Query 020203
Match_columns 329
No_of_seqs 289 out of 3829
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 13:21:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 3.3E-52 1.1E-56 368.5 23.1 306 24-329 2-313 (313)
2 3rgz_A Protein brassinosteroid 100.0 2.4E-40 8.1E-45 325.7 22.9 291 22-319 6-355 (768)
3 4eco_A Uncharacterized protein 100.0 8.2E-40 2.8E-44 315.3 18.4 289 25-319 27-445 (636)
4 3rgz_A Protein brassinosteroid 100.0 4.2E-38 1.5E-42 309.7 22.2 260 68-329 418-749 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 2.7E-38 9.2E-43 311.1 18.5 287 22-318 263-684 (876)
6 4fcg_A Uncharacterized protein 100.0 7.6E-36 2.6E-40 265.2 15.0 268 23-297 22-314 (328)
7 3v47_A TOLL-like receptor 5B a 100.0 3.1E-33 1E-37 259.3 23.5 255 68-324 30-412 (455)
8 2z80_A TOLL-like receptor 2, v 100.0 6.2E-33 2.1E-37 249.1 18.5 271 49-324 23-318 (353)
9 2id5_A Lingo-1, leucine rich r 100.0 3.9E-31 1.3E-35 246.7 22.1 255 68-324 32-337 (477)
10 3o6n_A APL1; leucine-rich repe 100.0 3E-31 1E-35 241.2 18.8 245 72-322 73-354 (390)
11 1ogq_A PGIP-2, polygalacturona 100.0 8.7E-32 3E-36 237.6 14.4 225 92-320 50-281 (313)
12 3oja_B Anopheles plasmodium-re 100.0 5.8E-31 2E-35 252.0 20.1 246 71-322 78-360 (597)
13 2z66_A Variable lymphocyte rec 100.0 2.3E-31 7.9E-36 234.1 15.8 265 56-323 7-290 (306)
14 3zyj_A Leucine-rich repeat-con 100.0 7.5E-30 2.6E-34 235.7 24.4 247 72-325 47-297 (440)
15 3zyi_A Leucine-rich repeat-con 100.0 5.5E-30 1.9E-34 237.4 23.5 246 73-325 59-308 (452)
16 1xku_A Decorin; proteoglycan, 100.0 1.7E-29 5.9E-34 224.5 24.6 260 55-322 30-308 (330)
17 2id5_A Lingo-1, leucine rich r 100.0 9.1E-30 3.1E-34 237.4 23.5 240 73-317 16-282 (477)
18 3t6q_A CD180 antigen; protein- 100.0 2.1E-30 7.2E-35 248.6 18.4 253 68-324 278-564 (606)
19 3t6q_A CD180 antigen; protein- 100.0 1.3E-29 4.3E-34 243.2 23.3 250 68-319 33-362 (606)
20 2z66_A Variable lymphocyte rec 100.0 1.3E-29 4.5E-34 222.9 18.6 248 71-324 10-265 (306)
21 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-29 5.2E-34 220.3 18.0 249 71-324 14-265 (285)
22 1wwl_A Monocyte differentiatio 100.0 4.7E-32 1.6E-36 239.2 1.9 264 46-320 21-309 (312)
23 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-29 1.1E-33 237.7 20.7 154 55-211 3-169 (549)
24 4fcg_A Uncharacterized protein 100.0 1.5E-29 5E-34 224.7 17.2 223 90-319 79-313 (328)
25 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-28 5E-33 236.5 25.6 133 68-202 52-185 (635)
26 2ft3_A Biglycan; proteoglycan, 100.0 7.1E-29 2.4E-33 220.8 21.4 257 56-321 33-308 (332)
27 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-29 5.1E-34 242.7 18.0 249 69-325 308-563 (606)
28 3v47_A TOLL-like receptor 5B a 100.0 1E-28 3.6E-33 228.8 22.6 234 68-303 79-414 (455)
29 1ziw_A TOLL-like receptor 3; i 100.0 7.4E-29 2.5E-33 241.0 21.1 257 68-325 329-627 (680)
30 3zyi_A Leucine-rich repeat-con 100.0 1.2E-28 4.2E-33 228.3 21.0 226 68-297 75-303 (452)
31 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-28 4.8E-33 244.3 22.2 259 56-318 14-349 (844)
32 3zyj_A Leucine-rich repeat-con 100.0 4.9E-28 1.7E-32 223.5 23.4 226 68-297 64-292 (440)
33 1ozn_A Reticulon 4 receptor; N 100.0 1.7E-28 5.9E-33 213.6 18.9 226 95-325 14-243 (285)
34 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-28 9.5E-33 231.9 21.7 133 191-324 354-514 (562)
35 1xku_A Decorin; proteoglycan, 100.0 1.2E-27 4.2E-32 212.5 23.9 250 54-320 23-276 (330)
36 1ziw_A TOLL-like receptor 3; i 100.0 3E-28 1E-32 236.7 21.6 247 68-316 25-305 (680)
37 4eco_A Uncharacterized protein 100.0 1.2E-28 4E-33 237.5 17.8 244 69-322 331-602 (636)
38 3vq2_A TLR4, TOLL-like recepto 100.0 5.7E-28 1.9E-32 231.7 22.4 179 68-249 32-216 (606)
39 2ft3_A Biglycan; proteoglycan, 100.0 7.1E-28 2.4E-32 214.3 19.7 239 70-320 35-277 (332)
40 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-28 7.2E-33 230.6 17.0 158 163-324 322-485 (520)
41 4ecn_A Leucine-rich repeat pro 100.0 3.8E-28 1.3E-32 239.1 18.7 242 68-318 491-787 (876)
42 3j0a_A TOLL-like receptor 5; m 100.0 3.4E-28 1.2E-32 241.6 18.3 251 68-325 266-565 (844)
43 2z7x_B TOLL-like receptor 1, v 100.0 3.8E-28 1.3E-32 228.8 17.8 244 68-319 21-411 (520)
44 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-27 6.9E-32 226.0 21.9 230 68-301 52-445 (562)
45 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-27 4.7E-32 226.4 20.5 111 68-179 50-162 (549)
46 3o53_A Protein LRIM1, AGAP0063 100.0 1.6E-28 5.6E-33 217.0 12.5 240 69-322 11-252 (317)
47 2z63_A TOLL-like receptor 4, v 100.0 6.9E-27 2.4E-31 222.4 24.1 112 214-325 422-536 (570)
48 2o6q_A Variable lymphocyte rec 100.0 7E-27 2.4E-31 201.8 20.7 216 53-274 2-219 (270)
49 3oja_A Leucine-rich immune mol 100.0 1.6E-28 5.6E-33 229.2 10.6 241 69-324 35-286 (487)
50 3oja_A Leucine-rich immune mol 100.0 5.8E-28 2E-32 225.5 13.9 234 76-323 18-253 (487)
51 3oja_B Anopheles plasmodium-re 99.9 7E-27 2.4E-31 223.7 19.6 247 68-323 99-383 (597)
52 4fmz_A Internalin; leucine ric 99.9 2.9E-26 1E-30 204.9 21.2 236 68-319 88-345 (347)
53 3o53_A Protein LRIM1, AGAP0063 99.9 8.9E-29 3.1E-33 218.7 4.8 240 68-322 34-277 (317)
54 3o6n_A APL1; leucine-rich repe 99.9 1.9E-26 6.6E-31 209.5 20.2 269 46-319 3-330 (390)
55 2z62_A TOLL-like receptor 4, v 99.9 2.4E-26 8.4E-31 199.0 19.9 216 84-303 22-243 (276)
56 2z63_A TOLL-like receptor 4, v 99.9 5.3E-26 1.8E-30 216.3 22.8 160 68-229 28-193 (570)
57 1wwl_A Monocyte differentiatio 99.9 2.8E-28 9.6E-33 215.1 4.6 222 70-298 65-310 (312)
58 2z62_A TOLL-like receptor 4, v 99.9 5.5E-26 1.9E-30 196.8 17.9 206 117-324 28-241 (276)
59 1p9a_G Platelet glycoprotein I 99.9 7.6E-26 2.6E-30 197.3 18.2 201 88-297 6-208 (290)
60 2o6q_A Variable lymphocyte rec 99.9 3E-25 1E-29 191.6 21.5 203 93-300 17-221 (270)
61 4fmz_A Internalin; leucine ric 99.9 7.2E-25 2.5E-29 195.9 23.0 235 68-320 66-324 (347)
62 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-24 4.5E-29 201.2 23.6 205 68-298 42-247 (457)
63 1o6v_A Internalin A; bacterial 99.9 1.1E-24 3.8E-29 202.5 21.8 234 68-318 68-342 (466)
64 1o6v_A Internalin A; bacterial 99.9 1.1E-24 3.9E-29 202.4 21.3 234 68-320 90-366 (466)
65 3bz5_A Internalin-J, INLJ; leu 99.9 2E-24 6.8E-29 199.9 22.2 227 68-319 64-298 (457)
66 2z80_A TOLL-like receptor 2, v 99.9 1.4E-25 4.8E-30 201.1 12.9 230 68-302 76-319 (353)
67 3rfs_A Internalin B, repeat mo 99.9 9.7E-25 3.3E-29 188.6 16.4 201 89-302 38-240 (272)
68 1p9a_G Platelet glycoprotein I 99.9 2.2E-24 7.4E-29 188.1 18.3 199 68-274 10-209 (290)
69 3rfs_A Internalin B, repeat mo 99.9 1.4E-24 4.8E-29 187.6 16.6 206 68-285 41-247 (272)
70 3m19_A Variable lymphocyte rec 99.9 3.4E-24 1.2E-28 183.0 17.7 190 54-251 3-193 (251)
71 4g8a_A TOLL-like receptor 4; l 99.9 1.4E-23 4.9E-28 201.7 20.3 147 74-225 37-185 (635)
72 2xwt_C Thyrotropin receptor; s 99.9 5.2E-24 1.8E-28 180.5 14.3 200 93-318 32-237 (239)
73 3g06_A SSPH2 (leucine-rich rep 99.9 6.3E-24 2.1E-28 202.7 15.6 244 47-320 13-297 (622)
74 3goz_A Leucine-rich repeat-con 99.9 1.5E-25 5.1E-30 201.7 4.2 247 73-320 3-297 (362)
75 3m19_A Variable lymphocyte rec 99.9 1.4E-23 4.9E-28 179.1 15.3 178 93-275 15-194 (251)
76 1jl5_A Outer protein YOPM; leu 99.9 2.3E-24 7.7E-29 199.4 10.5 225 68-318 11-268 (454)
77 2ca6_A RAN GTPase-activating p 99.9 2.6E-25 8.9E-30 201.8 3.7 233 68-301 32-320 (386)
78 4glp_A Monocyte differentiatio 99.9 7.7E-24 2.6E-28 186.4 12.5 222 93-320 65-307 (310)
79 2xwt_C Thyrotropin receptor; s 99.9 4.1E-23 1.4E-27 174.9 16.2 196 68-270 31-236 (239)
80 4glp_A Monocyte differentiatio 99.9 5.4E-24 1.8E-28 187.4 10.5 223 69-298 65-308 (310)
81 1jl5_A Outer protein YOPM; leu 99.9 1.9E-22 6.4E-27 186.5 21.1 229 68-320 131-409 (454)
82 1h6u_A Internalin H; cell adhe 99.9 1.8E-22 6.2E-27 177.4 18.8 191 91-298 40-231 (308)
83 1h6u_A Internalin H; cell adhe 99.9 7.4E-23 2.5E-27 179.9 15.4 205 98-320 25-230 (308)
84 2ast_B S-phase kinase-associat 99.9 9.8E-25 3.3E-29 194.1 3.2 253 54-319 35-305 (336)
85 2ca6_A RAN GTPase-activating p 99.9 6.8E-25 2.3E-29 199.1 2.1 236 84-321 24-317 (386)
86 3cvr_A Invasion plasmid antige 99.9 2.1E-22 7.2E-27 190.0 13.8 206 47-282 34-252 (571)
87 4ay9_X Follicle-stimulating ho 99.9 6.2E-22 2.1E-26 177.2 14.3 218 92-315 30-254 (350)
88 4ay9_X Follicle-stimulating ho 99.9 2.9E-21 9.8E-26 172.9 16.2 235 56-294 9-256 (350)
89 1z7x_W Ribonuclease inhibitor; 99.9 1.4E-23 4.8E-28 194.6 0.7 180 69-250 86-297 (461)
90 3g06_A SSPH2 (leucine-rich rep 99.9 1E-20 3.5E-25 180.6 20.4 205 69-302 62-302 (622)
