI~~~l~s~L~~ldY---------~~~eI-iVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~--~~g 133 (504)
T PRK14716 66 KRIAIFVPAWREADVIGRMLEHNLATLDY---------ENYRI-FVGTYPNDPATLREVDRLAARYPRVHLVIVP--HDG 133 (504)
T ss_pred CceEEEEeccCchhHHHHHHHHHHHcCCC---------CCeEE-EEEECCCChhHHHHHHHHHHHCCCeEEEEeC--CCC
Confidence 34666666654443345555544222211 12333 3332333333333333335567765322222 122
Q ss_pred chhHHHHHHHHHhh-------c--CCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCCCCccccc-
Q 020201 174 LPYKTLAFFKAAYA-------L--YDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQ- 243 (329)
Q Consensus 174 lt~Ktl~~l~w~~~-------~--~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~~Kwyvs~- 243 (329)
.+.|.- .++|+.+ + .++++++-.|-|..+.++.|..+-.. .++..+.-..+. +..+ +.+.| +..
T Consensus 134 p~~Ka~-aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~-~~~~~~VQ~pv~--~~~~-~~~~~-~ag~ 207 (504)
T PRK14716 134 PTSKAD-CLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYL-LPRHDFVQLPVF--SLPR-DWGEW-VAGT 207 (504)
T ss_pred CCCHHH-HHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhh-cCCCCEEeccee--ccCC-chhHH-HHHH
Confidence 345654 4444432 1 24699999999999999998764332 222221110010 0001 11111 100
Q ss_pred --cccCC---------C--CCCCCCcCCceeecHHHHHHHHHhhCcC-C-CCCCcchHHHHHHHHhCCCce
Q 020201 244 --SYLLG---------K--EYFLHAYGPLYALSADVVVSLVALKNNS-F-RMFSNEDVTIGSWMLAMNVNH 299 (329)
Q Consensus 244 --~~y~~---------~--~yp~y~~G~gYvlS~~~v~~l~~~~~~~-~-~~~~~EDv~iG~~l~~~gV~~ 299 (329)
.+|.. . .-+..+.|.++++++++++++....-.. . ...--||.-+|.-+...|.+.
T Consensus 208 y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv 278 (504)
T PRK14716 208 YMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQ 278 (504)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEE
Confidence 01110 0 1233478999999999999985421111 2 234589999999998888653
No 53
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=78.91 E-value=43 Score=29.06 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=49.7
Q ss_pred HHHHhhcCCcceEEEeCCceEEcHHHHHHHHhh-cCCCCCceEEecc-ccccccCCCCCc--cccc--ccc---CCCCCC
Q 020201 182 FKAAYALYDSEFYVKADDDIYLRPDRLSLLLAK-ERPHSQTYLGCMK-KGPVFTDPHLKW--YEPQ--SYL---LGKEYF 252 (329)
Q Consensus 182 l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~-~~~~~~~y~G~~~-~~pv~Rd~~~Kw--yvs~--~~y---~~~~yp 252 (329)
++...+....+|++.+|+|..+.++.|..++.. ..++..+..|... .... ......+ +.+. ..+ ....-.
T Consensus 70 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (224)
T cd06442 70 YIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGG-VEGWGLKRKLISRGANLLARLLLGRKV 148 (224)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCc-cCCCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 333334345699999999999999988888886 3444455555431 1111 0000000 0000 000 001112
Q ss_pred CCCcCCceeecHHHHHHHH
Q 020201 253 LHAYGPLYALSADVVVSLV 271 (329)
Q Consensus 253 ~y~~G~gYvlS~~~v~~l~ 271 (329)
..+.|++.++++++++.+.
T Consensus 149 ~~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 149 SDPTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCCCccchhhHHHHHHHh
Confidence 4567888899999999986
No 54
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=76.35 E-value=67 Score=34.43 Aligned_cols=198 Identities=13% Similarity=0.055 Sum_probs=104.8
Q ss_pred CCCCeeEEEEEeCCCCCHHH-HHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHH----HHHHHHhhCC---C
Q 020201 90 KRHKVMGFVGIQTGFGSGGR-RRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMA----ELRKEVAEYD---D 161 (329)
Q Consensus 90 ~~~~~~lli~V~S~~~~~~r-R~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~----~l~~E~~~~~---D 161 (329)
.....++.|+|.+.-+..++ +..|+.++.+-... ....++. +|++..+.+++... .+++=.++|+ .
