Query 020203
Match_columns 329
No_of_seqs 289 out of 3829
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 07:52:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.9E-38 4.2E-43 320.7 26.0 288 26-318 27-319 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.7E-30 1.2E-34 259.1 17.2 246 68-317 118-366 (968)
3 KOG4194 Membrane glycoprotein 99.9 2.3E-26 5E-31 205.9 2.7 246 70-318 175-427 (873)
4 KOG4194 Membrane glycoprotein 99.9 8.8E-26 1.9E-30 202.2 2.0 255 68-325 197-457 (873)
5 KOG0444 Cytoskeletal regulator 99.9 6.6E-25 1.4E-29 198.2 -2.8 251 68-326 103-381 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.3E-24 5.1E-29 194.7 -2.3 243 68-318 7-279 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 5.7E-25 1.2E-29 189.1 -9.7 239 69-319 69-309 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 1.3E-23 2.8E-28 180.8 -4.2 90 231-320 429-541 (565)
9 PRK15370 E3 ubiquitin-protein 99.8 3.8E-19 8.2E-24 171.6 16.4 247 22-297 57-380 (754)
10 KOG4237 Extracellular matrix p 99.8 2.5E-21 5.5E-26 166.4 -1.0 255 68-325 67-364 (498)
11 PLN03210 Resistant to P. syrin 99.8 3.7E-18 8.1E-23 174.5 19.7 243 68-322 611-908 (1153)
12 PRK15370 E3 ubiquitin-protein 99.8 7.7E-19 1.7E-23 169.5 11.0 224 68-319 199-427 (754)
13 PLN03210 Resistant to P. syrin 99.8 1.3E-17 2.9E-22 170.5 19.4 246 68-325 589-887 (1153)
14 KOG0618 Serine/threonine phosp 99.8 1.6E-20 3.4E-25 176.6 -2.2 242 69-319 220-488 (1081)
15 PRK15387 E3 ubiquitin-protein 99.7 2E-17 4.3E-22 159.1 14.5 114 191-319 343-457 (788)
16 cd00116 LRR_RI Leucine-rich re 99.7 2.7E-19 5.9E-24 159.1 1.6 249 69-319 24-319 (319)
17 cd00116 LRR_RI Leucine-rich re 99.7 3.4E-19 7.4E-24 158.5 0.8 247 72-320 2-291 (319)
18 KOG0617 Ras suppressor protein 99.7 3E-20 6.6E-25 142.9 -6.3 179 114-321 30-213 (264)
19 PRK15387 E3 ubiquitin-protein 99.7 6.5E-17 1.4E-21 155.6 13.0 207 69-302 223-463 (788)
20 KOG0617 Ras suppressor protein 99.7 3.3E-19 7.1E-24 137.2 -5.3 178 88-272 29-211 (264)
21 PLN03150 hypothetical protein; 99.7 3.6E-16 7.8E-21 150.0 13.7 153 22-177 366-527 (623)
22 KOG0618 Serine/threonine phosp 99.7 5.2E-18 1.1E-22 159.9 -2.7 220 66-295 239-487 (1081)
23 KOG4237 Extracellular matrix p 99.7 2.6E-18 5.6E-23 148.0 -4.4 231 93-326 68-341 (498)
24 PLN03150 hypothetical protein; 99.4 2.5E-12 5.4E-17 123.7 10.3 111 93-204 419-529 (623)
25 COG4886 Leucine-rich repeat (L 99.4 1.2E-12 2.5E-17 120.1 7.1 197 96-302 97-295 (394)
26 KOG0532 Leucine-rich repeat (L 99.3 3E-14 6.6E-19 128.4 -5.3 194 115-317 73-270 (722)
27 KOG0532 Leucine-rich repeat (L 99.3 3E-14 6.4E-19 128.4 -5.9 195 90-295 73-271 (722)
28 COG4886 Leucine-rich repeat (L 99.2 7.2E-12 1.6E-16 114.8 5.8 193 120-320 96-290 (394)
29 KOG3207 Beta-tubulin folding c 99.2 2.2E-12 4.7E-17 113.2 -1.7 208 90-299 119-341 (505)
30 KOG1909 Ran GTPase-activating 99.2 6.6E-12 1.4E-16 107.3 1.0 226 68-296 30-310 (382)
31 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.4E-16 104.1 1.6 130 163-298 282-413 (490)
32 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.3E-16 108.9 0.5 205 114-319 118-338 (505)
33 KOG1909 Ran GTPase-activating 99.1 1.2E-11 2.6E-16 105.7 0.2 233 85-319 23-310 (382)
34 KOG1259 Nischarin, modulator o 99.1 1.4E-11 3.1E-16 103.5 0.3 123 191-318 285-410 (490)
35 PF14580 LRR_9: Leucine-rich r 99.0 3.4E-10 7.3E-15 90.4 5.9 126 113-244 15-147 (175)
36 PF14580 LRR_9: Leucine-rich r 99.0 2.1E-10 4.4E-15 91.7 3.1 124 185-314 15-147 (175)
37 PF13855 LRR_8: Leucine rich r 98.8 1.9E-09 4.1E-14 70.9 3.0 59 118-176 2-60 (61)
38 KOG4658 Apoptotic ATPase [Sign 98.8 4.5E-09 9.8E-14 103.9 5.5 128 69-201 524-653 (889)
39 KOG4658 Apoptotic ATPase [Sign 98.8 4.7E-09 1E-13 103.8 4.7 225 69-300 546-786 (889)
40 PF13855 LRR_8: Leucine rich r 98.8 8.1E-09 1.8E-13 67.9 4.4 59 238-296 2-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 1.1E-09 2.4E-14 100.9 -0.3 220 88-320 91-318 (414)
42 KOG1859 Leucine-rich repeat pr 98.8 1.5E-10 3.3E-15 107.7 -6.2 127 191-322 165-294 (1096)
43 KOG2120 SCF ubiquitin ligase, 98.8 8.6E-11 1.9E-15 98.6 -7.2 229 57-294 127-373 (419)
44 COG5238 RNA1 Ran GTPase-activa 98.7 2.7E-09 5.8E-14 88.7 0.8 85 68-154 30-133 (388)
45 KOG0531 Protein phosphatase 1, 98.7 9.6E-10 2.1E-14 101.3 -2.4 197 90-298 70-269 (414)
46 KOG2982 Uncharacterized conser 98.7 7.6E-09 1.7E-13 87.1 2.7 226 85-313 38-285 (418)
47 PF08263 LRRNT_2: Leucine rich 98.7 3.5E-08 7.6E-13 59.6 4.4 39 26-64 1-43 (43)
48 KOG1859 Leucine-rich repeat pr 98.5 1.1E-09 2.4E-14 102.1 -8.2 127 140-273 163-292 (1096)
49 KOG2982 Uncharacterized conser 98.2 1.3E-07 2.8E-12 79.8 -2.7 204 116-320 44-262 (418)
50 PF12799 LRR_4: Leucine Rich r 98.1 2.9E-06 6.2E-11 51.3 3.7 38 260-298 1-38 (44)
51 KOG2120 SCF ubiquitin ligase, 98.1 8.5E-08 1.8E-12 81.0 -5.5 228 68-296 159-399 (419)
52 PF12799 LRR_4: Leucine Rich r 98.0 5E-06 1.1E-10 50.3 3.0 36 118-154 2-37 (44)
53 PRK15386 type III secretion pr 98.0 2.6E-05 5.7E-10 70.3 8.6 75 88-176 48-123 (426)
54 COG5238 RNA1 Ran GTPase-activa 98.0 3.4E-06 7.4E-11 70.6 2.2 230 87-319 25-315 (388)
55 KOG4579 Leucine-rich repeat (L 97.9 2.6E-07 5.6E-12 69.3 -4.5 82 214-296 54-135 (177)
56 KOG4579 Leucine-rich repeat (L 97.9 6.4E-07 1.4E-11 67.2 -2.9 82 117-202 53-135 (177)
57 KOG1644 U2-associated snRNP A' 97.8 3E-05 6.5E-10 62.2 5.3 102 165-270 42-150 (233)
58 KOG1644 U2-associated snRNP A' 97.7 7.1E-05 1.5E-09 60.1 5.2 122 191-316 20-149 (233)
59 PRK15386 type III secretion pr 97.6 0.00042 9.2E-09 62.6 9.4 137 112-271 47-188 (426)
60 KOG2739 Leucine-rich acidic nu 97.4 9E-05 1.9E-09 61.9 2.9 81 214-298 44-130 (260)
61 KOG3665 ZYG-1-like serine/thre 97.4 5.6E-05 1.2E-09 73.5 1.7 108 140-250 147-263 (699)
62 KOG3665 ZYG-1-like serine/thre 97.4 7.8E-05 1.7E-09 72.5 2.3 149 141-292 122-283 (699)
63 PF13306 LRR_5: Leucine rich r 97.1 0.0021 4.5E-08 48.7 7.3 120 113-238 8-127 (129)
64 KOG2739 Leucine-rich acidic nu 97.1 0.00025 5.5E-09 59.2 2.2 64 113-178 61-129 (260)
65 KOG2123 Uncharacterized conser 96.5 0.00016 3.4E-09 61.0 -3.6 84 214-301 20-105 (388)
66 KOG2123 Uncharacterized conser 96.5 0.00014 3E-09 61.3 -4.2 99 91-196 18-123 (388)
67 PF13306 LRR_5: Leucine rich r 96.4 0.022 4.8E-07 43.0 8.1 16 231-246 75-90 (129)
68 PF00560 LRR_1: Leucine Rich R 96.0 0.0034 7.3E-08 31.6 1.1 20 261-281 1-20 (22)
69 PF00560 LRR_1: Leucine Rich R 95.5 0.0054 1.2E-07 30.8 0.5 6 122-127 5-10 (22)
70 KOG4341 F-box protein containi 94.8 0.0037 7.9E-08 55.9 -2.0 226 90-315 188-460 (483)
71 KOG4341 F-box protein containi 94.7 0.001 2.3E-08 59.2 -5.5 106 69-174 139-251 (483)
72 PF13504 LRR_7: Leucine rich r 94.1 0.038 8.2E-07 25.7 1.5 13 261-273 2-14 (17)
73 KOG4308 LRR-containing protein 93.3 0.00075 1.6E-08 63.0 -9.8 65 113-177 111-184 (478)
74 KOG0473 Leucine-rich repeat pr 91.4 0.0044 9.5E-08 51.2 -6.4 81 214-296 43-123 (326)
75 KOG3864 Uncharacterized conser 91.3 0.025 5.3E-07 45.8 -2.1 59 69-127 102-161 (221)
76 KOG1947 Leucine rich repeat pr 91.1 0.033 7.2E-07 52.2 -1.9 171 116-286 187-389 (482)
77 KOG4308 LRR-containing protein 91.1 0.0017 3.8E-08 60.6 -10.3 180 70-250 89-303 (478)
78 PF13516 LRR_6: Leucine Rich r 88.8 0.15 3.3E-06 25.9 0.3 18 260-277 2-19 (24)
79 smart00370 LRR Leucine-rich re 88.8 0.43 9.3E-06 24.7 2.1 13 166-178 3-15 (26)
80 smart00369 LRR_TYP Leucine-ric 88.8 0.43 9.3E-06 24.7 2.1 13 166-178 3-15 (26)
81 KOG0473 Leucine-rich repeat pr 86.4 0.011 2.3E-07 49.0 -7.5 88 87-178 37-124 (326)
82 smart00364 LRR_BAC Leucine-ric 85.5 0.55 1.2E-05 24.5 1.2 18 260-278 2-19 (26)
83 KOG1947 Leucine rich repeat pr 85.3 0.48 1E-05 44.4 1.8 114 90-203 186-308 (482)
84 KOG3864 Uncharacterized conser 81.8 0.23 5E-06 40.4 -1.6 80 214-293 102-185 (221)
85 smart00365 LRR_SD22 Leucine-ri 74.2 2.8 6E-05 21.9 1.7 13 261-273 3-15 (26)
86 smart00368 LRR_RI Leucine rich 69.3 3.9 8.4E-05 21.6 1.6 14 260-273 2-15 (28)
87 KOG3763 mRNA export factor TAP 66.8 3.1 6.7E-05 39.2 1.4 64 235-300 216-286 (585)
88 smart00367 LRR_CC Leucine-rich 58.6 7 0.00015 20.0 1.3 16 92-107 2-17 (26)
89 KOG3763 mRNA export factor TAP 57.9 6.9 0.00015 37.0 2.0 64 164-227 217-284 (585)
90 KOG4242 Predicted myosin-I-bin 57.0 63 0.0014 30.3 7.8 34 214-247 355-390 (553)
91 PF07172 GRP: Glycine rich pro 41.6 11 0.00025 26.8 0.6 9 1-9 1-9 (95)
92 PF02950 Conotoxin: Conotoxin; 30.5 14 0.00031 24.6 -0.3 6 53-58 62-67 (75)
93 KOG4242 Predicted myosin-I-bin 29.4 1E+02 0.0022 29.0 4.7 37 166-202 215-253 (553)
94 PRK01470 tatA twin arginine tr 29.1 74 0.0016 19.7 2.7 40 4-43 6-45 (51)
95 TIGR00864 PCC polycystin catio 28.1 43 0.00092 38.4 2.5 31 243-273 1-32 (2740)
96 COG1826 TatA Sec-independent p 27.2 58 0.0012 23.1 2.3 41 2-42 5-45 (94)
97 PF10731 Anophelin: Thrombin i 24.7 63 0.0014 20.6 1.8 15 1-15 1-16 (65)
98 PRK00442 tatA twin arginine tr 23.6 90 0.002 22.0 2.6 39 4-42 7-45 (92)
99 TIGR00864 PCC polycystin catio 22.5 53 0.0011 37.7 1.9 32 196-227 1-33 (2740)
100 PRK02958 tatA twin arginine tr 22.0 91 0.002 21.0 2.3 39 5-43 8-46 (73)
101 PRK03554 tatA twin arginine tr 21.7 1.1E+02 0.0025 21.3 2.7 39 5-43 8-46 (89)
102 PF03823 Neurokinin_B: Neuroki 21.6 68 0.0015 20.1 1.5 22 10-31 8-29 (59)
103 TIGR01411 tatAE twin arginine- 21.1 1.1E+02 0.0023 18.5 2.3 39 4-42 5-43 (47)
104 PRK01614 tatE twin arginine tr 20.1 1.4E+02 0.003 20.6 2.9 39 5-43 8-46 (85)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-38 Score=320.69 Aligned_cols=288 Identities=34% Similarity=0.557 Sum_probs=200.7
Q ss_pred CHHHHHHHHHHHHhCCCCC-CCCCCCCCCCCcCccceEecCCCCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCC
Q 020203 26 NPNDKKVLLKFKKSLNNPY-VLASWNPKTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPS 104 (329)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~-~~~~w~~~~~~c~~~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 104 (329)
+++|+.||++||+++.++. .+.+|+..++||.|.|++|+. .++|+.|+++++++.|.++..+..+++|+.|++++ +.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~-n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN-NQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC-Cc
Confidence 4589999999999998774 678998888999999999984 46899999999999999999999999999999999 88
Q ss_pred CCCCChhhhc-CCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCCh
Q 020203 105 LTGPIQPAIA-KLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPE 183 (329)
Q Consensus 105 l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~ 183 (329)
+.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|.
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 8888887655 788888888888888766663 3466666777776666666666666666666666666666666666
Q ss_pred hhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CCCCCC
Q 020203 184 SFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQS 261 (329)
Q Consensus 184 ~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~ 261 (329)
.+.++. +|++|++++|.+.+.+|..++.+ +|+.|++++|.+++..|..++.+++|++|++++|.+++.+|. +..+++
T Consensus 183 ~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 183 SLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred hhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence 666666 66666666666666666666555 666666666666666665566666666666666665544443 444455
Q ss_pred CCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccCCC
Q 020203 262 LTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNR 318 (329)
Q Consensus 262 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~ 318 (329)
|++|++++|++.+.+|..+..+++|+.|++++|++.+.+|. ..++++|+.+++.+|.
T Consensus 262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 55555555555555555555555555555555555554443 2444445555544443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=5.7e-30 Score=259.14 Aligned_cols=246 Identities=33% Similarity=0.483 Sum_probs=139.7
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|++.+.+|. +.+++|++|++++ +.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~-n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSN-NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred CCCCEEECcCCccccccCc--cccCCCCEEECcC-CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 3566677777766665553 3455666666666 555555666666666666666666666555666666666666666
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCc
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLE 226 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~ 226 (329)
+++|++.+.+|..++++++|++|++++|.+.+.+|..+..+. +|++|++++|.+++.+|..++.+ +|++|++++|.+.
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC-CCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 666666655566666666666666666666555565555555 56666666666555555555555 5555555555555
Q ss_pred cchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CC
Q 020203 227 GDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GG 304 (329)
Q Consensus 227 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~ 304 (329)
+..|..+..+++|++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|. .+
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 55555555555555555555555544433 33444555555555555555555555555555555555555544443 24
Q ss_pred ccCccCcccccCC
Q 020203 305 KLQSFGYTEYFHN 317 (329)
Q Consensus 305 ~l~~L~~l~l~~n 317 (329)
.+++|+.+++++|
T Consensus 354 ~~~~L~~L~Ls~n 366 (968)
T PLN00113 354 KHNNLTVLDLSTN 366 (968)
T ss_pred CCCCCcEEECCCC
Confidence 4444444444444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.3e-26 Score=205.86 Aligned_cols=246 Identities=22% Similarity=0.217 Sum_probs=107.0
Q ss_pred EEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEcc
Q 020203 70 INSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELS 149 (329)
Q Consensus 70 v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 149 (329)
++.+++++|.++..-...|..+.+|..|.|+. |.++...+..|.++++|+.|+|..|+|.-..--.|.++++|+.|.+.
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred ceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 33444444444333333344444444444444 44444334444444444444444444431112223333333333333
Q ss_pred CCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccc
Q 020203 150 FNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGD 228 (329)
Q Consensus 150 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~ 228 (329)
.|.+...-.+.|-.+.++++|+|..|+++..-...+.+++ +|+.|++++|.+....+++++.. +|+.|+|+.|+++..