91 2o6s_A Variable lymphocyte rec 99.9 2.1E-21 7.3E-26 160.8 13.8 184 55-285 6-190 (208)
92 3goz_A Leucine-rich repeat-con 99.9 4.3E-23 1.5E-27 185.6 3.4 231 68-299 22-299 (362)
93 1z7x_W Ribonuclease inhibitor; 99.9 9E-24 3.1E-28 195.9 -2.3 251 68-320 28-326 (461)
94 2ast_B S-phase kinase-associat 99.9 2E-22 6.8E-27 179.2 5.9 219 93-317 48-282 (336)
95 3cvr_A Invasion plasmid antige 99.9 9E-21 3.1E-25 178.9 17.3 181 93-302 60-248 (571)
96 2o6s_A Variable lymphocyte rec 99.8 5.6E-21 1.9E-25 158.2 12.2 162 68-237 28-189 (208)
97 1h6t_A Internalin B; cell adhe 99.8 4.4E-20 1.5E-24 160.9 15.0 170 90-297 44-213 (291)
98 3e6j_A Variable lymphocyte rec 99.8 1.2E-19 4.2E-24 152.5 17.2 164 47-228 10-174 (229)
99 4b8c_D Glucose-repressible alc 99.8 7.4E-22 2.5E-26 192.3 2.3 261 25-299 129-406 (727)
100 2v9t_B SLIT homolog 2 protein 99.8 7.9E-20 2.7E-24 152.7 13.3 151 144-298 14-166 (220)
101 2xot_A Amphoterin-induced prot 99.8 6.9E-20 2.4E-24 164.6 12.8 174 120-297 21-202 (361)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-19 3.8E-24 151.8 12.4 151 120-274 14-167 (220)
103 2xot_A Amphoterin-induced prot 99.8 1.3E-19 4.6E-24 162.7 13.2 175 95-274 21-203 (361)
104 1h6t_A Internalin B; cell adhe 99.8 5.5E-19 1.9E-23 153.9 15.9 168 68-251 46-214 (291)
105 2v9t_B SLIT homolog 2 protein 99.8 7E-19 2.4E-23 146.9 15.2 151 120-274 14-166 (220)
106 1m9s_A Internalin B; cell inva 99.8 5.5E-19 1.9E-23 168.4 16.0 170 89-273 40-210 (605)
107 3e6j_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 146.8 15.2 153 119-276 21-175 (229)
108 4ezg_A Putative uncharacterize 99.8 5.5E-19 1.9E-23 145.0 13.0 151 140-298 43-195 (197)
109 1m9s_A Internalin B; cell inva 99.8 9.9E-19 3.4E-23 166.6 15.3 169 68-252 43-212 (605)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-18 5.4E-23 144.8 14.6 152 72-228 15-168 (220)
111 4ezg_A Putative uncharacterize 99.8 1E-18 3.4E-23 143.4 11.6 152 114-273 41-194 (197)
112 1xeu_A Internalin C; cellular 99.8 5.3E-19 1.8E-23 151.7 8.4 170 90-275 17-187 (263)
113 1dce_A Protein (RAB geranylger 99.8 5.3E-21 1.8E-25 181.1 -6.8 194 114-314 346-567 (567)
114 1xeu_A Internalin C; cellular 99.8 1.9E-18 6.3E-23 148.3 9.4 166 70-252 21-187 (263)
115 1w8a_A SLIT protein; signaling 99.7 3E-17 1E-21 134.0 12.3 178 120-328 11-192 (192)
116 1w8a_A SLIT protein; signaling 99.7 1.2E-17 4E-22 136.5 8.5 131 95-230 11-143 (192)
117 3ogk_B Coronatine-insensitive 99.7 1.7E-18 5.8E-23 165.3 2.2 230 89-322 267-527 (592)
118 1dce_A Protein (RAB geranylger 99.7 4.6E-20 1.6E-24 174.7 -8.8 195 88-291 345-567 (567)
119 2ell_A Acidic leucine-rich nuc 99.7 1.3E-16 4.5E-21 127.2 12.5 134 115-251 22-161 (168)
120 4b8c_D Glucose-repressible alc 99.7 6.6E-18 2.3E-22 164.5 4.7 179 83-273 215-404 (727)
121 2ell_A Acidic leucine-rich nuc 99.7 2.6E-16 8.9E-21 125.5 11.8 131 165-298 24-161 (168)
122 2je0_A Acidic leucine-rich nuc 99.7 1.6E-16 5.5E-21 124.1 10.3 127 116-245 16-148 (149)
123 3ogk_B Coronatine-insensitive 99.7 7.8E-18 2.7E-22 160.7 3.2 83 161-245 266-350 (592)
124 2wfh_A SLIT homolog 2 protein 99.7 6.6E-16 2.3E-20 126.1 12.2 126 168-298 13-140 (193)
125 2je0_A Acidic leucine-rich nuc 99.6 2.6E-16 9E-21 122.9 8.3 127 68-198 17-148 (149)
126 2o6r_A Variable lymphocyte rec 99.6 2.2E-15 7.6E-20 121.2 13.8 114 92-207 28-141 (177)
127 2wfh_A SLIT homolog 2 protein 99.6 1.8E-15 6.2E-20 123.5 13.2 126 95-226 13-139 (193)
128 2o6r_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 119.5 13.2 85 118-203 29-113 (177)
129 1ds9_A Outer arm dynein; leuci 99.6 3.6E-17 1.2E-21 134.2 -2.7 133 113-251 14-154 (198)
130 2p1m_B Transport inhibitor res 99.6 3.4E-17 1.2E-21 156.3 -3.9 249 68-319 184-518 (594)
131 1a9n_A U2A', U2A'; complex (nu 99.6 6.5E-15 2.2E-19 118.3 9.6 133 113-250 15-153 (176)
132 2p1m_B Transport inhibitor res 99.6 1.7E-16 5.7E-21 151.5 -0.5 130 68-198 105-243 (594)
133 1a9n_A U2A', U2A'; complex (nu 99.6 5.4E-15 1.8E-19 118.8 8.3 105 191-298 43-154 (176)
134 1ds9_A Outer arm dynein; leuci 99.6 4.7E-17 1.6E-21 133.5 -4.7 153 137-297 14-185 (198)
135 3sb4_A Hypothetical leucine ri 99.5 6.5E-15 2.2E-19 130.4 7.7 98 214-313 227-327 (329)
136 3sb4_A Hypothetical leucine ri 99.5 3.5E-14 1.2E-18 125.6 11.8 172 116-291 100-328 (329)
137 3g39_A Variable lymphocyte rec 99.5 4.5E-13 1.6E-17 106.9 12.5 106 71-180 12-117 (170)
138 2r9u_A Variable lymphocyte rec 99.5 7.4E-13 2.5E-17 106.0 12.9 104 71-178 15-118 (174)
139 3g39_A Variable lymphocyte rec 99.4 7.5E-13 2.6E-17 105.6 11.9 104 95-203 12-115 (170)
140 4fdw_A Leucine rich hypothetic 99.4 1.3E-11 4.4E-16 111.9 20.0 197 86-293 130-332 (401)
141 2r9u_A Variable lymphocyte rec 99.4 1.8E-12 6.1E-17 103.8 12.1 104 95-203 15-118 (174)
142 4fdw_A Leucine rich hypothetic 99.4 3E-11 1E-15 109.5 21.0 235 70-317 137-380 (401)
143 2ifg_A High affinity nerve gro 99.3 6.3E-12 2.2E-16 111.8 11.9 102 75-179 15-117 (347)
144 3un9_A NLR family member X1; l 99.3 7E-14 2.4E-18 125.6 -1.1 165 116-280 71-259 (372)
145 3un9_A NLR family member X1; l 99.3 3.6E-13 1.2E-17 121.0 -0.3 180 92-273 72-283 (372)
146 2ifg_A High affinity nerve gro 99.3 2E-11 6.7E-16 108.6 10.6 106 95-204 11-117 (347)
147 2ra8_A Uncharacterized protein 99.0 1.7E-09 5.8E-14 96.4 9.6 155 135-295 166-341 (362)
148 2ra8_A Uncharacterized protein 98.9 7.3E-10 2.5E-14 98.8 4.6 198 68-271 107-341 (362)
149 3rw6_A Nuclear RNA export fact 98.7 8.7E-10 3E-14 93.6 -1.4 66 115-182 168-237 (267)
150 4fs7_A Uncharacterized protein 98.6 4E-06 1.4E-10 75.6 19.5 238 69-317 72-353 (394)
151 4gt6_A Cell surface protein; l 98.6 2.7E-06 9.2E-11 76.7 18.2 64 230-295 304-368 (394)
152 4fs7_A Uncharacterized protein 98.6 2.6E-06 8.9E-11 76.8 17.9 61 87-150 157-217 (394)
153 1io0_A Tropomodulin; LRR prote 98.6 8.6E-09 2.9E-13 83.0 0.6 42 113-154 32-78 (185)
154 1io0_A Tropomodulin; LRR prote 98.6 2.1E-08 7.1E-13 80.8 2.6 118 84-203 28-164 (185)
155 4gt6_A Cell surface protein; l 98.5 9.6E-06 3.3E-10 73.1 18.2 60 256-318 307-368 (394)
156 4h09_A Hypothetical leucine ri 98.3 0.00014 4.6E-09 65.0 21.2 100 214-316 241-342 (379)
157 3rw6_A Nuclear RNA export fact 98.2 9.3E-07 3.2E-11 75.0 4.6 79 90-171 168-257 (267)
158 3e4g_A ATP synthase subunit S, 98.1 1.7E-06 5.8E-11 68.3 2.8 83 69-151 62-149 (176)
159 3e4g_A ATP synthase subunit S, 97.9 1.8E-05 6.1E-10 62.4 6.4 34 142-175 62-95 (176)
160 4h09_A Hypothetical leucine ri 97.8 0.0015 5.1E-08 58.2 17.8 130 160-294 212-343 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 4.4E-05 1.5E-09 61.3 2.2 83 214-296 71-169 (197)
162 3rfe_A Platelet glycoprotein I 97.4 0.00015 5.3E-09 54.3 4.7 55 241-297 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00016 5.4E-09 58.1 4.4 42 113-154 66-111 (197)
164 3rfe_A Platelet glycoprotein I 96.9 0.0019 6.4E-08 48.3 5.9 56 216-273 11-68 (130)
165 2lz0_A Uncharacterized protein 60.2 12 0.00043 25.7 4.4 39 86-126 14-52 (100)
166 2lz0_A Uncharacterized protein 37.0 97 0.0033 21.0 6.5 41 109-150 12-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.3e-52 Score=368.51 Aligned_cols=306 Identities=48% Similarity=0.906 Sum_probs=289.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcC--ccceEecCCC--CcEEEEEeCCCCCCe--ecCcCCCCCCCCCEE
Q 020203 24 LCNPNDKKVLLKFKKSLNNPYVLASWNPKTDCCD--WYCVTCDLTT--NRINSLTIFAGDLPG--QIPPEVGDLPYLETL 97 (329)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~c~--~~gv~c~~~~--~~v~~l~l~~~~l~~--~~~~~l~~l~~L~~L 97 (329)
.|.++|+.||++||+++.++..+.+|..+++||. |.||.|+... ++|+.++++++.+.+ .+|+.+..+++|++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L 81 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCee
Confidence 5999999999999999988877889988889998 9999998644 799999999999999 899999999999999
Q ss_pred eCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccC
Q 020203 98 MFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKL 177 (329)
Q Consensus 98 ~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 177 (329)
++++++.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+
T Consensus 82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161 (313)
T ss_dssp EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence 99943789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhhhcCCCCCeEEcccCcCcccccccccCCccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCC
Q 020203 178 TGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVE 257 (329)
Q Consensus 178 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 257 (329)
++.+|..+..+..+|++|++++|.+++.+|..+..++|++|++++|.+++..+..+..+++|++|++++|.+++.++.+.