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~-----~~~~~~e-~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~ 193 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAAT-----GHGAHFD-FFILSDTRDPDIAAAEEAAWLELRAELGGEGR 193 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhc-----CCCCCEE-EEEEECCCChhHHHHHHHHHHHHHHhcCCCCc
Confidence 34445677777776665543 46777777543210 0012344 48888777654321 1111133343 3
Q ss_pred EEEeccccccCCchhHHHHHHHHHhh-cCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCCCCcc
Q 020201 162 FILLDIEEEYSKLPYKTLAFFKAAYA-LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWY 240 (329)
Q Consensus 162 iI~~d~~D~y~nlt~Ktl~~l~w~~~-~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~~Kwy 240 (329)
+....-. +|.-.|.-..-.+... -.+++|++-.|-|+.+..+.|.+++.....+++ +|-+...|...+..+ ++
T Consensus 194 i~yr~R~---~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~s-lf 267 (691)
T PRK05454 194 IFYRRRR---RNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADT-LF 267 (691)
T ss_pred EEEEECC---cCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCC-HH
Confidence 4443322 3444577666566555 357899999999999999999999976532322 354432222122211 11
Q ss_pred ccccccCCCCC--------------CCCCcCCceeecHHHHHHHHHhh--CcCC---CCCCcchHHHHHHHHhCCCce
Q 020201 241 EPQSYLLGKEY--------------FLHAYGPLYALSADVVVSLVALK--NNSF---RMFSNEDVTIGSWMLAMNVNH 299 (329)
Q Consensus 241 vs~~~y~~~~y--------------p~y~~G~gYvlS~~~v~~l~~~~--~~~~---~~~~~EDv~iG~~l~~~gV~~ 299 (329)
.-..++....| --...|...++.+++....-... ...- ...--||...|..++..|-+-
T Consensus 268 aR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV 345 (691)
T PRK05454 268 ARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGV 345 (691)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEE
Confidence 10000000000 00123666788888776653211 0111 124578999999999988543
No 55
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=75.97 E-value=51 Score=30.68 Aligned_cols=160 Identities=13% Similarity=0.150 Sum_probs=86.8
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHhhCCCE-EE-eccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHH
Q 020201 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDDF-IL-LDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSL 210 (329)
Q Consensus 133 ~i~~~FvvG~~~~~~~~~~l~~E~~~~~Di-I~-~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~ 210 (329)
.+.++++-+.+.. .....|.+-.+.++-+ ++ .+.....-+ .-.+.+-+.+....++++..|.|+++.++.+.+
T Consensus 34 ~~eiIvvd~~s~~-~~~~~l~~~~~~~~~~~~i~~~~~~~~f~----~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~ 108 (281)
T PF10111_consen 34 DFEIIVVDDGSSD-EFDEELKKLCEKNGFIRYIRHEDNGEPFS----RAKARNIGAKYARGDYLIFLDADCIPSPDFIEK 108 (281)
T ss_pred CEEEEEEECCCch-hHHHHHHHHHhccCceEEEEcCCCCCCcC----HHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHH
Confidence 4555555444432 2345666666666665 32 222221122 123334444556899999999999999999999
Q ss_pred HHh---hcCC-CCCceEEec---c-cc--ccccCCCCCcccc--cc--ccCCCCC-CCCCcCCceeecHHHHHHHHHhhC
Q 020201 211 LLA---KERP-HSQTYLGCM---K-KG--PVFTDPHLKWYEP--QS--YLLGKEY-FLHAYGPLYALSADVVVSLVALKN 275 (329)
Q Consensus 211 ~L~---~~~~-~~~~y~G~~---~-~~--pv~Rd~~~Kwyvs--~~--~y~~~~y-p~y~~G~gYvlS~~~v~~l~~~~~ 275 (329)
.+. .... ...+.++.+ . .. .........|... .. ....+.+ .....|++.+++++.-..+... .
T Consensus 109 ~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGf-D 187 (281)
T PF10111_consen 109 LLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGF-D 187 (281)
T ss_pred HHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCC-C
Confidence 988 4322 223333322 1 11 0100000001000 00 0001111 1223468999999999988665 3
Q ss_pred cCCCCCCcchHHHHHHHHhCCCc
Q 020201 276 NSFRMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 276 ~~~~~~~~EDv~iG~~l~~~gV~ 298 (329)
+.+.....||.=++.=|.+.|..
T Consensus 188 E~f~G~G~ED~D~~~RL~~~~~~ 210 (281)
T PF10111_consen 188 ERFRGWGYEDIDFGYRLKKAGYK 210 (281)
T ss_pred ccccCCCcchHHHHHHHHHcCCc
Confidence 55666789999998767776643
No 56
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=75.72 E-value=42 Score=32.14 Aligned_cols=134 Identities=15% Similarity=0.149 Sum_probs=68.7
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHhhCCC-EEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHH
Q 020201 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDD-FILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLL 211 (329)
Q Consensus 133 ~i~~~FvvG~~~~~~~~~~l~~E~~~~~D-iI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~ 211 (329)
...+++|-..+.|.. .+.+++-.+++++ ++......++ .|. .+++...+..+.+|++.+|+|.-.+++.+.++
T Consensus 38 ~~EIIvVDDgS~D~T-~~il~~~~~~~~~~v~~i~~~~n~----G~~-~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 38 EYEILLIDDGSSDNS-AEMLVEAAQAPDSHIVAILLNRNY----GQH-SAIMAGFSHVTGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred CEEEEEEeCCCCCcH-HHHHHHHHhhcCCcEEEEEeCCCC----CHH-HHHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Confidence 356777776665532 2223332334444 4444333332 222 22333334457899999999999999999998
Q ss_pred HhhcCCCCCceEEecc--ccccccCCCCCccccc-cccCCCCCCCCCcCCceeecHHHHHHHHHh
Q 020201 212 LAKERPHSQTYLGCMK--KGPVFTDPHLKWYEPQ-SYLLGKEYFLHAYGPLYALSADVVVSLVAL 273 (329)
Q Consensus 212 L~~~~~~~~~y~G~~~--~~pv~Rd~~~Kwyvs~-~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~ 273 (329)
++......++..|... ..+..|.-.++.+.-. ....+..++.+..| .-++++++++.+...
T Consensus 112 ~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~g-fr~~~r~~~~~l~~~ 175 (325)
T PRK10714 112 VAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCM-LRAYRRHIVDAMLHC 175 (325)
T ss_pred HHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcC-eEEEcHHHHHHHHHC
Confidence 8875433344444432 1122121111111000 01123334443333 348999999998653
No 57
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=75.14 E-value=54 Score=28.32 Aligned_cols=106 Identities=14% Similarity=0.040 Sum_probs=59.4
Q ss_pred HHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEecc-----ccccccCCCCCccccccccCCCCCCCCCcC
Q 020201 183 KAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMK-----KGPVFTDPHLKWYEPQSYLLGKEYFLHAYG 257 (329)
Q Consensus 183 ~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~-----~~pv~Rd~~~Kwyvs~~~y~~~~yp~y~~G 257 (329)
..+.+....+|++.+|+|..+.++.|.+++...... ...+|... .....+-...++... + .....+ ..+
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~-~~~ 138 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRAD-GAVAGAFRLRFDDPGPRLRLLELGANLR---S-RLFGLP-YGD 138 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcC-CcEEEEEEeeecCCccchhhhhhcccce---e-cccCCC-cCC
Confidence 334444568999999999999988888876654333 33334321 111101000111110 0 001112 235
Q ss_pred CceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCc
Q 020201 258 PLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 258 ~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~ 298 (329)
.+.++++++.+.+.... .. +..||.-++.=+.+.|-.