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt-~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT-SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccc-hhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 3333322223334444555555555554433333444444 55555555555554444444444 555555555555554
Q ss_pred hhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccc---hhhcCCCCCCEEEeecCcCcccCC--C
Q 020203 229 ASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIP---AQITSLENLGFLNVSYNRLCGPIP--V 302 (329)
Q Consensus 229 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l~~n~l~~~~p--~ 302 (329)
.+..|..+..|++|+++.|+++..-.. +..+++|++|||++|.+++.+- ..+..+++|+.|++.+|++.. || +
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~-I~krA 411 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS-IPKRA 411 (873)
T ss_pred ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee-cchhh
Confidence 444444444444444444444322111 2334455555555555443222 223445555555555555442 22 1
Q ss_pred CCccCccCcccccCCC
Q 020203 303 GGKLQSFGYTEYFHNR 318 (329)
Q Consensus 303 ~~~l~~L~~l~l~~n~ 318 (329)
+..++.|+.|||.+|+
T Consensus 412 fsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 412 FSGLEALEHLDLGDNA 427 (873)
T ss_pred hccCcccceecCCCCc
Confidence 3445555555555554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=8.8e-26 Score=202.17 Aligned_cols=255 Identities=20% Similarity=0.226 Sum_probs=224.5
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
..+..+.++.|.++...+..|.++++|+.|+|.. |.+...---.|.++++|+.|.+..|.+...-...|-.+.++++|+
T Consensus 197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred chheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 3677889999999877777899999999999999 777765455789999999999999999976677888999999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCc
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLE 226 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~ 226 (329)
|+.|+++..-.+++.++.+|+.|++++|.|....+++|...+ +|++|+|++|+++..-+.+|..+ .|++|.|+.|.++
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc-cceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 999999976677888999999999999999977788887777 99999999999997667778877 8999999999999
Q ss_pred cchhhhccCCCCCCEEEccCccceeecCC----CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC
Q 020203 227 GDASFLFGLNKTTQRIDVSRNLLEFNLSK----VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV 302 (329)
Q Consensus 227 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 302 (329)
......|..+++|++||++.|.+...+.. +..++.|+.|++.+|++......++..+++|++|+|.+|.+...-|.
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence 99889999999999999999999876654 56689999999999999865667899999999999999999865554
Q ss_pred -CCccCccCcccccCCCCCCCCCC
Q 020203 303 -GGKLQSFGYTEYFHNRCLCGAPL 325 (329)
Q Consensus 303 -~~~l~~L~~l~l~~n~~~~~~~~ 325 (329)
+..+ .|++|-+..-.++|+|.+
T Consensus 435 AFe~m-~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 435 AFEPM-ELKELVMNSSSFLCDCQL 457 (873)
T ss_pred ccccc-hhhhhhhcccceEEeccH
Confidence 4666 899999999999999754
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=6.6e-25 Score=198.23 Aligned_cols=251 Identities=22% Similarity=0.237 Sum_probs=195.9
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
..++.+|+++|.+. .+|..+..-.++-.|+|++ |++..+.-+-|-+++.|-.||||+|++. .+|+.+..+..|+.|+
T Consensus 103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ccceeeecchhhhh-hcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence 34677788887774 4577777777777788887 6666644445567777778888888887 6777777777777777
Q ss_pred ccCCcCC-------------------------CCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcC
Q 020203 148 LSFNNLS-------------------------GTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQL 202 (329)
Q Consensus 148 l~~n~l~-------------------------~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 202 (329)
|++|.+. ..+|.++..+.+|..+|++.|.+. .+|+.+.++. +|+.|+|++|.+
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~-~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR-NLRRLNLSGNKI 257 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh-hhheeccCcCce
Confidence 7777543 135666777778888888888887 7888888887 888888888888
Q ss_pred cccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccce--eecCCCCCCCCCCEEEccCCcCccccchh
Q 020203 203 SGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLE--FNLSKVEFPQSLTNLDLNHNKIFGSIPAQ 279 (329)
Q Consensus 203 ~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 279 (329)
+ .+....+.. ++++|++|+|+++. +|..+.++++|+.|.+.+|.++ |.+..++.+.+|+.+..++|.+. .+|+.
T Consensus 258 t-eL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEg 334 (1255)
T KOG0444|consen 258 T-ELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEG 334 (1255)
T ss_pred e-eeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchh
Confidence 7 333333444 78888899998874 5677788899999999999765 56666888899999999999997 89999
Q ss_pred hcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCCCCCCCCCC
Q 020203 280 ITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLE 326 (329)
Q Consensus 280 ~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~~~~~~~ 326 (329)
++.|++|+.|.|+.|++...+....-++.|+.||+..||.+.-.|.|
T Consensus 335 lcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred hhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 99999999999999999854444577899999999999998766654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=2.3e-24 Score=194.73 Aligned_cols=243 Identities=23% Similarity=0.324 Sum_probs=185.0
Q ss_pred CcEEEEEeCCCCCCe-ecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEE
Q 020203 68 NRINSLTIFAGDLPG-QIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFL 146 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 146 (329)
.-|+.+|+++|.++| ..|..+.++++++.|.|.. ..+.. +|+.++.+.+|++|.+++|++. .+-..++.++.|+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 357888999999984 5888888999999999987 55544 7888999999999999999888 566677888888888
Q ss_pred EccCCcCCC-CCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCccccccc-ccCC-ccCEEEeeCC
Q 020203 147 ELSFNNLSG-TIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPAS-LGSM-DFNTIDLSRN 223 (329)
Q Consensus 147 ~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-l~~~-~L~~L~l~~n 223 (329)
++..|++.. .+|..+..+..|+.|||++|++. ..|..+.... ++-.|+|++|++. .+|.. |.++ .|-.||+|+|
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AK-n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAK-NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhc-CcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 888888763 46777778888888888888887 7788877777 7788888888887 45644 3344 6777888888
Q ss_pred cCccchhhhccCCCCCCEEEccCccce--------------------------eecCCCCCCCCCCEEEccCCcCccccc
Q 020203 224 KLEGDASFLFGLNKTTQRIDVSRNLLE--------------------------FNLSKVEFPQSLTNLDLNHNKIFGSIP 277 (329)
Q Consensus 224 ~l~~~~~~~~~~~~~L~~L~l~~n~l~--------------------------~~~~~~~~~~~L~~L~l~~n~l~~~~p 277 (329)
++...+ ..+..+..|++|++++|.+. ..++.+..+.+|..+|++.|.+. .+|
T Consensus 161 rLe~LP-PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLEMLP-PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhhhcC-HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 776543 34456666777777776543 12222445578888888888887 788
Q ss_pred hhhcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCC
Q 020203 278 AQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNR 318 (329)
Q Consensus 278 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~ 318 (329)
+.+-++++|+.|+|++|+++..--..+...+|+.|+++.|.
T Consensus 239 ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch
Confidence 88888889999999999888655555777788888888886
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=5.7e-25 Score=189.11 Aligned_cols=239 Identities=27% Similarity=0.389 Sum_probs=202.8
Q ss_pred cEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEc
Q 020203 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLEL 148 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 148 (329)
..+.+++..|.+. .+|++++.+..++.++.++ +++.. +|+.++.+.+|.+++.++|.+. .+++.++.+..++.++.
T Consensus 69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~-n~ls~-lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSH-NKLSE-LPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred ceeEEEeccchhh-hCCHHHHHHHHHHHhhccc-chHhh-ccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 3566777777775 4677788888888888888 66654 6778888888888888888888 78888888888888888
Q ss_pred cCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCcc
Q 020203 149 SFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEG 227 (329)
Q Consensus 149 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~ 227 (329)
.+|+++ ..|+.++.+.++..+++.+|.+. ..|+...++. .|++++...|.+. .+|+.++.+ +|.-|++.+|.+..
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~-~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMK-RLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF 220 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHH-HHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc
Confidence 888888 78888888888889999999888 6666666687 8999999998887 789999998 89999999999975
Q ss_pred chhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCcc
Q 020203 228 DASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKL 306 (329)
Q Consensus 228 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l 306 (329)
.+ .|.++..|++++++.|.+...+.. .++++++..||+++|++. +.|..+..+.+|.+||+++|.+++..+..+++
T Consensus 221 lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl 297 (565)
T KOG0472|consen 221 LP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL 297 (565)
T ss_pred CC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc
Confidence 54 688999999999999999854433 467889999999999998 89999999999999999999999988888999
Q ss_pred CccCcccccCCCC
Q 020203 307 QSFGYTEYFHNRC 319 (329)
Q Consensus 307 ~~L~~l~l~~n~~ 319 (329)
.|+.+-+.|||.
T Consensus 298 -hL~~L~leGNPl 309 (565)
T KOG0472|consen 298 -HLKFLALEGNPL 309 (565)
T ss_pred -eeeehhhcCCch
Confidence 999999999985
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=1.3e-23 Score=180.82 Aligned_cols=90 Identities=22% Similarity=0.244 Sum_probs=65.7
Q ss_pred hhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCc----------------------cccchh-hcCCCCCC
Q 020203 231 FLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIF----------------------GSIPAQ-ITSLENLG 287 (329)
Q Consensus 231 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~----------------------~~~p~~-~~~l~~L~ 287 (329)
..++.+++|..|++++|.+...+.....+..|++|+++.|+|. +.++.. +.++.+|+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 3344456666677776666654444555556777777777654 123333 67889999
Q ss_pred EEEeecCcCcccCCCCCccCccCcccccCCCCC
Q 020203 288 FLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCL 320 (329)
Q Consensus 288 ~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~ 320 (329)
.||+.+|.+...+|..+++.+|+.+++.|||+-
T Consensus 509 tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 999999999977777899999999999999986
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=3.8e-19 Score=171.58 Aligned_cols=247 Identities=21% Similarity=0.327 Sum_probs=123.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCCC----CCCCCCCcCccc----------------eEecCCCCcEEEEEe------
Q 020203 22 SDLCNPNDKKVLLKFKKSLNNPYVLAS----WNPKTDCCDWYC----------------VTCDLTTNRINSLTI------ 75 (329)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~~~~----w~~~~~~c~~~g----------------v~c~~~~~~v~~l~l------ 75 (329)
.....++|...++++.+.+..|.+..+ |..++++|.-.. |.|.. ..|+.+.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~~~ 134 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESEQA 134 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Cccccccccccccc
Confidence 455668899999999999988875555 988888885322 55532 33443332
Q ss_pred ---------------------------------------------------CCCCCCeecCcCCCCCCCCCEEeCCCCCC
Q 020203 76 ---------------------------------------------------FAGDLPGQIPPEVGDLPYLETLMFHKLPS 104 (329)
Q Consensus 76 ---------------------------------------------------~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 104 (329)
++++++. +|..+. ++++.|++++ |.
T Consensus 135 ~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~-N~ 210 (754)
T PRK15370 135 SSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT-IPACIP--EQITTLILDN-NE 210 (754)
T ss_pred ccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc-CCcccc--cCCcEEEecC-CC
Confidence 2222221 222221 2455555555 44
Q ss_pred CCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChh
Q 020203 105 LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPES 184 (329)
Q Consensus 105 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~ 184 (329)
++. +|..+. .+|++|++++|.++ .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|++. .+|..
T Consensus 211 Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~ 280 (754)
T PRK15370 211 LKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPEN 280 (754)
T ss_pred CCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccc
Confidence 443 333332 35556666665555 3443332 34555555555555 4444332 35556666666555 44543
Q ss_pred hhhcCCCCCeEEcccCcCcccccccccCCccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCE
Q 020203 185 FGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTN 264 (329)
Q Consensus 185 ~~~~~~~L~~L~l~~n~l~~~~p~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 264 (329)
+. . +|+.|++++|+++. +|..+.. +|+.|++++|.++..+.. + .++|++|++++|.+++.+..+ +++|+.
T Consensus 281 l~--~-sL~~L~Ls~N~Lt~-LP~~lp~-sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~ 350 (754)
T PRK15370 281 LP--E-ELRYLSVYDNSIRT-LPAHLPS-GITHLNVQSNSLTALPET-L--PPGLKTLEAGENALTSLPASL--PPELQV 350 (754)
T ss_pred cC--C-CCcEEECCCCcccc-Ccccchh-hHHHHHhcCCccccCCcc-c--cccceeccccCCccccCChhh--cCcccE
Confidence 32 2 55666666665552 3332211 344444444444432211 1 134555555555554322211 245555
Q ss_pred EEccCCcCccccchhhcCCCCCCEEEeecCcCc
Q 020203 265 LDLNHNKIFGSIPAQITSLENLGFLNVSYNRLC 297 (329)
Q Consensus 265 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 297 (329)
|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 351 L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 351 LDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred EECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 555555554 3444332 34555555555554
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=2.5e-21 Score=166.36 Aligned_cols=255 Identities=20% Similarity=0.191 Sum_probs=194.3
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccC-ccCCccCcccccCCCCCCEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISW-TNISGPVPDFISQLTNLTFL 146 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L 146 (329)
...+.|+|..|.++...+.+|..+++|+.|+|++ |.++.+-|.+|.++++|..|-+.+ |+|+..-...|+++..|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 4578889999998877777899999999999999 889988899999998887765544 88886666678888888888
Q ss_pred EccCCcCCCCCCccCCCCCCCCEEecccccCcccCCh-hhhhcCCCCCeEEcccCcCc------------ccccccccCC
Q 020203 147 ELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPE-SFGTFTGSIPDLYLSHNQLS------------GKIPASLGSM 213 (329)
Q Consensus 147 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~------------~~~p~~l~~~ 213 (329)
.+.-|++.-...+.|..++++..|.+.+|.+. .+++ .+..+. .++.+.+..|.+. ...|..++..
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~-~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLA-AIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchh-ccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 88888888677778888888888888888887 5554 566666 7777777777621 1112222111
Q ss_pred -----------------------ccCEE--Eee-CCcCccc-hhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEE
Q 020203 214 -----------------------DFNTI--DLS-RNKLEGD-ASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNL 265 (329)
Q Consensus 214 -----------------------~L~~L--~l~-~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L 265 (329)
.++.+ .++ .+...+. +..-|+++++|++|++++|.+++.-+. +.....+++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 01111 111 1112222 235588999999999999999976554 7778899999
Q ss_pred EccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccCCCCCCCCCC
Q 020203 266 DLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNRCLCGAPL 325 (329)
Q Consensus 266 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~~~~~~~~ 325 (329)
.|..|++...--..|.++..|+.|+|++|+++..-|. +..+.+|.++++.+||+.|+|-+
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 9999999866667889999999999999999987775 57788999999999999999754
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=3.7e-18 Score=174.52 Aligned_cols=243 Identities=19% Similarity=0.210 Sum_probs=145.6
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
..++.|++.++.+. .++..+..+++|+.|++++++.+ +.+| .+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNL-KEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCc-CcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 46778888887764 46667777888888888773333 3344 467778888888887765557777777778888888
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCc--------------------------
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQ-------------------------- 201 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-------------------------- 201 (329)
+++|..-..+|..+ ++++|+.|++++|.....+|.. .. +|++|++++|.
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~-nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---ST-NISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cC-CcCeeecCCCccccccccccccccccccccccchhhc
Confidence 87765444666544 5666666666665433333321 11 34444444444
Q ss_pred ---------------------------CcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeec
Q 020203 202 ---------------------------LSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNL 253 (329)
Q Consensus 202 ---------------------------l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 253 (329)
..+.+|..++.+ +|+.|++++|...+.+|..+ .+++|+.|++++|.....+
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 333344444444 44444444443222233222 3444444444444322222
Q ss_pred CCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccCCCCCCC
Q 020203 254 SKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNRCLCG 322 (329)
Q Consensus 254 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~~~~~ 322 (329)
|. .+.+|++|++++|.++ .+|.++..+++|+.|++++|+-...+|. ...+++|+.+++.+++.+..
T Consensus 842 p~--~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 842 PD--ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred cc--cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 22 1346778888888877 6788888888888888888543334444 46777888888887776643
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=7.7e-19 Score=169.45 Aligned_cols=224 Identities=22% Similarity=0.373 Sum_probs=173.7
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
..++.+++++|.++ .+|..+. .+|++|++++ |.++. +|..+. .+|+.|++++|.+. .+|..+. .+|+.|+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~-N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANS-NQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCC-Ccccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 46889999999997 4666554 5899999999 77874 565553 47999999999998 7777664 5899999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCCccCEEEeeCCcCcc
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEG 227 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~~L~~L~l~~n~l~~ 227 (329)
+++|+++ .+|..+. ++|+.|++++|.++ .+|..+. . +|+.|++++|.++. +|..+. .+|+.|++++|.+++
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~-sL~~L~Ls~N~Lt~-LP~~l~-~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--S-GITHLNVQSNSLTA-LPETLP-PGLKTLEAGENALTS 339 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--h-hHHHHHhcCCcccc-CCcccc-ccceeccccCCcccc
Confidence 9999998 6777664 58999999999998 5676543 2 78999999999984 565443 289999999999987
Q ss_pred chhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-C---
Q 020203 228 DASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-G--- 303 (329)
Q Consensus 228 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~--- 303 (329)
.+ ..+ .++|+.|++++|.++..+..+ +++|++|++++|+++ .+|..+. ..|+.|++++|++.+ +|. .
T Consensus 340 LP-~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~ 410 (754)
T PRK15370 340 LP-ASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVR-LPESLPHF 410 (754)
T ss_pred CC-hhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCccc-CchhHHHH
Confidence 54 333 368999999999988543322 468999999999998 6776654 368999999999984 443 1
Q ss_pred -CccCccCcccccCCCC
Q 020203 304 -GKLQSFGYTEYFHNRC 319 (329)
Q Consensus 304 -~~l~~L~~l~l~~n~~ 319 (329)
...+.+..+++.+|+.