T Consensus 162 ~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 241 (313)
T 1ogq_A 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241 (313)
T ss_dssp EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCC
T ss_pred cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCccc
Confidence 99999999988668999999999999999999988899999999999999999999999999999999999998888888
Q ss_pred CCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCCCCCCCCCCCCC
Q 020203 258 FPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESCK 329 (329)
Q Consensus 258 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~~~~~~~~c~ 329 (329)
.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|...++++|+.+++.+|+++||.|++.|.
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999999994
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-40 Score=325.69 Aligned_cols=291 Identities=24% Similarity=0.345 Sum_probs=200.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcCccceEecCCCCcEEEEEeCCCCCCee---cC-------------
Q 020203 22 SDLCNPNDKKVLLKFKKSLNNPYVLASWNPKTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQ---IP------------- 85 (329)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~~~v~~l~l~~~~l~~~---~~------------- 85 (329)
++++.++|++||++||+++.||..+.+|..+++||.|.||+|+ .++|+.++++++.+.|. +|
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred cccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 3344678999999999999887778999988899999999998 58999999999999887 44
Q ss_pred ----------cCCCCCCCCCEEeCCCCCCCCCCChh--hhcCCCCCCEEeccCccCCccCcccc-cCCCCCCEEEccCCc
Q 020203 86 ----------PEVGDLPYLETLMFHKLPSLTGPIQP--AIAKLKNLKTLRISWTNISGPVPDFI-SQLTNLTFLELSFNN 152 (329)
Q Consensus 86 ----------~~l~~l~~L~~L~l~~~~~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~ 152 (329)
..++.+++|++|++++ +.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++|+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSR-NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCS-SEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCC-CcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 4566777777777777 677776776 77777777777777777776666554 567777777777777
Q ss_pred CCCCCCcc---CCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccc
Q 020203 153 LSGTIPGS---LSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGD 228 (329)
Q Consensus 153 l~~~~p~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~ 228 (329)
+++..|.. +.++++|++|++++|.+.+..+. ..+. +|++|++++|.+++.+|. ++.+ +|++|++++|.+++.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~-~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCV-NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCT-TCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCC-cCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 76555544 55556666666666655544432 4444 666666666666655554 5555 677777777777666
Q ss_pred hhhhccCCCCCCEEEccCccceeecCCC-----------------------CC-CCCCCEEEccCCcCccccchhhcCCC
Q 020203 229 ASFLFGLNKTTQRIDVSRNLLEFNLSKV-----------------------EF-PQSLTNLDLNHNKIFGSIPAQITSLE 284 (329)
Q Consensus 229 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----------------------~~-~~~L~~L~l~~n~l~~~~p~~~~~l~ 284 (329)
.+..++.+++|++|++++|.+++.++.. .. +++|++|++++|++++.+|..++.++
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 6666666666666666666665444332 11 25566666666666666666666666
Q ss_pred CCCEEEeecCcCcccCCC--CCccCccCcccccCCCC
Q 020203 285 NLGFLNVSYNRLCGPIPV--GGKLQSFGYTEYFHNRC 319 (329)
Q Consensus 285 ~L~~L~l~~n~l~~~~p~--~~~l~~L~~l~l~~n~~ 319 (329)
+|++|++++|++.|.+|. +..+++|+.+++++|..
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 666666666666666664 35666666666666653
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.2e-40 Score=315.32 Aligned_cols=289 Identities=20% Similarity=0.275 Sum_probs=241.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCC---------CCCCCCCCCCcCc---cceEecCCCCcEEEEEeCCCCCCeecCcCCCCCC
Q 020203 25 CNPNDKKVLLKFKKSLNNPYV---------LASWNPKTDCCDW---YCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLP 92 (329)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~---------~~~w~~~~~~c~~---~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~ 92 (329)
...+|+.||.+++++++++.| ..+|+.++++|.| .||+|+.. ++|++|+++++++.|.+|+++++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 334689999999999976542 2379988999999 99999854 8999999999999999999999999
Q ss_pred CCCEEeCCCCC---------------------------------------------------------------------
Q 020203 93 YLETLMFHKLP--------------------------------------------------------------------- 103 (329)
Q Consensus 93 ~L~~L~l~~~~--------------------------------------------------------------------- 103 (329)
+|++|++++++
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 99999998831
Q ss_pred --------CCCCCChhhhcCCCCCCEEeccCccCCcc-----------------Cccccc--CCCCCCEEEccCCcCCCC
Q 020203 104 --------SLTGPIQPAIAKLKNLKTLRISWTNISGP-----------------VPDFIS--QLTNLTFLELSFNNLSGT 156 (329)
Q Consensus 104 --------~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~ 156 (329)
.+++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|++.+.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 2334 788899999999999999999985 999999 999999999999999999
Q ss_pred CCccCCCCCCCCEEeccccc-Ccc-cCChhhhhc------CCCCCeEEcccCcCcccccc--cccCC-ccCEEEeeCCcC
Q 020203 157 IPGSLSKLQKLGALHLDRNK-LTG-SIPESFGTF------TGSIPDLYLSHNQLSGKIPA--SLGSM-DFNTIDLSRNKL 225 (329)
Q Consensus 157 ~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~------~~~L~~L~l~~n~l~~~~p~--~l~~~-~L~~L~l~~n~l 225 (329)
+|..++++++|++|++++|. ++| .+|..++.+ . +|++|++++|.++ .+|. .++.+ +|++|++++|.+
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC-CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence 99999999999999999998 998 899988886 6 8999999999999 7888 88888 899999999999
Q ss_pred ccchhhhccCCCCCCEEEccCccceeecCCCCCCCC-CCEEEccCCcCccccchhhcCCC--CCCEEEeecCcCcccCCC
Q 020203 226 EGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQS-LTNLDLNHNKIFGSIPAQITSLE--NLGFLNVSYNRLCGPIPV 302 (329)
Q Consensus 226 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~l~~n~l~~~~p~ 302 (329)
+|.+| .++.+++|++|++++|.++..+..+..+++ |++|++++|+++ .+|..+..++ +|+.|++++|++.+.+|.
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred ccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 97777 778888888888888888855445666666 888888888877 6776665544 677777777777776654
Q ss_pred -CC-------ccCccCcccccCCCC
Q 020203 303 -GG-------KLQSFGYTEYFHNRC 319 (329)
Q Consensus 303 -~~-------~l~~L~~l~l~~n~~ 319 (329)
+. .+++|+.|++++|..
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l 445 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQI 445 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred hhcccccccccCCCCCEEECcCCcc
Confidence 23 445666666666653
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.2e-38 Score=309.66 Aligned_cols=260 Identities=32% Similarity=0.504 Sum_probs=238.9
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|.+.+.+|..+..+++|++|++++ +.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL-NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCC-CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 4678888888888888888888899999999998 788888999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccC---------------
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGS--------------- 212 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~--------------- 212 (329)
+++|++++.+|..++.+++|++|++++|.+.+.+|..+..++ +|++|++++|.++|.+|..+..
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 999999999999999999999999999999999999999998 9999999999998877765422
Q ss_pred -------------------------------------------------------C-ccCEEEeeCCcCccchhhhccCC
Q 020203 213 -------------------------------------------------------M-DFNTIDLSRNKLEGDASFLFGLN 236 (329)
Q Consensus 213 -------------------------------------------------------~-~L~~L~l~~n~l~~~~~~~~~~~ 236 (329)
+ .|+.|++++|+++|.+|..++.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 2 57899999999999999999999
Q ss_pred CCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCccccc
Q 020203 237 KTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYF 315 (329)
Q Consensus 237 ~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~ 315 (329)
+.|+.|++++|.++|.+|. +..+++|++||+++|+++|.+|..++.+++|++|++++|+++|.||..+++..+....+.
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~ 735 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGC
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhc
Confidence 9999999999999988876 788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC
Q 020203 316 HNRCLCGAPLESCK 329 (329)
Q Consensus 316 ~n~~~~~~~~~~c~ 329 (329)
||+.+||.|++.|.
T Consensus 736 gN~~Lcg~~l~~C~ 749 (768)
T 3rgz_A 736 NNPGLCGYPLPRCD 749 (768)
T ss_dssp SCTEEESTTSCCCC
T ss_pred CCchhcCCCCcCCC
Confidence 99999999988884
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.7e-38 Score=311.14 Aligned_cols=287 Identities=22% Similarity=0.292 Sum_probs=237.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCCCCCCCC-----CC--cCc------------cceEecCCCCcEEEEEeCCCCCCe
Q 020203 22 SDLCNPNDKKVLLKFKKSLNNPYVLASWNPKT-----DC--CDW------------YCVTCDLTTNRINSLTIFAGDLPG 82 (329)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~gv~c~~~~~~v~~l~l~~~~l~~ 82 (329)
++++..+|+.||++||+++++| +|..++ ++ |.| .||.|+. .++|+.|+++++++.|
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred ccccchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence 3445567999999999999876 565443 55 999 9999985 5899999999999999
Q ss_pred ecCcCCCCCCCCCEEeC-CCCCCCCCC-----------------------------------------------------
Q 020203 83 QIPPEVGDLPYLETLMF-HKLPSLTGP----------------------------------------------------- 108 (329)
Q Consensus 83 ~~~~~l~~l~~L~~L~l-~~~~~l~~~----------------------------------------------------- 108 (329)
.+|++++++++|+.|++ ++ |.+.|.