T Consensus 139 ~~~~~r~~~~~~~G~fd-~~---~~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 139 QGLFIRRELFEELGGFP-EL---PLMEDVELVRRLRRRGRP 175 (221)
T ss_pred ceEEEEHHHHHHhCCCC-cc---ccccHHHHHHHHHhCCCE
Confidence 57899999988775432 22 278999998877777643
No 58
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=68.64 E-value=53 Score=25.48 Aligned_cols=84 Identities=18% Similarity=0.134 Sum_probs=52.3
Q ss_pred HHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCc-eEEeccccccccCCCCCccccccccCCCCCCCCCcCC
Q 020201 180 AFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQT-YLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAYGP 258 (329)
Q Consensus 180 ~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~-y~G~~~~~pv~Rd~~~Kwyvs~~~y~~~~yp~y~~G~ 258 (329)
..+..+.+..+.+|++-+|+|..+.++.+...+......+.. .++.. +
T Consensus 67 ~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~-------------------------------~ 115 (156)
T cd00761 67 AARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP-------------------------------G 115 (156)
T ss_pred HHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc-------------------------------c
Confidence 334444444489999999999999999888874443222111 11100 7
Q ss_pred ceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCC
Q 020201 259 LYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMN 296 (329)
Q Consensus 259 gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~g 296 (329)
++++++++.+.+.... . ......||..++..+...|
T Consensus 116 ~~~~~~~~~~~~~~~~-~-~~~~~~ed~~~~~~~~~~g 151 (156)
T cd00761 116 NLLFRRELLEEIGGFD-E-ALLSGEEDDDFLLRLLRGG 151 (156)
T ss_pred hheeeHHHHHHhCCcc-h-HhcCCcchHHHHHHHHhhc
Confidence 8999999998875431 1 1122278888876665544
No 59
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=66.79 E-value=46 Score=32.39 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=48.4
Q ss_pred HHHHHhhcCCcceEEEeCCceEEcHH---HHHHHHhhcCCCCCceEEe-ccccccccCCCCCccccccccCCCCCC-CCC
Q 020201 181 FFKAAYALYDSEFYVKADDDIYLRPD---RLSLLLAKERPHSQTYLGC-MKKGPVFTDPHLKWYEPQSYLLGKEYF-LHA 255 (329)
Q Consensus 181 ~l~w~~~~~~~~fvlK~DDD~~Vn~~---~L~~~L~~~~~~~~~y~G~-~~~~pv~Rd~~~Kwyvs~~~y~~~~yp-~y~ 255 (329)
++.|+-+..++++++.+|||..+.++ -+.+.|......+.+++=. .+. .++....... +...|- .|+
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd-------nG~~~~~~~~-~~~lyrs~ff 159 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND-------NGKEHFVDDT-PSLLYRTDFF 159 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc-------CCcccccCCC-cceEEEecCC
Confidence 55555544479999999999999999 4556665555455554321 211 1111100000 112222 456
Q ss_pred cCCceeecHHHHHHH
Q 020201 256 YGPLYALSADVVVSL 270 (329)
Q Consensus 256 ~G~gYvlS~~~v~~l 270 (329)
.|.|.++.+++-+.+
T Consensus 160 ~glGWml~r~~W~e~ 174 (334)
T cd02514 160 PGLGWMLTRKLWKEL 174 (334)
T ss_pred CchHHHHHHHHHHHh
Confidence 799999999998877
No 60
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=65.45 E-value=2e+02 Score=31.03 Aligned_cols=189 Identities=11% Similarity=-0.013 Sum_probs=98.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccC
Q 020201 93 KVMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYS 172 (329)
Q Consensus 93 ~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~ 172 (329)
...+-|+|.-.-+...-.+.|...=..... .++.++++.. .+|+.....+++-.++|.++..+-... .
T Consensus 62 ~~~vsIlVPa~nE~~vi~~~i~~ll~~ldY---------P~~eI~vi~~-~nD~~T~~~~~~l~~~~p~~~~v~~~~--~ 129 (727)
T PRK11234 62 EKPLAIMVPAWNETGVIGNMAELAATTLDY---------ENYHIFVGTY-PNDPATQADVDAVCARFPNVHKVVCAR--P 129 (727)
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHhCCC---------CCeEEEEEec-CCChhHHHHHHHHHHHCCCcEEEEeCC--C
Confidence 345667777755555555555543212221 1345555543 444444455555567788764333222 1
Q ss_pred CchhHHHHHHHHHhh-c------C--CcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCCCCccccc
Q 020201 173 KLPYKTLAFFKAAYA-L------Y--DSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQ 243 (329)
Q Consensus 173 nlt~Ktl~~l~w~~~-~------~--~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~~Kwyvs~ 243 (329)
+.+.|.-+ ++|+.. . . .++.++-.|-|+.|.++.|. .+..........-+... |..|+ .+.| +..
T Consensus 130 g~~gKa~a-LN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~--p~~~~-~~~~-~~~ 203 (727)
T PRK11234 130 GPTSKADC-LNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVY--PFERE-WTHF-TSG 203 (727)
T ss_pred CCCCHHHH-HHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeeccc--CCCcc-HHHH-HHH
Confidence 22456543 455443 1 1 34557779999999999997 44433222122111111 21111 0111 100
Q ss_pred ---cccC----C-----C--CCCCCCcCCceeecHHHHHHHHHhh--CcCCCCCCcchHHHHHHHHhCCCce
Q 020201 244 ---SYLL----G-----K--EYFLHAYGPLYALSADVVVSLVALK--NNSFRMFSNEDVTIGSWMLAMNVNH 299 (329)
Q Consensus 244 ---~~y~----~-----~--~yp~y~~G~gYvlS~~~v~~l~~~~--~~~~~~~~~EDv~iG~~l~~~gV~~ 299 (329)
.+|. . . .-+-.++|.+..+++.+++.+.+.. ..-....--||.-+|.-+...|.+.