T Consensus 411 ~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 411 RGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hhcCCCccEEEeeCCCc
Confidence 3457788889999885
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=1.3e-17 Score=170.50 Aligned_cols=246 Identities=19% Similarity=0.158 Sum_probs=170.8
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
..++.+.+.++.+ ..+|..+ ...+|++|++.+ +.+.. ++..+..+++|+.++++++.....+|. +..+++|+.|+
T Consensus 589 ~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~-s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQG-SKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCC-CCCCCcC-CccCCcEEECcC-ccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 4578888888766 4567766 578999999999 66654 667788899999999998865557774 88899999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCCccCEEEeeC-----
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSR----- 222 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~~L~~L~l~~----- 222 (329)
+++|.....+|..+..+++|+.|++++|..-..+|..+ ++. +|+.|++++|.....+|.... +|+.|++++
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~-sL~~L~Lsgc~~L~~~p~~~~--nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK-SLYRLNLSGCSRLKSFPDIST--NISWLDLDETAIEE 739 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC-CCCEEeCCCCCCccccccccC--CcCeeecCCCcccc
Confidence 99998777899999999999999999976555788765 566 999999999876545543211 344444444
Q ss_pred ------------------------------------------------CcCccchhhhccCCCCCCEEEccCccceeecC
Q 020203 223 ------------------------------------------------NKLEGDASFLFGLNKTTQRIDVSRNLLEFNLS 254 (329)
Q Consensus 223 ------------------------------------------------n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 254 (329)
|...+.+|..++++++|+.|++++|..-+.+|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 44333444455555566666665553322333
Q ss_pred CCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCCCCCCCCC
Q 020203 255 KVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPL 325 (329)
Q Consensus 255 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~~~~~~ 325 (329)
....+++|++|++++|.....+|.. ..+|+.|++++|.+.........+++|+.+++.+++.+...|.
T Consensus 820 ~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 820 TGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 3224456666666665433344432 2467777777777764322357788999999999887776544
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=1.6e-20 Score=176.59 Aligned_cols=242 Identities=24% Similarity=0.304 Sum_probs=189.0
Q ss_pred cEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEc
Q 020203 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLEL 148 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 148 (329)
+.+.++.+.|.+....+. ..-.+|+++++++ +.+++ +|+.+..+.+|+.++..+|.++ .+|..+....+|+.+.+
T Consensus 220 ~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~-n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVH--PVPLNLQYLDISH-NNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred chheeeeccCcceeeccc--cccccceeeecch-hhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 345555555555422221 2233688888888 67766 5677788888888888888886 78888888888888888
Q ss_pred cCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcC-------------------------CCCCeEEcccCcCc
Q 020203 149 SFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFT-------------------------GSIPDLYLSHNQLS 203 (329)
Q Consensus 149 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-------------------------~~L~~L~l~~n~l~ 203 (329)
.+|.+. .+|+...+++.|++|+|..|.+. .+|+.+.... +.|+.|++.+|.++
T Consensus 295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 888887 77778888899999999998886 5665332211 25777888889988
Q ss_pred ccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcC
Q 020203 204 GKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITS 282 (329)
Q Consensus 204 ~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 282 (329)
...-+.+... +|+.|+|++|++..++...+.++..|+.|++++|.++..+..+.....|++|...+|++. .+| .+..
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~ 450 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ 450 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence 7666666666 999999999999988888899999999999999999976666777789999999999998 788 7889
Q ss_pred CCCCCEEEeecCcCcc-cCCCCCccCccCcccccCCCC
Q 020203 283 LENLGFLNVSYNRLCG-PIPVGGKLQSFGYTEYFHNRC 319 (329)
Q Consensus 283 l~~L~~L~l~~n~l~~-~~p~~~~l~~L~~l~l~~n~~ 319 (329)
++.|+.+|++.|+++. .+|...--++|++||++||++
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 9999999999999985 344433338999999999996
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=2e-17 Score=159.09 Aligned_cols=114 Identities=25% Similarity=0.219 Sum_probs=62.8
Q ss_pred CCCeEEcccCcCcccccccccCCccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCC
Q 020203 191 SIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHN 270 (329)
Q Consensus 191 ~L~~L~l~~n~l~~~~p~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 270 (329)
+|+.|++++|+++. +|... .+|+.|++++|.++.. |.. ..+|+.|++++|.+++.+. .+++|+.|++++|
T Consensus 343 ~Lq~LdLS~N~Ls~-LP~lp--~~L~~L~Ls~N~L~~L-P~l---~~~L~~LdLs~N~Lt~LP~---l~s~L~~LdLS~N 412 (788)
T PRK15387 343 GLQELSVSDNQLAS-LPTLP--SELYKLWAYNNRLTSL-PAL---PSGLKELIVSGNRLTSLPV---LPSELKELMVSGN 412 (788)
T ss_pred ccceEecCCCccCC-CCCCC--cccceehhhccccccC-ccc---ccccceEEecCCcccCCCC---cccCCCEEEccCC
Confidence 45555555555552 33211 1344445555554432 211 2356667777776664322 1246777777777
Q ss_pred cCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccCCCC
Q 020203 271 KIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNRC 319 (329)
Q Consensus 271 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~~ 319 (329)
+++ .+|.. ..+|+.|++++|+++ .+|. +.++++|..+++++|+.
T Consensus 413 ~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 413 RLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 776 35543 235666777777776 3554 46677777777777764
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.7e-19 Score=159.11 Aligned_cols=249 Identities=18% Similarity=0.208 Sum_probs=182.1
Q ss_pred cEEEEEeCCCCCCee----cCcCCCCCCCCCEEeCCCCCCCCC------CChhhhcCCCCCCEEeccCccCCccCccccc
Q 020203 69 RINSLTIFAGDLPGQ----IPPEVGDLPYLETLMFHKLPSLTG------PIQPAIAKLKNLKTLRISWTNISGPVPDFIS 138 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~l~~------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 138 (329)
.++.++++++.+++. ++..+...+.++.+++++ +.+.+ .++..+..+++|++|++++|.+.+..+..+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSL-NETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccc-cccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 478889999888543 455667788899999988 55552 2445677889999999999998866666565
Q ss_pred CCCC---CCEEEccCCcCCC----CCCccCCCC-CCCCEEecccccCccc----CChhhhhcCCCCCeEEcccCcCccc-
Q 020203 139 QLTN---LTFLELSFNNLSG----TIPGSLSKL-QKLGALHLDRNKLTGS----IPESFGTFTGSIPDLYLSHNQLSGK- 205 (329)
Q Consensus 139 ~l~~---L~~L~l~~n~l~~----~~p~~l~~l-~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~l~~n~l~~~- 205 (329)
.+.+ |++|++++|++.+ .+...+..+ ++|+.|++++|.+++. ++..+.... +|++|++++|.+++.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR-DLKELNLANNGIGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC-CcCEEECcCCCCchHH
Confidence 5555 9999999999873 233445666 8999999999998843 334455555 899999999998853
Q ss_pred ---ccccccCC-ccCEEEeeCCcCccch----hhhccCCCCCCEEEccCccceeecC-CC-----CCCCCCCEEEccCCc
Q 020203 206 ---IPASLGSM-DFNTIDLSRNKLEGDA----SFLFGLNKTTQRIDVSRNLLEFNLS-KV-----EFPQSLTNLDLNHNK 271 (329)
Q Consensus 206 ---~p~~l~~~-~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~-~~-----~~~~~L~~L~l~~n~ 271 (329)
++..+... .|+.|++++|.+++.. ...+..+++|++|++++|.+++... .+ ...+.|++|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 22333333 7999999999987543 3456678899999999998875211 11 123689999999999
Q ss_pred Ccc----ccchhhcCCCCCCEEEeecCcCccc----CCC-CCcc-CccCcccccCCCC
Q 020203 272 IFG----SIPAQITSLENLGFLNVSYNRLCGP----IPV-GGKL-QSFGYTEYFHNRC 319 (329)
Q Consensus 272 l~~----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~-~~~l-~~L~~l~l~~n~~ 319 (329)
+++ .+...+..+++|+++++++|++... +.. .... ..|+.+++.+|++
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 872 3455667778999999999999854 221 2334 6789999998874
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=3.4e-19 Score=158.48 Aligned_cols=247 Identities=21% Similarity=0.217 Sum_probs=180.4
Q ss_pred EEEeCCCCCCe-ecCcCCCCCCCCCEEeCCCCCCCCCC----ChhhhcCCCCCCEEeccCccCCc------cCcccccCC
Q 020203 72 SLTIFAGDLPG-QIPPEVGDLPYLETLMFHKLPSLTGP----IQPAIAKLKNLKTLRISWTNISG------PVPDFISQL 140 (329)
Q Consensus 72 ~l~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~------~~~~~~~~l 140 (329)
.|++..+.+.+ .....+..+..|+++++++ +.++.. ++..+...+.+++++++++.+.+ .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~-~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEG-NTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecC-CCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 35666777763 3444556677899999999 666443 55566778889999999998772 234567788
Q ss_pred CCCCEEEccCCcCCCCCCccCCCCCC---CCEEecccccCcc----cCChhhhhc-CCCCCeEEcccCcCcccc----cc
Q 020203 141 TNLTFLELSFNNLSGTIPGSLSKLQK---LGALHLDRNKLTG----SIPESFGTF-TGSIPDLYLSHNQLSGKI----PA 208 (329)
Q Consensus 141 ~~L~~L~l~~n~l~~~~p~~l~~l~~---L~~L~l~~n~l~~----~~~~~~~~~-~~~L~~L~l~~n~l~~~~----p~ 208 (329)
++|+.|++++|.+.+..+..+..+.+ |++|++++|.+.+ .+...+... . +|++|++++|.+++.. +.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP-ALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCC-CceEEEcCCCcCCchHHHHHHH
Confidence 99999999999998666665555544 9999999999873 233455555 5 8999999999998533 33
Q ss_pred cccCC-ccCEEEeeCCcCccc----hhhhccCCCCCCEEEccCccceeec-----CCCCCCCCCCEEEccCCcCccccch
Q 020203 209 SLGSM-DFNTIDLSRNKLEGD----ASFLFGLNKTTQRIDVSRNLLEFNL-----SKVEFPQSLTNLDLNHNKIFGSIPA 278 (329)
Q Consensus 209 ~l~~~-~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~~~L~~L~l~~n~l~~~~p~ 278 (329)
.+... +|++|++++|.+++. .+..+...++|++|++++|.+++.. ..+...++|++|++++|.+++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 34444 799999999999853 3344566689999999999987432 1245568999999999999863333
Q ss_pred hhc-----CCCCCCEEEeecCcCc--cc--CC-CCCccCccCcccccCCCCC
Q 020203 279 QIT-----SLENLGFLNVSYNRLC--GP--IP-VGGKLQSFGYTEYFHNRCL 320 (329)
Q Consensus 279 ~~~-----~l~~L~~L~l~~n~l~--~~--~p-~~~~l~~L~~l~l~~n~~~ 320 (329)
.+. ..+.|++|++++|.++ +. +. ....++.|+.+++++|+.-
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 332 2479999999999997 22 11 1245588999999999753
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=3e-20 Score=142.87 Aligned_cols=179 Identities=29% Similarity=0.411 Sum_probs=117.5
Q ss_pred cCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCC
Q 020203 114 AKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIP 193 (329)
Q Consensus 114 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 193 (329)
-++.+.+.|.+++|+++ .+|+.+..+.+|+.|++++|++. .+|.+++.+++|++|+++-|++. ..|..|+.++ .|+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p-~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP-ALE 105 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc-hhh
Confidence 34556667777777777 66666777777777777777776 66777777777777777777766 6677777776 677
Q ss_pred eEEcccCcCcc-cccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCc
Q 020203 194 DLYLSHNQLSG-KIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNK 271 (329)
Q Consensus 194 ~L~l~~n~l~~-~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 271 (329)
.|++.+|++.. .+|..|..+ .|+.|.+++|.+ .-.++..+.+.+|+.|.+.+|.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndf------------------------e~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF------------------------EILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCc------------------------ccCChhhhhhcceeEEeeccCc
Confidence 77777776653 334444444 455555555544 4444445566677777777777
Q ss_pred CccccchhhcCCCCCCEEEeecCcCcccCCCCCccC---ccCcccccCCCCCC
Q 020203 272 IFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQ---SFGYTEYFHNRCLC 321 (329)
Q Consensus 272 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~---~L~~l~l~~n~~~~ 321 (329)
+- ++|..++.+..|+.|++++|+++-..|..+++. +-..+.+..|||+.
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 66 677777777777888888887776555544332 33445566677664
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=6.5e-17 Score=155.58 Aligned_cols=207 Identities=25% Similarity=0.308 Sum_probs=141.4
Q ss_pred cEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhc-----------------CCCCCCEEeccCccCCc
Q 020203 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIA-----------------KLKNLKTLRISWTNISG 131 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~-----------------~l~~L~~L~Ls~n~l~~ 131 (329)
+++.|++..|+++. +|. ..++|++|++++ |.++. +|.... -...|+.|++++|+++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~-N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt- 295 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSG-NQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT- 295 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecC-CccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-
Confidence 45666666666653 343 135666666666 55553 221110 0123444555555554
Q ss_pred cCcccccCCCCCCEEEccCCcCCCCCCc---cC----------C---CC-CCCCEEecccccCcccCChhhhhcCCCCCe
Q 020203 132 PVPDFISQLTNLTFLELSFNNLSGTIPG---SL----------S---KL-QKLGALHLDRNKLTGSIPESFGTFTGSIPD 194 (329)
Q Consensus 132 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~---~l----------~---~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 194 (329)
.+|. ..++|+.|++++|++++ +|. .+ . .+ .+|+.|++++|+++ .+|.. ..+|+.
T Consensus 296 ~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l----p~~L~~ 366 (788)
T PRK15387 296 SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL----PSELYK 366 (788)
T ss_pred cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC----Ccccce
Confidence 3333 23567777777777763 322 11 1 11 37899999999998 56652 237899
Q ss_pred EEcccCcCcccccccccCCccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCcc
Q 020203 195 LYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFG 274 (329)
Q Consensus 195 L~l~~n~l~~~~p~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 274 (329)
|++++|.++ .+|... .+|+.|++++|.+++.+. . .++|+.|++++|.++.. |. .+.+|+.|++++|+++
T Consensus 367 L~Ls~N~L~-~LP~l~--~~L~~LdLs~N~Lt~LP~-l---~s~L~~LdLS~N~LssI-P~--l~~~L~~L~Ls~NqLt- 435 (788)
T PRK15387 367 LWAYNNRLT-SLPALP--SGLKELIVSGNRLTSLPV-L---PSELKELMVSGNRLTSL-PM--LPSGLLSLSVYRNQLT- 435 (788)
T ss_pred ehhhccccc-cCcccc--cccceEEecCCcccCCCC-c---ccCCCEEEccCCcCCCC-Cc--chhhhhhhhhccCccc-
Confidence 999999998 466532 278999999999987443 2 36799999999999864 43 2457999999999998
Q ss_pred ccchhhcCCCCCCEEEeecCcCcccCCC
Q 020203 275 SIPAQITSLENLGFLNVSYNRLCGPIPV 302 (329)
Q Consensus 275 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 302 (329)
.+|..+..+++|+.|++++|++++.+|.
T Consensus 436 ~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 436 RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 8999999999999999999999987554
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=3.3e-19 Score=137.23 Aligned_cols=178 Identities=25% Similarity=0.396 Sum_probs=100.8
Q ss_pred CCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCC
Q 020203 88 VGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKL 167 (329)
Q Consensus 88 l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 167 (329)
+.++.+++.|.+++ |+++. +|+.+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. .+|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSH-NKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSH-NKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhccc-Cceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 33445555556666 55543 3445666666666666666666 56666666666666666666665 566666666666
Q ss_pred CEEecccccCc-ccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEcc
Q 020203 168 GALHLDRNKLT-GSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVS 245 (329)
Q Consensus 168 ~~L~l~~n~l~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 245 (329)
+.||+.+|.+. ..+|..|..+. .|+.|+++.|.+. .+|..++++ +|+.|.+.+|.+-. +|..++.+..|+.|.+.
T Consensus 105 evldltynnl~e~~lpgnff~m~-tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMT-TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhccccccccccCCcchhHHH-HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcc
Confidence 66666666554 24555566555 5666666666665 455556665 66666666666543 33444555556666666
Q ss_pred CccceeecCCCCCC---CCCCEEEccCCcC
Q 020203 246 RNLLEFNLSKVEFP---QSLTNLDLNHNKI 272 (329)
Q Consensus 246 ~n~l~~~~~~~~~~---~~L~~L~l~~n~l 272 (329)
+|.++..+|.+..+ .+-+...+.+|..
T Consensus 182 gnrl~vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 182 GNRLTVLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred cceeeecChhhhhhhhhhhHHHHhhhhCCC
Confidence 66666544443221 1223444555544
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.68 E-value=3.6e-16 Score=150.04 Aligned_cols=153 Identities=26% Similarity=0.481 Sum_probs=107.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCc----CccceEecCCC----CcEEEEEeCCCCCCeecCcCCCCCCC
Q 020203 22 SDLCNPNDKKVLLKFKKSLNNPYVLASWNPKTDCC----DWYCVTCDLTT----NRINSLTIFAGDLPGQIPPEVGDLPY 93 (329)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~c----~~~gv~c~~~~----~~v~~l~l~~~~l~~~~~~~l~~l~~ 93 (329)
.....++|..||.++|.+++++.. .+|.. +.|+ .|.|+.|.... ..|+.|+++++.+.|.+|..+..+++
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~-~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~ 443 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLR-FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH 443 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCccc-CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence 345567899999999999976532 47853 3332 69999995321 24778888888777777777777777
Q ss_pred CCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCC-CCCCEEec
Q 020203 94 LETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKL-QKLGALHL 172 (329)
Q Consensus 94 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~l 172 (329)
|+.|++++ |.+.|.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|+++|.+|..++.. .++..+++
T Consensus 444 L~~L~Ls~-N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 444 LQSINLSG-NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCEEECCC-CcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 77777777 67777777777777777777777777777777777777777777777777777777666543 34556666
Q ss_pred ccccC
Q 020203 173 DRNKL 177 (329)
Q Consensus 173 ~~n~l 177 (329)
.+|..
T Consensus 523 ~~N~~ 527 (623)
T PLN03150 523 TDNAG 527 (623)
T ss_pred cCCcc
Confidence 66543
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=5.2e-18 Score=159.86 Aligned_cols=220 Identities=26% Similarity=0.349 Sum_probs=181.2
Q ss_pred CCCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCE
Q 020203 66 TTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTF 145 (329)
Q Consensus 66 ~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 145 (329)
.....+.++++.+++.+ +|.-++.+.+|+.++..+ |.+ ..+|..+....+|+.+...+|.+. .+|+...++..|+.