T Consensus 338 ~ip~~l~~L~~L~~LdLss~-N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EECGGGGGCTTCCEEESCCT-THHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred cCchHHhccccceEeeeccc-ccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 99999999999999999 54 533222
Q ss_pred -----------------------ChhhhcCCCCCCEEeccCccCCc-----------------cCccccc--CCCCCCEE
Q 020203 109 -----------------------IQPAIAKLKNLKTLRISWTNISG-----------------PVPDFIS--QLTNLTFL 146 (329)
Q Consensus 109 -----------------------~~~~l~~l~~L~~L~Ls~n~l~~-----------------~~~~~~~--~l~~L~~L 146 (329)
+|..++++++|++|+|++|.+++ .+|..++ ++++|++|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 78889999999999999999997 3898887 99999999
Q ss_pred EccCCcCCCCCCccCCCCCCCCEEeccccc-Ccc-cCChhhhhcC------CCCCeEEcccCcCcccccc--cccCC-cc
Q 020203 147 ELSFNNLSGTIPGSLSKLQKLGALHLDRNK-LTG-SIPESFGTFT------GSIPDLYLSHNQLSGKIPA--SLGSM-DF 215 (329)
Q Consensus 147 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~------~~L~~L~l~~n~l~~~~p~--~l~~~-~L 215 (329)
++++|++.+.+|..++++++|+.|++++|. ++| .+|..++.+. ++|++|++++|.++ .+|. .+..+ +|
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L 575 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKL 575 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTC
T ss_pred ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCC
Confidence 999999999999999999999999999998 988 7888776653 37999999999999 7888 88888 89
Q ss_pred CEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCC-CCEEEccCCcCccccchhhcCCCC--CCEEEee
Q 020203 216 NTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQS-LTNLDLNHNKIFGSIPAQITSLEN--LGFLNVS 292 (329)
Q Consensus 216 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~~~~l~~--L~~L~l~ 292 (329)
+.|++++|.++ .+| .++.+++|++|++++|.++..+..+..+++ |++|++++|+++ .+|..+..++. |+.|+++
T Consensus 576 ~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 576 GLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp CEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred CEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECc
Confidence 99999999998 555 788899999999999999854445677777 999999999988 78877766644 8888888
Q ss_pred cCcCcccCCCCC------ccCccCcccccCCC
Q 020203 293 YNRLCGPIPVGG------KLQSFGYTEYFHNR 318 (329)
Q Consensus 293 ~n~l~~~~p~~~------~l~~L~~l~l~~n~ 318 (329)
+|++.|.+|... ..++|+.|++++|.
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 888888766432 23355555555554
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=7.6e-36 Score=265.24 Aligned_cols=268 Identities=17% Similarity=0.238 Sum_probs=224.9
Q ss_pred CCCCHHHHHHHHHHHHhC-CCCC-CCCCC----CCCCCCcCccceEecC--------CCCcEEEEEeCCCCCCeecCcCC
Q 020203 23 DLCNPNDKKVLLKFKKSL-NNPY-VLASW----NPKTDCCDWYCVTCDL--------TTNRINSLTIFAGDLPGQIPPEV 88 (329)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~-~~~~-~~~~w----~~~~~~c~~~gv~c~~--------~~~~v~~l~l~~~~l~~~~~~~l 88 (329)
..+..+|+.||++||.++ .++. +...| ....++|.|.|+.|+. ...+|+.++++++.+. .+|+.+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 344567999999999988 3443 56778 4567899999999952 3468999999999997 788889
Q ss_pred CCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCC-----
Q 020203 89 GDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSK----- 163 (329)
Q Consensus 89 ~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~----- 163 (329)
..+++|++|++++ +.++ .+|..++++++|++|++++|.+. .+|..+..+++|++|++++|++.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~-n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 101 FRLSHLQHMTIDA-AGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGTTCSEEEEES-SCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhCCCCCEEECCC-CCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 9999999999999 7888 78888999999999999999999 88988999999999999999888888887764
Q ss_pred ----CCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCC
Q 020203 164 ----LQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKT 238 (329)
Q Consensus 164 ----l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~ 238 (329)
+++|++|++++|.++ .+|..+..++ +|++|++++|.+++ +|..+..+ +|++|++++|.+.+..|..++.+++
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCT-TCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCC-CCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 889999999999988 8888888888 89999999999884 66677777 8899999998888888888888888
Q ss_pred CCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCc
Q 020203 239 TQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLC 297 (329)
Q Consensus 239 L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 297 (329)
|++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..++.+++|+.+++..+.+.
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888888887776664 667788888888888888888888888888888888876554
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.1e-33 Score=259.29 Aligned_cols=255 Identities=21% Similarity=0.213 Sum_probs=175.4
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCC-hhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPI-QPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFL 146 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 146 (329)
.+++.+++++|.+.+..|..+.++++|++|++++ +.+.+.+ +..|.++++|++|++++|.+.+..|..+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ-QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCC-CSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcC-CcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 5688899999988887788888888888888888 6665444 4567778888888888888776667777777777777
Q ss_pred EccCCcCCCCCCcc--CCCCCCCCEEecccccCcccCChh-hhhcCCCCCeEEcccCcCccccc----------------
Q 020203 147 ELSFNNLSGTIPGS--LSKLQKLGALHLDRNKLTGSIPES-FGTFTGSIPDLYLSHNQLSGKIP---------------- 207 (329)
Q Consensus 147 ~l~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~p---------------- 207 (329)
++++|++++..+.. +..+++|++|++++|.+.+..|.. +..++ +|++|++++|.+++..+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR-RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT-TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC-cccEEeCCCCcccccChhhhhcccccccccccc
Confidence 77777776544333 666666666666666666555544 44554 56666655555543322
Q ss_pred --------------------------------------------------------------------------------
Q 020203 208 -------------------------------------------------------------------------------- 207 (329)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (329)
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence
Q ss_pred -------------------------ccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CCCCC
Q 020203 208 -------------------------ASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQ 260 (329)
Q Consensus 208 -------------------------~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~ 260 (329)
..+..+ +|++|++++|.+++..+..|..+++|++|++++|.+++..+. +..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 223333 455555555555555555555666666666666666554433 45567
Q ss_pred CCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccCCCCCCCCC
Q 020203 261 SLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNRCLCGAP 324 (329)
Q Consensus 261 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~~~~~~~ 324 (329)
+|++|++++|++++..|..+..+++|++|++++|++++..+. +..+++|+.+++++|+..|++|
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 778888888887766677778888888888888888865443 3678889999999999888876
No 8
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.2e-33 Score=249.07 Aligned_cols=271 Identities=19% Similarity=0.239 Sum_probs=228.9
Q ss_pred CCCCCCCcCccceEecCC-----------CCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCC
Q 020203 49 WNPKTDCCDWYCVTCDLT-----------TNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLK 117 (329)
Q Consensus 49 w~~~~~~c~~~gv~c~~~-----------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~ 117 (329)
|......|.|.++ |+.. ..+++.+++++|.+.+..+..+..+++|++|++++ +.+++..+..|.+++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-NGINTIEEDSFSSLG 100 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCC-CccCccCHhhcCCCC
Confidence 4455567888887 6532 23789999999999987777899999999999999 889988888899999
Q ss_pred CCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCc--cCCCCCCCCEEecccc-cCcccCChhhhhcCCCCCe
Q 020203 118 NLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPG--SLSKLQKLGALHLDRN-KLTGSIPESFGTFTGSIPD 194 (329)
Q Consensus 118 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~ 194 (329)
+|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|++|++++| .+.+..+..+..++ +|++
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~ 178 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT-FLEE 178 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCC-CCCE
Confidence 9999999999999655555899999999999999999 4554 7899999999999999 47656677888888 9999
Q ss_pred EEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC----CCCCCCCCEEEccC
Q 020203 195 LYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK----VEFPQSLTNLDLNH 269 (329)
Q Consensus 195 L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~L~~L~l~~ 269 (329)
|++++|.+++..|..+..+ +|++|++++|.+.......+..+++|++|++++|.+++..+. ......++.+++++
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 9999999998888899888 999999999999877766777799999999999999865432 23456789999999
Q ss_pred CcCcc----ccchhhcCCCCCCEEEeecCcCcccCCC--CCccCccCcccccCCCCCCCCC
Q 020203 270 NKIFG----SIPAQITSLENLGFLNVSYNRLCGPIPV--GGKLQSFGYTEYFHNRCLCGAP 324 (329)
Q Consensus 270 n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~l~~L~~l~l~~n~~~~~~~ 324 (329)
+.+.+ .+|..+..+++|+.|++++|+++ .+|. +..+++|+.+++++|+..|+++
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99876 47888999999999999999999 4554 3789999999999999999864
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=3.9e-31 Score=246.73 Aligned_cols=255 Identities=18% Similarity=0.150 Sum_probs=175.8
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.|++++|.+.+..+..|..+++|++|++++ +.+++..|..|.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNE-NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCC-CccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 3566777777777766666677777777777777 566666666667777777777777766644444456666666666
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccC------------------------cCc
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHN------------------------QLS 203 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n------------------------~l~ 203 (329)
+++|++++..+..+..+++|++|++++|.+.+..+..+..+. +|++|++++| .+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT-TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC-CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 666666655555555555555555555555544444444444 4444444444 443
Q ss_pred ccccccccCC-------------------------ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CC
Q 020203 204 GKIPASLGSM-------------------------DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VE 257 (329)
Q Consensus 204 ~~~p~~l~~~-------------------------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~ 257 (329)
+..+..+..+ +|+.|++++|.++...+..+..+++|++|++++|.+++..+. +.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 3222223222 345555555666665556778888999999999998876654 67
Q ss_pred CCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccCCCCCCCCC
Q 020203 258 FPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNRCLCGAP 324 (329)
Q Consensus 258 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~~~~~~~ 324 (329)
.+++|++|++++|++++..|..+..+++|+.|++++|++++..+. +..+++|+.+++.+|++.|++.
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 788999999999999988888999999999999999999975554 4788999999999999999864
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3e-31 Score=241.24 Aligned_cols=245 Identities=20% Similarity=0.152 Sum_probs=143.3
Q ss_pred EEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCC
Q 020203 72 SLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFN 151 (329)
Q Consensus 72 ~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 151 (329)
.++++++.+.+..+..+..+++|++|++++ +.+++..|..++++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcccccChhhccCCCCcCEEECCC-CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence 344444444444344445555555555555 4444444444455555555555555555222222344555555555555
Q ss_pred cCCCCCCccCCCCCCCCEEecccccCcccCChhhhhc----------------C--------------------CCCCeE
Q 020203 152 NLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTF----------------T--------------------GSIPDL 195 (329)
Q Consensus 152 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~----------------~--------------------~~L~~L 195 (329)
++++..+..+..+++|++|++++|.+++.-...+..+ . .+|++|
T Consensus 152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L 231 (390)
T 3o6n_A 152 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 231 (390)
T ss_dssp CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEE
T ss_pred ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEE
Confidence 5554444445555555555555555442211111000 0 012222
Q ss_pred EcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCcc
Q 020203 196 YLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFG 274 (329)
Q Consensus 196 ~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 274 (329)
++++|.+++. ..+..+ +|++|++++|.+++..+..+..+++|++|++++|.+++.......+++|++|++++|+++
T Consensus 232 ~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~- 308 (390)
T 3o6n_A 232 KLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL- 308 (390)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-
T ss_pred ECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-
Confidence 2222222211 223333 677788888888777777788888888888888888876655666788888888888887
Q ss_pred ccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCCCCCC
Q 020203 275 SIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCG 322 (329)
Q Consensus 275 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~~~ 322 (329)
.+|..+..+++|+.|++++|++++. | ...+++|+.+++++|++-|+
T Consensus 309 ~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 309 HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccch
Confidence 5677777888889999998888753 3 56788899999999988765
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=8.7e-32 Score=237.60 Aligned_cols=225 Identities=29% Similarity=0.436 Sum_probs=209.0
Q ss_pred CCCCEEeCCCCCCCCC--CChhhhcCCCCCCEEeccC-ccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCC
Q 020203 92 PYLETLMFHKLPSLTG--PIQPAIAKLKNLKTLRISW-TNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLG 168 (329)
Q Consensus 92 ~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 168 (329)
.+++.|++++ +.+.+ .+|..+.++++|++|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+..+++|+
T Consensus 50 ~~l~~L~L~~-~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSG-LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEEC-CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCC-CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 4799999999 89998 8999999999999999995 999999999999999999999999999999999999999999
Q ss_pred EEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC--ccCEEEeeCCcCccchhhhccCCCCCCEEEccC
Q 020203 169 ALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM--DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSR 246 (329)
Q Consensus 169 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 246 (329)
+|++++|.+.+.+|..+..++ +|++|++++|.+++.+|..+..+ .|++|++++|.+++..+..+..++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 999999999999999999998 99999999999999999999887 799999999999999999998887 99999999
Q ss_pred ccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccCCCCC
Q 020203 247 NLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNRCL 320 (329)
Q Consensus 247 n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~~~ 320 (329)
|.+++.++. +..+++|++|++++|++++.+|. +..+++|++|++++|++++.+|. +..+++|+.+++++|+..
