BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020203
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 284 bits (727), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 208/312 (66%), Gaps = 6/312 (1%)
Query: 23 DLCNPNDKKVLLKFKKSLNNPYVLASWNPKTDCCD--WYCVTCDLTTN--RINSLTIFAG 78
+LCNP DK+ LL+ KK L NP L+SW P TDCC+ W V CD T R+N+L +
Sbjct: 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 79 DLPGQ--IPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDF 136
+LP IP + +LPYL L + +L GPI PAIAKL L L I+ TN+SG +PDF
Sbjct: 61 NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120
Query: 137 ISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLY 196
+SQ+ L L+ S+N LSGT+P S+S L L + D N+++G+IP+S+G+F+ +
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 197 LSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKV 256
+S N+L+GKIP + +++ +DLSRN LEGDAS LFG +K TQ+I +++N L F+L KV
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 257 EFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFH 316
++L LDL +N+I+G++P +T L+ L LNVS+N LCG IP GG LQ F + Y +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300
Query: 317 NRCLCGAPLESC 328
N+CLCG+PL +C
Sbjct: 301 NKCLCGSPLPAC 312
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 138/307 (44%), Gaps = 48/307 (15%)
Query: 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTN 128
++ L ++ L G+IP E+ + LETL+ LTG I ++ NL + +S
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLIL-DFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 129 ISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTF 188
++G +P +I +L NL L+LS N+ SG IP L + L L L+ N G+IP +
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 189 TGSIPD--------LYLSHNQLSGKIPASLGSMDFNTI--------------DLSRNKLE 226
+G I +Y+ ++ + + + ++F I +++
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 227 GDASFLFGLNKTTQRIDVSRNLLE---------------FNLSKVEFPQSLTN------- 264
G S F N + +D+S N+L NL + S+ +
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 265 ---LDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLC 321
LDL+ NK+ G IP +++L L +++S N L GPIP G+ ++F ++ +N LC
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741
Query: 322 GAPLESC 328
G PL C
Sbjct: 742 GYPLPRC 748
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 106/208 (50%), Gaps = 9/208 (4%)
Query: 79 DLPGQIPPEVGDLPYLETLMFHKLPS--LTGPIQPAIAK--LKNLKTLRISWTNISGPVP 134
+ G++P + +L +L+ L S +GPI P + + L+ L + +G +P
Sbjct: 354 EFSGELPESLTNLS--ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 135 DFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPD 194
+S + L L LSFN LSGTIP SL L KL L L N L G IP+ + ++
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLET 470
Query: 195 LYLSHNQLSGKIPASLGS-MDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNL 253
L L N L+G+IP+ L + + N I LS N+L G+ G + + +S N N+
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 254 -SKVEFPQSLTNLDLNHNKIFGSIPAQI 280
+++ +SL LDLN N G+IPA +
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 112/281 (39%), Gaps = 90/281 (32%)
Query: 105 LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTN-LTFLELSFNNLSGTIP----- 158
GPI P LK+L+ L ++ +G +PDF+S + LT L+LS N+ G +P
Sbjct: 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 159 --------------------GSLSKLQKLGALHLDRNKLTGSIPESF------------- 185
+L K++ L L L N+ +G +PES
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 186 ---------------------------GTFTGSIP----------DLYLSHNQLSGKIPA 208
FTG IP L+LS N LSG IP+
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 209 SLGSMD-FNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTN--- 264
SLGS+ + L N LEG+ KT + + +L+FN E P L+N
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL-----ILDFNDLTGEIPSGLSNCTN 491
Query: 265 ---LDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV 302
+ L++N++ G IP I LENL L +S N G IP
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 105 LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKL 164
TG I P ++ L +L +S+ +SG +P + L+ L L+L N L G IP L +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 165 QKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSMD-FNTIDLSRN 223
+ L L LD N LTG IP T ++ + LS+N+L+G+IP +G ++ + LS N
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 224 KLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQS 261
G+ G ++ +D++ NL + F QS
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 124 ISWTNISGPVPDFISQLTNLTFLELSFNNLSG--TIPGSLSKLQKLGALHLDRNKLTGSI 181
+S ++I+G V F +LT L+LS N+LSG T SL L L++ N L
Sbjct: 84 LSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 182 PESFGTFTGSIPDLYLSHNQLSGKIPA----SLGSMDFNTIDLSRNKLEGDASFLFGLNK 237
S G S+ L LS N +SG S G + + +S NK+ GD +N
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN- 201
Query: 238 TTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLC 297
+ +DVS N + + +L +LD++ NK+ G I++ L LN+S N+
Sbjct: 202 -LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 298 GPIP 301
GPIP
Sbjct: 261 GPIP 264
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 138/307 (44%), Gaps = 48/307 (15%)
Query: 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTN 128
++ L ++ L G+IP E+ + LETL+ LTG I ++ NL + +S
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLIL-DFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 129 ISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTF 188
++G +P +I +L NL L+LS N+ SG IP L + L L L+ N G+IP +
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558
Query: 189 TGSIPD--------LYLSHNQLSGKIPASLGSMDFNTI--------------DLSRNKLE 226
+G I +Y+ ++ + + + ++F I +++
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 227 GDASFLFGLNKTTQRIDVSRNLLE---------------FNLSKVEFPQSLTN------- 264
G S F N + +D+S N+L NL + S+ +
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 265 ---LDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLC 321
LDL+ NK+ G IP +++L L +++S N L GPIP G+ ++F ++ +N LC
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 738
Query: 322 GAPLESC 328
G PL C
Sbjct: 739 GYPLPRC 745
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 106/208 (50%), Gaps = 9/208 (4%)
Query: 79 DLPGQIPPEVGDLPYLETLMFHKLPS--LTGPIQPAIAK--LKNLKTLRISWTNISGPVP 134
+ G++P + +L +L+ L S +GPI P + + L+ L + +G +P
Sbjct: 351 EFSGELPESLTNLS--ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 135 DFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPD 194
+S + L L LSFN LSGTIP SL L KL L L N L G IP+ + ++
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLET 467
Query: 195 LYLSHNQLSGKIPASLGS-MDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNL 253
L L N L+G+IP+ L + + N I LS N+L G+ G + + +S N N+
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 254 -SKVEFPQSLTNLDLNHNKIFGSIPAQI 280
+++ +SL LDLN N G+IPA +
Sbjct: 528 PAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 112/281 (39%), Gaps = 90/281 (32%)
