Query 020201
Match_columns 329
No_of_seqs 159 out of 1138
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 13:19:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.9 7.6E-26 2.6E-30 211.6 15.3 191 93-307 12-214 (280)
2 1xhb_A Polypeptide N-acetylgal 95.8 0.35 1.2E-05 46.9 16.8 157 135-297 63-245 (472)
3 1qg8_A Protein (spore coat pol 95.2 0.58 2E-05 40.6 14.8 157 133-296 30-201 (255)
4 2ffu_A Ppgalnact-2, polypeptid 94.6 0.98 3.3E-05 44.1 15.9 153 135-297 100-277 (501)
5 2d7i_A Polypeptide N-acetylgal 94.5 0.86 2.9E-05 45.6 15.5 157 135-297 146-325 (570)
6 4fix_A UDP-galactofuranosyl tr 93.7 0.89 3E-05 46.6 14.0 116 180-298 258-405 (657)
7 4hg6_A Cellulose synthase subu 92.8 6.3 0.00021 41.1 19.2 119 176-299 225-357 (802)
8 2z86_A Chondroitin synthase; G 89.1 9.2 0.00031 38.1 15.5 118 180-298 164-318 (625)
9 2z86_A Chondroitin synthase; G 85.8 13 0.00046 36.8 14.4 150 133-296 404-559 (625)
10 3bcv_A Putative glycosyltransf 79.0 22 0.00074 29.9 11.4 156 133-297 34-212 (240)
11 2bo4_A Mannosylglycerate synth 43.1 2.2E+02 0.0075 26.8 13.8 164 134-299 29-206 (397)
12 1fo8_A Alpha-1,3-mannosyl-glyc 36.4 59 0.002 30.3 6.2 82 181-270 90-177 (343)
13 2l82_A Designed protein OR32; 26.7 1.2E+02 0.0041 23.7 5.4 52 100-163 55-106 (162)
14 3l7i_A Teichoic acid biosynthe 24.8 15 0.00053 37.4 0.0 109 182-296 75-191 (729)
15 2lnd_A De novo designed protei 21.8 2.3E+02 0.0079 20.8 5.9 72 101-187 32-104 (112)
16 2fy7_A Beta-1,4-galactosyltran 20.8 4.4E+02 0.015 23.3 9.0 91 187-298 126-216 (287)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.93 E-value=7.6e-26 Score=211.57 Aligned_cols=191 Identities=18% Similarity=0.248 Sum_probs=131.1
Q ss_pred CeeEEEEEeCCCC-CHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEecccc--
Q 020201 93 KVMGFVGIQTGFG-SGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEE-- 169 (329)
Q Consensus 93 ~~~lli~V~S~~~-~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D-- 169 (329)
.-+++|+|+|+++ +.+|+.+||+||++..+. . .||.+...++. +... ..+++++.++.+
T Consensus 12 ~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~-----------~-~fifsd~~d~~----l~~~--~~~~~~~~~~~~~~ 73 (280)
T 2j0a_A 12 LGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQ-----------Q-TFIFTDSPDER----LQER--LGPHLVVTQCSAEH 73 (280)
T ss_dssp GGGEEEEEECCGGGTTTTHHHHHHTGGGGSGG-----------G-EEEEESSCCHH----HHHH--HGGGEEECCC----
T ss_pred cccEEEEEECcHHHHHHHHHHHHHHHhccCCC-----------c-eEEEcCCCccc----cccc--ccccceeccccccc
Confidence 4568899999998 567889999999987531 1 34444444433 2222 245788877654
Q ss_pred ccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEecc-ccccccCCCCCccccccccCC
Q 020201 170 EYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMK-KGPVFTDPHLKWYEPQSYLLG 248 (329)
Q Consensus 170 ~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~-~~pv~Rd~~~Kwyvs~~~y~~ 248 (329)
++.+++.|+...+++.. ..+++|++|+|||+||++++|+++|...++.+++|+|... ..|+ | .+++++...++.
T Consensus 74 ~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~-~---~~~~~~~~~~~~ 148 (280)
T 2j0a_A 74 SHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPI-H---ASELQSKQRTKL 148 (280)
T ss_dssp ---CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC---------------------
T ss_pred cccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccc-c---ccccCccccccc
Confidence 67789999999988654 3699999999999999999999999999889999999964 3344 3 134554433333
Q ss_pred CCCCCCC-cCCceeecHHHHHHHHHhhCcC------CCCCCcchHHHHHHHH-hCCCceeeCCCccc
Q 020201 249 KEYFLHA-YGPLYALSADVVVSLVALKNNS------FRMFSNEDVTIGSWML-AMNVNHEDNRELCQ 307 (329)
Q Consensus 249 ~~yp~y~-~G~gYvlS~~~v~~l~~~~~~~------~~~~~~EDv~iG~~l~-~~gV~~~~~~~~~~ 307 (329)
..|+ || +|+||+||++++++|+...... ......||+++|.|++ ++||.+.+.+.|++
T Consensus 149 ~~~~-y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~ 214 (280)
T 2j0a_A 149 VRFW-FATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHS 214 (280)
T ss_dssp --CC-EECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCC
T ss_pred cccC-cccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccC
Confidence 3454 66 5789999999999999742111 1233469999999998 99999999999986
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=95.76 E-value=0.35 Score=46.87 Aligned_cols=157 Identities=11% Similarity=0.069 Sum_probs=87.6
Q ss_pred EEEEEeccCCCHHHHHHHHHHHhhCC-CEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHh
Q 020201 135 AFRFIIGRTNDQSKMAELRKEVAEYD-DFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLA 213 (329)
Q Consensus 135 ~~~FvvG~~~~~~~~~~l~~E~~~~~-DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~ 213 (329)
.++.|-..+.++.....+++-.+++. .+..+...++. . .-.+.....+....+|++..|+|+.+.++.|..++.