T Consensus 239 ~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~-N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANH-NRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRT 314 (1081)
T ss_pred ccccceeeecchhhhhc-chHHHHhcccceEecccc-hhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeee
Confidence 34578899999999876 568889999999999999 788 447788888899999999999999 78888888999999
Q ss_pred EEccCCcCCCCCCccC--------------------------CCCCCCCEEecccccCcccCChhhhhcCCCCCeEEccc
Q 020203 146 LELSFNNLSGTIPGSL--------------------------SKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSH 199 (329)
Q Consensus 146 L~l~~n~l~~~~p~~l--------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 199 (329)
|+|..|++. .+|+.+ ..++.|+.|++.+|.++...-+.+.++. .|+.|+|++
T Consensus 315 LdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsy 392 (1081)
T KOG0618|consen 315 LDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK-HLKVLHLSY 392 (1081)
T ss_pred eeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc-ceeeeeecc
Confidence 999999887 444321 1235688899999999987777788888 999999999
Q ss_pred CcCccccccc-ccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCcc-cc
Q 020203 200 NQLSGKIPAS-LGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFG-SI 276 (329)
Q Consensus 200 n~l~~~~p~~-l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~-~~ 276 (329)
|++. .+|++ +.++ .|++|++|+|.++..+ +.+..++.|++|...+|.+...+ .+..++.|+.+|++.|+++- .+
T Consensus 393 NrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 393 NRLN-SFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred cccc-cCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhh
Confidence 9998 67755 4555 8999999999998654 77888999999999999999544 77888999999999999874 34
Q ss_pred chhhcCCCCCCEEEeecCc
Q 020203 277 PAQITSLENLGFLNVSYNR 295 (329)
Q Consensus 277 p~~~~~l~~L~~L~l~~n~ 295 (329)
|... ..++|++||+++|.
T Consensus 470 ~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 470 PEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhC-CCcccceeeccCCc
Confidence 4433 34899999999997
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.65 E-value=2.6e-18 Score=148.00 Aligned_cols=231 Identities=19% Similarity=0.166 Sum_probs=180.3
Q ss_pred CCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccC-CcCCCCCCccCCCCCCCCEEe
Q 020203 93 YLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSF-NNLSGTIPGSLSKLQKLGALH 171 (329)
Q Consensus 93 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~ 171 (329)
...+++|.. |.++...+.+|+.+++|+.|||++|.|+.+-|++|.++++|..|-+.+ |+|+....+.|+++..++.|.
T Consensus 68 ~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 567788888 899998889999999999999999999999999999999998887776 999966667899999999999
Q ss_pred cccccCcccCChhhhhcCCCCCeEEcccCcCcccccc-cccCC-ccCEEEeeCCcCcc------------chhhhccCCC
Q 020203 172 LDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPA-SLGSM-DFNTIDLSRNKLEG------------DASFLFGLNK 237 (329)
Q Consensus 172 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~l~~~-~L~~L~l~~n~l~~------------~~~~~~~~~~ 237 (329)
+.-|++.-...+.+..++ ++..|.+..|.+. .++. .|..+ .++.+.+..|.+-. ..+..+++..
T Consensus 147 lNan~i~Cir~~al~dL~-~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLP-SLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred cChhhhcchhHHHHHHhh-hcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 999999977778888888 9999999999988 4444 67666 78888888877321 1222233222
Q ss_pred CCCEEEccCc-------------------------cceeecCC--CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEE
Q 020203 238 TTQRIDVSRN-------------------------LLEFNLSK--VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLN 290 (329)
Q Consensus 238 ~L~~L~l~~n-------------------------~l~~~~~~--~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 290 (329)
......+.+. ...+.-|. ++.+++|+.|++++|++++.-+.+|.+...++.|+
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 2211111111 11112222 56789999999999999998899999999999999
Q ss_pred eecCcCcccCC-CCCccCccCcccccCCCCCCCCCCC
Q 020203 291 VSYNRLCGPIP-VGGKLQSFGYTEYFHNRCLCGAPLE 326 (329)
Q Consensus 291 l~~n~l~~~~p-~~~~l~~L~~l~l~~n~~~~~~~~~ 326 (329)
|..|++...-. .+..+..|+.|+|++|+.-|-.|..
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence 99999974322 3578899999999999987765553
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.37 E-value=2.5e-12 Score=123.72 Aligned_cols=111 Identities=30% Similarity=0.526 Sum_probs=91.1
Q ss_pred CCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEec
Q 020203 93 YLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHL 172 (329)
Q Consensus 93 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 172 (329)
.++.|+|++ +.+.|.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|++++|++++.+|..++.+++|+.|++
T Consensus 419 ~v~~L~L~~-n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDN-QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCC-CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 467788888 7888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccccCcccCChhhhhcCCCCCeEEcccCcCcc
Q 020203 173 DRNKLTGSIPESFGTFTGSIPDLYLSHNQLSG 204 (329)
Q Consensus 173 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 204 (329)
++|.+.|.+|..+.....++..+++.+|....
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcccc
Confidence 88888888888777643356777777776543
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.36 E-value=1.2e-12 Score=120.08 Aligned_cols=197 Identities=30% Similarity=0.437 Sum_probs=152.0
Q ss_pred EEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCC-CCCEEEccCCcCCCCCCccCCCCCCCCEEeccc
Q 020203 96 TLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLT-NLTFLELSFNNLSGTIPGSLSKLQKLGALHLDR 174 (329)
Q Consensus 96 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 174 (329)
.++... +.+...+ ..+..++.++.+++.+|.++ .+++...... +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus 97 ~l~~~~-~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNL-NRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccc-cccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 456655 4443322 34556688999999999999 7777777774 8999999999998 6666788999999999999
Q ss_pred ccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeec
Q 020203 175 NKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNL 253 (329)
Q Consensus 175 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 253 (329)
|++. .+|....... .|+.|++++|++. .+|...+.. .|+++++++|.... .+..+...+++..+.+.+|.+...+
T Consensus 173 N~l~-~l~~~~~~~~-~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLS-NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDLP 248 (394)
T ss_pred chhh-hhhhhhhhhh-hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeecc
Confidence 9998 7777665666 8999999999998 567665455 69999999996332 3344567788888888888888655
Q ss_pred CCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC
Q 020203 254 SKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV 302 (329)
Q Consensus 254 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 302 (329)
.....++.+++|++++|+++ .++. ++...+++.+++++|.+...+|.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 55677778999999999998 4554 78889999999999988766554
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=3e-14 Score=128.40 Aligned_cols=194 Identities=25% Similarity=0.385 Sum_probs=162.6
Q ss_pred CCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCe
Q 020203 115 KLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPD 194 (329)
Q Consensus 115 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 194 (329)
.+.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|++++++.|+++ .+|..++.++ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--cee
Confidence 4455567899999999 89988888999999999999998 88999999999999999999998 8999998885 999
Q ss_pred EEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCc
Q 020203 195 LYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIF 273 (329)
Q Consensus 195 L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 273 (329)
|.+++|+++ .+|+.++.. +|..||.+.|.+... |..++++.+|+.|.+..|++...++.+..+ .|..||++.|++.
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee
Confidence 999999998 789888855 899999999999754 455678899999999999998766665533 5899999999998
Q ss_pred cccchhhcCCCCCCEEEeecCcCcccCCCC---CccCccCcccccCC
Q 020203 274 GSIPAQITSLENLGFLNVSYNRLCGPIPVG---GKLQSFGYTEYFHN 317 (329)
Q Consensus 274 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~---~~l~~L~~l~l~~n 317 (329)
.+|-.|..+..|++|-|.+|.+..+.... +...-.++|+....
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 89999999999999999999998543322 55555666665543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=3e-14 Score=128.45 Aligned_cols=195 Identities=28% Similarity=0.415 Sum_probs=161.5
Q ss_pred CCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCE
Q 020203 90 DLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGA 169 (329)
Q Consensus 90 ~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 169 (329)
.+..-...+++. |.+.. +|..+..+..|+.+.+..|.+. .+|..+..+..|.+++++.|+++ .+|..+..++ |+.
T Consensus 73 ~ltdt~~aDlsr-NR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSR-NRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccc-ccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 444455567777 66654 7778888889999999999998 88999999999999999999998 8888887776 889
Q ss_pred EecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCcc
Q 020203 170 LHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNL 248 (329)
Q Consensus 170 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 248 (329)
|.+++|+++ .+|+.++... .|..|+.+.|.+. .+|..++.+ +|+.|.+.+|++...+++.. .-.|..||++.|+
T Consensus 148 li~sNNkl~-~lp~~ig~~~-tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~--~LpLi~lDfScNk 222 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLP-TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC--SLPLIRLDFSCNK 222 (722)
T ss_pred EEEecCccc-cCCcccccch-hHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh--CCceeeeecccCc
Confidence 999999998 8999999665 9999999999998 678888888 99999999999987665543 4458999999999
Q ss_pred ceeecCCCCCCCCCCEEEccCCcCccccchhhcCCC---CCCEEEeecCc
Q 020203 249 LEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLE---NLGFLNVSYNR 295 (329)
Q Consensus 249 l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~---~L~~L~l~~n~ 295 (329)
+...+-.+..+++|++|-|.+|.++ +.|..+...- -.++|+.+-++
T Consensus 223 is~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 223 ISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 9977777999999999999999998 7777765433 34667777774
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.25 E-value=7.2e-12 Score=114.84 Aligned_cols=193 Identities=30% Similarity=0.422 Sum_probs=158.1
Q ss_pred CEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCC-CCCEEecccccCcccCChhhhhcCCCCCeEEcc
Q 020203 120 KTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQ-KLGALHLDRNKLTGSIPESFGTFTGSIPDLYLS 198 (329)
Q Consensus 120 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 198 (329)
..+++..+.+. .....+..++.++.+++.+|.++ .++....... +|+.|++++|.+. .+|..+..++ .|+.|+++
T Consensus 96 ~~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~-~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLP-NLKNLDLS 171 (394)
T ss_pred ceeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccc-cccccccC
Confidence 36888888875 23334556688999999999999 7777777774 9999999999998 7777788888 99999999
Q ss_pred cCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccc
Q 020203 199 HNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIP 277 (329)
Q Consensus 199 ~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p 277 (329)
+|++. .+|...+.. .|+.|++++|.++...+. ......|+++.+++|.....+..+....++..+.+.+|++. .++
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-ecc
Confidence 99999 566655344 899999999999876543 34566799999999976556666777788999999999987 557
Q ss_pred hhhcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCCCC
Q 020203 278 AQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCL 320 (329)
Q Consensus 278 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~ 320 (329)
..++.+++++.|++++|+++. ++..+.+.+++.+++.+|...
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~-i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISS-ISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred chhccccccceeccccccccc-cccccccCccCEEeccCcccc
Confidence 888999999999999999985 444888999999999998754
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.2e-12 Score=113.15 Aligned_cols=208 Identities=24% Similarity=0.227 Sum_probs=122.6
Q ss_pred CCCCCCEEeCCCCCCCCCCC-hhhhcCCCCCCEEeccCccCCc--cCcccccCCCCCCEEEccCCcCCCCCCcc-CCCCC
Q 020203 90 DLPYLETLMFHKLPSLTGPI-QPAIAKLKNLKTLRISWTNISG--PVPDFISQLTNLTFLELSFNNLSGTIPGS-LSKLQ 165 (329)
Q Consensus 90 ~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~ 165 (329)
++.+|++..+.+ ....... -+....+++++.|||+.|-+.. .+......+|+|+.|+++.|++.-..... -..++
T Consensus 119 n~kkL~~IsLdn-~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDN-YRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecC-ccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 455677777766 2322211 1345667788888888876652 23344557788888888888775221111 12456
Q ss_pred CCCEEecccccCcccCC-hhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccch-hhhccCCCCCCEE
Q 020203 166 KLGALHLDRNKLTGSIP-ESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDA-SFLFGLNKTTQRI 242 (329)
Q Consensus 166 ~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L 242 (329)
.|+.|.++.+.++..-- .-...++ +++.|++.+|...+.......-. .|++|||++|.+.... ....+.++.|..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fP-sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFP-SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCC-cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 77788888877763322 2233444 78888888875221111111122 6788888888765443 2445667777777
Q ss_pred EccCccceee--cCC-----CCCCCCCCEEEccCCcCcc-ccchhhcCCCCCCEEEeecCcCccc
Q 020203 243 DVSRNLLEFN--LSK-----VEFPQSLTNLDLNHNKIFG-SIPAQITSLENLGFLNVSYNRLCGP 299 (329)
Q Consensus 243 ~l~~n~l~~~--~~~-----~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~ 299 (329)
+++.+.+... ++. ....++|++|++..|++.+ ..-..+..+++|+.|.+..|.++.+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 7777777642 111 2344678888888887742 1223455667777777777777654
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=6.6e-12 Score=107.28 Aligned_cols=226 Identities=21% Similarity=0.236 Sum_probs=139.8
Q ss_pred CcEEEEEeCCCCCCee----cCcCCCCCCCCCEEeCCCCCCCCCC----Chh-------hhcCCCCCCEEeccCccCCcc
Q 020203 68 NRINSLTIFAGDLPGQ----IPPEVGDLPYLETLMFHKLPSLTGP----IQP-------AIAKLKNLKTLRISWTNISGP 132 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~l~~~----~~~-------~l~~l~~L~~L~Ls~n~l~~~ 132 (329)
..++.|++++|.+... +.+.+...++|+..++++ -++|. +|+ ++...++|+++|||.|-+...
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd--~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD--MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh--hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 4689999999988543 444566777888888886 44443 343 334557888899998887743
Q ss_pred Ccc----cccCCCCCCEEEccCCcCCCCC-------------CccCCCCCCCCEEecccccCccc----CChhhhhcCCC
Q 020203 133 VPD----FISQLTNLTFLELSFNNLSGTI-------------PGSLSKLQKLGALHLDRNKLTGS----IPESFGTFTGS 191 (329)
Q Consensus 133 ~~~----~~~~l~~L~~L~l~~n~l~~~~-------------p~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~~ 191 (329)
.+. -+.++..|++|.|.+|.+...- ..-.+.-+.|+.+..++|++... +...+...+ .
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~-~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP-T 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc-c
Confidence 333 3456788888888888775211 11123446777887777776522 223344444 7
Q ss_pred CCeEEcccCcCcccc----cccccCC-ccCEEEeeCCcCccc----hhhhccCCCCCCEEEccCccceeecCC------C
Q 020203 192 IPDLYLSHNQLSGKI----PASLGSM-DFNTIDLSRNKLEGD----ASFLFGLNKTTQRIDVSRNLLEFNLSK------V 256 (329)
Q Consensus 192 L~~L~l~~n~l~~~~----p~~l~~~-~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~------~ 256 (329)
|+.+.+..|.+.... -.++... +|+.||+.+|.++.. +...++.++.|+.|++++|.+...... .
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 777777777665211 1223333 677777777777632 334556667777777777776532211 1
Q ss_pred CCCCCCCEEEccCCcCccc----cchhhcCCCCCCEEEeecCcC
Q 020203 257 EFPQSLTNLDLNHNKIFGS----IPAQITSLENLGFLNVSYNRL 296 (329)
Q Consensus 257 ~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l 296 (329)
...+.|+.|.+.+|.++.. +-..+...+.|..|+|++|.+
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2246777777777776531 223344566777777777777
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=1.1e-11 Score=104.13 Aligned_cols=130 Identities=29% Similarity=0.319 Sum_probs=68.7
Q ss_pred CCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCE
Q 020203 163 KLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQR 241 (329)
Q Consensus 163 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 241 (329)
....|+++|+++|.|+ .+.++..-.+ .++.|++++|++... ..++.+ +|+.||+++|.++.... +=.++-++++
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeee--hhhhhcccceEeecccchhHhhhh-hHhhhcCEee
Confidence 3345666666666665 5555554444 666666666666521 224444 66666666666553322 1123445556
Q ss_pred EEccCccceeecCCCCCCCCCCEEEccCCcCcc-ccchhhcCCCCCCEEEeecCcCcc
Q 020203 242 IDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFG-SIPAQITSLENLGFLNVSYNRLCG 298 (329)
Q Consensus 242 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~ 298 (329)
|.+++|.+. ....+..+-+|..||+++|+|.. .-...++++|.|+.+.+.+|.+.+
T Consensus 357 L~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 357 LKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eehhhhhHh-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 666666555 23333444455666666666542 112335556666666666666554
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.1e-11 Score=108.93 Aligned_cols=205 Identities=21% Similarity=0.186 Sum_probs=137.9
Q ss_pred cCCCCCCEEeccCccCCccCc--ccccCCCCCCEEEccCCcCCCC--CCccCCCCCCCCEEecccccCcccCChhhhhcC
Q 020203 114 AKLKNLKTLRISWTNISGPVP--DFISQLTNLTFLELSFNNLSGT--IPGSLSKLQKLGALHLDRNKLTGSIPESFGTFT 189 (329)
Q Consensus 114 ~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 189 (329)
.++.+|+++.|.++.+. ..+ .....+++++.|||+.|-+... +......+|+|+.|+++.|++............