Query: 105 LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTN-LTFLELSFNNLSGTIP----- 158
GPI P LK+L+ L ++ +G +PDF+S + LT L+LS N+ G +P
Sbjct: 256 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 159 --------------------GSLSKLQKLGALHLDRNKLTGSIPESF------------- 185
+L K++ L L L N+ +G +PES
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 186 ---------------------------GTFTGSIP----------DLYLSHNQLSGKIPA 208
FTG IP L+LS N LSG IP+
Sbjct: 374 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 209 SLGSMD-FNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTN--- 264
SLGS+ + L N LEG+ KT + + +L+FN E P L+N
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL-----ILDFNDLTGEIPSGLSNCTN 488
Query: 265 ---LDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV 302
+ L++N++ G IP I LENL L +S N G IP
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 105 LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKL 164
TG I P ++ L +L +S+ +SG +P + L+ L L+L N L G IP L +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 165 QKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSMD-FNTIDLSRN 223
+ L L LD N LTG IP T ++ + LS+N+L+G+IP +G ++ + LS N
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 224 KLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQS 261
G+ G ++ +D++ NL + F QS
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 124 ISWTNISGPVPDFISQLTNLTFLELSFNNLSG--TIPGSLSKLQKLGALHLDRNKLTGSI 181
+S ++I+G V F +LT L+LS N+LSG T SL L L++ N L
Sbjct: 81 LSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 182 PESFGTFTGSIPDLYLSHNQLSGKIPA----SLGSMDFNTIDLSRNKLEGDASFLFGLNK 237
S G S+ L LS N +SG S G + + +S NK+ GD +N
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN- 198
Query: 238 TTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLC 297
+ +DVS N + + +L +LD++ NK+ G I++ L LN+S N+
Sbjct: 199 -LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 298 GPIP 301
GPIP
Sbjct: 258 GPIP 261
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 170 LHLD--RNKLTGSIPESFGTFTGSIPDLYLSHNQLS--GKIPA------SLGSMDFNTID 219
LHLD N LT ++ E+ G T + L L NQL KI SL +D +
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 220 LSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQ 279
+S ++ +GD S+ K+ +++S N+L + + P + LDL+ NKI SIP Q
Sbjct: 386 VSYDEKKGDCSW----TKSLLSLNMSSNILTDTIFRC-LPPRIKVLDLHSNKI-KSIPKQ 439
Query: 280 ITSLENLGFLNVSYNRLCG-PIPVGGKLQSFGYTEYFHNRCLCGAP 324
+ LE L LNV+ N+L P + +L S N C P
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 90 DLPYLETLMF--HKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147
+L LETL +KL +L PI +L NL LR+ + P LT LT+L
Sbjct: 83 ELKNLETLWVTDNKLQAL--PI-GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIP 207
L +N L G KL L L L N+L +PE + L L +NQL ++P
Sbjct: 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVP 197
Query: 208 ASLGSMD 214
G+ D
Sbjct: 198 E--GAFD 202
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 8/142 (5%)
Query: 62 TCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKT 121
+C+ N ++ + +P IP + L L++ LPS A +L L+
Sbjct: 13 SCNNNKNSVDCSSKKLTAIPSNIPADTKKLD-LQSNKLSSLPS------KAFHRLTKLRL 65
Query: 122 LRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSI 181
L ++ + +L NL L ++ N L G +L L L LDRN+L
Sbjct: 66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP 125
Query: 182 PESFGTFTGSIPDLYLSHNQLS 203
P F + T + L L +N+L
Sbjct: 126 PRVFDSLT-KLTYLSLGYNELQ 146
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Query: 135 DFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPD 194
DF L NL L L N +S PG+ + L KL L+L +N+L +PE ++ +
Sbjct: 71 DF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQE 125
Query: 195 LYLSHNQLSGKIPASL--GSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFN 252
L + N+++ K+ S+ G ++L N L+ + G + +++ R + + N
Sbjct: 126 LRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIR-IADTN 182
Query: 253 LSKVE--FPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCG 298
++ + P SLT L L+ NKI A + L NL L +S+N +
Sbjct: 183 ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 140 LTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSH 199
L NL L LSFN++S GSL+ L LHL+ NKL +P I +YL +
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK-YIQVVYLHN 272
Query: 200 NQLSGKIPASLGSMDF 215
N +S ++GS DF
Sbjct: 273 NNIS-----AIGSNDF 283
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Query: 135 DFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPD 194
DF L NL L L N +S PG+ + L KL L+L +N+L +PE ++ +
Sbjct: 71 DF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQE 125
Query: 195 LYLSHNQLSGKIPASL--GSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFN 252
L + N+++ K+ S+ G ++L N L+ + G + +++ R + + N
Sbjct: 126 LRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIR-IADTN 182
Query: 253 LSKVE--FPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCG 298
++ + P SLT L L+ NKI A + L NL L +S+N +
Sbjct: 183 ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 140 LTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSH 199
L NL L LSFN++S GSL+ L LHL+ NKL +P I +YL +
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK-YIQVVYLHN 272
Query: 200 NQLSGKIPASLGSMDF 215
N +S ++GS DF
Sbjct: 273 NNIS-----AIGSNDF 283
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 87 EVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFL 146
E+ +L YL L ++L SL + KL NLK L + + +LTNLT+L
Sbjct: 83 ELTNLTYL-ILTGNQLQSLPNGV---FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 147 ELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQL 202
L N L G KL L L LD N+L S+PE + L L+ NQL
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQL 193
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 30/169 (17%)
Query: 137 ISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLY 196
+ +LTNLT+L L+ N L G KL L L L N+L S+P+ ++ LY
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLY 139
Query: 197 LSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK 255
L HNQL + + +DL N+L+ +F +K TQ
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF--DKLTQ--------------- 182
Query: 256 VEFPQSLTNLDLNHNKIFGSIP----AQITSLENLGFLNVSYNRLCGPI 300
L L LN N++ S+P ++TSL ++ LN ++ C I
Sbjct: 183 ------LKQLSLNDNQL-KSVPDGVFDRLTSLTHIWLLNNPWDCACSDI 224
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 61 VTCDLTTNRINSL-TIFAGDLPGQIPPEVGDLPYLETLMF--HKLPSLTGPIQPAIAKLK 117
VT +T N +NS+ I A + + + LP + L +KL ++ A+ +L
Sbjct: 31 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-----ALKELT 85
Query: 118 NLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKL 177
NL L ++ + +LTNL L L N L G KL L L+L N+L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL 145
Query: 178 TGSIPESFGTFTGSIPDLYLSHNQLSG 204
S+P+ ++ L L +NQL
Sbjct: 146 Q-SLPKGVFDKLTNLTRLDLDNNQLQS 171
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 119 LKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLT 178