T Consensus 63 EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~-G----~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~ 137 (472)
T 1xhb_A 63 EIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRS-G----LIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLA 137 (472)
T ss_dssp EEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCC-C----HHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCC-C----hHHHHHHHHHhccCCeEEEECCCeEeCccHHHHHHH
Confidence 45555544544334445555556676 56665544332 1 233444455556789999999999999988888887
Q ss_pred hcCCCC-CceEEecc---ccccccCCCC-------Cccc-------cccc-------cCCCCCCCCCcCCceeecHHHHH
Q 020201 214 KERPHS-QTYLGCMK---KGPVFTDPHL-------KWYE-------PQSY-------LLGKEYFLHAYGPLYALSADVVV 268 (329)
Q Consensus 214 ~~~~~~-~~y~G~~~---~~pv~Rd~~~-------Kwyv-------s~~~-------y~~~~yp~y~~G~gYvlS~~~v~ 268 (329)
...... ...+|.+. .........+ .|.. +..+ ......-+++.|+++++++++.+
T Consensus 138 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~ 217 (472)
T 1xhb_A 138 RIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQ 217 (472)
T ss_dssp HHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHH
T ss_pred HHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHH
Confidence 643222 23333321 1100000000 0110 0000 00122235678999999999999
Q ss_pred HHHHhhCcCCCCCCcchHHHHHHHHhCCC
Q 020201 269 SLVALKNNSFRMFSNEDVTIGSWMLAMNV 297 (329)
Q Consensus 269 ~l~~~~~~~~~~~~~EDv~iG~~l~~~gV 297 (329)
.+-.. ...+..+..||+-++.=+...|.
T Consensus 218 ~iGgf-de~~~~~g~ED~dl~~R~~~~G~ 245 (472)
T 1xhb_A 218 EIGTY-DAGMDIWGGENLEISFRIWQCGG 245 (472)
T ss_dssp HTTSC-CTTSCTTCCCCSHHHHHHHHTTC
T ss_pred HcCCC-CCcccccCchhHHHHHHHHhcCC
Confidence 88543 23344445899999987777774
No 3
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=95.19 E-value=0.58 Score=40.65 Aligned_cols=157 Identities=11% Similarity=0.068 Sum_probs=84.9
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEecccccc-----CCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHH
Q 020201 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEY-----SKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDR 207 (329)
Q Consensus 133 ~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y-----~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~ 207 (329)
.+.++.|-..+.+ . ..++-++......+..+.....- .| .-.-.+++.+.+..+.+|++..|+|.++.++.
T Consensus 30 ~~eiivvDd~S~d-~-t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n--~G~~~a~N~gi~~a~g~~i~~lD~Dd~~~~~~ 105 (255)
T 1qg8_A 30 DFELFIMDDNSNE-E-TLNVIRPFLNDNRVRFYQSDISGVKERTEK--TRYAALINQAIEMAEGEYITYATDDNIYMPDR 105 (255)
T ss_dssp CEEEEEEECSCCH-H-HHHHHGGGGGSTTEEEEECCCCSHHHHHSS--CHHHHHHHHHHHHCCCSEEEEEETTEEECTTH
T ss_pred ceEEEEEECCCCc-h-HHHHHHHHhhcCCEEEEecccccccccccc--cCHHHHHHHHHHHcCCCEEEEeCCCCccChHH
Confidence 3455555544433 2 33344444345566554433110 22 12344566666666889999999999999998
Q ss_pred HHHHHhhcC--CCCCceEEeccccccccCCCC----CccccccccCCCCCCCCCcCCceeecHHHHHHHH-Hhh---CcC
Q 020201 208 LSLLLAKER--PHSQTYLGCMKKGPVFTDPHL----KWYEPQSYLLGKEYFLHAYGPLYALSADVVVSLV-ALK---NNS 277 (329)
Q Consensus 208 L~~~L~~~~--~~~~~y~G~~~~~pv~Rd~~~----Kwyvs~~~y~~~~yp~y~~G~gYvlS~~~v~~l~-~~~---~~~ 277 (329)
|..++.... +...+..|...... .+..+ .+..+..... .....+..|++.++.+++++.+- ... ...