T Consensus 204 ~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v 275 (727)
T PRK11234 204 TYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMRE 275 (727)
T ss_pred HHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEE
Confidence 1111 0 1 1234578999999999877666542 0122345589999999999888653
No 61
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=61.42 E-value=66 Score=27.87 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=82.8
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHhhCCCE-EEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHH
Q 020201 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDDF-ILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLL 211 (329)
Q Consensus 133 ~i~~~FvvG~~~~~~~~~~l~~E~~~~~Di-I~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~ 211 (329)
...++.|-+.+.+. ....+++..++++.. ..+....+. .|. .+++...+....+|++.+|+|....++.+..+
T Consensus 30 ~~eiivvdd~S~D~-t~~~~~~~~~~~~~~i~~i~~~~n~----G~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 30 SYEIIVVDDGSKDG-TAEVARKLARKNPALIRVLTLPKNR----GKG-GAVRAGMLAARGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CEEEEEEeCCCCCc-hHHHHHHHHHhCCCcEEEEEcccCC----CcH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 34566665555443 334444445556654 333333221 222 33334444446799999999999999999998
Q ss_pred Hhh-cCCCCCceEEeccccccccC-CCCCccc---ccc------ccCCCCCCCCCcCCceeecHHHHHHHHHhhCcCCCC
Q 020201 212 LAK-ERPHSQTYLGCMKKGPVFTD-PHLKWYE---PQS------YLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRM 280 (329)
Q Consensus 212 L~~-~~~~~~~y~G~~~~~pv~Rd-~~~Kwyv---s~~------~y~~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~ 280 (329)
+.. ......+.+|......- .. ....|+. +.. ......+. -...+..+++++++..+... .....
T Consensus 104 ~~~~~~~~~~~v~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~g~~~~~r~~~~~~~~~--~~~~~ 179 (211)
T cd04188 104 EEALKTSGYDIAIGSRAHLAS-AAVVKRSWLRNLLGRGFNFLVRLLLGLGIK-DTQCGFKLFTRDAARRLFPR--LHLER 179 (211)
T ss_pred HHHHhccCCcEEEEEeeccCC-cccccccHHHHHHHHHHHHHHHHHcCCCCc-ccccCceeEcHHHHHHHHhh--hhccc
Confidence 886 33344566665321000 00 0011111 000 00011111 12345689999999998642 11222
Q ss_pred CCcchHHHHHHHHhCCCceeeC
Q 020201 281 FSNEDVTIGSWMLAMNVNHEDN 302 (329)
Q Consensus 281 ~~~EDv~iG~~l~~~gV~~~~~ 302 (329)
+ .+|.-+..-+.+.|.+-...
T Consensus 180 ~-~~d~el~~r~~~~g~~~~~v 200 (211)
T cd04188 180 W-AFDVELLVLARRLGYPIEEV 200 (211)
T ss_pred e-EeeHHHHHHHHHcCCeEEEc
Confidence 2 46888877777777654443
No 62
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=60.20 E-value=10 Score=34.37 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=62.5
Q ss_pred CCcceEEEeCCceEEcHHHHHHHHhhcCCCCCc--eEEeccc-----cccccCCCCCccccc----cccCCCCCCCCCcC
Q 020201 189 YDSEFYVKADDDIYLRPDRLSLLLAKERPHSQT--YLGCMKK-----GPVFTDPHLKWYEPQ----SYLLGKEYFLHAYG 257 (329)
Q Consensus 189 ~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~--y~G~~~~-----~pv~Rd~~~Kwyvs~----~~y~~~~yp~y~~G 257 (329)
.+.+|++.+|.|+.+.++.|..++......+.+ ..|.+.. ++..+-..--|..+. .....-.+...+.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 488999999999999999998888765322222 3343311 111000000000000 00011234566789
Q ss_pred CceeecHHHHHHHHHhhC---------cCC-------CCCCcchHHHHHHHHhCCCce
Q 020201 258 PLYALSADVVVSLVALKN---------NSF-------RMFSNEDVTIGSWMLAMNVNH 299 (329)
Q Consensus 258 ~gYvlS~~~v~~l~~~~~---------~~~-------~~~~~EDv~iG~~l~~~gV~~ 299 (329)
+++++.+++++....... ... .....||..++..+...|-+.
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~ 209 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKR 209 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCcc
Confidence 999999998877532110 000 122479999998888777543
No 63
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=57.86 E-value=71 Score=27.84 Aligned_cols=44 Identities=23% Similarity=0.381 Sum_probs=30.5
Q ss_pred HHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEe
Q 020201 182 FKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGC 225 (329)
Q Consensus 182 l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~ 225 (329)
.....+....+|++.+|+|..+.++.+...+.....+....+|+
T Consensus 76 ~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 76 KNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 34445556789999999999999998887765543233334454
No 64
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=56.37 E-value=58 Score=24.68 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=39.3
Q ss_pred CCcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCCchhHHHHHHHHHhh-cCCcceEEEeCCceEEcHHH
Q 020201 132 TGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYA-LYDSEFYVKADDDIYLRPDR 207 (329)
Q Consensus 132 ~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~-~~~~~fvlK~DDD~~Vn~~~ 207 (329)
.|+.-++|+-..+++.. .++-++ +.++-.....+.+..-... ...++.+.+ ..+++|++.+|-|=|+.++.
T Consensus 17 lG~d~i~i~d~~s~D~t-~~~l~~---~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 17 LGVDHIYIYDDGSTDGT-REILRA---LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred cCCCEEEEEECCCCccH-HHHHHh---CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 35565555543333222 233232 3555555555555443333 334444444 36899999999999997654
No 65
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=54.90 E-value=83 Score=31.21 Aligned_cols=104 Identities=13% Similarity=0.242 Sum_probs=56.6
Q ss_pred CcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCCC-------Ccccc---ccccCCCCCCCCCcCC-
Q 020201 190 DSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHL-------KWYEP---QSYLLGKEYFLHAYGP- 258 (329)
Q Consensus 190 ~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~~-------Kwyvs---~~~y~~~~yp~y~~G~- 258 (329)
.+++++..|||+++.+|.+.+......+++. +|-+..+|...|..+ +++.. .-.++++.--.-|.|+
T Consensus 170 ~ydlvlisDsgI~m~pdtildm~t~M~shek--malvtq~py~~dr~Gf~atle~~~fgTsh~r~yl~~n~~~~~c~tgm 247 (431)
T KOG2547|consen 170 KYDLVLISDSGIFMKPDTILDMATTMMSHEK--MALVTQTPYCKDRQGFDATLEQVYFGTSHPRIYLSGNVLGFNCSTGM 247 (431)
T ss_pred cCCEEEEecCCeeecCchHHHHHHhhhcccc--eeeecCCceeeccccchhhhhheeeccCCceEEEccccccccccccH
Confidence 5679999999999999999999887654332 455555554444433 11111 0011222222224322
Q ss_pred ceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCC
Q 020201 259 LYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNV 297 (329)
Q Consensus 259 gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV 297 (329)
--.|-++++....-. ..+...-.||-+++.++..-|.