L TL +S + +P L LT L++SFN L+ G+L L +L L+L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 179 GSIPESFGTFTGSIPDLYLSHNQLSGKIPASL--GSMDFNTIDLSRNKLEGDASFLFG 234
++P T T + L L++NQL+ ++PA L G + +T+ L N L FG
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 119 LKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLT 178
L TL +S + +P L LT L++SFN L+ G+L L +L L+L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 179 GSIPESFGTFTGSIPDLYLSHNQLSGKIPASL--GSMDFNTIDLSRNKLEGDASFLFG 234
++P T T + L L++NQL+ ++PA L G + +T+ L N L FG
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 119 LKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLT 178
L TL +S + +P L LT L++SFN L+ G+L L +L L+L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 179 GSIPESFGTFTGSIPDLYLSHNQLSGKIPASL--GSMDFNTIDLSRNKLEGDASFLFG 234
++P T T + L L++NQL+ ++PA L G + +T+ L N L FG
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 119 LKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLT 178
L TL +S + +P L LT L++SFN L+ G+L L +L L+L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 179 GSIPESFGTFTGSIPDLYLSHNQLSGKIPASL--GSMDFNTIDLSRNKLEGDASFLFG 234
++P T T + L L++NQL+ ++PA L G + +T+ L N L FG
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 21/129 (16%)
Query: 116 LKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRN 175
LK+LK L +++ I+ + L NL L LS+N L + L K+ + L +N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 176 KLTGSIPESFG------------------TFTGSIPDLYLSHNQLSGKIPASLGSMDFNT 217
+ ++F F SIPD++LS N+L +L + N
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA---NL 405
Query: 218 IDLSRNKLE 226
I LS N+LE
Sbjct: 406 IHLSENRLE 414
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 122 LRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSI 181
L+++W + D L++L L L+ N L+ PG S L L L L+ N+LT
Sbjct: 463 LQLAWE--TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--- 517
Query: 182 PESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGD---ASFLFGLNKT 238
S ++ L +S NQL P S+ + +D++ NK + ++F+ LN T
Sbjct: 518 VLSHNDLPANLEILDISRNQLLAPNPDVFVSL--SVLDITHNKFICECELSTFINWLNHT 575
Query: 239 TQRI 242
I
Sbjct: 576 NVTI 579
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 119 LKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLT 178
L TL +S + +P L LT L++SFN L+ G+L L +L L+L N+L
Sbjct: 80 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 179 GSIPESFGTFTGSIPDLYLSHNQLSGKIPASL--GSMDFNTIDLSRNKLEGDASFLFG 234
++P T T + L L++N L+ ++PA L G + +T+ L N L FG
Sbjct: 139 -TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 194
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 62 TCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKT 121
T DL+ N++ SL + LP +V F++L SL P+ A+ L L+
Sbjct: 82 TLDLSHNQLQSLPLLGQTLPALTVLDVS---------FNRLTSL--PLG-ALRGLGELQE 129
Query: 122 LRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSI 181
L + + P ++ L L L+ NNL+ G L+ L+ L L L N L +I
Sbjct: 130 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 188
Query: 182 PESF 185
P+ F
Sbjct: 189 PKGF 192
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 115 KLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDR 174
KL NL L ++ + +LTNLT L+LS+N L G KL +L L L +
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 175 NKLTGSIPESFGTFTGSIPDLYLSHN 200
N+L S+P+ S+ ++L N
Sbjct: 191 NQLK-SVPDGVFDRLTSLQYIWLHDN 215
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 137 ISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLY 196
+ +LTNLT+L L+ N L G KL L L L N+L S+P+ ++ L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLN 139
Query: 197 LSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDV 244
L+HNQL + + +DLS N+L+ +F +K TQ D+
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF--DKLTQLKDL 186
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 9/146 (6%)
Query: 61 VTCDLTTNRINSL-TIFAGDLPGQIPPEVGDLPYLETLMF--HKLPSLTGPIQPAIAKLK 117
VT +T N +NS+ I A + + + LP + L +KL ++ A+ +L
Sbjct: 31 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-----ALKELT 85
Query: 118 NLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKL 177
NL L ++ + +LTNL L L N L G KL L L+L N+L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145
Query: 178 TGSIPESFGTFTGSIPDLYLSHNQLS 203
S+P+ ++ +L LS+NQL
Sbjct: 146 Q-SLPKGVFDKLTNLTELDLSYNQLQ 170
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 26/186 (13%)
Query: 141 TNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHN 200
++ TFL + N + ++ S L++L L L RN L + T
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT------------- 399
Query: 201 QLSGKIPASLGSMDFNTIDLSRNKLEGDA-SFLFGLNKTTQRIDVSRNLLEFNLSKVEFP 259
++ S++ T+D+S N L A ++ +++S N+L ++ + P
Sbjct: 400 -------KNMSSLE--TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-LP 449
Query: 260 QSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCG-PIPVGGKLQSFGYTEYFHNR 318
+ LDL++N+I SIP +T L+ L LNV+ N+L P V +L S Y N
Sbjct: 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
Query: 319 CLCGAP 324
C P
Sbjct: 509 WDCTCP 514
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 119 LKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLT 178
L TL +S + +P L LT L++SFN L+ G+L L +L L+L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 179 GSIPESFGTFTGSIPDLYLSHNQLSGKIPASL--GSMDFNTIDLSRNKLEGDASFLFG 234
++P T T + L L++N L+ ++PA L G + +T+ L N L FG
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 62 TCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKT 121
T DL+ N++ SL + LP +V F++L SL P+ A+ L L+
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVS---------FNRLTSL--PLG-ALRGLGELQE 128
Query: 122 LRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSI 181
L + + P ++ L L L+ N+L+ G L+ L+ L L L N L +I
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 182 PESF 185
P+ F
Sbjct: 188 PKGF 191
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 107/247 (43%), Gaps = 55/247 (22%)
Query: 113 IAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHL 172
+A L NL L + I+ P + LTNL LELS N +S +LS L L L+
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNF 158
Query: 173 DRNKLTGSIP-------ESFGTFTGSIPD------------LYLSHNQLSGKIP------ 207
N++T P E + + D L ++NQ+S P
Sbjct: 159 SSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 208 --------------ASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFN 252
+L S+ + +DL+ N++ A L GL K T+ + + N + N
Sbjct: 219 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE-LKLGANQIS-N 275
Query: 253 LSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGG--KLQSFG 310
+S + +LTNL+LN N++ P I++L+NL +L + +N + PV KLQ
Sbjct: 276 ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL- 332
Query: 311 YTEYFHN 317
+F+N
Sbjct: 333 ---FFYN 336
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 137 ISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLY 196
IS L NLT+L L FNN+S P +S L KL L NK+ S S T +I L
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLT-NINWLS 355