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 999987665 67889999999999999977665 78899999999999999998886 588999999999999754
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.8e-31 Score=252.03 Aligned_cols=246 Identities=20% Similarity=0.151 Sum_probs=154.1
Q ss_pred EEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccC
Q 020203 71 NSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSF 150 (329)
Q Consensus 71 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 150 (329)
+.|++++|.+.+..+..|..+++|++|++++ +.+++..|..|+++++|++|++++|.+++..+..|+.+++|++|++++
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCC-CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 3444555555544444555555555555555 455554444455555555555555555533333345555555555555
Q ss_pred CcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcC------------------------------------CCCCe
Q 020203 151 NNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFT------------------------------------GSIPD 194 (329)
Q Consensus 151 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~------------------------------------~~L~~ 194 (329)
|.+++..|..++.+++|++|++++|.+++.....+..+. .+|+.
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~ 236 (597)
T 3oja_B 157 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI 236 (597)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCE
T ss_pred CcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCE
Confidence 555544454555555555555555555432111111000 01233
Q ss_pred EEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCc
Q 020203 195 LYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIF 273 (329)
Q Consensus 195 L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 273 (329)
|++++|.+++ +..+..+ +|+.|++++|.+++..+..|..+++|++|++++|.+++.+.....+++|++|++++|.++
T Consensus 237 L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp EECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC
T ss_pred EECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC
Confidence 3333333332 1234444 688888888888888888888888899999999888877666666788999999999988
Q ss_pred cccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCCCCCC
Q 020203 274 GSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCG 322 (329)
Q Consensus 274 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~~~ 322 (329)
.+|..+..+++|+.|++++|++.+. | ...+++|+.|++++|++-|+
T Consensus 315 -~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 315 -HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp -CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred -ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCCh
Confidence 6787888889999999999998764 3 56788999999999998765
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.3e-31 Score=234.13 Aligned_cols=265 Identities=18% Similarity=0.196 Sum_probs=185.9
Q ss_pred cCccceEecCC---------CCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCC--ChhhhcCCCCCCEEec
Q 020203 56 CDWYCVTCDLT---------TNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGP--IQPAIAKLKNLKTLRI 124 (329)
Q Consensus 56 c~~~gv~c~~~---------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~--~~~~l~~l~~L~~L~L 124 (329)
|.|.++.|+.. ..+++.+++++|.+....+..+..+++|++|++++ +.++.. .+..+..+++|++|++
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS-NGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCC-CccCcccCcccccccccccCEEEC
Confidence 78888888642 13677888888877643333467788888888887 666532 3556667788888888
Q ss_pred cCccCCccCcccccCCCCCCEEEccCCcCCCCCC-ccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCc
Q 020203 125 SWTNISGPVPDFISQLTNLTFLELSFNNLSGTIP-GSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLS 203 (329)
Q Consensus 125 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 203 (329)
++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+.
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECCCCccc
Confidence 888777 566667778888888888887774443 4677778888888888887766777777776 7888888888777
Q ss_pred c-cccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhh
Q 020203 204 G-KIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQI 280 (329)
Q Consensus 204 ~-~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~ 280 (329)
+ ..|..+..+ +|++|++++|.+++..+..+..+++|++|++++|.+++..+. +..+++|++|++++|++++..|..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 5 456667666 788888888888777777777777888888888877765442 5566778888888888877777777
Q ss_pred cCCC-CCCEEEeecCcCcccCCC--C-CccCccCcccccCCCCCCCC
Q 020203 281 TSLE-NLGFLNVSYNRLCGPIPV--G-GKLQSFGYTEYFHNRCLCGA 323 (329)
Q Consensus 281 ~~l~-~L~~L~l~~n~l~~~~p~--~-~~l~~L~~l~l~~n~~~~~~ 323 (329)
..++ +|++|++++|++.+..+. + .-+...+.+....+...|..
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~ 290 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 290 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCC
Confidence 7764 788888888877764321 1 12333444444555555543
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=7.5e-30 Score=235.67 Aligned_cols=247 Identities=19% Similarity=0.173 Sum_probs=201.5
Q ss_pred EEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCC
Q 020203 72 SLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFN 151 (329)
Q Consensus 72 ~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 151 (329)
.++.++.++. .+|..+. ++++.|++++ +.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCS-CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccC-CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4455555554 3565444 5789999999 7888887788899999999999999998777788889999999999999
Q ss_pred cCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCccccc-ccccCC-ccCEEEeeCCcCccch
Q 020203 152 NLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIP-ASLGSM-DFNTIDLSRNKLEGDA 229 (329)
Q Consensus 152 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~l~~~-~L~~L~l~~n~l~~~~ 229 (329)
+++...+..|..+++|++|++++|.+....+..+..++ +|++|++++|...+.++ ..|..+ +|++|++++|.++...
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP-SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT-TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc-ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 99866666788999999999999999866666777887 89999999855444444 457777 8999999999988654
Q ss_pred hhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccC
Q 020203 230 SFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQ 307 (329)
Q Consensus 230 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~ 307 (329)
.+..+++|++|++++|.+++..+. +..+++|++|++++|++++..+..+..+++|+.|++++|++++..+. +..++
T Consensus 202 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 --NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp --CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred --ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 367888999999999999887554 77788999999999999988888888999999999999999875554 47788
Q ss_pred ccCcccccCCCCCCCCCC
Q 020203 308 SFGYTEYFHNRCLCGAPL 325 (329)
Q Consensus 308 ~L~~l~l~~n~~~~~~~~ 325 (329)
+|+.+++.+||+.|+|.+
T Consensus 280 ~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 280 HLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TCCEEECCSSCEECSSTT
T ss_pred CCCEEEcCCCCccCCCCc
Confidence 999999999999998743
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=5.5e-30 Score=237.37 Aligned_cols=246 Identities=17% Similarity=0.135 Sum_probs=194.7
Q ss_pred EEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCc
Q 020203 73 LTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNN 152 (329)
Q Consensus 73 l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 152 (329)
++.++.++. .+|..+. +++++|++++ +.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|+
T Consensus 59 v~c~~~~l~-~iP~~~~--~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 59 VVCTRRGLS-EVPQGIP--SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcC-ccCCCCC--CCccEEECcC-CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 344444543 3455443 5788899988 78888778888888999999999998887777888888999999999998
Q ss_pred CCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCccccc-ccccCC-ccCEEEeeCCcCccchh
Q 020203 153 LSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIP-ASLGSM-DFNTIDLSRNKLEGDAS 230 (329)
Q Consensus 153 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~l~~~-~L~~L~l~~n~l~~~~~ 230 (329)
+++..+..+..+++|++|++++|.+....+..+..++ +|++|++++|...+.++ ..|..+ +|++|++++|.+++..
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT-TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC-cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence 8866666688888999999999988855556777777 89999998854444444 356666 8899999999888753
Q ss_pred hhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccCc
Q 020203 231 FLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQS 308 (329)
Q Consensus 231 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~ 308 (329)
.+..+++|++|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|+.|++++|++++..+. +..+++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 467788899999999998877554 67778899999999999887788888899999999999999865554 367888
Q ss_pred cCcccccCCCCCCCCCC
Q 020203 309 FGYTEYFHNRCLCGAPL 325 (329)
Q Consensus 309 L~~l~l~~n~~~~~~~~ 325 (329)
|+.+++.+||+.|+|.+
T Consensus 292 L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 292 LVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CCEEECCSSCEECSTTT
T ss_pred CCEEEccCCCcCCCCCc
Confidence 99999999999888753
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.7e-29 Score=224.52 Aligned_cols=260 Identities=17% Similarity=0.219 Sum_probs=224.9
Q ss_pred CcCccceEecCC---------CCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEecc
Q 020203 55 CCDWYCVTCDLT---------TNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRIS 125 (329)
Q Consensus 55 ~c~~~gv~c~~~---------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls 125 (329)
.|.|+.+.|... ...++.+++++|.+.+..+..+..+++|++|++++ +.+++..|..+.++++|++|+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCC-CcCCeeCHHHhcCCCCCCEEECC
Confidence 367888888632 24688999999999987777899999999999999 88998889999999999999999
Q ss_pred CccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcc--cCChhhhhcCCCCCeEEcccCcCc
Q 020203 126 WTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTG--SIPESFGTFTGSIPDLYLSHNQLS 203 (329)
Q Consensus 126 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~l~~n~l~ 203 (329)
+|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+..+..++ +|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC-CcCEEECCCCccc
Confidence 99999 6676554 799999999999997777779999999999999999963 6678888888 9999999999998
Q ss_pred ccccccccCCccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecC-CCCCCCCCCEEEccCCcCccccchhhcC
Q 020203 204 GKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLS-KVEFPQSLTNLDLNHNKIFGSIPAQITS 282 (329)
Q Consensus 204 ~~~p~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 282 (329)
.+|..+. .+|++|++++|.+++..+..+..+++|++|++++|.+++..+ .+..+++|++|++++|+++ .+|..+..
T Consensus 185 -~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 185 -TIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -SCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -cCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 4665543 489999999999999988999999999999999999998776 4677889999999999998 88999999
Q ss_pred CCCCCEEEeecCcCcccCCCC-------CccCccCcccccCCCCCCC
Q 020203 283 LENLGFLNVSYNRLCGPIPVG-------GKLQSFGYTEYFHNRCLCG 322 (329)
Q Consensus 283 l~~L~~L~l~~n~l~~~~p~~-------~~l~~L~~l~l~~n~~~~~ 322 (329)
+++|++|++++|++++..+.. .....++.+++.+||..+.