T Consensus 248 s~~mrK~~ld~~ggi--~~f~~yLaedyFaaksllSRG~ 284 (431)
T KOG2547|consen 248 SSMMRKEALDECGGI--SAFGGYLAEDYFAAKSLLSRGW 284 (431)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHhhhh
Confidence 223333333322111 2233455889999888876664
No 66
>PLN03181 glycosyltransferase; Provisional
Probab=49.94 E-value=2.9e+02 Score=27.93 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=34.8
Q ss_pred HhhCC-CEEEecc--ccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEc
Q 020201 156 VAEYD-DFILLDI--EEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLR 204 (329)
Q Consensus 156 ~~~~~-DiI~~d~--~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn 204 (329)
+++|| ++...+. ...+..-..|+.++-+-+.++++++|+.-+|.|+++-
T Consensus 161 ArrHGY~lf~~~a~Ld~~~p~~WaKipalRaAM~a~PeAEWfWWLDsDALIM 212 (453)
T PLN03181 161 CRIHGYDIFYNNALLHPKMNSYWAKLPVVRAAMLAHPEAEWIWWVDSDAVFT 212 (453)
T ss_pred HHHhCCcEEEeccccCccCchhhhHHHHHHHHHHHCCCceEEEEecCCceee
Confidence 56666 5554432 2345556667777766777799999999999999884
No 67
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=46.86 E-value=29 Score=21.27 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhc
Q 020201 24 LIFSCLIIGIAGFVLGISAFLYA 46 (329)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~ 46 (329)
+.-++..+++++|+|-+.+++||
T Consensus 4 ~~wls~a~a~~Lf~YLv~ALlRa 26 (29)
T PRK14740 4 LDWLSLALATGLFVYLLVALLRA 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456778889999988898888
No 68
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=46.72 E-value=1.2e+02 Score=28.40 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=29.2
Q ss_pred CCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCC
Q 020201 254 HAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMN 296 (329)
Q Consensus 254 y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~g 296 (329)
+.+-+||++|+.+++.+++.....-...+.|+...-.+....|
T Consensus 154 ~~gt~gYiis~~aAk~fl~~~~~~~~~~pvD~~~~~~~~~~~~ 196 (255)
T COG3306 154 HLGTAGYIISRKAAKKFLELTESFKVVLPVDWFMFLEFLHGVG 196 (255)
T ss_pred ccCccceeecHHHHHHHHHHhhhcccccChhHHHhhhhccccC
Confidence 4566899999999999998742212345677776656653333
No 69
>PRK10018 putative glycosyl transferase; Provisional
Probab=46.40 E-value=2.5e+02 Score=26.23 Aligned_cols=35 Identities=34% Similarity=0.450 Sum_probs=27.5
Q ss_pred HHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhc
Q 020201 181 FFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKE 215 (329)
Q Consensus 181 ~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~ 215 (329)
+.+.+.+....+|++..|+|..+.++.|..++...
T Consensus 76 a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 76 VRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 34444455688999999999999999988887654
No 70
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=44.29 E-value=2.2e+02 Score=29.81 Aligned_cols=111 Identities=15% Similarity=0.092 Sum_probs=74.2
Q ss_pred EEEEEeCCCCCHHHH-HHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHH-------HHHHHHHHhhCCCEEEecc
Q 020201 96 GFVGIQTGFGSGGRR-RSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSK-------MAELRKEVAEYDDFILLDI 167 (329)
Q Consensus 96 lli~V~S~~~~~~rR-~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~-------~~~l~~E~~~~~DiI~~d~ 167 (329)
-.|++.+--+...|- ..+|.||.+.... .+...++ +||+..+.|++. -.++.+|..-++.|.--
T Consensus 146 TAilmPiynEd~~rVfAgLrA~~eSla~T-----g~~~~FD-~FVLSDs~dpdialAEq~a~~~l~~e~~g~~~ifYR-- 217 (736)
T COG2943 146 TAILMPIYNEDVNRVFAGLRATYESLAAT-----GHAEHFD-FFVLSDSRDPDIALAEQKAWAELCRELGGEGNIFYR-- 217 (736)
T ss_pred eeEEeeccccCHHHHHHHHHHHHHHHHhh-----CCcccce-EEEEcCCCCchhhhhHHHHHHHHHHHhCCCCceeee--
Confidence 456666665666665 7889998876432 1222333 589998887653 24466676666666321
Q ss_pred ccccCCchhHHHHHHHHHhh-cCCcceEEEeCCceEEcHHHHHHHHhhc
Q 020201 168 EEEYSKLPYKTLAFFKAAYA-LYDSEFYVKADDDIYLRPDRLSLLLAKE 215 (329)
Q Consensus 168 ~D~y~nlt~Ktl~~l~w~~~-~~~~~fvlK~DDD~~Vn~~~L~~~L~~~ 215 (329)
-..+|.-.|.=..-.|... -..++|.+-.|-|...-.+-|.++....