Query: 197 LSHNQLSGKIP 207
HNQ+S P
Sbjct: 356 AGHNQISDLTP 366
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 119 LKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLT 178
L TL +S + +P L LT L++SFN L+ G+L L +L L+L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 179 GSIPESFGTFTGSIPDLYLSHNQLSGKIPASL--GSMDFNTIDLSRNKLEGDASFLFG 234
++P T T + L L++N L+ ++PA L G + +T+ L N L FG
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 62 TCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKT 121
T DL+ N++ SL + LP +V F++L SL P+ A+ L L+
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVS---------FNRLTSL--PLG-ALRGLGELQE 128
Query: 122 LRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSI 181
L + + P ++ L L L+ NNL+ G L+ L+ L L L N L +I
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 182 PESF 185
P+ F
Sbjct: 188 PKGF 191
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 119 LKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLT 178
L TL +S + +P L LT L++SFN L+ G+L L +L L+L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 179 GSIPESFGTFTGSIPDLYLSHNQLSGKIPASL--GSMDFNTIDLSRNKLEGDASFLFG 234
++P T T + L L++N L+ ++PA L G + +T+ L N L FG
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 62 TCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKT 121
T DL+ N++ SL + LP +V F++L SL P+ A+ L L+
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVS---------FNRLTSL--PLG-ALRGLGELQE 128
Query: 122 LRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSI 181
L + + P ++ L L L+ NNL+ G L+ L+ L L L N L +I
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 182 PESF 185
P+ F
Sbjct: 188 PKGF 191
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 119 LKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLT 178
L TL +S + +P L LT L++SFN L+ G+L L +L L+L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 179 GSIPESFGTFTGSIPDLYLSHNQLSGKIPASL--GSMDFNTIDLSRNKLEGDASFLFG 234
++P T T + L L++N L+ ++PA L G + +T+ L N L FG
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 62 TCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKT 121
T DL+ N++ SL + LP +V F++L SL P+ A+ L L+
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVS---------FNRLTSL--PLG-ALRGLGELQE 128
Query: 122 LRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSI 181
L + + P ++ L L L+ NNL+ G L+ L+ L L L N L +I
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 182 PESF 185
P+ F
Sbjct: 188 PKGF 191
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 119 LKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLT 178
L TL +S + +P L LT L++SFN L+ G+L L +L L+L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 179 GSIPESFGTFTGSIPDLYLSHNQLSGKIPASL--GSMDFNTIDLSRNKLEGDASFLFG 234
++P T T + L L++N L+ ++PA L G + +T+ L N L FG
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 62 TCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKT 121
T DL+ N++ SL + LP +V F++L SL P+ A+ L L+
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVS---------FNRLTSL--PLG-ALRGLGELQE 128
Query: 122 LRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSI 181
L + + P ++ L L L+ NNL+ G L+ L+ L L L N L +I
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 182 PESF 185
P+ F
Sbjct: 188 PKGF 191
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 106/247 (42%), Gaps = 55/247 (22%)
Query: 113 IAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHL 172
+A L NL L + I+ P + LTNL LELS N +S +LS L L L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF 158
Query: 173 DRNKLTGSIP-------ESFGTFTGSIPD------------LYLSHNQLSGKIP------ 207
N++T P E + + D L ++NQ+S P
Sbjct: 159 SSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 208 --------------ASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFN 252
+L S+ + +DL+ N++ A L GL K T+ + + N + N
Sbjct: 219 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE-LKLGANQIS-N 275
Query: 253 LSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGG--KLQSFG 310
+S + +LTNL+LN N++ P I++L+NL +L + +N + PV KLQ
Sbjct: 276 ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL- 332
Query: 311 YTEYFHN 317
+F+N
Sbjct: 333 ---FFYN 336
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 137 ISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLY 196
IS L NLT+L L FNN+S P +S L KL L NK+ S S T +I L
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLT-NINWLS 355
Query: 197 LSHNQLSGKIP 207
HNQ+S P
Sbjct: 356 AGHNQISDLTP 366
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 23/161 (14%)
Query: 89 GDLPYLETLMFHK--LPSL--TGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLT 144
G P L+TL+ + L S+ TG I + LKNL +L IS N P+PD +
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEI---LLTLKNLTSLDIS-RNTFHPMPDSCQWPEKMR 413
Query: 145 FLELS---FNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQ 201
FL LS + IP Q L L + N L +SF F + +LY+S N+
Sbjct: 414 FLNLSSTGIRVVKTCIP------QTLEVLDVSNNNL-----DSFSLFLPRLQELYISRNK 462
Query: 202 LSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRI 242
L ASL + + +SRN+L+ +F + Q+I
Sbjct: 463 LKTLPDASLFPV-LLVMKISRNQLKSVPDGIFDRLTSLQKI 502
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 91 LPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSF 150
+P L L +L L+ + A L NL+ L ++ N+ +P+ ++ L L L+LS
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSG 216
Query: 151 NNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLS 203
N+LS PGS L L L + ++++ +F S+ ++ L+HN L+
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLT 268
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 24/172 (13%)
Query: 122 LRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSI 181
L + +IS D L +L L L N +S + S L+KL L++ +N L I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EI 117
Query: 182 PESFGTFTGSIPDLYLSHNQLSGKIPASL--GSMDFNTIDLSRNKLEG---DASFLFGLN 236
P + + S+ +L + N++ K+P + G + N I++ N LE + GL
Sbjct: 118 PPNLPS---SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173
Query: 237 KTTQRIDVSRNLLEFNLSKV--EFPQSLTNLDLNHNKIFGSIPAQITSLENL 286
RI E L+ + + P++L L L+HNKI Q LE+L
Sbjct: 174 LNYLRIS------EAKLTGIPKDLPETLNELHLDHNKI------QAIELEDL 213
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 104/242 (42%), Gaps = 51/242 (21%)
Query: 113 IAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHL 172
+A L NL L + I+ P + LTNL LELS N +S +LS L L L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF 158
Query: 173 DRNKLTGSIP-------ESFGTFTGSIPD------------LYLSHNQLSGKIP------ 207
N++T P E + + D L ++NQ+S P
Sbjct: 159 SSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 208 --------------ASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFN 252
+L S+ + +DL+ N++ A L GL K T+ + + N + N
Sbjct: 219 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE-LKLGANQIS-N 275
Query: 253 LSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGG--KLQSFG 310
+S + +LTNL+LN N++ P I++L+NL +L + +N + PV KLQ