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45788899999988876 223 3456789999999999977632 223456789999999999987643333332233
Q ss_pred CCCCeEEcccCcCccccccccc-CC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeec--CCCCCCCCCCEE
Q 020203 190 GSIPDLYLSHNQLSGKIPASLG-SM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNL--SKVEFPQSLTNL 265 (329)
Q Consensus 190 ~~L~~L~l~~n~l~~~~p~~l~-~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~L~~L 265 (329)
+.++.|.++.|+++..--..+. .. +++.|++..|.....-.....-+..|++|||++|++-... +....++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 3888999999988743222221 12 7888999998633333333445678999999999886543 446677889999
Q ss_pred EccCCcCccc-cchh-----hcCCCCCCEEEeecCcCcc--cCCCCCccCccCcccccCCCC
Q 020203 266 DLNHNKIFGS-IPAQ-----ITSLENLGFLNVSYNRLCG--PIPVGGKLQSFGYTEYFHNRC 319 (329)
Q Consensus 266 ~l~~n~l~~~-~p~~-----~~~l~~L~~L~l~~n~l~~--~~p~~~~l~~L~~l~l~~n~~ 319 (329)
+++.+.++.. .|+. ...+++|++|++..|++.. .+.....+++|+.+...+|+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 9999888742 3332 3567899999999999853 222234455666666666553
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=1.2e-11 Score=105.69 Aligned_cols=233 Identities=16% Similarity=0.138 Sum_probs=165.9
Q ss_pred CcCCCCCCCCCEEeCCCCCCCCCC----ChhhhcCCCCCCEEeccCccCC---ccCc-------ccccCCCCCCEEEccC
Q 020203 85 PPEVGDLPYLETLMFHKLPSLTGP----IQPAIAKLKNLKTLRISWTNIS---GPVP-------DFISQLTNLTFLELSF 150 (329)
Q Consensus 85 ~~~l~~l~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~l~---~~~~-------~~~~~l~~L~~L~l~~ 150 (329)
-+.+..+..++.++|++ |.+... +...+.+.++|+..++++-... ..+| +++.++++|++++||+
T Consensus 23 ~~~~~~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHhcccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 34456778899999999 776533 4456677889999999865332 2333 3456778999999999
Q ss_pred CcCCCCCCcc----CCCCCCCCEEecccccCcccC-------------ChhhhhcCCCCCeEEcccCcCccccc----cc
Q 020203 151 NNLSGTIPGS----LSKLQKLGALHLDRNKLTGSI-------------PESFGTFTGSIPDLYLSHNQLSGKIP----AS 209 (329)
Q Consensus 151 n~l~~~~p~~----l~~l~~L~~L~l~~n~l~~~~-------------~~~~~~~~~~L~~L~l~~n~l~~~~p----~~ 209 (329)
|.+....++. +..+..|++|.|.+|.+.-.- .+..+.. +.|+++..+.|++-...- ..
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~-~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASK-PKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCC-cceEEEEeeccccccccHHHHHHH
Confidence 9987555444 356789999999999886211 1122233 389999999998864322 22
Q ss_pred ccCC-ccCEEEeeCCcCccc----hhhhccCCCCCCEEEccCccceeecC-----CCCCCCCCCEEEccCCcCccccch-
Q 020203 210 LGSM-DFNTIDLSRNKLEGD----ASFLFGLNKTTQRIDVSRNLLEFNLS-----KVEFPQSLTNLDLNHNKIFGSIPA- 278 (329)
Q Consensus 210 l~~~-~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~~L~~L~l~~n~l~~~~p~- 278 (329)
|... .|+.+.++.|.+... ....+.+++.|+.||+.+|-++.... .+...++|++|++++|.+...-..
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 3333 789999999988532 34678899999999999998874321 144557899999999988753332
Q ss_pred ---hh-cCCCCCCEEEeecCcCccc----CC-CCCccCccCcccccCCCC
Q 020203 279 ---QI-TSLENLGFLNVSYNRLCGP----IP-VGGKLQSFGYTEYFHNRC 319 (329)
Q Consensus 279 ---~~-~~l~~L~~L~l~~n~l~~~----~p-~~~~l~~L~~l~l~~n~~ 319 (329)
.+ ...|+|+.+.+.+|.++.. +. .....+.|..|+|.+|+.
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 22 3478999999999999742 11 124588999999999987
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=1.4e-11 Score=103.47 Aligned_cols=123 Identities=23% Similarity=0.212 Sum_probs=54.2
Q ss_pred CCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccC
Q 020203 191 SIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNH 269 (329)
Q Consensus 191 ~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 269 (329)
.|+++++++|.++ .+.++..-+ +++.|+++.|++..... ++.+++|+.||+++|.++...-.-..+-++++|.+++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 4455555555544 233333222 45555555555443322 3444555555555554443222212233445555555
Q ss_pred CcCccccchhhcCCCCCCEEEeecCcCcc--cCCCCCccCccCcccccCCC
Q 020203 270 NKIFGSIPAQITSLENLGFLNVSYNRLCG--PIPVGGKLQSFGYTEYFHNR 318 (329)
Q Consensus 270 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~l~~L~~l~l~~n~ 318 (329)
|.+. . -..+.++-+|..||+++|++.. .+...++++.|+.+.|.+||
T Consensus 362 N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 362 NKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 5543 1 1223344445555555555432 23333455555555555554
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=3.4e-10 Score=90.44 Aligned_cols=126 Identities=25% Similarity=0.387 Sum_probs=38.2
Q ss_pred hcCCCCCCEEeccCccCCccCccccc-CCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhh-hcCC
Q 020203 113 IAKLKNLKTLRISWTNISGPVPDFIS-QLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFG-TFTG 190 (329)
Q Consensus 113 l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~ 190 (329)
+.+..++++|+|++|.|+ .+. .++ .+.+|+.|++++|.++ .+. .+..+++|++|++++|.++ .+.+.+. .++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp- 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP- 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T-
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCC-
Confidence 344556778888888877 333 244 4677888888888887 333 5667788888888888887 4544443 455
Q ss_pred CCCeEEcccCcCcccc-cccccCC-ccCEEEeeCCcCccch---hhhccCCCCCCEEEc
Q 020203 191 SIPDLYLSHNQLSGKI-PASLGSM-DFNTIDLSRNKLEGDA---SFLFGLNKTTQRIDV 244 (329)
Q Consensus 191 ~L~~L~l~~n~l~~~~-p~~l~~~-~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~l 244 (329)
+|++|++++|++.... -..+..+ +|+.|++.+|.+.... ...+..+++|+.||-
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7888888888776311 1122223 5666666666554321 133444555555543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.1e-10 Score=91.68 Aligned_cols=124 Identities=24% Similarity=0.260 Sum_probs=43.6
Q ss_pred hhhcCCCCCeEEcccCcCccccccccc-CC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCC-CCCCC
Q 020203 185 FGTFTGSIPDLYLSHNQLSGKIPASLG-SM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKV-EFPQS 261 (329)
Q Consensus 185 ~~~~~~~L~~L~l~~n~l~~~~p~~l~-~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~ 261 (329)
+.+.. ++++|+|.+|.++. + +.++ .+ +|+.|++++|.++... .+..+++|++|++++|.++...+.+ ..+++
T Consensus 15 ~~n~~-~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPV-KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred ccccc-cccccccccccccc-c-cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 33444 68888998888873 3 3454 34 7888888888887653 4666788888888888887543332 24578
Q ss_pred CCEEEccCCcCccc-cchhhcCCCCCCEEEeecCcCcccCCC-----CCccCccCcccc
Q 020203 262 LTNLDLNHNKIFGS-IPAQITSLENLGFLNVSYNRLCGPIPV-----GGKLQSFGYTEY 314 (329)
Q Consensus 262 L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~-----~~~l~~L~~l~l 314 (329)
|++|++++|+|... .-..+..+++|+.|++.+|.++.. +. ...+++|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 88888888888641 224566788888888888888753 22 145667776664
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.9e-09 Score=70.92 Aligned_cols=59 Identities=39% Similarity=0.521 Sum_probs=35.5
Q ss_pred CCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEeccccc
Q 020203 118 NLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNK 176 (329)
Q Consensus 118 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 176 (329)
+|++|++++|++....+..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666664444455666666666666666664445556666666666666664
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.81 E-value=4.5e-09 Score=103.92 Aligned_cols=128 Identities=25% Similarity=0.351 Sum_probs=82.3
Q ss_pred cEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCC--CCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEE
Q 020203 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPS--LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFL 146 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 146 (329)
.++.+.+.++.+.- ++.. ...+.|++|-+.. +. +.......|..++.|++||+++|.-.+.+|..++.+-+|++|
T Consensus 524 ~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~-n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQR-NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchhh-ccCC-CCCCccceEEEee-cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 45555555555422 1221 2233577776666 33 444444557777778888888776556777777777788888
Q ss_pred EccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCc
Q 020203 147 ELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQ 201 (329)
Q Consensus 147 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 201 (329)
+++++.++ .+|..++++..|.+|++..+.....+|.....+. +|++|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~-~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ-SLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcc-cccEEEeeccc
Confidence 88877777 7777777777777777777665545555555566 77777776654
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=4.7e-09 Score=103.83 Aligned_cols=225 Identities=19% Similarity=0.217 Sum_probs=119.5
Q ss_pred cEEEEEeCCCC--CCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEE
Q 020203 69 RINSLTIFAGD--LPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFL 146 (329)
Q Consensus 69 ~v~~l~l~~~~--l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 146 (329)
.++.+-+..+. +.......|..++.|++||+++ +.--+.+|..++++-+|++|+++++.+. .+|..+..+.+|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 45566666654 2222222356677888888877 4444557777788888888888888777 777777778888888
Q ss_pred EccCCcCCCCCCccCCCCCCCCEEecccccCc--ccCChhhhhcCCCCCeEEcccCcCcccccccccCC-c----cCEEE
Q 020203 147 ELSFNNLSGTIPGSLSKLQKLGALHLDRNKLT--GSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-D----FNTID 219 (329)
Q Consensus 147 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~----L~~L~ 219 (329)
++..+.....+|.....+++|++|.+...... ...-..+..+. .|+.+........ +-..+..+ . .+.+.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le-~L~~ls~~~~s~~--~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE-HLENLSITISSVL--LLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc-chhhheeecchhH--hHhhhhhhHHHHHHhHhhh
Confidence 88777665555666666778887777655422 11122233333 3333333222110 00111111 1 12222
Q ss_pred eeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CCC------CCCCCEEEccCCcCccccchhhcCCCCCCEEEee
Q 020203 220 LSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEF------PQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVS 292 (329)
Q Consensus 220 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~------~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 292 (329)
+.++.. ......+..+.+|+.|.+..+.+...... ... .+++..+...++... ..+.+.-..++|+.|++.
T Consensus 701 ~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 701 IEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLV 778 (889)
T ss_pred hccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEe
Confidence 222222 12334455677777777777776532111 000 112222222222211 223333456899999999
Q ss_pred cCcCcccC
Q 020203 293 YNRLCGPI 300 (329)
Q Consensus 293 ~n~l~~~~ 300 (329)
.+.....+
T Consensus 779 ~~~~~e~~ 786 (889)
T KOG4658|consen 779 SCRLLEDI 786 (889)
T ss_pred cccccccC
Confidence 88776543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=8.1e-09 Score=67.87 Aligned_cols=59 Identities=29% Similarity=0.390 Sum_probs=32.6
Q ss_pred CCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcC
Q 020203 238 TTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRL 296 (329)
Q Consensus 238 ~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 296 (329)
+|++|++++|.++...+. +..+++|++|++++|+++...|..+..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555544332 44555666666666666544445556666666666666553
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=1.1e-09 Score=100.87 Aligned_cols=220 Identities=22% Similarity=0.212 Sum_probs=101.3
Q ss_pred CCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCC
Q 020203 88 VGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKL 167 (329)
Q Consensus 88 l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 167 (329)
+..+.+++.+++.+ +.+..... .+..+++|++|++++|.|+...+ +..++.|+.|++++|.++ .+ ..+..++.|
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DI-SGLESLKSL 164 (414)
T ss_pred cccccceeeeeccc-cchhhccc-chhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hc-cCCccchhh
Confidence 44555555555555 45544311 14455556666666665553222 444455566666666554 22 233345555
Q ss_pred CEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCC--CCCEEEc
Q 020203 168 GALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNK--TTQRIDV 244 (329)
Q Consensus 168 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l 244 (329)
+.+++++|.+...-+.....+. +++.+.+.+|.+.. ...+... .+..+++..|.++...+. .... .|+.+++
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~-~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l 239 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELI-SLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGL--NELVMLHLRELYL 239 (414)
T ss_pred hcccCCcchhhhhhhhhhhhcc-chHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCc--ccchhHHHHHHhc
Confidence 6666666655522220023333 55555555555441 1111111 333334444444332211 1111 2556666
Q ss_pred cCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCccc---CCC--CCccCccCcccccCCCC
Q 020203 245 SRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGP---IPV--GGKLQSFGYTEYFHNRC 319 (329)
Q Consensus 245 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~---~p~--~~~l~~L~~l~l~~n~~ 319 (329)
++|.+......+....++..|++.+|++... ..+...+.+..+....|++... ... ......+..+++.+|+.
T Consensus 240 ~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 240 SGNRISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred ccCccccccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 6666653323334445666666666665421 1122334444555555554421 111 24455566666666654
Q ss_pred C
Q 020203 320 L 320 (329)
Q Consensus 320 ~ 320 (329)
-
T Consensus 318 ~ 318 (414)
T KOG0531|consen 318 R 318 (414)
T ss_pred c
Confidence 3
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.76 E-value=1.5e-10 Score=107.67 Aligned_cols=127 Identities=23% Similarity=0.202 Sum_probs=98.5
Q ss_pred CCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccC
Q 020203 191 SIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNH 269 (329)
Q Consensus 191 ~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 269 (329)
.|...+.++|.+. .+..++.-+ .++.|+|++|+++... .+..+++|++||++.|.+...+..-..--+|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 5778888888887 455555555 7899999999987654 67788999999999999884333222223599999999
Q ss_pred CcCccccchhhcCCCCCCEEEeecCcCcc--cCCCCCccCccCcccccCCCCCCC
Q 020203 270 NKIFGSIPAQITSLENLGFLNVSYNRLCG--PIPVGGKLQSFGYTEYFHNRCLCG 322 (329)
Q Consensus 270 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~l~~L~~l~l~~n~~~~~ 322 (329)
|.++ .+ ..+.++.+|+.||+++|-+.+ .+-..+.+.+|..|.|.|||.-|.
T Consensus 242 N~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 242 NALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 9986 33 346789999999999998886 344568889999999999998775
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=8.6e-11 Score=98.63 Aligned_cols=229 Identities=18% Similarity=0.215 Sum_probs=151.9
Q ss_pred CccceEecCCCCcEEEEEeCCCCCCeecCcCCCCCC--CCCEEeCCCCCCCCCC-Chhhhc-CCCCCCEEeccCccCC-c
Q 020203 57 DWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLP--YLETLMFHKLPSLTGP-IQPAIA-KLKNLKTLRISWTNIS-G 131 (329)
Q Consensus 57 ~~~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~--~L~~L~l~~~~~l~~~-~~~~l~-~l~~L~~L~Ls~n~l~-~ 131 (329)
.|++..-+ ....+.+|+.+.++. |..++.+. ....+.+.. ...... +.+.+. .-..|+++||++..++ .
T Consensus 127 Rfyr~~~d--e~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar-~~~~~prlae~~~~frsRlq~lDLS~s~it~s 200 (419)
T KOG2120|consen 127 RFYRLASD--ESLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLAR-SFMDQPRLAEHFSPFRSRLQHLDLSNSVITVS 200 (419)
T ss_pred HHhhcccc--ccceeeeccCCCccC---hhHHHHHHhCCeEEEEcch-hhhcCchhhhhhhhhhhhhHHhhcchhheeHH
Confidence 36655444 356788899888774 33333332 333444443 122211 111221 1246999999999888 3
Q ss_pred cCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEeccccc-Ccc-cCChhhhhcCCCCCeEEcccCcCccccc-c
Q 020203 132 PVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNK-LTG-SIPESFGTFTGSIPDLYLSHNQLSGKIP-A 208 (329)
Q Consensus 132 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~ 208 (329)
.+-..+..+.+|+.|.+.++++.+.+...++.-.+|+.++++.+. ++. ...--+.++. .|..|++++|.+..... .
T Consensus 201 tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs-~L~~LNlsWc~l~~~~Vtv 279 (419)
T KOG2120|consen 201 TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS-RLDELNLSWCFLFTEKVTV 279 (419)
T ss_pred HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh-hHhhcCchHhhccchhhhH
Confidence 444557789999999999999998888889999999999998753 331 1122345666 89999999998875432 2
Q ss_pred cccCC--ccCEEEeeCCc---CccchhhhccCCCCCCEEEccCcccee--ecCCCCCCCCCCEEEccCCcCccccchh--
Q 020203 209 SLGSM--DFNTIDLSRNK---LEGDASFLFGLNKTTQRIDVSRNLLEF--NLSKVEFPQSLTNLDLNHNKIFGSIPAQ-- 279 (329)
Q Consensus 209 ~l~~~--~L~~L~l~~n~---l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~~~p~~-- 279 (329)
.++.. +++.|++++.. ....+.....+++.|.+||+++|..-. .+..+...+.|++|.++.|.. .+|..
T Consensus 280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~ 357 (419)
T KOG2120|consen 280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLL 357 (419)
T ss_pred HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHee
Confidence 23344 78999998864 223344556789999999999875432 222244567899999999873 55654
Q ss_pred -hcCCCCCCEEEeecC
Q 020203 280 -ITSLENLGFLNVSYN 294 (329)
Q Consensus 280 -~~~l~~L~~L~l~~n 294 (329)
+...|.|++|++.++
T Consensus 358 ~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 358 ELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeccCcceEEEEeccc
Confidence 467788999988765
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.73 E-value=2.7e-09 Score=88.70 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=52.7
Q ss_pred CcEEEEEeCCCCCCee----cCcCCCCCCCCCEEeCCCCCCCCCCC-----------hhhhcCCCCCCEEeccCccCCcc
Q 020203 68 NRINSLTIFAGDLPGQ----IPPEVGDLPYLETLMFHKLPSLTGPI-----------QPAIAKLKNLKTLRISWTNISGP 132 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~l~~~~-----------~~~l~~l~~L~~L~Ls~n~l~~~ 132 (329)
..++.+++++|.+... +...+.+-.+|+..+++. .++|.. .+++.++++|+.++||.|.+...
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd--~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD--AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh--hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4578888888888543 333455667777777776 444432 23445667777777777777655
Q ss_pred Cccc----ccCCCCCCEEEccCCcCC
Q 020203 133 VPDF----ISQLTNLTFLELSFNNLS 154 (329)
Q Consensus 133 ~~~~----~~~l~~L~~L~l~~n~l~ 154 (329)
.|.. +++...|.+|.+++|.+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC
Confidence 5543 344556666666666553
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=9.6e-10 Score=101.29 Aligned_cols=197 Identities=26% Similarity=0.348 Sum_probs=136.2
Q ss_pred CCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCE
Q 020203 90 DLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGA 169 (329)
Q Consensus 90 ~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 169 (329)
.+..++.+.+.. +.+.. +-..+..+++|+.+++.+|.|. .+...+..+++|++|++++|.|+..- .+..++.|+.