T Consensus 218 -rRr~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~M 265 (736)
T COG2943 218 -RRRRNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLM 265 (736)
T ss_pred -hHhhhhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHH
Confidence 1234566777777777777 4689999999999999988888777654
No 71
>PHA03164 hypothetical protein; Provisional
Probab=43.58 E-value=24 Score=26.75 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=16.9
Q ss_pred CcceehhHHHHHHH-HHHHHHHHhhh
Q 020201 19 RKSTVLIFSCLIIG-IAGFVLGISAF 43 (329)
Q Consensus 19 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 43 (329)
++.++++|.||+++ +.+++|-|+.|
T Consensus 56 ktftFlvLtgLaIamILfiifvlyvF 81 (88)
T PHA03164 56 KTFTFLVLTGLAIAMILFIIFVLYVF 81 (88)
T ss_pred heeehHHHHHHHHHHHHHHHHHHHhe
Confidence 36677888899888 44556655544
No 72
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=43.01 E-value=53 Score=22.85 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=22.9
Q ss_pred eehhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCC
Q 020201 22 TVLIFSCLIIGIAGFVLGISAFLYAGRGAHRCSNFN 57 (329)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (329)
..|+++++++.++.+.+.+...+.. .+++|.-.+
T Consensus 2 ~~~~iV~i~iv~~lLg~~I~~~~K~--ygYkht~d~ 35 (50)
T PF12606_consen 2 IAFLIVSIFIVMGLLGLSICTTLKA--YGYKHTVDP 35 (50)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhhc--cccccccCC
Confidence 3567777777777776766665555 699995433
No 73
>PHA01631 hypothetical protein
Probab=40.84 E-value=82 Score=27.60 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=54.1
Q ss_pred CCCEEEeccccccCCchhHHHHHHHHHhh---cCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCC
Q 020201 159 YDDFILLDIEEEYSKLPYKTLAFFKAAYA---LYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDP 235 (329)
Q Consensus 159 ~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~---~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~ 235 (329)
+.+|+.......+++ +..-.++..+.+ .-+-+.++.+|.|++|+.-. .. .++..++.=|. |. +
T Consensus 39 ~~~Ii~~~t~~e~Rr--~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~Ci---PA-~-- 104 (176)
T PHA01631 39 QEKIIWIMTNTEIRW--LRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCY---WL-Y-- 104 (176)
T ss_pred CCceEEecccchhHH--HHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceee---ee-e--
Confidence 567777665444444 223333334433 24668889999999997432 11 22333444443 22 1
Q ss_pred CCCccccccccCCCCCCCCCcCCceeecHHHHHHHHHh
Q 020201 236 HLKWYEPQSYLLGKEYFLHAYGPLYALSADVVVSLVAL 273 (329)
Q Consensus 236 ~~Kwyvs~~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~ 273 (329)
.| |.+..-+||.|.-+++.++.+..|...
T Consensus 105 -~k--------p~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 105 -YD--------WANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred -ec--------CCCcEEEEEccccEEeeHHHhHHHHHH
Confidence 11 233455899999999999999998753
No 74
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=33.72 E-value=2.6e+02 Score=23.83 Aligned_cols=75 Identities=11% Similarity=-0.009 Sum_probs=43.4
Q ss_pred cceEEEeCCceEEcHHHHHHHHhhcCCCCCc--eEEeccccccccCCCCCccccc--cccC----------CCCCCCCCc
Q 020201 191 SEFYVKADDDIYLRPDRLSLLLAKERPHSQT--YLGCMKKGPVFTDPHLKWYEPQ--SYLL----------GKEYFLHAY 256 (329)
Q Consensus 191 ~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~--y~G~~~~~pv~Rd~~~Kwyvs~--~~y~----------~~~yp~y~~ 256 (329)
.+|++..|.|..+.++.|........ .+.+ ..|.+.. .+...+|+... .+|- ...-..+.+
T Consensus 90 ~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~~----~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 164 (191)
T cd06436 90 RVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQSRVRM----YNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLG 164 (191)
T ss_pred ccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEeeeEEE----ecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEEC
Confidence 47999999999999999998655443 2222 2223211 23333442110 0000 001112357
Q ss_pred CCceeecHHHHHHH
Q 020201 257 GPLYALSADVVVSL 270 (329)
Q Consensus 257 G~gYvlS~~~v~~l 270 (329)
|.+-++++++++.+
T Consensus 165 G~~~~~r~~~l~~v 178 (191)
T cd06436 165 GNGQFMRLSALDGL 178 (191)
T ss_pred CeeEEEeHHHHHHh
Confidence 89999999999988
No 75
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=32.93 E-value=51 Score=24.19 Aligned_cols=21 Identities=33% Similarity=0.687 Sum_probs=14.2
Q ss_pred ehhHHHHHHH-HHHHHHHHhhh
Q 020201 23 VLIFSCLIIG-IAGFVLGISAF 43 (329)
Q Consensus 23 ~~~~~~~~~~-~~~~~~~~~~~ 43 (329)
+++++|+++| +++|+++-..+
T Consensus 1 l~iilali~G~~~Gff~ar~~~ 22 (64)
T PF03672_consen 1 LLIILALIVGAVIGFFIARKYM 22 (64)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888 56777765554
No 76
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=32.57 E-value=4.5e+02 Score=25.13 Aligned_cols=197 Identities=11% Similarity=0.023 Sum_probs=92.8
Q ss_pred CCCCeeEEEEEeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhC----CCEEEe
Q 020201 90 KRHKVMGFVGIQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEY----DDFILL 165 (329)
Q Consensus 90 ~~~~~~lli~V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~----~DiI~~ 165 (329)
..+.+.+-|+|..--+...-.+.++++....... .+ ........+++|-..+.|.. .+.+++-.+.+ .++-.+
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~-~~-~~~~~~~EIIVVDDgStD~T-~~i~~~~~~~~~~~~~~i~vi 142 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESR-SR-KDPKFKYEIIIVNDGSKDKT-LKVAKDFWRQNINPNIDIRLL 142 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhh-hc-cCCCCCEEEEEEeCCCCCch-HHHHHHHHHhcCCCCCcEEEE
Confidence 4455566677766444333445666655432100 00 00012356666655554432 22222223333 235444
Q ss_pred ccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhc----CCCCCceEEecccccc-ccCCCCCcc
Q 020201 166 DIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKE----RPHSQTYLGCMKKGPV-FTDPHLKWY 240 (329)
Q Consensus 166 d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~----~~~~~~y~G~~~~~pv-~Rd~~~Kwy 240 (329)
....+. .|- .+++...+....+|++.+|.|....++.+..++... .+...+.+|......- ......+|+
T Consensus 143 ~~~~N~----G~~-~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~ 217 (333)
T PTZ00260 143 SLLRNK----GKG-GAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWY 217 (333)
T ss_pred EcCCCC----ChH-HHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHH
Confidence 433221 222 223334444578999999999999988876666543 1233466676421000 000011222
Q ss_pred c---cc------cccCCCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCc
Q 020201 241 E---PQ------SYLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 241 v---s~------~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~ 298 (329)
- .. ....+..+.. .+.+.-++++++++.+... .....+ .-|+-+-..+.+.|.+
T Consensus 218 r~~~~~~~~~l~~~~~~~~i~D-~~~Gfk~~~r~~~~~i~~~--~~~~~~-~fd~Ell~~a~~~g~~ 280 (333)
T PTZ00260 218 RNILMYGFHFIVNTICGTNLKD-TQCGFKLFTRETARIIFPS--LHLERW-AFDIEIVMIAQKLNLP 280 (333)
T ss_pred HHHHHHHHHHHHHHHcCCCccc-CCCCeEEEeHHHHHHHhhh--ccccCc-cchHHHHHHHHHcCCC
Confidence 1 00 0011222322 2334568999999988642 122222 2366666666667754
No 77
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.34 E-value=47 Score=26.23 Aligned_cols=20 Identities=10% Similarity=0.208 Sum_probs=10.5
Q ss_pred CCCcceehhHHHHHHHHHHHHH
Q 020201 17 SPRKSTVLIFSCLIIGIAGFVL 38 (329)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~ 38 (329)
|.+|+ |+|++|+|++.++|.