Sbjct: 276 ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 333
Query: 311 YT 312
++
Sbjct: 334 FS 335
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 137 ISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLY 196
IS L NLT+L L FNN+S P +S L KL L NK+ S S T I L
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV--SDVSSLANLTN-INWLS 355
Query: 197 LSHNQLSGKIP 207
HNQ+S P
Sbjct: 356 AGHNQISDLTP 366
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 139 QLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLS 198
+LT+LT+L LS N L G KL +L L L+ N+L S+P+ + DL L
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLY 132
Query: 199 HNQL 202
NQL
Sbjct: 133 QNQL 136
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 91 LPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSF 150
+P L L +L L + A L NL+ L + N+ +P+ ++ L L LELS
Sbjct: 130 VPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IPN-LTALVRLEELELSG 187
Query: 151 NNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQL 202
N L PGS L L L L ++ +F S+ +L LSHN L
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK-SLEELNLSHNNL 238
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 91 LPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSF 150
+P L L +L L + A L NL+ L + N+ +P+ ++ L L LELS
Sbjct: 130 VPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IPN-LTALVRLEELELSG 187
Query: 151 NNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQL 202
N L PGS L L L L ++ +F S+ +L LSHN L
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL-KSLEELNLSHNNL 238
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 133 VPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSI 192
+PD ++L NLTFL+LS L P + + L L L++ N+L S+P+ S+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSL 520
Query: 193 PDLYLSHN 200
++L N
Sbjct: 521 QKIWLHTN 528
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 113 IAKLKNLKTLRISWTNI-SGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKL 167
I LK LK L ++ I S +P++ S LTNL L+LS N + L L ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 26/97 (26%)
Query: 106 TGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQ 165
T P++ ++ K K L L + + G +P F S++
Sbjct: 319 TFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEI------------------------- 353
Query: 166 KLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQL 202
KL +L+L N++T IP +F FT + +L +HN+L
Sbjct: 354 KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 199 HNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEF--NLSKV 256
+NQL GK+PA + +++L+ N++ + G + + + + N L++ N+
Sbjct: 339 YNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398
Query: 257 EFPQSLTNLDLNHNKIFGSIPAQ 279
+ + +D ++N+I GS+ +
Sbjct: 399 KSVSVXSAIDFSYNEI-GSVDGK 420
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 120 KTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTG 179
+ L + I+ P LT LT+L L+ N L+ G KL KL L L N+L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL-K 101
Query: 180 SIPESFGTFTGSIPDLYLSHN 200
SIP S+ +YL +N
Sbjct: 102 SIPMGVFDNLKSLTHIYLFNN 122
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 137 ISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLY 196
IS L NLT+L L FNN+S P +S L KL L NK+ S S T +I L
Sbjct: 300 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV--SDVSSLANLT-NINWLS 354
Query: 197 LSHNQLSGKIP 207
HNQ+S P
Sbjct: 355 AGHNQISDLTP 365
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 56/244 (22%)
Query: 113 IAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGS------------ 160
+A L NL L + I+ P + LTNL LELS N +S S
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 161 -----------------------------LSKLQKLGALHLDRNKLTGSIPESFGTFTGS 191
L+KL L +L N+++ P G T +
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT-N 217
Query: 192 IPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLE 250
+ +L L+ NQL K +L S+ + +DL+ N++ A L GL K T+ + + N +
Sbjct: 218 LDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE-LKLGANQIS 273
Query: 251 FNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGG--KLQS 308
N+S + +LTNL+LN N++ P I++L+NL +L + +N + PV KLQ
Sbjct: 274 -NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQR 330
Query: 309 FGYT 312
++
Sbjct: 331 LFFS 334
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 140 LTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSH 199
LT LT+L L +N L G L +LG L L N+L S+P + LYL
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 200 NQL 202
NQL
Sbjct: 117 NQL 119
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 11/122 (9%)
Query: 62 TCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKT 121
T L N++ SL + D Q+ D YL LPS +L LK
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQL-----DKLYLGGNQLKSLPS------GVFDRLTKLKE 135
Query: 122 LRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSI 181
LR++ + +LTNL L LS N L G+ +L KL + L N+ S
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195
Query: 182 PE 183
E
Sbjct: 196 CE 197
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 140 LTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSH 199
LT LT+L L +N L G L +LG L L N+L S+P + LYL
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 200 NQL 202
NQL
Sbjct: 117 NQL 119
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 115 KLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDR 174
+L LK LR++ + +LTNL L LS N L G+ +L KL + L
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 175 NKLTGSIPESF 185
N+ S E+
Sbjct: 189 NQFDCSRCETL 199
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 242 IDVSRNLLEFNLSKVEFPQS-LTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCG-P 299
+D+S NL FN+S F LT L LN N + +PA+I +L NL L++S+NRL P
Sbjct: 229 LDLS-NLQIFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSLP 286
Query: 300 IPVGGKLQSFGYTEYFHN 317
+G Q Y +F N
Sbjct: 287 AELGSCFQ-LKYFYFFDN 303
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 137 ISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLY 196
IS L NLT+L L FNN+S P +S L KL L NK+ S S T +I L
Sbjct: 304 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLT-NINWLS 358
Query: 197 LSHNQLSGKIP 207
HNQ+S P
Sbjct: 359 AGHNQISDLTP 369
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 107/250 (42%), Gaps = 60/250 (24%)
Query: 113 IAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGS------------ 160
+A L NL L + I+ P + LTNL LELS N +S S
Sbjct: 107 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 164
Query: 161 -----------------------------LSKLQKLGALHLDRNKLTGSIPESFGTFTGS 191
L+KL L +L N+++ P G T +
Sbjct: 165 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT-N 221
Query: 192 IPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLE 250
+ +L L+ NQL K +L S+ + +DL+ N++ A L GL K T+ + + N +
Sbjct: 222 LDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE-LKLGANQIS 277
Query: 251 FNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGG--KLQS 308