T Consensus 106 l~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~ 182 (255)
T 1qg8_A 106 LLKMVRELDTHPEKAVIYSASKTYH--LNENRDIVKETVRPAAQVT-WNAPCAIDHCSVMHRYSVLEKVKEKFGSYWDES 182 (255)
T ss_dssp HHHHHHHHHHCTTCCEEEEEEEEEE--EC---CEEEEEEECCCSCB-SCCTTTSCGGGEEEETHHHHHHHHHHSSSSCCC
T ss_pred HHHHHHHHHhCCCceEEEeceEEEE--eCCCCcchhhccCchHHHH-HhhcCCCccceEEEEHHHHHhhcccccccccCC
Confidence 888876643 33344445432100 00011 1111111111 12345567899999999999975 330 012
Q ss_pred CCCCCcchHHHHHHHHhCC
Q 020201 278 FRMFSNEDVTIGSWMLAMN 296 (329)
Q Consensus 278 ~~~~~~EDv~iG~~l~~~g 296 (329)
......||..+..-+...|
T Consensus 183 ~~~~~~eD~~~~~r~~~~g 201 (255)
T 1qg8_A 183 PAFYRIGDARFFWRVNHFY 201 (255)
T ss_dssp GGGSTTHHHHHHHHHTTTC
T ss_pred cccchHHHHHHHHHHHHhC
Confidence 2335689999987665555
No 4
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=94.55 E-value=0.98 Score=44.14 Aligned_cols=153 Identities=9% Similarity=0.038 Sum_probs=84.2
Q ss_pred EEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhh
Q 020201 135 AFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAK 214 (329)
Q Consensus 135 ~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~ 214 (329)
.+++|-..+.++.. ....+++..+..+...++. . .-.+.....+....+|++.+|+|..+.++-|..++..
T Consensus 100 EIIvVDDgS~D~t~----~~~~~~~~~v~vi~~~~n~----G-~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~ 170 (501)
T 2ffu_A 100 EIILVDDYSNDPED----GALLGKIEKVRVLRNDRRE----G-LMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLER 170 (501)
T ss_dssp EEEEEECSCSCTHH----HHGGGGBTTEEEEECSSCC----H-HHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHH
T ss_pred eEEEEECCCCchHH----HHHHhcCCCEEEEECCCCc----C-HHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHH
Confidence 55666555555432 2233456666555544331 1 2344555555567899999999999999888888876
Q ss_pred cCCCC-CceEEecc---cccc--------ccC-----CCCCcc-cccc-------ccCCCCCCCCCcCCceeecHHHHHH
Q 020201 215 ERPHS-QTYLGCMK---KGPV--------FTD-----PHLKWY-EPQS-------YLLGKEYFLHAYGPLYALSADVVVS 269 (329)
Q Consensus 215 ~~~~~-~~y~G~~~---~~pv--------~Rd-----~~~Kwy-vs~~-------~y~~~~yp~y~~G~gYvlS~~~v~~ 269 (329)
..... .+..+.+. .... .+. ..-+|. .+.. ........+++.|++.++++++.+.
T Consensus 171 ~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~ 250 (501)
T 2ffu_A 171 VAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEE 250 (501)
T ss_dssp HHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHH
T ss_pred HHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHHHHH
Confidence 43222 23333221 0000 000 000010 0000 0001112356789999999999998
Q ss_pred HHHhhCcCCCCCCcchHHHHHHHHhCCC
Q 020201 270 LVALKNNSFRMFSNEDVTIGSWMLAMNV 297 (329)
Q Consensus 270 l~~~~~~~~~~~~~EDv~iG~~l~~~gV 297 (329)
+-.. ...+..+..||+-+..-+...|.
T Consensus 251 iGgf-de~~~~~g~ED~dl~~Rl~~~G~ 277 (501)
T 2ffu_A 251 LGKY-DMMMDVWGGENLEISFRVWQCGG 277 (501)
T ss_dssp TTCC-CTTCCSSSSHHHHHHHHHHHTTC
T ss_pred hCCC-CccccccCcchHHHHHHHHhcCC
Confidence 8543 23344445899999887777773
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=94.47 E-value=0.86 Score=45.62 Aligned_cols=157 Identities=10% Similarity=0.067 Sum_probs=86.5
Q ss_pred EEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhh
Q 020201 135 AFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAK 214 (329)
Q Consensus 135 ~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~ 214 (329)
.++.|-..+.++.....+++..+++..+..+...++ .+ .-.+.+...+....+|++..|+|+.+.++-|..++..
T Consensus 146 EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~~~n-~G----~~~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~ 220 (570)
T 2d7i_A 146 EIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKKR-EG----LIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDR 220 (570)
T ss_dssp EEEEEECSCCCGGGTHHHHHHHTTSTTEEEEECSSC-CC----HHHHHHHHHHHCCSSEEEECCSSEEECTTCSHHHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHHHhCCeEEEEECCCC-CC----HHHHHHHHHHhcCCCEEEEEcCCccccccHHHHHHHH
Confidence 455555555554434556665667767766554433 22 2333444444457899999999999998887777765
Q ss_pred cCCCCCceE-Eecc---cccc-ccCC--C-----CCcccccc--------ccC---CCCCCCCCcCCceeecHHHHHHHH
Q 020201 215 ERPHSQTYL-GCMK---KGPV-FTDP--H-----LKWYEPQS--------YLL---GKEYFLHAYGPLYALSADVVVSLV 271 (329)
Q Consensus 215 ~~~~~~~y~-G~~~---~~pv-~Rd~--~-----~Kwyvs~~--------~y~---~~~yp~y~~G~gYvlS~~~v~~l~ 271 (329)
........+ +.+. .... .+.. . -.|..... .+. ....-+++.|++.++++++.+.+-
T Consensus 221 l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iG 300 (570)
T 2d7i_A 221 IARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELG 300 (570)
T ss_dssp HHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHHTT
T ss_pred HHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHHhcC
Confidence 432223333 3221 1000 0000 0 00110000 010 111235678999999999999885
Q ss_pred HhhCcCCCCCCcchHHHHHHHHhCCC
Q 020201 272 ALKNNSFRMFSNEDVTIGSWMLAMNV 297 (329)
Q Consensus 272 ~~~~~~~~~~~~EDv~iG~~l~~~gV 297 (329)
.. ...+.....||+-+..=+...|.