T Consensus 70 ~l~~l~~l~l~~-n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQ-NLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccch-hhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhh
Confidence 455666666666 44443 2234677888999999999988 44444777899999999999987432 4667777999
Q ss_pred EecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCcc
Q 020203 170 LHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNL 248 (329)
Q Consensus 170 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 248 (329)
|++.+|.+. .+. .+..+. .|+.+++++|.+...-+...... .++.+++.+|.+..... +.....+..+++..|.
T Consensus 145 L~l~~N~i~-~~~-~~~~l~-~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLIS-DIS-GLESLK-SLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcch-hcc-CCccch-hhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhccccc
Confidence 999999987 332 344466 88899999998884333102333 78888888888765432 2233444555777787
Q ss_pred ceeecCCCCCCC--CCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcc
Q 020203 249 LEFNLSKVEFPQ--SLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCG 298 (329)
Q Consensus 249 l~~~~~~~~~~~--~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 298 (329)
++..- .+.... +|+.+++++|.+. .++..+..+..+..+++.+|++..
T Consensus 220 i~~~~-~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 220 ISKLE-GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred ceecc-CcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence 77332 222223 3899999999987 454667788889999999998875
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=7.6e-09 Score=87.10 Aligned_cols=226 Identities=23% Similarity=0.207 Sum_probs=142.1
Q ss_pred CcCCCCCCCCCEEeCCCCCCCCCC-Chhhh-cCCCCCCEEeccCccCC--ccCcccccCCCCCCEEEccCCcCCCCCCcc
Q 020203 85 PPEVGDLPYLETLMFHKLPSLTGP-IQPAI-AKLKNLKTLRISWTNIS--GPVPDFISQLTNLTFLELSFNNLSGTIPGS 160 (329)
Q Consensus 85 ~~~l~~l~~L~~L~l~~~~~l~~~-~~~~l-~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 160 (329)
+-.+.....++.+.+.++ .+... .-..| ...+.++.+||.+|.|+ ..+...+.++|.|+.|+++.|++...+ +.
T Consensus 38 ~~~v~s~ra~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~ 115 (418)
T KOG2982|consen 38 YLGVSSLRALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KS 115 (418)
T ss_pred eeeeccccchhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-cc
Confidence 333444445555555552 33221 11233 34688999999999988 345555678999999999999988443 33
Q ss_pred C-CCCCCCCEEecccccCcccCChhh-hhcCCCCCeEEcccCcCcccc--cccccCC--ccCEEEeeCCcCcc--chhhh
Q 020203 161 L-SKLQKLGALHLDRNKLTGSIPESF-GTFTGSIPDLYLSHNQLSGKI--PASLGSM--DFNTIDLSRNKLEG--DASFL 232 (329)
Q Consensus 161 l-~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~--p~~l~~~--~L~~L~l~~n~l~~--~~~~~ 232 (329)
+ ....+|+.|.|.+..+...-..++ ..++ .+++|.++.|.+.... ....... .+++++..+|...- .....
T Consensus 116 lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP-~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l 194 (418)
T KOG2982|consen 116 LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP-KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL 194 (418)
T ss_pred CcccccceEEEEEcCCCCChhhhhhhhhcch-hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH
Confidence 3 467799999999988875544433 3444 8889999988554211 1112222 45666655554321 01112
Q ss_pred ccCCCCCCEEEccCccceeecCC--CCCCCCCCEEEccCCcCccc-cchhhcCCCCCCEEEeecCcCcccCCCC------
Q 020203 233 FGLNKTTQRIDVSRNLLEFNLSK--VEFPQSLTNLDLNHNKIFGS-IPAQITSLENLGFLNVSYNRLCGPIPVG------ 303 (329)
Q Consensus 233 ~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~------ 303 (329)
-..++++..+.+..|.+...-.. ....+.+..|+++.|+|... .-..+.+++.|..|.+++|.+...+-..
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ll 274 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLL 274 (418)
T ss_pred HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEE
Confidence 23467788888888877644332 33345677889999988642 3456788999999999999887655432
Q ss_pred -CccCccCccc
Q 020203 304 -GKLQSFGYTE 313 (329)
Q Consensus 304 -~~l~~L~~l~ 313 (329)
+++++++.|+
T Consensus 275 IaRL~~v~vLN 285 (418)
T KOG2982|consen 275 IARLTKVQVLN 285 (418)
T ss_pred EeeccceEEec
Confidence 4555555543
No 47
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.67 E-value=3.5e-08 Score=59.60 Aligned_cols=39 Identities=62% Similarity=1.112 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHhCCC-C-CCCCCCCCC--CCCcCccceEec
Q 020203 26 NPNDKKVLLKFKKSLNN-P-YVLASWNPK--TDCCDWYCVTCD 64 (329)
Q Consensus 26 ~~~~~~~l~~~~~~~~~-~-~~~~~w~~~--~~~c~~~gv~c~ 64 (329)
+++|++||++||.++.+ + ..+.+|... .++|.|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 36799999999999984 5 488999987 799999999995
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=1.1e-09 Score=102.11 Aligned_cols=127 Identities=28% Similarity=0.293 Sum_probs=97.6
Q ss_pred CCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccc-cccCCccCEE
Q 020203 140 LTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPA-SLGSMDFNTI 218 (329)
Q Consensus 140 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~l~~~~L~~L 218 (329)
+-+|...+.++|++. .+..++.-++.++.|+|++|+++.. +.+..+. .|++|++++|.++ .+|. ...+.+|+.|
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~-~LkhLDlsyN~L~-~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLP-KLKHLDLSYNCLR-HVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcc-cccccccccchhc-cccccchhhhhheee
Confidence 346788888999887 6667777889999999999999833 3777777 9999999999998 4442 2222379999
Q ss_pred EeeCCcCccchhhhccCCCCCCEEEccCccceee--cCCCCCCCCCCEEEccCCcCc
Q 020203 219 DLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFN--LSKVEFPQSLTNLDLNHNKIF 273 (329)
Q Consensus 219 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~L~~L~l~~n~l~ 273 (329)
.+.+|.++... .+.++++|..||+++|-+.+. ...++.+..|+.|.|.+|.+.
T Consensus 238 ~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99999887543 356788899999999988763 333556678899999999875
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=1.3e-07 Score=79.83 Aligned_cols=204 Identities=19% Similarity=0.155 Sum_probs=133.1
Q ss_pred CCCCCEEeccCccCC--ccCcccccCCCCCCEEEccCCcCCC--CCCccCCCCCCCCEEecccccCcccCChhhhhcCCC
Q 020203 116 LKNLKTLRISWTNIS--GPVPDFISQLTNLTFLELSFNNLSG--TIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGS 191 (329)
Q Consensus 116 l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 191 (329)
+..++.+-+.++.|. |.....-..++.++.+||.+|.+++ .+...+.++|.|+.|+++.|++...+...-.... +
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~-n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK-N 122 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc-c
Confidence 344555666666655 2222222356889999999999984 2334467899999999999998744432212334 8
Q ss_pred CCeEEcccCcCcccccccc-cCC-ccCEEEeeCCcCccch---hhhccCCCCCCEEEccCccceeecCC---CCCCCCCC
Q 020203 192 IPDLYLSHNQLSGKIPASL-GSM-DFNTIDLSRNKLEGDA---SFLFGLNKTTQRIDVSRNLLEFNLSK---VEFPQSLT 263 (329)
Q Consensus 192 L~~L~l~~n~l~~~~p~~l-~~~-~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~L~ 263 (329)
|+.|.|.+..+.-.-..++ ..+ .++.|+++.|.+.... ...-...+.+.+++.-.|...-.... .+..+++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 9999999988765433333 333 7888999998654321 11111234667777777655422211 23457889
Q ss_pred EEEccCCcCccc-cchhhcCCCCCCEEEeecCcCcc--cCCCCCccCccCcccccCCCCC
Q 020203 264 NLDLNHNKIFGS-IPAQITSLENLGFLNVSYNRLCG--PIPVGGKLQSFGYTEYFHNRCL 320 (329)
Q Consensus 264 ~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~l~~L~~l~l~~n~~~ 320 (329)
.+.+..|.+... .-+....+|.+.-|+|+.|++.. .+.....+++|..+.+.+||..
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 999999977532 23345667788889999999875 4556688899999999998853
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.9e-06 Score=51.32 Aligned_cols=38 Identities=37% Similarity=0.630 Sum_probs=30.8
Q ss_pred CCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcc
Q 020203 260 QSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCG 298 (329)
Q Consensus 260 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 298 (329)
++|++|++++|+|+ .+|..++++++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 36899999999998 677778899999999999998874
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=8.5e-08 Score=80.96 Aligned_cols=228 Identities=18% Similarity=0.163 Sum_probs=146.7
Q ss_pred CcEEEEEeCCCCCCee-cCcCCCCC-CCCCEEeCCCCCCCCCC-ChhhhcCCCCCCEEeccCccCCccCcccccCCCCCC
Q 020203 68 NRINSLTIFAGDLPGQ-IPPEVGDL-PYLETLMFHKLPSLTGP-IQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLT 144 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~-~~~~l~~l-~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 144 (329)
+.|..+.+........ +.+.+.-+ ..|+.|||+. ..++.. ...-+..+.+|+.|.+.++++.+.+...+.+-..|+
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~ 237 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLV 237 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccce
Confidence 4566666654333222 22323323 3589999998 566543 223456789999999999999998888899999999
Q ss_pred EEEccCCc-CCCC-CCccCCCCCCCCEEecccccCcccC-ChhhhhcCCCCCeEEcccCcCcc--cccccccC-C-ccCE
Q 020203 145 FLELSFNN-LSGT-IPGSLSKLQKLGALHLDRNKLTGSI-PESFGTFTGSIPDLYLSHNQLSG--KIPASLGS-M-DFNT 217 (329)
Q Consensus 145 ~L~l~~n~-l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~l~~n~l~~--~~p~~l~~-~-~L~~ 217 (329)
.++++.+. ++.. ..--+.+++.|+.|+++.+.+.... -..+.+....++.|+++++.-.- ..-+.+.. . .+..
T Consensus 238 ~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 238 RLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH 317 (419)
T ss_pred eeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence 99999874 3311 1112568899999999999875332 22334444588999999875431 11112222 2 7999
Q ss_pred EEeeCCc-CccchhhhccCCCCCCEEEccCcccee--ecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecC
Q 020203 218 IDLSRNK-LEGDASFLFGLNKTTQRIDVSRNLLEF--NLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYN 294 (329)
Q Consensus 218 L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 294 (329)
||++++. ++...-..|.+++.|++|.++.|..-. ..-.+...+.|.+|++.++--.+..--....+++|+.-....|
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin~q~~~ 397 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKINCQHFN 397 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccccceeee
Confidence 9999976 444445667789999999999986431 1111455688999998877533222223346677765444444
Q ss_pred cC
Q 020203 295 RL 296 (329)
Q Consensus 295 ~l 296 (329)
.+
T Consensus 398 ~i 399 (419)
T KOG2120|consen 398 FI 399 (419)
T ss_pred ee
Confidence 33
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=5e-06 Score=50.26 Aligned_cols=36 Identities=42% Similarity=0.519 Sum_probs=15.0
Q ss_pred CCCEEeccCccCCccCcccccCCCCCCEEEccCCcCC
Q 020203 118 NLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLS 154 (329)
Q Consensus 118 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 154 (329)
+|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 33333444444444444444443
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=2.6e-05 Score=70.25 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=40.2
Q ss_pred CCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCC-cCCCCCCccCCCCCC
Q 020203 88 VGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFN-NLSGTIPGSLSKLQK 166 (329)
Q Consensus 88 l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~ 166 (329)
+..+.+++.|++++| .++. +| . -..+|+.|.++++.--..+|..+ .++|+.|++++| .+. .+|. +
T Consensus 48 ~~~~~~l~~L~Is~c-~L~s-LP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIES-LP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcc-cC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------c
Confidence 344567777777773 4443 23 1 12357777777643222455433 246777777776 333 3443 3
Q ss_pred CCEEeccccc
Q 020203 167 LGALHLDRNK 176 (329)
Q Consensus 167 L~~L~l~~n~ 176 (329)
|+.|++..+.
T Consensus 114 Le~L~L~~n~ 123 (426)
T PRK15386 114 VRSLEIKGSA 123 (426)
T ss_pred cceEEeCCCC
Confidence 5555555444
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.98 E-value=3.4e-06 Score=70.57 Aligned_cols=230 Identities=18% Similarity=0.148 Sum_probs=158.6
Q ss_pred CCCCCCCCCEEeCCCCCCCCCC----ChhhhcCCCCCCEEeccCccCC---ccC-------cccccCCCCCCEEEccCCc
Q 020203 87 EVGDLPYLETLMFHKLPSLTGP----IQPAIAKLKNLKTLRISWTNIS---GPV-------PDFISQLTNLTFLELSFNN 152 (329)
Q Consensus 87 ~l~~l~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~l~---~~~-------~~~~~~l~~L~~L~l~~n~ 152 (329)
.+..+..++.+++++ |.+... +...+.+-.+|+..+++.-... ..+ -+++-+||+|+..+||.|.
T Consensus 25 el~~~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 345577899999999 777654 3334566688888888865433 112 2346789999999999999
Q ss_pred CCCCCCcc----CCCCCCCCEEecccccCcc----cCChhhh---------hcCCCCCeEEcccCcCcccccccc-----
Q 020203 153 LSGTIPGS----LSKLQKLGALHLDRNKLTG----SIPESFG---------TFTGSIPDLYLSHNQLSGKIPASL----- 210 (329)
Q Consensus 153 l~~~~p~~----l~~l~~L~~L~l~~n~l~~----~~~~~~~---------~~~~~L~~L~l~~n~l~~~~p~~l----- 210 (329)
|....|+. ++....|.+|.+++|.+.- .+..++. +- +.|+....+.|++- ..+...
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k-p~Le~vicgrNRle-ngs~~~~a~~l 181 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK-PKLEVVICGRNRLE-NGSKELSAALL 181 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC-CCceEEEeccchhc-cCcHHHHHHHH
Confidence 98766654 4667899999999998752 2222222 22 38999999999986 333222
Q ss_pred cCC-ccCEEEeeCCcCccc--h---hhhccCCCCCCEEEccCccceeecCC-----CCCCCCCCEEEccCCcCccccchh
Q 020203 211 GSM-DFNTIDLSRNKLEGD--A---SFLFGLNKTTQRIDVSRNLLEFNLSK-----VEFPQSLTNLDLNHNKIFGSIPAQ 279 (329)
Q Consensus 211 ~~~-~L~~L~l~~n~l~~~--~---~~~~~~~~~L~~L~l~~n~l~~~~~~-----~~~~~~L~~L~l~~n~l~~~~p~~ 279 (329)
... .|+++.+..|.+... . -..+..+.+|+.||+..|-++-.... +...+.|++|.+.+|-++..-..+
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHH
Confidence 112 689999999988643 1 22345678999999999988743221 223356899999999876433322
Q ss_pred ----h--cCCCCCCEEEeecCcCcccC------CCC--CccCccCcccccCCCC
Q 020203 280 ----I--TSLENLGFLNVSYNRLCGPI------PVG--GKLQSFGYTEYFHNRC 319 (329)
Q Consensus 280 ----~--~~l~~L~~L~l~~n~l~~~~------p~~--~~l~~L~~l~l~~n~~ 319 (329)
+ ...|+|..|.+.+|...+.+ |.. ..++.|..+.+.||+.
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 2 24688999999999887632 222 5677888888888875
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.94 E-value=2.6e-07 Score=69.29 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=33.8
Q ss_pred ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeec
Q 020203 214 DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSY 293 (329)
Q Consensus 214 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 293 (329)
.|+..++++|.+...++..-..++.++++++++|.+...+..+..++.|+.|+++.|.+. ..|..+..+.++..|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence 334444444444443333333333444444444444433333333344444444444443 3333333344444444444
Q ss_pred CcC
Q 020203 294 NRL 296 (329)
Q Consensus 294 n~l 296 (329)
|.+
T Consensus 133 na~ 135 (177)
T KOG4579|consen 133 NAR 135 (177)
T ss_pred Ccc
Confidence 433
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=6.4e-07 Score=67.23 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCCCEEeccCccCCccCccccc-CCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeE
Q 020203 117 KNLKTLRISWTNISGPVPDFIS-QLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDL 195 (329)
Q Consensus 117 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 195 (329)
..|+.++|++|.+. .+|..|. ..+.++.+++++|+++ .+|..+..++.|+.|+++.|.+. ..|.-+..+. ++..|
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~-~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLI-KLDML 128 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHH-hHHHh
Confidence 33344444444444 3333332 2234444444444444 33444444444444444444443 3333333333 44444
Q ss_pred EcccCcC
Q 020203 196 YLSHNQL 202 (329)
Q Consensus 196 ~l~~n~l 202 (329)
+..+|.+
T Consensus 129 ds~~na~ 135 (177)
T KOG4579|consen 129 DSPENAR 135 (177)
T ss_pred cCCCCcc
Confidence 4444443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.84 E-value=3e-05 Score=62.23 Aligned_cols=102 Identities=17% Similarity=0.249 Sum_probs=56.2
Q ss_pred CCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC--ccCEEEeeCCcCccch-hhhccCCCCCCE
Q 020203 165 QKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM--DFNTIDLSRNKLEGDA-SFLFGLNKTTQR 241 (329)
Q Consensus 165 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~--~L~~L~l~~n~l~~~~-~~~~~~~~~L~~ 241 (329)
.....+|+++|.+. .+ ..+..+. .|.+|.+++|+++.. .+.+... .|+.|.+.+|.+.... -..+..+++|++
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~-rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLP-RLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchh-hc-ccCCCcc-ccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 34566777777664 22 2344455 677777777777633 3334333 4677777777665432 123445666666
Q ss_pred EEccCccceeecCC----CCCCCCCCEEEccCC
Q 020203 242 IDVSRNLLEFNLSK----VEFPQSLTNLDLNHN 270 (329)
Q Consensus 242 L~l~~n~l~~~~~~----~~~~~~L~~L~l~~n 270 (329)
|.+-+|.++..... +..+++|+.||...=
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 66666666532221 234456666665543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=7.1e-05 Score=60.13 Aligned_cols=122 Identities=20% Similarity=0.135 Sum_probs=85.2
Q ss_pred CCCeEEcccCcCcccccccccCC--ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCC-CCCCCCCEEEc
Q 020203 191 SIPDLYLSHNQLSGKIPASLGSM--DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKV-EFPQSLTNLDL 267 (329)
Q Consensus 191 ~L~~L~l~~n~l~~~~p~~l~~~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L~l 267 (329)
.=+++++.+.++.. -+.++.. ....+|+++|.+... ..|.+++.|++|.+.+|.|+..-|.+ ...++|+.|.+
T Consensus 20 ~e~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 20 RERELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccccc--hhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence 34567777766542 1223333 678899999988643 45678889999999999999777764 44578999999
Q ss_pred cCCcCccc-cchhhcCCCCCCEEEeecCcCcccCCC----CCccCccCcccccC
Q 020203 268 NHNKIFGS-IPAQITSLENLGFLNVSYNRLCGPIPV----GGKLQSFGYTEYFH 316 (329)
Q Consensus 268 ~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~----~~~l~~L~~l~l~~ 316 (329)
.+|.|... --.-+..+|+|++|.+-+|..+..--- ...+++|+.||..+
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99987621 112346788999999999988753221 25678888888654
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00042 Score=62.61 Aligned_cols=137 Identities=18% Similarity=0.302 Sum_probs=85.8
Q ss_pred hhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccc-cCcccCChhhhhcCC
Q 020203 112 AIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRN-KLTGSIPESFGTFTG 190 (329)
Q Consensus 112 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~ 190 (329)
.+..+.+++.|++++|.+. .+|. + -++|+.|.++++.--..+|+.+. ++|+.|++++| .+. .+|.