N+S + +LTNL+LN N++ P I++L+NL +L + +N + PV KLQ
Sbjct: 278 -NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQR 334
Query: 309 FGYTEYFHNR 318
+F N
Sbjct: 335 L----FFANN 340
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 93/248 (37%), Gaps = 44/248 (17%)
Query: 64 DLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQP-AIAKLKNLKTL 122
DL NRI +L E P+LE L ++ ++ ++P A L NL+TL
Sbjct: 38 DLGKNRIKTLN----------QDEFASFPHLEELELNE--NIVSAVEPGAFNNLFNLRTL 85
Query: 123 RISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIP 182
+ + + L+NLT L++S N + + L L +L + N L
Sbjct: 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145
Query: 183 ESFGTFTG------------SIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDAS 230
+F SIP LSH L G I L ++ N I D S
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSH--LHGLIVLRLRHLNINAIR--------DYS 195
Query: 231 FLFGLNKTTQRIDVSR----NLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENL 286
F K R+ V L+ + +LT+L + H + + L L
Sbjct: 196 F-----KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250
Query: 287 GFLNVSYN 294
FLN+SYN
Sbjct: 251 RFLNLSYN 258
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 84 IPPEVGDLPYLETLMFHKLPSLTGPIQPAIAK--------LKNLKTLRISWTNISGPVPD 135
+P + L L L P LT +P + L NL++LR+ WT I +P
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPA 200
Query: 136 FISQLTNLTFLELSFNNLSGTIPG--SLSKLQKL 167
I+ L NL L++ + LS P L KL++L
Sbjct: 201 SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 137 ISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLY 196
IS L NLT+L L FNN+S P +S L KL L NK+ S S T +I L
Sbjct: 300 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLT-NINWLS 354
Query: 197 LSHNQLSGKIP 207
HNQ+S P
Sbjct: 355 AGHNQISDLTP 365
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 108/250 (43%), Gaps = 60/250 (24%)
Query: 113 IAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGS------------ 160
+A L NL L + I+ P + LTNL LELS N +S S
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 161 -----------------------------LSKLQKLGALHLDRNKLTGSIPESFGTFTGS 191
L+KL L +L N+++ P G T +
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT-N 217
Query: 192 IPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLE 250
+ +L L+ NQL K +L S+ + +DL+ N++ A L GL K T+ + + N +
Sbjct: 218 LDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE-LKLGANQIS 273
Query: 251 FNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGG--KLQS 308
N+S + +LTNL+LN N++ P I++L+NL +L + +N + PV KLQ
Sbjct: 274 -NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQR 330
Query: 309 FGYTEYFHNR 318
+F+N
Sbjct: 331 L----FFYNN 336
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 137 ISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLY 196
IS L NLT+L L FNN+S P +S L KL L NK+ S S T +I L
Sbjct: 305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLT-NINWLS 359
Query: 197 LSHNQLSGKIP 207
HNQ+S P
Sbjct: 360 AGHNQISDLTP 370
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 108/250 (43%), Gaps = 60/250 (24%)
Query: 113 IAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGS------------ 160
+A L NL L + I+ P + LTNL LELS N +S S
Sbjct: 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 165
Query: 161 -----------------------------LSKLQKLGALHLDRNKLTGSIPESFGTFTGS 191
L+KL L +L N+++ P G T +
Sbjct: 166 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT-N 222
Query: 192 IPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLE 250
+ +L L+ NQL K +L S+ + +DL+ N++ A L GL K T+ + + N +
Sbjct: 223 LDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE-LKLGANQIS 278
Query: 251 FNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGG--KLQS 308
N+S + +LTNL+LN N++ P I++L+NL +L + +N + PV KLQ
Sbjct: 279 -NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQR 335
Query: 309 FGYTEYFHNR 318
+F+N
Sbjct: 336 L----FFYNN 341
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 141 TNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESF 185
TNLT L+LS+NNL GS S L L L L+ N + P SF
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSF 292
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 91 LPYLETLMFHKLPSLTGPIQPA-IAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELS 149
+P L+ LM ++ I P+ L+NL L +S NI+ D + L NL L+
Sbjct: 453 VPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQ 512
Query: 150 FNNLSGTIP-----GSLSKLQKLGALHL 172
NNL+ G ++ L+ L LH+
Sbjct: 513 HNNLARLWKRANPGGPVNFLKGLSHLHI 540
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 10/191 (5%)
Query: 116 LKNLKTLRISWTNISGPVPDFISQLTNLTFLELS--FNNLSGTIPGSLSKLQK--LGALH 171
LK L+ L + NI + + L +L +L LS F +L + L L L+
Sbjct: 328 LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLN 387
Query: 172 LDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPAS--LGSMDFNTIDLSRNKLEGDA 229
L +N ++ +F ++ G + L L N++ K+ G + I LS NK +
Sbjct: 388 LTKNHISKIANGTF-SWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLS 446
Query: 230 SFLFGLNKTTQRIDVSRNLLE-FNLSKVEFP--QSLTNLDLNHNKIFGSIPAQITSLENL 286
+ F L + QR+ + R L+ ++S F ++LT LDL++N I + LENL
Sbjct: 447 TSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENL 506
Query: 287 GFLNVSYNRLC 297
L+ +N L
Sbjct: 507 EILDFQHNNLA 517
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 58/129 (44%), Gaps = 22/129 (17%)
Query: 89 GDLPYLETLMFHK--LPSL--TGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLT 144
G P L+TL+ + L S+ TG I + LKNL +L IS N P+PD +
Sbjct: 384 GAWPSLQTLVLSQNHLRSMQKTGEI---LLTLKNLTSLDIS-RNTFHPMPDSCQWPEKMR 439
Query: 145 FLELS---FNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQ 201
FL LS + IP Q L L + N L +SF F + +LY+S N+
Sbjct: 440 FLNLSSTGIRVVKTCIP------QTLEVLDVSNNNL-----DSFSLFLPRLQELYISRNK 488
Query: 202 LSGKIPASL 210
L ASL
Sbjct: 489 LKTLPDASL 497
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 31/119 (26%)
Query: 112 AIAKLKNLKTLRISWTNISGPVP------------DF--------ISQLTNLTFLELSFN 151
AIA L+++KTL ++ T I+ P D ++ LTNL +L + N
Sbjct: 108 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNN 167
Query: 152 NLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDL---YLSHNQLSGKIP 207
++ P L+ L KL L D NK++ P S+P+L +L NQ+S P
Sbjct: 168 QVNDLTP--LANLSKLTTLRADDNKISDISP------LASLPNLIEVHLKDNQISDVSP 218
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 166 KLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQL-------SGKIPASLGSMDF 215
KL L LD N++ IPE F FT + L SHN+L + K GS+DF
Sbjct: 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDF 651
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 104/248 (41%), Gaps = 49/248 (19%)
Query: 76 FAGDLPGQIPPEVGD------LPYLETLMFH--KLPSLTGPIQPAIAKLKNLKTLRISWT 127
FA ++ + D L L +L H + +TG I KL L L +
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-----IEKLTGLTKLICTSN 74
Query: 128 NISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLT------GSI 181
NI+ +SQ TNLT+L N L+ ++ L KL L+ D NKLT +