T Consensus 301 gf-De~~~~~g~ED~dl~~Rl~~~G~ 325 (570)
T 2d7i_A 301 GY-DPGLEIWGGEQYEISFKVWMCGG 325 (570)
T ss_dssp SS-CTTCCSSSSHHHHHHHHHHHTTC
T ss_pred CC-CCcccccCcchHHHHHHHHhCCC
Confidence 43 23333344799999987777774
No 6
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=93.66 E-value=0.89 Score=46.59 Aligned_cols=116 Identities=18% Similarity=0.057 Sum_probs=69.0
Q ss_pred HHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcC--CCCCceEEecc--ccccccCCCCCccc---------c----
Q 020201 180 AFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKER--PHSQTYLGCMK--KGPVFTDPHLKWYE---------P---- 242 (329)
Q Consensus 180 ~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~--~~~~~y~G~~~--~~pv~Rd~~~Kwyv---------s---- 242 (329)
.+++.+....+++|++..|||+.+.++.|..++.... +...+..|.+. ..+-.-...+.+.. +
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEY 337 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEECTTCCS
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCCCceeeecccEeccccccccccccccc
Confidence 4566665544789999999999999998888876542 22233333431 11100000000000 0
Q ss_pred ---------------ccccCCCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCc
Q 020201 243 ---------------QSYLLGKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 243 ---------------~~~y~~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~ 298 (329)
...+.......|+.|++.++.+++++.+--. . --.+..||+-++.=+.+.|.+
T Consensus 338 ~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgf--d-~~F~~~ED~Dl~lR~~~~G~k 405 (657)
T 4fix_A 338 DHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQP--L-PLFIKWDDADYGLRAAEHGYP 405 (657)
T ss_dssp CEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSC--C-SCSSSSHHHHHHHHHHHTTCC
T ss_pred cccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCC--h-hHhccCcHHHHHHHHHHcCCe
Confidence 0011122334688999999999999987422 2 223467999999888888754
No 7
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=92.83 E-value=6.3 Score=41.12 Aligned_cols=119 Identities=13% Similarity=-0.066 Sum_probs=68.7
Q ss_pred hHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhc--CCCCCceEEecc---ccccccCCC--CCccccccc-cC
Q 020201 176 YKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKE--RPHSQTYLGCMK---KGPVFTDPH--LKWYEPQSY-LL 247 (329)
Q Consensus 176 ~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~--~~~~~~y~G~~~---~~pv~Rd~~--~Kwyvs~~~-y~ 247 (329)
.|.- .++.+.+..+.+|++.+|+|+.+.++.|.+.+... +++-....|... ..|..++.. .+....... |.
T Consensus 225 GKa~-alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (802)
T 4hg6_A 225 AKAG-NMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYG 303 (802)
T ss_dssp HHHH-HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHH
T ss_pred cchH-HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHH
Confidence 4443 45666666689999999999999999988888765 233333333221 111111100 000000000 00
Q ss_pred ------CCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCce
Q 020201 248 ------GKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVNH 299 (329)
Q Consensus 248 ------~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~~ 299 (329)
...-.+++.|++.++.+++++.+-... . ..-.||..++.-+.+.|-+-
T Consensus 304 ~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGgf~-~---~~~~ED~~l~~rl~~~G~ri 357 (802)
T 4hg6_A 304 KIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFA-G---ETITEDAETALEIHSRGWKS 357 (802)
T ss_dssp THHHHHHHTTCCCCCSSSEEEEHHHHHHHTTCC-C---SSSSHHHHHHHHHHTTTCCE
T ss_pred HHHhhHhhcCCceecccchhhhHHHHHHcCCcC-C---CCcchHHHHHHHHHHcCCeE
Confidence 001123467999999999999874322 1 12259999999998887543
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=89.07 E-value=9.2 Score=38.06 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=66.1
Q ss_pred HHHHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCC-CceEEec---cccc--c---------ccC----------
Q 020201 180 AFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHS-QTYLGCM---KKGP--V---------FTD---------- 234 (329)
Q Consensus 180 ~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~-~~y~G~~---~~~p--v---------~Rd---------- 234 (329)
.+++.+.+....+|++..|+|..+.++.|..++......+ ...+|.. .... . .+.