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 999999999999998754432 1246788999999998653
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=9.1e-30 Score=237.44 Aligned_cols=240 Identities=17% Similarity=0.155 Sum_probs=180.0
Q ss_pred EEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCc
Q 020203 73 LTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNN 152 (329)
Q Consensus 73 l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 152 (329)
++.+++++. .+|..+. ++++.|++++ +.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|+
T Consensus 16 v~c~~~~l~-~ip~~~~--~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 16 VLCHRKRFV-AVPEGIP--TETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EECCSCCCS-SCCSCCC--TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcC-cCCCCCC--CCCcEEECCC-CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 445555554 3555443 5899999999 89999888899999999999999999998889999999999999999999
Q ss_pred CCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhh
Q 020203 153 LSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASF 231 (329)
Q Consensus 153 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~ 231 (329)
+++..+..|.++++|++|++++|.+.+..+..+..+. +|++|++++|.+.+..+..|..+ +|+.|++++|.+++..+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 9966666789999999999999999988888899998 99999999999998888888888 999999999999988877
Q ss_pred hccCCCCCCEEEccCccceeecCC-CCCCC------------------------CCCEEEccCCcCccccchhhcCCCCC
Q 020203 232 LFGLNKTTQRIDVSRNLLEFNLSK-VEFPQ------------------------SLTNLDLNHNKIFGSIPAQITSLENL 286 (329)
Q Consensus 232 ~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~------------------------~L~~L~l~~n~l~~~~p~~~~~l~~L 286 (329)
.+..+++|+.|++++|.+++..+. +..++ +|++|++++|++++..+..+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 788888888888888777654432 22222 34444444455443222344555555
Q ss_pred CEEEeecCcCcccCCC-CCccCccCcccccCC
Q 020203 287 GFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHN 317 (329)
Q Consensus 287 ~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n 317 (329)
+.|++++|++.+..+. +..+++|+.|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCC
Confidence 5555555555543332 233444444444444
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=2.1e-30 Score=248.63 Aligned_cols=253 Identities=18% Similarity=0.203 Sum_probs=159.3
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCccc-ccCCCCCCEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDF-ISQLTNLTFL 146 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L 146 (329)
.+++.+++++|.+. .+|..+..+++|++|++++ +.+.+..|..+.++++|++|++++|.+.+.++.. +..+++|++|
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSA-NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTT-CCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cCCCEEeccCCccC-CCChhhcccccCCEEECcc-CCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 35667777777665 4666666777777777776 5666555555566666666666666555444332 4445555555
Q ss_pred EccCCcCC--------------------------CCCCccCCCCCCCCEEecccccCcccCChh-hhhcCCCCCeEEccc
Q 020203 147 ELSFNNLS--------------------------GTIPGSLSKLQKLGALHLDRNKLTGSIPES-FGTFTGSIPDLYLSH 199 (329)
Q Consensus 147 ~l~~n~l~--------------------------~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~~L~~L~l~~ 199 (329)
++++|+++ +..|..+..+++|++|++++|.+.+..+.. +..++ +|++|++++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~ 434 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH-LLKVLNLSH 434 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT-TCCEEECTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc-cCCEEECCC
Confidence 55555544 344444444555555555555554333322 44444 555666666
Q ss_pred CcCcccccccccCC-ccCEEEeeCCcCccc---hhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCcc
Q 020203 200 NQLSGKIPASLGSM-DFNTIDLSRNKLEGD---ASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFG 274 (329)
Q Consensus 200 n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~ 274 (329)
|.+.+..|..+..+ +|++|++++|.+++. .+..+..+++|++|++++|.+++..+. +..+++|++|++++|++++
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 65555555555555 666666666666542 124466666777777777777665543 5666778888888888877
Q ss_pred ccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccCCCCCCCCC
Q 020203 275 SIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNRCLCGAP 324 (329)
Q Consensus 275 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~~~~~~~ 324 (329)
..|..+..+++| .|++++|++++.+|. +..+++|+.+++++||+.|+++
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 777777778888 888888888866665 3677889999999999999875
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.3e-29 Score=243.22 Aligned_cols=250 Identities=16% Similarity=0.064 Sum_probs=180.9
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
..++.+++++|.+.+..|..|.++++|++|++++ +.+.+..|..|.++++|++|++++|.+.+..|..++++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCC-CccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 4688899999999888788888899999999988 788887788888888888888888888877777888888888888
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccC--EEE-----
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFN--TID----- 219 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~--~L~----- 219 (329)
+++|++++..+..++.+++|++|++++|.+.+.....+..+. +|++|++++|.+++..+..++.+ +|+ .|+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE-KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT-TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCc-ccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 888888765566677777777777777777643222333344 66666666666654444444444 333 444
Q ss_pred ----------------------------------------------------------------------eeCCcCccch
Q 020203 220 ----------------------------------------------------------------------LSRNKLEGDA 229 (329)
Q Consensus 220 ----------------------------------------------------------------------l~~n~l~~~~ 229 (329)
+++|.+++..
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 4444444444
Q ss_pred hhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC--CCccC
Q 020203 230 SFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV--GGKLQ 307 (329)
Q Consensus 230 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~l~ 307 (329)
+..|+.+++|++|++++|.++..++.+..+++|++|++++|++.+..|..+..+++|++|++++|++.+.+|. +..++
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 4556777888888888888886555567778888888888888766677777778888888888877766654 46677
Q ss_pred ccCcccccCCCC
Q 020203 308 SFGYTEYFHNRC 319 (329)
Q Consensus 308 ~L~~l~l~~n~~ 319 (329)
+|+.+++++|..
T Consensus 351 ~L~~L~l~~n~l 362 (606)
T 3t6q_A 351 NLRELDLSHDDI 362 (606)
T ss_dssp TCCEEECCSSCC
T ss_pred cCCEEECCCCcc
Confidence 777777777654
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.3e-29 Score=222.89 Aligned_cols=248 Identities=19% Similarity=0.232 Sum_probs=213.7
Q ss_pred EEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCc--cCcccccCCCCCCEEEc
Q 020203 71 NSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISG--PVPDFISQLTNLTFLEL 148 (329)
Q Consensus 71 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l 148 (329)
+.++.++++++. +|..+. +++++|++++ +.++...+..|.++++|++|++++|.++. ..+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGIP--SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCccc-CCCCCC--CCCCEEECCC-CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 367888888754 565443 6899999999 78886555568999999999999999983 33667778999999999
Q ss_pred cCCcCCCCCCccCCCCCCCCEEecccccCcccCC-hhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCc
Q 020203 149 SFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIP-ESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLE 226 (329)
Q Consensus 149 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~ 226 (329)
++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..+. +|++|++++|.+.+..+..+..+ +|++|++++|.++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT-TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhcc-CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 999998 677789999999999999999985544 5678887 99999999999998888888887 9999999999998
Q ss_pred c-chhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-C
Q 020203 227 G-DASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-G 303 (329)
Q Consensus 227 ~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~ 303 (329)
+ ..+..+..+++|++|++++|.+++..+. +..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|. .
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 7 6788899999999999999999987554 77889999999999999977777889999999999999999998775 4
Q ss_pred Ccc-CccCcccccCCCCCCCCC
Q 020203 304 GKL-QSFGYTEYFHNRCLCGAP 324 (329)
Q Consensus 304 ~~l-~~L~~l~l~~n~~~~~~~ 324 (329)
..+ ++|+.+++++|+.-|++.
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGG
T ss_pred HhhhccCCEEEccCCCeecccC
Confidence 667 489999999999998864
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.5e-29 Score=220.26 Aligned_cols=249 Identities=18% Similarity=0.187 Sum_probs=202.2
Q ss_pred EEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccC
Q 020203 71 NSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSF 150 (329)
Q Consensus 71 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 150 (329)
+.++.+++++.. +|..+ .+++++|++++ +.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 566777777754 45433 46899999999 888887777889999999999999999977788899999999999999
Q ss_pred Cc-CCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccc
Q 020203 151 NN-LSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGD 228 (329)
Q Consensus 151 n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~ 228 (329)
|+ +....+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++..+..+..+ +|++|++++|.+++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 97 7766678899999999999999999877788888888 99999999999986666667777 899999999999988
Q ss_pred hhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCccC
Q 020203 229 ASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQ 307 (329)
Q Consensus 229 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~ 307 (329)
.+..+..+++|++|++++|.+++..+. +..+++|++|++++|++++..+..+..+++|+.|++++|++....+......
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~ 248 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHH
Confidence 888888999999999999999887554 6778899999999999997666778999999999999999886544322233
Q ss_pred ccCcccccCCCCCCCCC
Q 020203 308 SFGYTEYFHNRCLCGAP 324 (329)
Q Consensus 308 ~L~~l~l~~n~~~~~~~ 324 (329)
.++.+....+...|..|
T Consensus 249 ~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHHHCCSEECCCBEEES
T ss_pred HHHhcccccCccccCCc
Confidence 34444555555555433
No 22
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.97 E-value=4.7e-32 Score=239.23 Aligned_cols=264 Identities=20% Similarity=0.271 Sum_probs=216.5
Q ss_pred CCCCCCCCCCcCccceEecCCCCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCC-CCCChhhhc-------CCC
Q 020203 46 LASWNPKTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSL-TGPIQPAIA-------KLK 117 (329)
Q Consensus 46 ~~~w~~~~~~c~~~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l-~~~~~~~l~-------~l~ 117 (329)
...|.....|+.+..+.......+++.+++++|.+ .+|..+... |+.|++++ +.+ ...+|..+. +++
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~l~ 95 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKR-LTVRAARIPSRILFGALRVLGIS 95 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCE-EEEEEEECBHHHHHHHHHHHTTS
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--Hhhccccc-ccccCCCcCHHHHHHHHHhcCcC
Confidence 45676555666665544332335677778888888 667655544 88899998 677 455666665 799
Q ss_pred CCCEEeccCccCCccCcccc--cCCCCCCEEEccCCcCCCCCCccCCCC-----CCCCEEecccccCcccCChhhhhcCC
Q 020203 118 NLKTLRISWTNISGPVPDFI--SQLTNLTFLELSFNNLSGTIPGSLSKL-----QKLGALHLDRNKLTGSIPESFGTFTG 190 (329)
Q Consensus 118 ~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~ 190 (329)
+|++|++++|.+++.+|..+ ..+++|++|++++|++++. |..++.+ ++|++|++++|.+.+..+..+..++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~- 173 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP- 173 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS-
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC-
Confidence 99999999999999899876 8999999999999999966 7777766 8999999999999977778999998
Q ss_pred CCCeEEcccCcCccc--ccccc--cCC-ccCEEEeeCCcCccc---hhhhccCCCCCCEEEccCccceeecC--CCCCCC
Q 020203 191 SIPDLYLSHNQLSGK--IPASL--GSM-DFNTIDLSRNKLEGD---ASFLFGLNKTTQRIDVSRNLLEFNLS--KVEFPQ 260 (329)
Q Consensus 191 ~L~~L~l~~n~l~~~--~p~~l--~~~-~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~ 260 (329)
+|++|++++|++.+. .+..+ ..+ +|++|++++|.+++. ....+..+++|++|++++|.+++.++ .+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 999999999998765 34444 556 999999999999843 33556788999999999999998663 356678
Q ss_pred CCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCCCC
Q 020203 261 SLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCL 320 (329)
Q Consensus 261 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~ 320 (329)
+|++|++++|+++ .+|..+. ++|++|++++|++++. |....+++|+.+++++|+.-
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 9999999999998 7888776 8999999999999986 76889999999999999853
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.1e-29 Score=237.71 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=119.8
Q ss_pred CcCccceEecCC-----------CCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEe
Q 020203 55 CCDWYCVTCDLT-----------TNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLR 123 (329)
Q Consensus 55 ~c~~~gv~c~~~-----------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 123 (329)
.|.|.|+ |+.. ..+++.+++++|.+.+..|..+..+++|++|++++ +.+++..|..|.++++|++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS-SRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCC-CCcCccChhhccccccCCEEE
Confidence 4788887 7532 13688999999999888888899999999999999 788887778888999999999
Q ss_pred ccCccCCccCcccccCCCCCCEEEccCCcCCC-CCCccCCCCCCCCEEecccccCcccCC-hhhhhcCCCCCeEEcccCc
Q 020203 124 ISWTNISGPVPDFISQLTNLTFLELSFNNLSG-TIPGSLSKLQKLGALHLDRNKLTGSIP-ESFGTFTGSIPDLYLSHNQ 201 (329)
Q Consensus 124 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~ 201 (329)
+++|.+.+..+..++++++|++|++++|++++ ..|..++++++|++|++++|.+.+.+| ..+..++ +|++|++++|.