Sbjct: 75 NITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLDVSQNPL 128
Query: 182 PESFGTFTGSIPDLYLSHN----QLSGKIPASLGSMD------FNTIDLSRNKL-EGDAS 230
++ ++ +SHN +L + + +D T+D S NK+ E D S
Sbjct: 129 LTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVS 188
Query: 231 FLFGLNKTTQRIDVSRNLLEFNLSKVEFPQS--LTNLDLNHNKIFGSIPAQITSLENLGF 288
NK R++ N N++K++ Q+ LT LD + NK+ +T L L +
Sbjct: 189 ----QNKLLNRLNCDTN----NITKLDLNQNIQLTFLDCSSNKL---TEIDVTPLTQLTY 237
Query: 289 LNVSYNRL 296
+ S N L
Sbjct: 238 FDCSVNPL 245
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 31/119 (26%)
Query: 112 AIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGS----------- 160
AIA L+++KTL ++ T I+ P ++ L+NL L L N ++ P +
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIG 159
Query: 161 ---------LSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDL---YLSHNQLSGKIP 207
L+ L KL L D NK++ P S+P+L +L +NQ+S P
Sbjct: 160 NAQVSDLTPLANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVSP 212
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 116 LKNLKTLRISWTNI-SGPVPDFISQLTNLTFLELS---FNNLSGTIPGSLSKLQKLGALH 171
L +L+ L+++ + +PD ++L NLTFL+LS LS T SLS LQ L H
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 113 IAKLKNLKTLRISWTNI-SGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKL 167
I LK LK L ++ I S +P++ S LTNL L+LS N + L L ++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 116 LKNLKTLRISWTNI-SGPVPDFISQLTNLTFLELS---FNNLSGTIPGSLSKLQKLGALH 171
L +L+ L+++ + +PD ++L NLTFL+LS LS T SLS LQ L H
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 113 IAKLKNLKTLRISWTNI-SGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKL 167
I LK LK L ++ I S +P++ S LTNL L+LS N + L L ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 116 LKNLKTLRISWTNISGP-VPDFISQLTNLTFLELS---FNNLSGTIPGSLSKLQKLGALH 171
L +L+ L+++ + +PD ++L NLTFL+LS LS T SLS LQ L H
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 91 LPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSF 150
+P L L +L L + A L NLK L + NI +P+ ++ L L LE+S
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSG 227
Query: 151 NNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLS 203
N+ PGS L L L + ++++ +F S+ +L L+HN LS
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL-ASLVELNLAHNNLS 279
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 132 PVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGS 191
P +F ++ + LT L++ FN +S P KL L L+L N+L+ ++F F +
Sbjct: 46 PAANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTN 103
Query: 192 IPDLYLSHNQLSG-KIPASLGSMDFNTIDLSRNKL 225
+ +L+L N + K + + T+DLS N L
Sbjct: 104 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 138
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 13/185 (7%)
Query: 97 LMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNI-SGPVPDFISQLTNLTFLELSFNNLSG 155
L ++K LT + L+ L R++ N+ S P P L NLT L+LS NN++
Sbjct: 442 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIAN 499
Query: 156 TIPGSLSKLQKLGALHLDRNKLT----GSIPESFGTFTGSIPDLYLSHNQLSG--KIPAS 209
L L+KL L L N L + P F + L++ + + +G +IP
Sbjct: 500 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 559
Query: 210 LGS--MDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFP--QSLTNL 265
+ + IDL N L + +F + + +++ +NL+ KV P ++LT L
Sbjct: 560 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 619
Query: 266 DLNHN 270
D+ N
Sbjct: 620 DMRFN 624
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 132 PVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGS 191
P +F ++ + LT L++ FN +S P KL L L+L N+L+ ++F F +
Sbjct: 41 PAANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTN 98
Query: 192 IPDLYLSHNQLSGKIPAS--LGSMDFNTIDLSRNKL 225
+ +L+L N + KI + + + T+DLS N L
Sbjct: 99 LTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGL 133
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 13/185 (7%)
Query: 97 LMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNI-SGPVPDFISQLTNLTFLELSFNNLSG 155
L ++K LT + L+ L R++ N+ S P P L NLT L+LS NN++
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIAN 494
Query: 156 TIPGSLSKLQKLGALHLDRNKLT----GSIPESFGTFTGSIPDLYLSHNQLSG--KIPAS 209
L L+KL L L N L + P F + L++ + + +G +IP
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554
Query: 210 LGS--MDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFP--QSLTNL 265
+ + IDL N L + +F + + +++ +NL+ KV P ++LT L
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614
Query: 266 DLNHN 270
D+ N
Sbjct: 615 DMRFN 619
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 132 PVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGS 191
P +F ++ + LT L++ FN +S P KL L L+L N+L+ ++F F +
Sbjct: 51 PAANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTN 108
Query: 192 IPDLYLSHNQLSGKIPAS--LGSMDFNTIDLSRNKL 225
+ +L+L N + KI + + + T+DLS N L
Sbjct: 109 LTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGL 143
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 13/185 (7%)
Query: 97 LMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNI-SGPVPDFISQLTNLTFLELSFNNLSG 155
L ++K LT + L+ L R++ N+ S P P L NLT L+LS NN++
Sbjct: 447 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIAN 504
Query: 156 TIPGSLSKLQKLGALHLDRNKLT----GSIPESFGTFTGSIPDLYLSHNQLSG--KIPAS 209
L L+KL L L N L + P F + L++ + + +G +IP
Sbjct: 505 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 564
Query: 210 LGS--MDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFP--QSLTNL 265
+ + IDL N L + +F + + +++ +NL+ KV P ++LT L
Sbjct: 565 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 624
Query: 266 DLNHN 270
D+ N
Sbjct: 625 DMRFN 629
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 137 ISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLY 196
+ L L L LSF +LS + + L+ + + L N+LT S E+ G L
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY--LN 529
Query: 197 LSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDAS---FLFGLNKTTQRIDVSRNLL 249
L+ N +S +P+ L + TI+L +N L+ S FL + Q+++ + + L
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTL 586
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 100/248 (40%), Gaps = 28/248 (11%)
Query: 90 DLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQL--TNLTFLE 147
DLP+L++L L G I L +L L +S +S S L +L L+
Sbjct: 321 DLPFLKSL---TLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 377
Query: 148 LSFNN---LSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSG 204
LSFN +S G L +LQ HLD T F F LYL + +
Sbjct: 378 LSFNGAIIMSANFMG-LEELQ-----HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 431
Query: 205 KIPAS---LGSMDFNTIDLSRNKLEGDA-SFLFGLNKTTQRIDVSRNLLE-FNLSKVEFP 259
KI LG NT+ ++ N + + S +F +D+S+ LE + +
Sbjct: 432 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 491
Query: 260 QSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHN-- 317
L L+++HN + + L +L L+ S+NR+ G LQ F + F N
Sbjct: 492 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS---KGILQHFPKSLAFFNLT 548