T Consensus 1 MaSK~--~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKA--FLLLGLLLAALLLIS 20 (95)
T ss_pred CchhH--HHHHHHHHHHHHHHH
Confidence 34455 555556665555444
No 78
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=30.48 E-value=1.7e+02 Score=27.94 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccc--cccCCchhHHHHHHHH
Q 020201 107 GGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIE--EEYSKLPYKTLAFFKA 184 (329)
Q Consensus 107 ~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~--D~y~nlt~Ktl~~l~w 184 (329)
-+.|+.-|..=.+-- ....++.++|+-|.. ..+..|..=......++.+++. +.+..-+.--..+..|
T Consensus 19 ~~~R~f~~~~~~k~f-------ts~~~~~vi~~~~~~---~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Y 88 (346)
T COG4092 19 TDSRQFSRTSAVKVF-------TSSDITMVICLRAHE---VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADY 88 (346)
T ss_pred hHHHHHhhHhhhhhc-------cccccEEEEEEecch---hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchh
Confidence 355666655433321 123355555665433 3345566666667777777765 3344445556677888
Q ss_pred HhhcCCcceEEEeCCceEEcHHHHHHHHhh-----cCCC--CCceE--Eeccc--cccccCCCC-Cccc-----ccccc-
Q 020201 185 AYALYDSEFYVKADDDIYLRPDRLSLLLAK-----ERPH--SQTYL--GCMKK--GPVFTDPHL-KWYE-----PQSYL- 246 (329)
Q Consensus 185 ~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~-----~~~~--~~~y~--G~~~~--~pv~Rd~~~-Kwyv-----s~~~y- 246 (329)
+++-+++.+++..|-|+|.-.++..+.|.- .+.. -.++. -+.++ +.+.-+-.+ +|-. +-.++
T Consensus 89 sh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f~d~~i~es~~~~~~ 168 (346)
T COG4092 89 SHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMFLDAMIFESPLAEFR 168 (346)
T ss_pred hhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHhhhhHhhhhHHHHhC
Confidence 888789999999999999999999998832 1111 11221 11111 111111011 1110 00000
Q ss_pred CCC-CC-CCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHH-HHHHHhCCC
Q 020201 247 LGK-EY-FLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTI-GSWMLAMNV 297 (329)
Q Consensus 247 ~~~-~y-p~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~i-G~~l~~~gV 297 (329)
.+. .+ |+|. +..++.++.-.+.... .+.+.-...||.-+ +++...++.
T Consensus 169 ~~~~ff~~~~T--~~~liN~~~F~~tgGy-dE~F~GhG~EDfe~~~R~~l~~~~ 219 (346)
T COG4092 169 KEDNFFIAPYT--NIFLINRRMFSLTGGY-DERFRGHGSEDFEFLTRLGLYIKN 219 (346)
T ss_pred ccccccccccc--ceEEEehhHHHHhcCC-ccccccCCchhHHHHHHHHHHHhc
Confidence 011 12 3333 4688888877766543 36677788999655 666655543
No 79
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=29.54 E-value=48 Score=27.53 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=25.8
Q ss_pred eeeeccCCCCCCCcceehhHHHHHHHHHHHHHHHhh
Q 020201 7 FFYARSAASPSPRKSTVLIFSCLIIGIAGFVLGISA 42 (329)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (329)
+|.+|.- -+++-...++.|+|+++.+++|+++.+.