T Consensus 164 ~a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (625)
T 2z86_A 164 AVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQV 243 (625)
T ss_dssp HHHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC-------
T ss_pred HHHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCch
Confidence 4455555556889999999999999988888776643222 2223321 0000 0 000
Q ss_pred -------CCCCccccc----cccC-CCCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchHHHHHHHHhCCCc
Q 020201 235 -------PHLKWYEPQ----SYLL-GKEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 235 -------~~~Kwyvs~----~~y~-~~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~ 298 (329)
....|.... .... ......++.|++.++++++++.+-.. ...+..+..||.-++.=+.+.|.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~~iGgf-de~~~~~g~ED~dl~~Rl~~~G~~ 318 (625)
T 2z86_A 244 AGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWF-DEEFTHWGGEDNEFGYRLYREGCY 318 (625)
T ss_dssp --------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHHHHCCC-CTTCSSCCCHHHHHHHHHHHTTCE
T ss_pred hhhhccCCccccchhhhcccccccccCCceeEEeeceeeeEHHHHHHhCCC-ccccccCCcchhhhhhhHHhCCce
Confidence 000111100 0000 01111347899999999999988433 233333347999999888877743
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=85.79 E-value=13 Score=36.85 Aligned_cols=150 Identities=11% Similarity=0.011 Sum_probs=79.7
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHH
Q 020201 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLL 212 (329)
Q Consensus 133 ~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L 212 (329)
.+.++.|-..+.|. ....+++-.+.+..+..+. .+ |. . .-.+++.+.+....+|++..|+|.++.++.|..++
T Consensus 404 ~~eiivvdd~S~d~-t~~~~~~~~~~~~~i~~~~-~~---n~-G-~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~~~ 476 (625)
T 2z86_A 404 DLEVCICDDGSTDD-TLRILQEHYANHPRVRFIS-QK---NK-G-IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVELCL 476 (625)
T ss_dssp SEEEEEEEESCSSS-HHHHHHHHHTTCTTEEEEE-EC---CC-C-HHHHHHHHHHHCCSSEEEECCTTCEECTTHHHHHH
T ss_pred CeEEEEEECcCChh-HHHHHHHHHhhCCcEEEEe-CC---CC-C-HHHHHHHHHHhcCCCEEEEECCCcccChhHHHHHH
Confidence 34555555544443 3333444345566666554 22 21 1 23445555555688999999999999999998887
Q ss_pred hhc--CCCCCceEEeccccccccCCCCCcccccc---ccCC-CCCCCCCcCCceeecHHHHHHHHHhhCcCCCCCCcchH
Q 020201 213 AKE--RPHSQTYLGCMKKGPVFTDPHLKWYEPQS---YLLG-KEYFLHAYGPLYALSADVVVSLVALKNNSFRMFSNEDV 286 (329)
Q Consensus 213 ~~~--~~~~~~y~G~~~~~pv~Rd~~~Kwyvs~~---~y~~-~~yp~y~~G~gYvlS~~~v~~l~~~~~~~~~~~~~EDv 286 (329)
... .+.-.+..|.... .+..+++..... .+.. ...-.++.|++.++.+++.+.+... ...+...||.
T Consensus 477 ~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ggf---d~~~~~~eD~ 549 (625)
T 2z86_A 477 DEFRKDLSLACVYTTNRN----IDREGNLISNGYNWPIYSREKLTSAMICHHFRMFTARAWNLTEGF---NESISNAVDY 549 (625)
T ss_dssp HHHHHCTTCSEEEEEEEE----ECTTSCEEEECCCCSSCCHHHHTTSCCCCSCEEEEHHHHTTTTCC---CSSCSSCHHH
T ss_pred HHHHhCCCeeEEEeeeEE----ECCCCCEeccCcccccCCHHHHhhcccCCceEEEEHHHHHHhCCC---CCccCChHHH
Confidence 654 2222233332210 011111110000 0110 1112345677889999887665332 1223367999
Q ss_pred HHHHHHHhCC
Q 020201 287 TIGSWMLAMN 296 (329)
Q Consensus 287 ~iG~~l~~~g 296 (329)
-+..-+.+.|
T Consensus 550 dl~~r~~~~g 559 (625)
T 2z86_A 550 DMYLKLSEVG 559 (625)
T ss_dssp HHHHHHTTTS
T ss_pred HHHHHHHHhC
Confidence 9987666666
No 10
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=79.02 E-value=22 Score=29.92 Aligned_cols=156 Identities=11% Similarity=0.114 Sum_probs=79.5
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHhhCCCEEEeccccccCCchhHHHHHHHHHhhcCCcceEEEeCCceEEcHHHHHHHH