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~ 159 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT-SLNELEIKALS 159 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETT
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc-ccCeeeccCCc
Confidence 99999987767678889999999999998875 356677888888888888887443444 4566666 67777777777
Q ss_pred Cccccccccc
Q 020203 202 LSGKIPASLG 211 (329)
Q Consensus 202 l~~~~p~~l~ 211 (329)
+++..|..+.
T Consensus 160 l~~~~~~~l~ 169 (549)
T 2z81_A 160 LRNYQSQSLK 169 (549)
T ss_dssp CCEECTTTTT
T ss_pred ccccChhhhh
Confidence 7665555443
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.5e-29 Score=224.73 Aligned_cols=223 Identities=17% Similarity=0.226 Sum_probs=202.9
Q ss_pred CCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCE
Q 020203 90 DLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGA 169 (329)
Q Consensus 90 ~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 169 (329)
..++++.|++++ +.++ .+|+.+.++++|++|++++|.+. .+|..++.+++|++|++++|+++ .+|..++.+++|++
T Consensus 79 ~~~~l~~L~L~~-n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRS-VPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEES-SCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cccceeEEEccC-CCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 357899999999 7887 57888999999999999999999 89999999999999999999999 88999999999999
Q ss_pred EecccccCcccCChhhhh---------cCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCC
Q 020203 170 LHLDRNKLTGSIPESFGT---------FTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTT 239 (329)
Q Consensus 170 L~l~~n~l~~~~~~~~~~---------~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L 239 (329)
|++++|.+.+.+|..+.. +. +|++|++++|.++ .+|..+..+ +|++|++++|.+++.++ .+..+++|
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L 231 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLV-NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKL 231 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEEST-TCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTC
T ss_pred EECCCCCCccccChhHhhccchhhhccCC-CCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCch-hhccCCCC
Confidence 999999888899987765 77 9999999999999 788888888 99999999999997554 58899999
Q ss_pred CEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccCC
Q 020203 240 QRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHN 317 (329)
Q Consensus 240 ~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n 317 (329)
++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|. ++++++|+.+++..+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9999999999887765 77889999999999999999999999999999999999999999997 488999999988866
Q ss_pred CC
Q 020203 318 RC 319 (329)
Q Consensus 318 ~~ 319 (329)
..
T Consensus 312 ~~ 313 (328)
T 4fcg_A 312 LQ 313 (328)
T ss_dssp GS
T ss_pred HH
Confidence 43
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.5e-28 Score=236.52 Aligned_cols=133 Identities=22% Similarity=0.215 Sum_probs=109.9
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
..++.||+++|.+++..+.+|.++++|++|++++ |.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCC-CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 4689999999999988778999999999999999 788887778899999999999999999966667788999999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcc-cCChhhhhcCCCCCeEEcccCcC
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTG-SIPESFGTFTGSIPDLYLSHNQL 202 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~l~~n~l 202 (329)
+++|++++..+..|+++++|++|++++|.+.+ ..|..+..+. +|++|++++|.+
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l 185 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKI 185 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch-hhhhhcccCccc
Confidence 99999886666678888888888888888764 3456666666 666666666544
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7.1e-29 Score=220.76 Aligned_cols=257 Identities=20% Similarity=0.286 Sum_probs=220.1
Q ss_pred cCccceEecCC---------CCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccC
Q 020203 56 CDWYCVTCDLT---------TNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISW 126 (329)
Q Consensus 56 c~~~gv~c~~~---------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~ 126 (329)
|.|..+.|... ..+++.+++++|.+.+..+..+..+++|++|++++ +.+++..|..|.++++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-NKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC-CccCccCHhHhhCcCCCCEEECCC
Confidence 77888888632 24689999999999988888999999999999999 889988899999999999999999
Q ss_pred ccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcc--cCChhhhhcCCCCCeEEcccCcCcc
Q 020203 127 TNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTG--SIPESFGTFTGSIPDLYLSHNQLSG 204 (329)
Q Consensus 127 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~l~~n~l~~ 204 (329)
|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|.+++
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLTG 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCSS
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCCc
Confidence 9999 6776555 899999999999997666779999999999999999963 556666555 79999999999985
Q ss_pred cccccccCCccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCC
Q 020203 205 KIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSL 283 (329)
Q Consensus 205 ~~p~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l 283 (329)
+|..+. .+|++|++++|.+++..+..+..+++|++|++++|.+++..+. +..+++|++|++++|+++ .+|..+..+
T Consensus 187 -l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 187 -IPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp -CCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred -cCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 666544 3899999999999998888899999999999999999987664 677889999999999998 889889999
Q ss_pred CCCCEEEeecCcCcccCCCC-C------ccCccCcccccCCCCCC
Q 020203 284 ENLGFLNVSYNRLCGPIPVG-G------KLQSFGYTEYFHNRCLC 321 (329)
Q Consensus 284 ~~L~~L~l~~n~l~~~~p~~-~------~l~~L~~l~l~~n~~~~ 321 (329)
++|+.|++++|++++..+.. . ....|+.+++.+||..+
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 99999999999998754432 2 14678999999999764
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.5e-29 Score=242.70 Aligned_cols=249 Identities=20% Similarity=0.254 Sum_probs=213.1
Q ss_pred cEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCcc--CcccccCCCCCCEE
Q 020203 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGP--VPDFISQLTNLTFL 146 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L 146 (329)
+++.+++++|.+ +.+| .+ .+++|++|++++ +...+.+ .+..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 308 ~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~-n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTM-NKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCSEEEEESCCC-SSCC-CC-CCSSCCEEEEES-CSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred cCCEEEcccccC-cccc-cC-CCCccceeeccC-CcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence 566777777777 5666 45 777888888877 4333333 567889999999999988855 47788899999999
Q ss_pred EccCCcCCCCCCccCCCCCCCCEEecccccCcccCC-hhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCc
Q 020203 147 ELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIP-ESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNK 224 (329)
Q Consensus 147 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~ 224 (329)
++++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..|..+..+ +|++|++++|.
T Consensus 382 ~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE-KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp ECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred ECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccc-cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 99999988 567889999999999999999997777 6788888 99999999999998888888888 99999999999
Q ss_pred Ccc-chhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC
Q 020203 225 LEG-DASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV 302 (329)
Q Consensus 225 l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 302 (329)
+++ ..+..++.+++|++|++++|.+++.++. +..+++|++|++++|++++..|..+..+++|+.|++++|+++...+.
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 998 4788899999999999999999988765 77889999999999999988899999999999999999999954444
Q ss_pred CCccC-ccCcccccCCCCCCCCCC
Q 020203 303 GGKLQ-SFGYTEYFHNRCLCGAPL 325 (329)
Q Consensus 303 ~~~l~-~L~~l~l~~n~~~~~~~~ 325 (329)
...++ +|+.+++.+||+.|+++.
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCCSSTT
T ss_pred HhhhcccCcEEEccCCCcccCCcc
Confidence 57776 699999999999998765
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1e-28 Score=228.81 Aligned_cols=234 Identities=19% Similarity=0.213 Sum_probs=189.3
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhh--hcCCCCCCEEeccCccCCccCccc-ccCCCCCC
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPA--IAKLKNLKTLRISWTNISGPVPDF-ISQLTNLT 144 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~ 144 (329)
.+++.+++++|.+.+..|..+..+++|++|++++ +.+++..+.. +.++++|++|++++|.+.+..|.. +..+++|+
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ-CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT-SCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCC-CCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 4677888888888777777888888888888888 6777655554 778888888888888888666665 77888888
Q ss_pred EEEccCCcCCCCCCccCCCC----------------------------------CCCCEEec------------------
Q 020203 145 FLELSFNNLSGTIPGSLSKL----------------------------------QKLGALHL------------------ 172 (329)
Q Consensus 145 ~L~l~~n~l~~~~p~~l~~l----------------------------------~~L~~L~l------------------ 172 (329)
+|++++|++++..+..+..+ ++|++|++
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 88888888876655444322 33444444
Q ss_pred ---------------------------------------------ccccCcccCChhhhhcCCCCCeEEcccCcCccccc
Q 020203 173 ---------------------------------------------DRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIP 207 (329)
Q Consensus 173 ---------------------------------------------~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 207 (329)
++|.+.+..|..+..++ +|++|++++|.+++..|
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccCh
Confidence 44444444566677777 89999999999998888
Q ss_pred ccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCC
Q 020203 208 ASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLEN 285 (329)
Q Consensus 208 ~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~ 285 (329)
..+..+ +|++|++++|.+++..+..++.+++|++|++++|.+++..+. +..+++|++|++++|++++..+..+..+++
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc
Confidence 888888 999999999999999899999999999999999999988664 788899999999999999766667889999
Q ss_pred CCEEEeecCcCcccCCCC
Q 020203 286 LGFLNVSYNRLCGPIPVG 303 (329)
Q Consensus 286 L~~L~l~~n~l~~~~p~~ 303 (329)
|++|++++|++++..|..
T Consensus 397 L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 397 LQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CCEEECCSSCBCCCTTTT
T ss_pred ccEEEccCCCcccCCCcc
Confidence 999999999999998864
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=7.4e-29 Score=240.99 Aligned_cols=257 Identities=18% Similarity=0.182 Sum_probs=190.2
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCC---------------------------CCCCCCChhhhcCCCCCC
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKL---------------------------PSLTGPIQPAIAKLKNLK 120 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~---------------------------~~l~~~~~~~l~~l~~L~ 120 (329)
..++.+++++|.+.+..+..+..+++|++|+++++ +.+++..|..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 45777888888887776777777777777777652 233333455566666666
Q ss_pred EEeccCccCCccCc-ccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCc--ccCChhhhhcCCCCCeEEc
Q 020203 121 TLRISWTNISGPVP-DFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLT--GSIPESFGTFTGSIPDLYL 197 (329)
Q Consensus 121 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~~L~~L~l 197 (329)
+|++++|.+.+.+| ..+.++++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+..+. +|++|++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~-~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR-NLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT-TCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC-CCCEEEC
Confidence 66666666665444 45666666777777776666555666667777777777777665 45677777777 8888888
Q ss_pred ccCcCcccccccccCC-ccCEEEeeCCcCccchh--------hhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEc
Q 020203 198 SHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDAS--------FLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDL 267 (329)
Q Consensus 198 ~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l 267 (329)
++|++++..+..+..+ +|++|++++|.+++..+ ..+..+++|++|++++|.++..++. +..+++|++|++
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 8888887666667777 88888998888876532 2367788899999999988855543 677889999999
Q ss_pred cCCcCccccchhhcCCCCCCEEEeecCcCcccCCCC-C-ccCccCcccccCCCCCCCCCC
Q 020203 268 NHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVG-G-KLQSFGYTEYFHNRCLCGAPL 325 (329)
Q Consensus 268 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~-~l~~L~~l~l~~n~~~~~~~~ 325 (329)
++|++++..+..+..+++|+.|++++|++++..|.. . .+++|+.+++++||+.|+|+.