T Consensus 24 lW~fR~E-D~tpWNysiL~Ls~vvlvi~~~LLgrsi 58 (125)
T PF15048_consen 24 LWFFRVE-DATPWNYSILALSFVVLVISFFLLGRSI 58 (125)
T ss_pred HHheecC-CCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 3555632 4566777888888888889998887766
No 80
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=29.50 E-value=68 Score=19.27 Aligned_cols=19 Identities=21% Similarity=0.348 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q 020201 28 CLIIGIAGFVLGISAFLYA 46 (329)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~ 46 (329)
.++++++.++|-+.++++|
T Consensus 3 ~~~l~~~L~~YL~~aLl~P 21 (26)
T TIGR02115 3 LLVLAVGLFIYLFYALLRP 21 (26)
T ss_pred HHHHHHHHHHHHHHHHhCH
Confidence 4667788888877888888
No 81
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=29.48 E-value=2.8e+02 Score=26.20 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=51.6
Q ss_pred cCCcEEEEEeccCCC-HHHHHHHHHH----------HhhCCCEEE--eccccc-------cC-----CchhHHHHHH-HH
Q 020201 131 ATGLAFRFIIGRTND-QSKMAELRKE----------VAEYDDFIL--LDIEEE-------YS-----KLPYKTLAFF-KA 184 (329)
Q Consensus 131 ~~~i~~~FvvG~~~~-~~~~~~l~~E----------~~~~~DiI~--~d~~D~-------y~-----nlt~Ktl~~l-~w 184 (329)
...|.+-|+++.+.. +...+.++++ ...|+.|.+ -||.+. .+ ..-.+.++-. +|
T Consensus 54 ~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~ 133 (269)
T PF03452_consen 54 HELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNF 133 (269)
T ss_pred chheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHH
Confidence 346788999998872 2233334433 334666643 355432 11 1112222222 23
Q ss_pred Hhh---cCCcceEEEeCCceEEcHHHHHHHHhhcC
Q 020201 185 AYA---LYDSEFYVKADDDIYLRPDRLSLLLAKER 216 (329)
Q Consensus 185 ~~~---~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~ 216 (329)
+.. -+..+|++-.|-|+.-.++.|++.|-.++
T Consensus 134 LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 134 LLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 332 25789999999999999999999887754
No 82
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=29.32 E-value=4e+02 Score=27.02 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhh----cCCcceEEEeCCceEEcHHHHHHHHhhc---CCCCCceEEe-ccccccccCCCCCccc----cc
Q 020201 176 YKTLAFFKAAYA----LYDSEFYVKADDDIYLRPDRLSLLLAKE---RPHSQTYLGC-MKKGPVFTDPHLKWYE----PQ 243 (329)
Q Consensus 176 ~Ktl~~l~w~~~----~~~~~fvlK~DDD~~Vn~~~L~~~L~~~---~~~~~~y~G~-~~~~pv~Rd~~~Kwyv----s~ 243 (329)
+|.-.=++|+.+ ..+++.++-+.||.-+-||-+.-+-... ...+.+|+=. ++. +..+..+ |.
T Consensus 173 ~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawNd------nG~~~~~~~~~~~ 246 (434)
T PF03071_consen 173 YKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWND------NGKEHFVDDSRPS 246 (434)
T ss_dssp HHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--T------T-BGGGS-TT-TT
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEcccc------CCccccccCCCcc
Confidence 345556777766 2468899999999999887655443321 2344566432 221 1111111 22
Q ss_pred cccCCCCCCCCCcCCceeecHHHHHHHH
Q 020201 244 SYLLGKEYFLHAYGPLYALSADVVVSLV 271 (329)
Q Consensus 244 ~~y~~~~yp~y~~G~gYvlS~~~v~~l~ 271 (329)
..|-.+.+ .|.|++|++++-..|.
T Consensus 247 ~lyRsdff----pglGWml~r~~w~el~ 270 (434)
T PF03071_consen 247 LLYRSDFF----PGLGWMLTRELWDELE 270 (434)
T ss_dssp -EEEESS-------SSEEEEHHHHHHHG
T ss_pred ceEecccC----CchHHHhhHHHHHhhc
Confidence 23333333 4999999999998763
No 83
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=28.26 E-value=1.4e+02 Score=28.97 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=41.5
Q ss_pred HHHHHH-HhhCCCEEEecc-----ccccCCchhHHHHHHHHHhhc-CCcceEEEeCCceEEcHHHHHHHHh
Q 020201 150 AELRKE-VAEYDDFILLDI-----EEEYSKLPYKTLAFFKAAYAL-YDSEFYVKADDDIYLRPDRLSLLLA 213 (329)
Q Consensus 150 ~~l~~E-~~~~~DiI~~d~-----~D~y~nlt~Ktl~~l~w~~~~-~~~~fvlK~DDD~~Vn~~~L~~~L~ 213 (329)
+++-.| .++|.+.|-+-. ..+-....-+....++|+... +..+|++|+|.|-.-....|....-
T Consensus 128 ~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY 198 (347)
T PF06306_consen 128 EEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFY 198 (347)
T ss_pred HHHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhhe
Confidence 444444 677777653211 011111122456677888774 7899999999999999999977654
No 84
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=27.11 E-value=93 Score=18.47 Aligned_cols=19 Identities=32% Similarity=0.252 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q 020201 28 CLIIGIAGFVLGISAFLYA 46 (329)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~ 46 (329)
..+++++.++|-+.++++|
T Consensus 4 ~~~v~~~L~~YL~~aLl~P 22 (25)
T PF09604_consen 4 GGIVAVALFVYLFYALLRP 22 (25)
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 3567777888877787887
No 85
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=22.92 E-value=2.1e+02 Score=26.64 Aligned_cols=52 Identities=15% Similarity=0.011 Sum_probs=42.4
Q ss_pred CCCEEEeccccccCCchhHHHHHHHHHhhcC-Ccc------eEEEeCCceEEcHHHHHHHHhh
Q 020201 159 YDDFILLDIEEEYSKLPYKTLAFFKAAYALY-DSE------FYVKADDDIYLRPDRLSLLLAK 214 (329)
Q Consensus 159 ~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~-~~~------fvlK~DDD~~Vn~~~L~~~L~~ 214 (329)
+||++.+.-.++ +.||....+-+.+|- +.+ -|+.+|-|.-+++-+|.+.|+.
T Consensus 37 aG~~vEi~Gp~~----sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~h 95 (293)
T KOG2859|consen 37 AGTLVEISGPGN----SGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRH 95 (293)
T ss_pred cCcEEEEeCCCC----ccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHH
Confidence 788887765544 689999999999972 322 3999999999999999999975
No 86
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.80 E-value=81 Score=23.56 Aligned_cols=16 Identities=44% Similarity=0.872 Sum_probs=9.5
Q ss_pred ehhHHHHHHH-HHHHHH
Q 020201 23 VLIFSCLIIG-IAGFVL 38 (329)
Q Consensus 23 ~~~~~~~~~~-~~~~~~ 38 (329)
+++++||++| ++||++
T Consensus 8 l~ivl~ll~G~~~G~fi 24 (71)
T COG3763 8 LLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 4566677776 445544
No 87
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=20.42 E-value=1.5e+02 Score=18.28 Aligned_cols=21 Identities=10% Similarity=-0.031 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q 020201 26 FSCLIIGIAGFVLGISAFLYA 46 (329)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~ 46 (329)
.+..+++++.++|=+.+++||
T Consensus 6 ~l~~~va~~L~vYL~~ALlrP 26 (29)
T PRK14759 6 SLAGAVSLGLLIYLTYALLRP 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 344566777888877788888
Done!