Q 020201 133 GLAFRFIIGRTNDQSKMAELRKEVAEYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLL 212 (329)
Q Consensus 133 ~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI~~d~~D~y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L 212 (329)
.+.++.|-..+.+. ....+++-.+++..+..+. .+ |. . .-.+.+.+.+....+|++.+|+|.++.++.|..++
T Consensus 34 ~~eiIvvDd~S~d~-t~~~~~~~~~~~~~i~~i~-~~---n~-G-~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l~ 106 (240)
T 3bcv_A 34 DIEIILIDDESPDN-CPKICDDYAAQYPNIKVIH-KK---NA-G-LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMTMY 106 (240)
T ss_dssp SEEEEEEECCCSSS-HHHHHHHHHHHCSSEEEEE-CC---CC-C-HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHHHH
T ss_pred CeEEEEEECCCCcC-HHHHHHHHHhhCCCEEEEE-CC---CC-C-hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHHHH
Confidence 34556555444442 3334444455677776664 22 21 1 23445555555678999999999999999888877
Q ss_pred hhcCC-CCCceEEec-c---cc----ccccCC-CCCcccccc--ccCCCCC---C-------CCCcCCceeecHHHHHHH
Q 020201 213 AKERP-HSQTYLGCM-K---KG----PVFTDP-HLKWYEPQS--YLLGKEY---F-------LHAYGPLYALSADVVVSL 270 (329)
Q Consensus 213 ~~~~~-~~~~y~G~~-~---~~----pv~Rd~-~~Kwyvs~~--~y~~~~y---p-------~y~~G~gYvlS~~~v~~l 270 (329)
..... ...+..|.. . .+ .+.+.. ...++.... .+....+ + ....|++.++.+++++.+
T Consensus 107 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 186 (240)
T 3bcv_A 107 NVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIASDPYAREERAIQVSAKVVLYRRNLIEKK 186 (240)
T ss_dssp HHHHHHTCSEEEC--------------------CEEECSHHHHHHHHGGGTSSCHHHHHHHHHHHTCSCEEEEHHHHHHT
T ss_pred HHHHhcCCCEEEEeeEEEccCCccccccccccccccccCHHHHHHHHHHHhhcchhhccccccccchhheeeeHHHHHHc
Confidence 65432 233433322 1 11 110000 001111000 0000000 0 013477889999999985
Q ss_pred H-HhhCcCCCCCCcchHHHHHHHHhCCC
Q 020201 271 V-ALKNNSFRMFSNEDVTIGSWMLAMNV 297 (329)
Q Consensus 271 ~-~~~~~~~~~~~~EDv~iG~~l~~~gV 297 (329)
- ... ... .+..||..++.-+...|-
T Consensus 187 g~~f~-~~~-~~~~eD~~~~~r~~~~g~ 212 (240)
T 3bcv_A 187 HLRFV-SER-ILPSEDLIFNVDVLANSN 212 (240)
T ss_dssp TCCCC-CTT-TCTTHHHHHHHHHHTTCS
T ss_pred CCccC-CCC-CccCCCHHHHHHHHHhCC
Confidence 3 221 211 234699999987776653
No 11
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=43.06 E-value=2.2e+02 Score=26.83 Aligned_cols=164 Identities=11% Similarity=-0.043 Sum_probs=86.3
Q ss_pred cEEEEEeccCCCHHH--HHHHHHHHh-hCCC-EEEecccc-c--cCCchhHHHHHHHHHhhcCCcceEEEeCCceE-EcH
Q 020201 134 LAFRFIIGRTNDQSK--MAELRKEVA-EYDD-FILLDIEE-E--YSKLPYKTLAFFKAAYALYDSEFYVKADDDIY-LRP 205 (329)
Q Consensus 134 i~~~FvvG~~~~~~~--~~~l~~E~~-~~~D-iI~~d~~D-~--y~nlt~Ktl~~l~w~~~~~~~~fvlK~DDD~~-Vn~ 205 (329)
..+++|-+-+.|... ..++.++.. .++. ++..-... . -.....=+.++++|+.+..+.++++.+|.|.- .++
T Consensus 29 ~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P 108 (397)
T 2bo4_A 29 VHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGP 108 (397)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCH
T ss_pred eEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCH
Confidence 467888887777532 232333433 3443 33332120 1 13444557788888874457899999999994 788
Q ss_pred HHHHHHHhhcCCCCCceEEeccc---cccccCCCCCccccccccCCC--CCCCCCcCCceeecHHHHHHHHHhhC-cCCC
Q 020201 206 DRLSLLLAKERPHSQTYLGCMKK---GPVFTDPHLKWYEPQSYLLGK--EYFLHAYGPLYALSADVVVSLVALKN-NSFR 279 (329)
Q Consensus 206 ~~L~~~L~~~~~~~~~y~G~~~~---~pv~Rd~~~Kwyvs~~~y~~~--~yp~y~~G~gYvlS~~~v~~l~~~~~-~~~~ 279 (329)
+.+.+++......-.+..|.... +....+...++... ..|+.. .......++.+++++++++.+..... ....