Query: 318 ----RCLC 321
C+C
Sbjct: 549 NNSVACIC 556
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 113 IAKLKNLKTLRISWTNI-SGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKL 167
I LK LK L ++ I S +P++ S LTNL L+LS N + L L ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 100/248 (40%), Gaps = 28/248 (11%)
Query: 90 DLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQL--TNLTFLE 147
DLP+L++L L G I L +L L +S +S S L +L L+
Sbjct: 326 DLPFLKSL---TLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382
Query: 148 LSFNN---LSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSG 204
LSFN +S G L +LQ HLD T F F LYL + +
Sbjct: 383 LSFNGAIIMSANFMG-LEELQ-----HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436
Query: 205 KIPAS---LGSMDFNTIDLSRNKLEGDA-SFLFGLNKTTQRIDVSRNLLE-FNLSKVEFP 259
KI LG NT+ ++ N + + S +F +D+S+ LE + +
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496
Query: 260 QSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHN-- 317
L L+++HN + + L +L L+ S+NR+ G LQ F + F N
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS---KGILQHFPKSLAFFNLT 553
Query: 318 ----RCLC 321
C+C
Sbjct: 554 NNSVACIC 561
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 113 IAKLKNLKTLRISWTNI-SGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKL 167
I LK LK L ++ I S +P++ S LTNL L+LS N + L L ++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 164 LQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTI-DLS- 221
LQ L KL ++PES I D L G + GS++ T+ DL
Sbjct: 33 LQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGC 92
Query: 222 --------RNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK 255
+KL G+ + G++ +++V+R +E++ K
Sbjct: 93 GTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEK 134
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 113 IAKLKNLKTLRISWTNI-SGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKL 167
I LK LK L ++ I S +P++ S LTNL L+LS N + L L ++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 113 IAKLKNLKTLRISWTNI-SGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKL 167
I LK LK L ++ I S +P++ S LTNL L+LS N + L L ++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 113 IAKLKNLKTLRISWTNI-SGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKL 167
I LK LK L ++ I S +P++ S LTNL L+LS N + L L ++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|2BE1|A Chain A, Structure Of The Compact Lumenal Domain Of Yeast Ire1
pdb|2BE1|B Chain B, Structure Of The Compact Lumenal Domain Of Yeast Ire1
Length = 339
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 157 IPGSLSKLQKLGALHLDRNKL---TGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLG 211
+P S+ +L LHL N + +G I E +TGS+ + + N L+G+I ++ G
Sbjct: 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 256 VEFPQSLTNLDLNHNKIFGS--IPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSF 309
+E ++L LDL+H+ I S Q+ +L +L +LN+SYN P+G + Q+F
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNE-----PLGLEDQAF 395
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 8/191 (4%)
Query: 113 IAKLKNLKTLRISWTNISGP--VPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGAL 170
+ KL+NL+ L +S ++I + L +L +L LS+N G + + +L L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 171 HLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASL-GSMDFNTIDLSRNKLEGDA 229
+ L P S + L LSH L L G D ++L N + +
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS 464
Query: 230 SFLFGLNKTTQRIDV----SRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLEN 285
L + +++ S NLL + +++ +LDL+HN + G ++ L+
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKG 524
Query: 286 LGFLNVSYNRL 296
L +LN++ N +
Sbjct: 525 L-YLNMASNNI 534
>pdb|3GOZ|A Chain A, Crystal Structure Of The Leucine-Rich Repeat-Containing
Protein Legl7 From Legionella Pneumophila. Northeast
Structural Genomics Consortium Target Lgr148
Length = 362
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 29/128 (22%)
Query: 183 ESFGTFTGSIPDLYLSHN-----------QLSGKIPASLGSMDFNTIDLSRNKLEGDASF 231
++F SI L L N Q+ IPA++ S++ +L+ A F
Sbjct: 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF 190
Query: 232 LFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNV 291
L + + +D+S NLL S E IF SIP + S LN+
Sbjct: 191 LASIPASVTSLDLSANLLGLK-SYAELAY-----------IFSSIPNHVVS------LNL 232
Query: 292 SYNRLCGP 299
N L GP
Sbjct: 233 CLNCLHGP 240
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 71/182 (39%), Gaps = 48/182 (26%)
Query: 130 SGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFT 189
S PV +F S +T L+LS NNL S+S ++ + A F
Sbjct: 11 SNPVEEFTSIPHGVTSLDLSLNNLY-----SISTVELIQA---------------FANTP 50
Query: 190 GSIPDLYLSHN-----------QLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKT 238
S+ L LS N Q+ IPA++ S++ + LS + L + T
Sbjct: 51 ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFT 110
Query: 239 TQRIDVSRN------LLEFNLSKVEFPQSLTNLDLNHN-----------KIFGSIPAQIT 281
+D+ N EF + P S+T+L+L N +I +IPA +
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170
Query: 282 SL 283
SL
Sbjct: 171 SL 172
>pdb|1DUW|A Chain A, Structure Of Nonaheme Cytochrome C
Length = 292
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 51 PKTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQ 110
PK D +C TC T+ + + G + G++PP+ + ET++ HK P+Q
Sbjct: 120 PKRD--QAWCATCHNVTSSMTPEQMQQG-IKGKLPPDQNEALAAETVLNHK------PVQ 170
Query: 111 PAIA 114
P A
Sbjct: 171 PLTA 174
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 18/224 (8%)
Query: 112 AIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALH 171
A A ++ L + + I P + LT L L N+LS G KL L
Sbjct: 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147
Query: 172 LDRNKLTGSIPESFGTFTGSIPDLYLSHNQLS----GKIPASL-GSMDFN---TIDLSRN 223
+ N L ++F T S+ +L LS N+L+ IP+ ++ +N T+ +
Sbjct: 148 MSNNNLERIEDDTFQA-TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 206
Query: 224 KLEGDASFLFGLNKTTQRIDVSRNLLEF---NLSK----VEFPQSLTNLDLNHNKIFGSI 276
E DAS +N ++V +L+ NL+ + +P L +DL++N++ +
Sbjct: 207 VEELDASH-NSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP-GLVEVDLSYNELEKIM 264
Query: 277 PAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCL 320
++ L L +S NRL G + + + HN L
Sbjct: 265 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 308
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 123 RISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIP 182
RIS + G +P + LEL N L+G P + + L L NK+ I
Sbjct: 43 RISSDGLFGRLPHLVK-------LELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EIS 94
Query: 183 ESFGTFTGSIPDLYLSHNQLSGKIPASLGSMD-FNTIDLSRN 223
+ L L NQ+S +P S ++ +++L+ N
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,321,601
Number of Sequences: 62578
Number of extensions: 372819
Number of successful extensions: 1043
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 214
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)