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------- 112 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------- 112 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc-------
Confidence 3556788999999999888 6662 2 24699999988543336665542 58999999988 443 4443
Q ss_pred CCCeEEcccCcCc--ccccccccCCccCEEEeeCCcCc--cchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEE
Q 020203 191 SIPDLYLSHNQLS--GKIPASLGSMDFNTIDLSRNKLE--GDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLD 266 (329)
Q Consensus 191 ~L~~L~l~~n~l~--~~~p~~l~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 266 (329)
+|+.|++..+... +.+|. +|+.|.+.+++.. ...+.. -.++|++|++++|.....++ ..+.+|++|+
T Consensus 113 sLe~L~L~~n~~~~L~~LPs-----sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~--~LP~SLk~L~ 183 (426)
T PRK15386 113 SVRSLEIKGSATDSIKNVPN-----GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPE--KLPESLQSIT 183 (426)
T ss_pred ccceEEeCCCCCcccccCcc-----hHhheeccccccccccccccc--cCCcccEEEecCCCcccCcc--cccccCcEEE
Confidence 6788888766543 12333 5666666443211 011111 12578888888877653222 2346888888
Q ss_pred ccCCc
Q 020203 267 LNHNK 271 (329)
Q Consensus 267 l~~n~ 271 (329)
++.+.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 87763
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.45 E-value=9e-05 Score=61.87 Aligned_cols=81 Identities=21% Similarity=0.204 Sum_probs=49.5
Q ss_pred ccCEEEeeCCcCccchhhhccCCCCCCEEEccCc--cceeecCC-CCCCCCCCEEEccCCcCccccchh---hcCCCCCC
Q 020203 214 DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRN--LLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQ---ITSLENLG 287 (329)
Q Consensus 214 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~---~~~l~~L~ 287 (329)
.++.+.+.+..++.. ..+..+++|+.|.++.| ++.+.++. ....++|+++++++|++.. +.. +..+.+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence 555666666555433 33455677788888887 55544433 3344778888888887752 222 34556677
Q ss_pred EEEeecCcCcc
Q 020203 288 FLNVSYNRLCG 298 (329)
Q Consensus 288 ~L~l~~n~l~~ 298 (329)
.|++.+|.-+.
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 77777776554
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=5.6e-05 Score=73.50 Aligned_cols=108 Identities=14% Similarity=0.189 Sum_probs=45.6
Q ss_pred CCCCCEEEccCCcCCC-CCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcc-cccccccCC-ccC
Q 020203 140 LTNLTFLELSFNNLSG-TIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSG-KIPASLGSM-DFN 216 (329)
Q Consensus 140 l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~l~~~-~L~ 216 (329)
+|.|+.|.+++-.+.. .+-....++|+|..||+++..++ .+ ..+..+. +|+.|.+.+=.+.. ..-..+..+ +|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~Lk-nLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLK-NLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccc-cHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 4555555555544421 11122234455555555555554 22 3444444 55555554433321 000112223 555
Q ss_pred EEEeeCCcCccch---h---hhccCCCCCCEEEccCccce
Q 020203 217 TIDLSRNKLEGDA---S---FLFGLNKTTQRIDVSRNLLE 250 (329)
Q Consensus 217 ~L~l~~n~l~~~~---~---~~~~~~~~L~~L~l~~n~l~ 250 (329)
.||+|+....... . +-...++.|+.||.+++.+.
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 5555554433221 0 11122455566666555544
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=7.8e-05 Score=72.52 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=87.4
Q ss_pred CCCCEEEccCCcCCC-CCCccCC-CCCCCCEEecccccCccc-CChhhhhcCCCCCeEEcccCcCcccccccccCC-ccC
Q 020203 141 TNLTFLELSFNNLSG-TIPGSLS-KLQKLGALHLDRNKLTGS-IPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFN 216 (329)
Q Consensus 141 ~~L~~L~l~~n~l~~-~~p~~l~-~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~ 216 (329)
.+|++|++++...-. .-|..++ -+|+|+.|.+.+-.+... +..-..+++ +|..||+++++++.. ..++.+ +|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFp-NL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFP-NLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccC-ccceeecCCCCccCc--HHHhccccHH
Confidence 578888887754321 1122222 468888888887665422 223334455 888888888887732 445555 677
Q ss_pred EEEeeCCcCcc-chhhhccCCCCCCEEEccCccceeec-------CCCCCCCCCCEEEccCCcCccccchhh-cCCCCCC
Q 020203 217 TIDLSRNKLEG-DASFLFGLNKTTQRIDVSRNLLEFNL-------SKVEFPQSLTNLDLNHNKIFGSIPAQI-TSLENLG 287 (329)
Q Consensus 217 ~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~-------~~~~~~~~L~~L~l~~n~l~~~~p~~~-~~l~~L~ 287 (329)
.|.+.+=.+.. ..-..+..+++|+.||+|........ ..-..+++|+.||.+++.+.+.+-+.+ ...++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 77776655543 22234456788888888876543221 112345678888888777765544333 3455666
Q ss_pred EEEee
Q 020203 288 FLNVS 292 (329)
Q Consensus 288 ~L~l~ 292 (329)
.+.+-
T Consensus 279 ~i~~~ 283 (699)
T KOG3665|consen 279 QIAAL 283 (699)
T ss_pred hhhhh
Confidence 55443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.13 E-value=0.0021 Score=48.71 Aligned_cols=120 Identities=14% Similarity=0.196 Sum_probs=37.8
Q ss_pred hcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCC
Q 020203 113 IAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSI 192 (329)
Q Consensus 113 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L 192 (329)
|.++++|+.+.+.. .+...-...|..+++|+.+.+..+ +.......|..+++++.+.+.+ .+...-...+.... ++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~-~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT-NL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T-TE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc-cc
Confidence 34444455555443 233222333444445555555443 3322223344444555555543 22212222333344 55
Q ss_pred CeEEcccCcCcccccccccCCccCEEEeeCCcCccchhhhccCCCC
Q 020203 193 PDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKT 238 (329)
Q Consensus 193 ~~L~l~~n~l~~~~p~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 238 (329)
+.+.+..+ +.......|....++.+.+.. .+.......|.++++
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNCNLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT-T--EEE-TT-B-SS----GGG----
T ss_pred cccccCcc-ccEEchhhhcCCCceEEEECC-CccEECCcccccccc
Confidence 55555443 322223333333555555443 333333344444433
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00025 Score=59.23 Aligned_cols=64 Identities=31% Similarity=0.393 Sum_probs=32.5
Q ss_pred hcCCCCCCEEeccCc--cCCccCcccccCCCCCCEEEccCCcCCCCCCccC---CCCCCCCEEecccccCc
Q 020203 113 IAKLKNLKTLRISWT--NISGPVPDFISQLTNLTFLELSFNNLSGTIPGSL---SKLQKLGALHLDRNKLT 178 (329)
Q Consensus 113 l~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~l~~n~l~ 178 (329)
+..+++|++|.++.| .+.+.++.-...+|+|++++++.|++.. +..+ ..+.+|..|++.+|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 445556666666666 3443333333444666666666666542 2222 23344555555555544
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.00016 Score=61.05 Aligned_cols=84 Identities=18% Similarity=0.142 Sum_probs=48.4
Q ss_pred ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccc--hhhcCCCCCCEEEe
Q 020203 214 DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIP--AQITSLENLGFLNV 291 (329)
Q Consensus 214 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~l 291 (329)
+.+.|+..+++++.+ ....+++.|++|.|+-|.|+.. ..+...++|++|+|..|.|. .+. .-+.++|+|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhh
Confidence 345556666665533 2334566666677766666633 22445566677777777665 222 23456666777777
Q ss_pred ecCcCcccCC
Q 020203 292 SYNRLCGPIP 301 (329)
Q Consensus 292 ~~n~l~~~~p 301 (329)
..|.-.|.-+
T Consensus 96 ~ENPCc~~ag 105 (388)
T KOG2123|consen 96 DENPCCGEAG 105 (388)
T ss_pred ccCCcccccc
Confidence 7766665544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00014 Score=61.34 Aligned_cols=99 Identities=24% Similarity=0.282 Sum_probs=63.3
Q ss_pred CCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCC--ccCCCCCCCC
Q 020203 91 LPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIP--GSLSKLQKLG 168 (329)
Q Consensus 91 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~ 168 (329)
+.+.+.|++.+ ..+..+ .-..+|+.|++|.|+-|+|+..-| +..|++|++|.|..|.|. .+. ..+.++++|+
T Consensus 18 l~~vkKLNcwg-~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWG-CGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccC-CCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 44566677777 455543 223567888888888888874333 677788888888888776 222 2356778888
Q ss_pred EEecccccCcccCChh-----hhhcCCCCCeEE
Q 020203 169 ALHLDRNKLTGSIPES-----FGTFTGSIPDLY 196 (329)
Q Consensus 169 ~L~l~~n~l~~~~~~~-----~~~~~~~L~~L~ 196 (329)
.|+|..|.-.|.-+.. +..++ +|+.|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LP-nLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLP-NLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcc-cchhcc
Confidence 8888888766554432 23333 566554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.42 E-value=0.022 Score=42.96 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=6.7
Q ss_pred hhccCCCCCCEEEccC
Q 020203 231 FLFGLNKTTQRIDVSR 246 (329)
Q Consensus 231 ~~~~~~~~L~~L~l~~ 246 (329)
..|..+++++.+++..
T Consensus 75 ~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTTTT-TTECEEEETT
T ss_pred ccccccccccccccCc
Confidence 3344444444444443
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.01 E-value=0.0034 Score=31.56 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=12.6
Q ss_pred CCCEEEccCCcCccccchhhc
Q 020203 261 SLTNLDLNHNKIFGSIPAQIT 281 (329)
Q Consensus 261 ~L~~L~l~~n~l~~~~p~~~~ 281 (329)
+|++||+++|+++ .+|..++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566777777666 5665544
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.45 E-value=0.0054 Score=30.79 Aligned_cols=6 Identities=33% Similarity=0.290 Sum_probs=2.2
Q ss_pred EeccCc
Q 020203 122 LRISWT 127 (329)
Q Consensus 122 L~Ls~n 127 (329)
||+++|
T Consensus 5 Ldls~n 10 (22)
T PF00560_consen 5 LDLSGN 10 (22)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 333333
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.81 E-value=0.0037 Score=55.87 Aligned_cols=226 Identities=19% Similarity=0.136 Sum_probs=126.0
Q ss_pred CCCCCCEEeCCCCCCCCCCChhhh-cCCCCCCEEeccCcc-CCc-cCcccccCCCCCCEEEccCCc--------------
Q 020203 90 DLPYLETLMFHKLPSLTGPIQPAI-AKLKNLKTLRISWTN-ISG-PVPDFISQLTNLTFLELSFNN-------------- 152 (329)
Q Consensus 90 ~l~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~l~~n~-------------- 152 (329)
.++.++.+++..|..++......+ ..+++|++++++++. +.+ -+.....++..++.+.+.+|.
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 678899999988777776554433 458899999999884 333 111223344445544444331
Q ss_pred -------------CCCCC-CccCCCCCCCCEEeccccc-CcccCChhhhhcCCCCCeEEcccCcC-cccccccccCC--c
Q 020203 153 -------------LSGTI-PGSLSKLQKLGALHLDRNK-LTGSIPESFGTFTGSIPDLYLSHNQL-SGKIPASLGSM--D 214 (329)
Q Consensus 153 -------------l~~~~-p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~p~~l~~~--~ 214 (329)
+++.- ...-..+..||.++.++.. ++...-.+++.-..+|+.+.+..++- +...-..++.- .
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 11100 0001124456666665543 22222234444444777777777652 22111122222 6
Q ss_pred cCEEEeeCCcCcc--chhhhccCCCCCCEEEccCccc-eee-----cCCCCCCCCCCEEEccCCcC-ccccchhhcCCCC
Q 020203 215 FNTIDLSRNKLEG--DASFLFGLNKTTQRIDVSRNLL-EFN-----LSKVEFPQSLTNLDLNHNKI-FGSIPAQITSLEN 285 (329)
Q Consensus 215 L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l-~~~-----~~~~~~~~~L~~L~l~~n~l-~~~~p~~~~~l~~ 285 (329)
|+.+++.+..... .+...-.+++.|+.+.++.+.. +.. -........++.+.++++.. +...-+.+..+++
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 7777777766432 2333345678888888887644 322 11123456788888888864 3344556678889
Q ss_pred CCEEEeecCcCcccCCC---CCccCccCccccc
Q 020203 286 LGFLNVSYNRLCGPIPV---GGKLQSFGYTEYF 315 (329)
Q Consensus 286 L~~L~l~~n~l~~~~p~---~~~l~~L~~l~l~ 315 (329)
|+.+++.+++-...-+. ..++++.+..-+.
T Consensus 428 Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred cceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 99999988865433222 2566666654444
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.74 E-value=0.001 Score=59.22 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=57.7
Q ss_pred cEEEEEeCCCCCCeecC--cCCCCCCCCCEEeCCCCCCCCCCChhhhc-CCCCCCEEeccCc-cCCccCcc-cccCCCCC
Q 020203 69 RINSLTIFAGDLPGQIP--PEVGDLPYLETLMFHKLPSLTGPIQPAIA-KLKNLKTLRISWT-NISGPVPD-FISQLTNL 143 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L 143 (329)
+.+++++.+..-.+.-+ .....+++++.|.+.+|..++...-.+++ .++.|+++++..| .++...-. ...++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 44555555543322211 12236777888888777666665444443 4678888888874 44432222 23467888
Q ss_pred CEEEccCCc-CCCC-CCccCCCCCCCCEEeccc
Q 020203 144 TFLELSFNN-LSGT-IPGSLSKLQKLGALHLDR 174 (329)
Q Consensus 144 ~~L~l~~n~-l~~~-~p~~l~~l~~L~~L~l~~ 174 (329)
++++++++. +++. +-....+.+.++.+.+.+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG 251 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKG 251 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence 888888874 3321 111233444455554443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.14 E-value=0.038 Score=25.72 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=5.2
Q ss_pred CCCEEEccCCcCc
Q 020203 261 SLTNLDLNHNKIF 273 (329)
Q Consensus 261 ~L~~L~l~~n~l~ 273 (329)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.32 E-value=0.00075 Score=62.95 Aligned_cols=65 Identities=26% Similarity=0.271 Sum_probs=30.0
Q ss_pred hcCCCCCCEEeccCccCCcc----CcccccCC-CCCCEEEccCCcCCCC----CCccCCCCCCCCEEecccccC
Q 020203 113 IAKLKNLKTLRISWTNISGP----VPDFISQL-TNLTFLELSFNNLSGT----IPGSLSKLQKLGALHLDRNKL 177 (329)
Q Consensus 113 l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l 177 (329)
+....+|+.|++++|.+.+. +...+... ..+++|++..|.+++. +...+.....++.++++.|.+
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 34455666666666665521 11112222 3445555555555432 222333444555555555554
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.36 E-value=0.0044 Score=51.23 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=35.2
Q ss_pred ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeec
Q 020203 214 DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSY 293 (329)
Q Consensus 214 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 293 (329)
..+.||++.|++-. ....|+.+..+..++++.|.+...+..+.....+..+++..|..+ ..|.+++..++++++++-.