T Consensus 109 ~~i~~Ll~~l~~g~D~V~g~~~r~~~~~~~~~~~~~~ll~-~~~~~~~~~~i~dp~sG~~a~~R~vl~~l~~~~~~~~~~ 187 (397)
T 2bo4_A 109 DWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFA-LLWPHTELSWIEQPLGGELLMRREVAAMLYEDERVRRRS 187 (397)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHH-HHCTTSSGGGCSCTTCCCEEEEHHHHHHHHHCHHHHTCC
T ss_pred HHHHHHHHHHHcCCCEEEEEeccccCCcHHHHHHHHHHHH-HHHHHhhccccccCCcccEEEeHHHHHHHhhhcccCcCC
Confidence 87777776543233455665311 11000000000000 012210 01223346778999999999854210 1122
Q ss_pred CCCcchHHHHHHHHhCCCce
Q 020201 280 MFSNEDVTIGSWMLAMNVNH 299 (329)
Q Consensus 280 ~~~~EDv~iG~~l~~~gV~~ 299 (329)
.+ -.|+.+...+.+.|.+-
T Consensus 188 ~f-g~eiel~~~a~~~G~rI 206 (397)
T 2bo4_A 188 DW-GIDTLYTFVTVQQGVSI 206 (397)
T ss_dssp ST-THHHHHHHHHHHTTCCE
T ss_pred Cc-chHHHHHHHHHHcCCEE
Confidence 23 34788877777766543
No 12
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=36.41 E-value=59 Score=30.27 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=43.7
Q ss_pred HHHHHhhcCCcceEEEeCCceEEcHHHHHHH---HhhcCCCCCceEEe-ccc-ccccc-CCCCCccccccccCCCCCCCC
Q 020201 181 FFKAAYALYDSEFYVKADDDIYLRPDRLSLL---LAKERPHSQTYLGC-MKK-GPVFT-DPHLKWYEPQSYLLGKEYFLH 254 (329)
Q Consensus 181 ~l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~---L~~~~~~~~~y~G~-~~~-~pv~R-d~~~Kwyvs~~~y~~~~yp~y 254 (329)
++.++-+..+.++++.+|||+.+.++=+.-. +......+.+++=. .+. +.... +.. .+...| .-.|
T Consensus 90 al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~ISa~n~~g~~~~~~~~----~~~~ly----rs~~ 161 (343)
T 1fo8_A 90 ALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDNGKEQMVDSS----KPELLY----RTDF 161 (343)
T ss_dssp HHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEESCCTTCBGGGSCTT----CTTCEE----EESS
T ss_pred HHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEEEecccCcccccccccc----CcceEE----eecC
Confidence 3344433347999999999999998766333 33223344554211 111 11000 000 011111 1234
Q ss_pred CcCCceeecHHHHHHH
Q 020201 255 AYGPLYALSADVVVSL 270 (329)
Q Consensus 255 ~~G~gYvlS~~~v~~l 270 (329)
..|.|+.+++++-+.+
T Consensus 162 f~~wGWa~wr~~W~e~ 177 (343)
T 1fo8_A 162 FPGLGWLLLAELWAEL 177 (343)
T ss_dssp CCCSSEEEEHHHHHHH
T ss_pred CCchhhhhcHHHHHHH
Confidence 5588999999998865
No 13
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=26.66 E-value=1.2e+02 Score=23.67 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=35.3
Q ss_pred EeCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCEE
Q 020201 100 IQTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFI 163 (329)
Q Consensus 100 V~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI 163 (329)
|.|-.+..+-|..||+-|-.... +.++-++ .+.+.++.....+|+++-|=-+
T Consensus 55 vrtvedkedfrenireiwerypq-----------ldvvviv-ttddkewikdfieeakergvev 106 (162)
T 2l82_A 55 VRTVEDKEDFRENIREIWERYPQ-----------LDVVVIV-TTDDKEWIKDFIEEAKERGVEV 106 (162)
T ss_dssp EEECCSHHHHHHHHHHHHHHCTT-----------CCEEEEE-ECCCHHHHHHHHHHHHHTTCEE
T ss_pred eeeeccHHHHHHHHHHHHHhCCC-----------CcEEEEE-ecCcHHHHHHHHHHHHhcCcEE
Confidence 45656667789999999988742 2344443 4566777777778887777533
No 14
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=24.77 E-value=15 Score=37.42 Aligned_cols=109 Identities=10% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHhhcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEecc----ccccccC---CCCCccccccccCCCCCCCC
Q 020201 182 FKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMK----KGPVFTD---PHLKWYEPQSYLLGKEYFLH 254 (329)
Q Consensus 182 l~w~~~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~----~~pv~Rd---~~~Kwyvs~~~y~~~~yp~y 254 (329)
.+.+.+....+|++.+|+|.++.++.|..++.... ...+.+|... ..+...+ ....|+. ....+. .+...