T Consensus 43 r~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 34445555544321 112223333444445554444433333333334444444444443 4444555555555555544
Q ss_pred CcC
Q 020203 294 NRL 296 (329)
Q Consensus 294 n~l 296 (329)
|.+
T Consensus 121 ~~~ 123 (326)
T KOG0473|consen 121 TEF 123 (326)
T ss_pred Ccc
Confidence 443
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.31 E-value=0.025 Score=45.85 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=25.8
Q ss_pred cEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcC-CCCCCEEeccCc
Q 020203 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAK-LKNLKTLRISWT 127 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~Ls~n 127 (329)
.|+.+|-++..+...--+.+.+++.++.|.+.+|..+..---+.+++ .++|+.|++++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCC
Confidence 35555555555443333334455555555555544333221111221 244555555544
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.14 E-value=0.033 Score=52.24 Aligned_cols=171 Identities=22% Similarity=0.109 Sum_probs=77.6
Q ss_pred CCCCCEEeccCccCCcc--CcccccCCCCCCEEEccCC-cCCCCCC----ccCCCCCCCCEEeccccc-CcccCChhhhh
Q 020203 116 LKNLKTLRISWTNISGP--VPDFISQLTNLTFLELSFN-NLSGTIP----GSLSKLQKLGALHLDRNK-LTGSIPESFGT 187 (329)
Q Consensus 116 l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~p----~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~ 187 (329)
.+.|+.+.+..+.-... .-.....+++|+.|+++.+ ......+ .....+++|+.+++++.. ++...-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566666655532211 2233445666666666652 1110111 122334566666666665 44333333333
Q ss_pred cCCCCCeEEcccCc-CcccccccccCC--ccCEEEeeCCcCccc--hhhhccCCCCCCEEEccCcc----cee-------
Q 020203 188 FTGSIPDLYLSHNQ-LSGKIPASLGSM--DFNTIDLSRNKLEGD--ASFLFGLNKTTQRIDVSRNL----LEF------- 251 (329)
Q Consensus 188 ~~~~L~~L~l~~n~-l~~~~p~~l~~~--~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~----l~~------- 251 (329)
.-++|++|.+.++. ++...-..+... .|++|+++++..... ......++++++.+.+.... ++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 22267777665555 333222222222 477777776654311 22223334444443332221 110
Q ss_pred -----ecC--CCCCCCCCCEEEccCCcCcccc-chhhcCCCCC
Q 020203 252 -----NLS--KVEFPQSLTNLDLNHNKIFGSI-PAQITSLENL 286 (329)
Q Consensus 252 -----~~~--~~~~~~~L~~L~l~~n~l~~~~-p~~~~~l~~L 286 (329)
... .....++++.+.+..+...... -..+..++.|
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 000 1345678888888887743222 2445566655
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.10 E-value=0.0017 Score=60.55 Aligned_cols=180 Identities=23% Similarity=0.297 Sum_probs=114.7
Q ss_pred EEEEEeCCCCCCee----cCcCCCCCCCCCEEeCCCCCCCCCCCh----hhhcCC-CCCCEEeccCccCCc----cCccc
Q 020203 70 INSLTIFAGDLPGQ----IPPEVGDLPYLETLMFHKLPSLTGPIQ----PAIAKL-KNLKTLRISWTNISG----PVPDF 136 (329)
Q Consensus 70 v~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~l~~~~~----~~l~~l-~~L~~L~Ls~n~l~~----~~~~~ 136 (329)
...+++.+|.+... +-..+...+.|+.|++++ +.+...-- ..+... ..+++|++..|.+++ .+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 45667777777543 233566788899999998 66664321 222332 567778888888773 34455
Q ss_pred ccCCCCCCEEEccCCcCCC----CCCccC----CCCCCCCEEecccccCccc----CChhhhhcCCCCCeEEcccCcCcc
Q 020203 137 ISQLTNLTFLELSFNNLSG----TIPGSL----SKLQKLGALHLDRNKLTGS----IPESFGTFTGSIPDLYLSHNQLSG 204 (329)
Q Consensus 137 ~~~l~~L~~L~l~~n~l~~----~~p~~l----~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~l~~n~l~~ 204 (329)
+.....++.++++.|.+.. .++..+ ....++++|.++++.++.. +...+......+..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 6667889999999998742 122233 3467888899988887621 112233333236678888888764
Q ss_pred cc----cccccCC--ccCEEEeeCCcCccc----hhhhccCCCCCCEEEccCccce
Q 020203 205 KI----PASLGSM--DFNTIDLSRNKLEGD----ASFLFGLNKTTQRIDVSRNLLE 250 (329)
Q Consensus 205 ~~----p~~l~~~--~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~ 250 (329)
.. .+.+... .++.++++.|.+... ....+..++.++.+.++.|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 32 2222223 568888888888754 3345556678888888888776
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.80 E-value=0.15 Score=25.89 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=8.8
Q ss_pred CCCCEEEccCCcCccccc
Q 020203 260 QSLTNLDLNHNKIFGSIP 277 (329)
Q Consensus 260 ~~L~~L~l~~n~l~~~~p 277 (329)
++|++|++++|+|++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 356666666666554433
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.80 E-value=0.43 Score=24.70 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=5.7
Q ss_pred CCCEEecccccCc
Q 020203 166 KLGALHLDRNKLT 178 (329)
Q Consensus 166 ~L~~L~l~~n~l~ 178 (329)
+|+.|++++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.80 E-value=0.43 Score=24.70 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=5.7
Q ss_pred CCCEEecccccCc
Q 020203 166 KLGALHLDRNKLT 178 (329)
Q Consensus 166 ~L~~L~l~~n~l~ 178 (329)
+|+.|++++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.36 E-value=0.011 Score=49.01 Aligned_cols=88 Identities=18% Similarity=0.136 Sum_probs=64.5
Q ss_pred CCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCC
Q 020203 87 EVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQK 166 (329)
Q Consensus 87 ~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 166 (329)
++..+...+.||++. +.+.. .-..|+-++.|..|+++.|.+. -.|..+++...++.+++..|..+ ..|.+++..+.
T Consensus 37 ei~~~kr~tvld~~s-~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSS-NRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhh-hHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 456677778888877 44432 2234556677778888888877 67777888888888888888777 77888888888
Q ss_pred CCEEecccccCc
Q 020203 167 LGALHLDRNKLT 178 (329)
Q Consensus 167 L~~L~l~~n~l~ 178 (329)
++++++..|.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888877755
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.51 E-value=0.55 Score=24.49 Aligned_cols=18 Identities=33% Similarity=0.659 Sum_probs=10.1
Q ss_pred CCCCEEEccCCcCccccch
Q 020203 260 QSLTNLDLNHNKIFGSIPA 278 (329)
Q Consensus 260 ~~L~~L~l~~n~l~~~~p~ 278 (329)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 34566666666665 4443
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=85.29 E-value=0.48 Score=44.36 Aligned_cols=114 Identities=23% Similarity=0.177 Sum_probs=71.1
Q ss_pred CCCCCCEEeCCCCCCCCCC-ChhhhcCCCCCCEEeccCc-cCCccCc----ccccCCCCCCEEEccCCc-CCCCCCccCC
Q 020203 90 DLPYLETLMFHKLPSLTGP-IQPAIAKLKNLKTLRISWT-NISGPVP----DFISQLTNLTFLELSFNN-LSGTIPGSLS 162 (329)
Q Consensus 90 ~l~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~p~~l~ 162 (329)
.++.|+.+.+..+..+... .-+....++.|+.|+++++ ......+ .....+++|+.++++++. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4678888888876555542 2345567899999999873 2111111 234456889999999887 5543323333
Q ss_pred -CCCCCCEEeccccc-CcccCChhhhhcCCCCCeEEcccCcCc
Q 020203 163 -KLQKLGALHLDRNK-LTGSIPESFGTFTGSIPDLYLSHNQLS 203 (329)
Q Consensus 163 -~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~ 203 (329)
.+++|+.|.+.++. ++...-..+....+.|++|+++++...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 37889999877666 443333333333337999999987653
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.79 E-value=0.23 Score=40.40 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=47.8
Q ss_pred ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceee--cCCC-CCCCCCCEEEccCC-cCccccchhhcCCCCCCEE
Q 020203 214 DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFN--LSKV-EFPQSLTNLDLNHN-KIFGSIPAQITSLENLGFL 289 (329)
Q Consensus 214 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~-~~~~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L 289 (329)
.++.+|-++..+...--+.+..++.++.|.+.++.--+. +..+ ...++|+.|++++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 566666666666555445555666666666666543211 0001 12367888888866 5665556667777777777
Q ss_pred Eeec
Q 020203 290 NVSY 293 (329)
Q Consensus 290 ~l~~ 293 (329)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7765
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.23 E-value=2.8 Score=21.89 Aligned_cols=13 Identities=54% Similarity=0.723 Sum_probs=7.6
Q ss_pred CCCEEEccCCcCc
Q 020203 261 SLTNLDLNHNKIF 273 (329)
Q Consensus 261 ~L~~L~l~~n~l~ 273 (329)
+|++|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4566666666554
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.32 E-value=3.9 Score=21.60 Aligned_cols=14 Identities=50% Similarity=0.622 Sum_probs=9.8
Q ss_pred CCCCEEEccCCcCc
Q 020203 260 QSLTNLDLNHNKIF 273 (329)
Q Consensus 260 ~~L~~L~l~~n~l~ 273 (329)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35777777777775
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.84 E-value=3.1 Score=39.17 Aligned_cols=64 Identities=27% Similarity=0.229 Sum_probs=39.5
Q ss_pred CCCCCCEEEccCccceeec--CC-CCCCCCCCEEEccCC--cCccccchhhc--CCCCCCEEEeecCcCcccC
Q 020203 235 LNKTTQRIDVSRNLLEFNL--SK-VEFPQSLTNLDLNHN--KIFGSIPAQIT--SLENLGFLNVSYNRLCGPI 300 (329)
Q Consensus 235 ~~~~L~~L~l~~n~l~~~~--~~-~~~~~~L~~L~l~~n--~l~~~~p~~~~--~l~~L~~L~l~~n~l~~~~ 300 (329)
+.+.+..+++++|++...- .. ....++|++|+|++| .+. .-.++. +...|++|-+.+|.++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccch
Confidence 4567788888888775321 11 233478888888888 333 122222 2235788888888887653
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=58.57 E-value=7 Score=20.04 Aligned_cols=16 Identities=25% Similarity=0.357 Sum_probs=9.5
Q ss_pred CCCCEEeCCCCCCCCC
Q 020203 92 PYLETLMFHKLPSLTG 107 (329)
Q Consensus 92 ~~L~~L~l~~~~~l~~ 107 (329)
++|+.|++++|..++.
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4566666666555554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.89 E-value=6.9 Score=36.98 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=31.4
Q ss_pred CCCCCEEecccccCcccC-ChhhhhcCCCCCeEEcccCcCcccccccc---cCCccCEEEeeCCcCcc
Q 020203 164 LQKLGALHLDRNKLTGSI-PESFGTFTGSIPDLYLSHNQLSGKIPASL---GSMDFNTIDLSRNKLEG 227 (329)
Q Consensus 164 l~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~p~~l---~~~~L~~L~l~~n~l~~ 227 (329)
.+.+..+++++|++...- -.++....++|+.|+|++|...-....++ ..+.|++|.+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 445556666666654110 11233333467777777772211111122 23367777777777643
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=56.97 E-value=63 Score=30.32 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=20.2
Q ss_pred ccCEEEeeCCcCccchhhh--ccCCCCCCEEEccCc
Q 020203 214 DFNTIDLSRNKLEGDASFL--FGLNKTTQRIDVSRN 247 (329)
Q Consensus 214 ~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~l~~n 247 (329)
.+++|...+|.+.+..... ....+..+.+++.+.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs 390 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRS 390 (553)
T ss_pred eeeEeeccccccccccccccceeecccccccccccc
Confidence 5778888888877654332 233445555555543
No 91
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=41.63 E-value=11 Score=26.75 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=4.4
Q ss_pred CchhhHHHH
Q 020203 1 MSNTSLLSL 9 (329)
Q Consensus 1 m~~~~~l~~ 9 (329)
|+-+.+++|
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 664444433
No 92
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=30.48 E-value=14 Score=24.65 Aligned_cols=6 Identities=33% Similarity=1.315 Sum_probs=3.2
Q ss_pred CCCcCc
Q 020203 53 TDCCDW 58 (329)
Q Consensus 53 ~~~c~~ 58 (329)
.+||+|
T Consensus 62 ~~CC~~ 67 (75)
T PF02950_consen 62 SECCSG 67 (75)
T ss_dssp TCBSSS
T ss_pred CCCCCC
Confidence 345655
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=29.35 E-value=1e+02 Score=29.00 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=17.7
Q ss_pred CCCEEecccccCcccCChhhhhcCC--CCCeEEcccCcC
Q 020203 166 KLGALHLDRNKLTGSIPESFGTFTG--SIPDLYLSHNQL 202 (329)
Q Consensus 166 ~L~~L~l~~n~l~~~~~~~~~~~~~--~L~~L~l~~n~l 202 (329)
.+.+++++.|.....+|..+..... .+++++.+...+
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgi 253 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGI 253 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhccccccccc
Confidence 3556666666665555543322211 344455544433
No 94
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=29.12 E-value=74 Score=19.70 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCCCC
Q 020203 4 TSLLSLFFFLCLCISPSLSDLCNPNDKKVLLKFKKSLNNP 43 (329)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 43 (329)
..++++++++++++.+.--+..-.+=-+++..||+++.+.
T Consensus 6 ~elliI~vi~llvFGp~KLP~l~r~lG~~i~~Fk~~~~~~ 45 (51)
T PRK01470 6 SHLLIVLLIIFVLFGAGKLPQVMSDLAKGLKAFKDGMKDD 45 (51)
T ss_pred HHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhccc
Confidence 4566667777777766543333333445788899887643
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.14 E-value=43 Score=38.40 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=18.5
Q ss_pred EccCccceeecCC-CCCCCCCCEEEccCCcCc
Q 020203 243 DVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIF 273 (329)
Q Consensus 243 ~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~ 273 (329)
||++|.|+...+. +..+.+|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4566666644333 445566777777777654
No 96
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=27.22 E-value=58 Score=23.06 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=26.7
Q ss_pred chhhHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCCC
Q 020203 2 SNTSLLSLFFFLCLCISPSLSDLCNPNDKKVLLKFKKSLNN 42 (329)
Q Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 42 (329)
..+.++++++++++++.+---+....+=-.++-.||.++++
T Consensus 5 g~~elliIlvV~lllfGpkKLP~l~r~~G~~i~~fKk~~~~ 45 (94)
T COG1826 5 GWSELLIILVVALLVFGPKKLPEAGRDLGKAIREFKKAASD 45 (94)
T ss_pred CHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHhh
Confidence 34567777788887777554444444445678888887754
No 97
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=24.66 E-value=63 Score=20.56 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=8.1
Q ss_pred CchhhHHH-HHHHHHH
Q 020203 1 MSNTSLLS-LFFFLCL 15 (329)
Q Consensus 1 m~~~~~l~-~~~~~~~ 15 (329)
|++.++++ ++++++.
T Consensus 1 MA~Kl~vialLC~aLv 16 (65)
T PF10731_consen 1 MASKLIVIALLCVALV 16 (65)
T ss_pred CcchhhHHHHHHHHHH
Confidence 77776655 3444443
No 98
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=23.56 E-value=90 Score=22.02 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCCC
Q 020203 4 TSLLSLFFFLCLCISPSLSDLCNPNDKKVLLKFKKSLNN 42 (329)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 42 (329)
..+++++++++++|.+.--...-.+=-.++..||+++.+
T Consensus 7 ~elliIlvIvlllFG~~KLPelg~~lGk~ik~FKka~~e 45 (92)
T PRK00442 7 KHWIVILVVVVLVFGTKKLKNLGSDVGESIKGFRKAMNE 45 (92)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 355666777777777654443333445678899999864
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.47 E-value=53 Score=37.73 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=19.0
Q ss_pred EcccCcCcccccccccCC-ccCEEEeeCCcCcc
Q 020203 196 YLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEG 227 (329)
Q Consensus 196 ~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~ 227 (329)
+|++|+|+..-+..|..+ +|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 356666664434455555 66677777766654
No 100
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=21.98 E-value=91 Score=20.97 Aligned_cols=39 Identities=10% Similarity=0.126 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCCCC
Q 020203 5 SLLSLFFFLCLCISPSLSDLCNPNDKKVLLKFKKSLNNP 43 (329)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 43 (329)
-++++++++++++.+.--+..-.+=-.++..||+++.+.
T Consensus 8 elliIl~IvlllFG~kKLPelgr~lGkair~FK~~~~~~ 46 (73)
T PRK02958 8 HWLIVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDGMKEG 46 (73)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 455666666767666544444444456888999998653
No 101
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=21.67 E-value=1.1e+02 Score=21.31 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCCCC
Q 020203 5 SLLSLFFFLCLCISPSLSDLCNPNDKKVLLKFKKSLNNP 43 (329)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 43 (329)
.+++++++++++|.+---+..-.+=-.++..||+++.+.
T Consensus 8 eLlIIlvIvLLlFG~kKLPelgr~LGkaireFKka~~e~ 46 (89)
T PRK03554 8 QLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDD 46 (89)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccc
Confidence 456667777777776544433334446788999988643
No 102
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=21.59 E-value=68 Score=20.12 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=13.0
Q ss_pred HHHHHHHhhccCCCCCCHHHHH
Q 020203 10 FFFLCLCISPSLSDLCNPNDKK 31 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~ 31 (329)
..++.+.++-++-+.|.+.+.+
T Consensus 8 ~aiLalsla~s~gavCeesQeQ 29 (59)
T PF03823_consen 8 AAILALSLARSFGAVCEESQEQ 29 (59)
T ss_pred HHHHHHHHHHHhhhhhhhhhhc
Confidence 3344445566677778776553
No 103
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=21.07 E-value=1.1e+02 Score=18.54 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCCC
Q 020203 4 TSLLSLFFFLCLCISPSLSDLCNPNDKKVLLKFKKSLNN 42 (329)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 42 (329)
..++++++++++++.|---+....+=-+++.+||++.++
T Consensus 5 ~ElliI~vi~llvfGp~kLP~~~r~lG~~i~~fk~~~~~ 43 (47)
T TIGR01411 5 PEWLIILVVILLLFGAKKLPELGRDLGKAIKEFKKALKE 43 (47)
T ss_pred HHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhhc
Confidence 455666666666666543333333344567788877653
No 104
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=20.06 E-value=1.4e+02 Score=20.60 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCCCC
Q 020203 5 SLLSLFFFLCLCISPSLSDLCNPNDKKVLLKFKKSLNNP 43 (329)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 43 (329)
.+++++++++++|.+.--+..-.+=-.++-.||+++.+.
T Consensus 8 ELLIIlvIvLLLFG~kKLPeLgr~LGkaIkeFKka~~e~ 46 (85)
T PRK01614 8 KLLVVGILIVLLFGTSKLRTLGADLGAALKGFKKAMRND 46 (85)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccc
Confidence 456666677777775544433334456888999998654
Done!