T Consensus 75 rN~gi~~A~gdyI~flD~Dd~~~p~~l~~l~~~l~-~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~ 151 (729)
T 3l7i_A 75 RNIALEEVETPYFMFLDADDELASYAITFYLEKFN-NTDGLIAPIHSFTTQRPQFVDLDRVRVEYFN-AKENIN-SFLRK 151 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhccCCEEEEECCCCCCChhHHHHHHHHhc-CCCEEEEeeEEeecCCCccccccceeeeeec-chhhHH-HHhhc
Confidence 33444445789999999999999998888887765 3334333321 1111000 0011111 111111 11123
Q ss_pred CcCCceeecHHHHHHHH-HhhCcCCCCCCcchHHHHHHHHhCC
Q 020201 255 AYGPLYALSADVVVSLV-ALKNNSFRMFSNEDVTIGSWMLAMN 296 (329)
Q Consensus 255 ~~G~gYvlS~~~v~~l~-~~~~~~~~~~~~EDv~iG~~l~~~g 296 (329)
+.|++.++.+++++.+- ... .. ....||..+..-+...|
T Consensus 152 ~~~~~~~~rr~~l~~~gl~fd-e~--~~~~ED~d~~~rl~~~g 191 (729)
T 3l7i_A 152 QSACNIIFRTAIVRAHHIRFN-EN--LNTYVDWSFVLEYMKYV 191 (729)
T ss_dssp -------------------------------------------
T ss_pred cchhheeeeHHHHHHcCCCcC-CC--CCcccCHHHHHHHHHhc
Confidence 45677888888888753 221 21 23589998875544443
No 15
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=21.80 E-value=2.3e+02 Score=20.77 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=38.3
Q ss_pred eCCCCCHHHHHHHHHHhccCCccchhhhhccCCcEEEEEeccCCCHHHHHHHHHHHhhCCCEE-EeccccccCCchhHHH
Q 020201 101 QTGFGSGGRRRSLRMTWMPSDHQGLQQLEEATGLAFRFIIGRTNDQSKMAELRKEVAEYDDFI-LLDIEEEYSKLPYKTL 179 (329)
Q Consensus 101 ~S~~~~~~rR~~IR~TW~~~~~~~l~~l~~~~~i~~~FvvG~~~~~~~~~~l~~E~~~~~DiI-~~d~~D~y~nlt~Ktl 179 (329)
.|+.++.+.|+.|...=-+. .-.++||-|.+.+ ...+.+.|+++-|=-. .+.-.| -+.|+..+-
T Consensus 32 rtatssqdirdiiksmkdng------------kplvvfvngasqn--dvnefqneakkegvsydvlkstd-peeltqrvr 96 (112)
T 2lnd_A 32 RTATSSQDIRDIIKSMKDNG------------KPLVVFVNGASQN--DVNEFQNEAKKEGVSYDVLKSTD-PEELTQRVR 96 (112)
T ss_dssp EEECSHHHHHHHHHHHTTCC------------SCEEEEECSCCHH--HHHHHHHHHHHHTCEEEEEECCC-HHHHHHHHH
T ss_pred eeccchhhHHHHHHHHHhcC------------CeEEEEecCcccc--cHHHHHHHHHhcCcchhhhccCC-HHHHHHHHH
Confidence 44455566677666543222 2256899887643 2345566666555221 111122 245777777
Q ss_pred HHHHHHhh
Q 020201 180 AFFKAAYA 187 (329)
Q Consensus 180 ~~l~w~~~ 187 (329)
.+++-+-.
T Consensus 97 eflktags 104 (112)
T 2lnd_A 97 EFLKTAGS 104 (112)
T ss_dssp HHHHHTTS
T ss_pred HHHHhccc
Confidence 77776543
No 16
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=20.84 E-value=4.4e+02 Score=23.28 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=51.9
Q ss_pred hcCCcceEEEeCCceEEcHHHHHHHHhhcCCCCCceEEeccccccccCCCCCccccccccCCCCCCCCCcCCceeecHHH
Q 020201 187 ALYDSEFYVKADDDIYLRPDRLSLLLAKERPHSQTYLGCMKKGPVFTDPHLKWYEPQSYLLGKEYFLHAYGPLYALSADV 266 (329)
Q Consensus 187 ~~~~~~fvlK~DDD~~Vn~~~L~~~L~~~~~~~~~y~G~~~~~pv~Rd~~~Kwyvs~~~y~~~~yp~y~~G~gYvlS~~~ 266 (329)
+....+|++.+|+|+.+.++.+.. . ....+..++ +......|. ..| ....|+..++.+++
T Consensus 126 ~~A~gd~i~flD~D~i~~~d~~~~---~-~~~~p~~~~--------------~~~~~~~~~-~~~-~~~~G~~~~~rr~~ 185 (287)
T 2fy7_A 126 KDYDYTCFVFSDVDLIPMNDHNAY---R-CFSQPRHIS--------------VAMDKFGFS-LPY-VQYFGGVSALSKQQ 185 (287)
T ss_dssp HHSCCCEEEEECTTEEESBTTSCC---S-CCSSCEECC--------------CEEGGGTTS-CSS-TTCCCSEEEEEHHH
T ss_pred HhCCCCEEEEECCCcccCCCcceE---e-cCCCCceEE--------------EeecccccC-CCc-CceeeeEEEEEHHH
Confidence 456889999999999999885210 0 000000000 000000111 012 23458899999999
Q ss_pred HHHHHHhhCcCCCCCCcchHHHHHHHHhCCCc
Q 020201 267 VVSLVALKNNSFRMFSNEDVTIGSWMLAMNVN 298 (329)
Q Consensus 267 v~~l~~~~~~~~~~~~~EDv~iG~~l~~~gV~ 298 (329)
...+--. ...+..+..||+-++.=+...|.+
T Consensus 186 f~~vgGF-de~~~g~g~ED~Dl~~Rl~~~G~~ 216 (287)
T 2fy7_A 186 FLTINGF-PNNYWGWGGEDDDIFNRLVFRGMS 216 (287)
T ss_dssp HHHTTSC-CSCCSSCSCHHHHHHHHHHHTTCC
T ss_pred HHHcCCC-CccccccccchHHHHHHHHHcCCe
Confidence 8887433 233334457999998777777643
Done!