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999998655666788899999999999998766543 3 688999999999999999864
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.2e-28 Score=228.29 Aligned_cols=226 Identities=18% Similarity=0.151 Sum_probs=201.4
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.|++++|++.+..+..|.++++|++|++++ +.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCC-CccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 4789999999999999899999999999999999 899988888999999999999999999976667799999999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCC-hhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcC
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIP-ESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKL 225 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l 225 (329)
+++|+++...+..|..+++|++|++++|...+.++ ..+..+. +|++|++++|.+++ +| .+..+ +|++|++++|.+
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECCCCcccc-cc-cccccccccEEECcCCcC
Confidence 99999996666789999999999999954333554 4677787 99999999999985 45 46666 999999999999
Q ss_pred ccchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCc
Q 020203 226 EGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLC 297 (329)
Q Consensus 226 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 297 (329)
++..+..|..+++|++|++++|.+++..+. +..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 999999999999999999999999987665 677899999999999999777777889999999999999864
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=244.28 Aligned_cols=259 Identities=24% Similarity=0.241 Sum_probs=172.2
Q ss_pred cCccceEecCCCCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCC-hhhhcCCCCCCEEeccCccCCccCc
Q 020203 56 CDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPI-QPAIAKLKNLKTLRISWTNISGPVP 134 (329)
Q Consensus 56 c~~~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~ 134 (329)
|.|..|.+ ...+++.|++++|.+.+..+..|.++++|++|++++ +...+.+ |.+|.++++|++|++++|.+.+..|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~-n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS-QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECT-TCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCC-CCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 34555555 346788999999999888888888999999999988 5444444 6778888888888888888887778
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCcc--CCCCCCCCEEecccccCcccCC-hhhhhcCCCCCeEEcccCcCccccccccc
Q 020203 135 DFISQLTNLTFLELSFNNLSGTIPGS--LSKLQKLGALHLDRNKLTGSIP-ESFGTFTGSIPDLYLSHNQLSGKIPASLG 211 (329)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~l~ 211 (329)
..|.++++|++|++++|++++.+|.. ++++++|++|++++|.+.+..+ ..+.+++ +|++|++++|.+++..+..+.
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~-~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN-SLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS-SCCEEEEESSCCCCCCSGGGH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC-CCCEEECCCCcCCeeCHHHcc
Confidence 88888888888888888888766554 7888888888888888875544 4677777 788888888877654443332
Q ss_pred CC---------------------------------ccCEEEeeCCcCccchhhhcc------------------------
Q 020203 212 SM---------------------------------DFNTIDLSRNKLEGDASFLFG------------------------ 234 (329)
Q Consensus 212 ~~---------------------------------~L~~L~l~~n~l~~~~~~~~~------------------------ 234 (329)
.+ .|+.|++++|.+++..+..+.
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 11 256666666654433221111
Q ss_pred ------------C--CCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCccc
Q 020203 235 ------------L--NKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGP 299 (329)
Q Consensus 235 ------------~--~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 299 (329)
+ .++|++|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|++.+.
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 1 14566666666666554433 44555666666666666555555555666666666666665554
Q ss_pred CCC-CCccCccCcccccCCC
Q 020203 300 IPV-GGKLQSFGYTEYFHNR 318 (329)
Q Consensus 300 ~p~-~~~l~~L~~l~l~~n~ 318 (329)
.|. +..+++|+.+++++|.
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCC
T ss_pred CHHHhcCCCCCCEEECCCCC
Confidence 332 3455555555555553
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.9e-28 Score=223.48 Aligned_cols=226 Identities=20% Similarity=0.182 Sum_probs=201.5
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
..++.+++++|.+.+..+..|.++++|++|++++ +.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS-SCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC-CcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4678999999999998889999999999999999 889988888999999999999999999966666899999999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCC-hhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcC
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIP-ESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKL 225 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l 225 (329)
+++|+++...+..|..+++|++|++++|...+.++ ..+..+. +|++|++++|.++ .+| .+..+ +|++|++++|.+
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-SCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-ccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence 99999997667789999999999999954433444 4677887 9999999999998 456 36666 999999999999
Q ss_pred ccchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCc
Q 020203 226 EGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLC 297 (329)
Q Consensus 226 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 297 (329)
++..+..|..+++|++|++++|.+++..+. +..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 999999999999999999999999987665 678899999999999999777778899999999999999874
No 33
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.7e-28 Score=213.58 Aligned_cols=226 Identities=19% Similarity=0.157 Sum_probs=200.2
Q ss_pred CEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEeccc
Q 020203 95 ETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDR 174 (329)
Q Consensus 95 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 174 (329)
+.++.++ +.++. +|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 14 ~~~~c~~-~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQ-QGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCS-SCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCc-CCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 5677777 66665 45433 57999999999999977777899999999999999999977788999999999999999
Q ss_pred cc-CcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceee
Q 020203 175 NK-LTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFN 252 (329)
Q Consensus 175 n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 252 (329)
|. +....+..+..+. +|++|++++|.+++..+..+..+ +|++|++++|.+++..+..++.+++|++|++++|.+++.
T Consensus 90 n~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCc-CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 97 7755578888888 99999999999998778888888 999999999999998888899999999999999999987
Q ss_pred cCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccCCCCCCCCCC
Q 020203 253 LSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNRCLCGAPL 325 (329)
Q Consensus 253 ~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~~~~~~~~ 325 (329)
.+. +..+++|++|++++|++++..|..+..+++|+.|++++|++++..+. +..+++|+.+++++|++.|+++.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 765 77889999999999999988899999999999999999999985554 58899999999999999998754
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.8e-28 Score=231.94 Aligned_cols=133 Identities=26% Similarity=0.333 Sum_probs=102.1
Q ss_pred CCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccc--hhhhccCCCCCCEEEccCccceeecCC--CCCC------
Q 020203 191 SIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGD--ASFLFGLNKTTQRIDVSRNLLEFNLSK--VEFP------ 259 (329)
Q Consensus 191 ~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~------ 259 (329)
+|++|++++|.+++..|..+..+ +|++|++++|.+++. .+..+..+++|++|++++|.+++.++. +..+
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 78888888888887777777777 888888888888764 345677778888888888877762221 2211
Q ss_pred ----------------CCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccCCCCCCC
Q 020203 260 ----------------QSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNRCLCG 322 (329)
Q Consensus 260 ----------------~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~~~~~ 322 (329)
++|++|++++|+++ .+|..+..+++|+.|++++|++++..+. +..+++|+.+++++|++.|+
T Consensus 434 ~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp ECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred ECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 57778888888777 6777777889999999999999953333 68899999999999999998
Q ss_pred CC
Q 020203 323 AP 324 (329)
Q Consensus 323 ~~ 324 (329)
|+
T Consensus 513 c~ 514 (562)
T 3a79_B 513 CP 514 (562)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.2e-27 Score=212.54 Aligned_cols=250 Identities=19% Similarity=0.227 Sum_probs=210.9
Q ss_pred CCcCccceEecCCCCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccC
Q 020203 54 DCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPV 133 (329)
Q Consensus 54 ~~c~~~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 133 (329)
..|.+.. .| +++.++++++.+. .+|..+. +.++.|++++ +.+++..+..|.++++|++|++++|.+++..
T Consensus 23 ~~cp~~c-~c-----~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (330)
T 1xku_A 23 PVCPFRC-QC-----HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKIS 92 (330)
T ss_dssp CCCCTTC-EE-----ETTEEECTTSCCC-SCCCSCC--TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCCCBC
T ss_pred CCCCCCC-cC-----CCeEEEecCCCcc-ccCccCC--CCCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCcCCeeC
Confidence 4566543 34 3567889888876 3565553 6899999999 8899877778999999999999999999887
Q ss_pred cccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcc--ccccccc
Q 020203 134 PDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSG--KIPASLG 211 (329)
Q Consensus 134 ~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~l~ 211 (329)
|..+..+++|++|++++|+++ .+|..+. ++|++|++++|.+.+..+..+..+. +|++|++++|.+.. ..+..+.
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~ 168 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQ 168 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT-TCCEEECCSSCCCGGGBCTTGGG
T ss_pred HHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCc-cccEEECCCCcCCccCcChhhcc
Confidence 999999999999999999998 6676654 7999999999999977777788888 99999999999963 5667787
Q ss_pred CC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEE
Q 020203 212 SM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFL 289 (329)
Q Consensus 212 ~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 289 (329)
.+ +|++|++++|.++..+... .++|++|++++|.+++..+. +..+++|++|++++|++++..+..+..+++|++|
T Consensus 169 ~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 169 GMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp GCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred CCCCcCEEECCCCccccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence 77 9999999999998754433 27899999999999987554 7788999999999999998777789999999999
Q ss_pred EeecCcCcccCCCCCccCccCcccccCCCCC
Q 020203 290 NVSYNRLCGPIPVGGKLQSFGYTEYFHNRCL 320 (329)
Q Consensus 290 ~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~ 320 (329)
++++|+++........+++|+.+++++|+.-
T Consensus 246 ~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 246 HLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp ECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred ECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence 9999999943344688999999999999753
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=3e-28 Score=236.73 Aligned_cols=247 Identities=19% Similarity=0.170 Sum_probs=191.9
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|.+.+..+..|..+++|++|++++ +.+++..|..++++++|++|++++|.+.+..+..|..+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCS-SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCC-CccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 5789999999999887777899999999999999 789988888999999999999999999955445789999999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccC--C-ccCEEEeeCCc
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGS--M-DFNTIDLSRNK 224 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~--~-~L~~L~l~~n~ 224 (329)
+++|++++..|..|+++++|++|++++|.+.+..+..+..+. +|++|++++|.+++..+..+.. . +|+.|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE-NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT-TCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccc-cCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 999999877778899999999999999999888788888887 8999999999988766665542 2 78999999988
Q ss_pred CccchhhhccCC---------------------------CCCCEEEccCccceeecCC-CCCCC--CCCEEEccCCcCcc
Q 020203 225 LEGDASFLFGLN---------------------------KTTQRIDVSRNLLEFNLSK-VEFPQ--SLTNLDLNHNKIFG 274 (329)
Q Consensus 225 l~~~~~~~~~~~---------------------------~~L~~L~l~~n~l~~~~~~-~~~~~--~L~~L~l~~n~l~~ 274 (329)
+++..+..+..+ ++|++|++++|.+++..+. +..++ +|++|++++|++++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 887766555433 4566666667766665443 33332 37777777777776
Q ss_pred ccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccC
Q 020203 275 SIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFH 316 (329)
Q Consensus 275 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~ 316 (329)
..|..++.+++|++|++++|++.+..|. +..+++|+.+++.+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 6666777777777777777777765553 34445555555443
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.2e-28 Score=237.54 Aligned_cols=244 Identities=18% Similarity=0.243 Sum_probs=173.4
Q ss_pred cEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCC-CCEEeccCccCCccCcccccCCC--CCCE
Q 020203 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKN-LKTLRISWTNISGPVPDFISQLT--NLTF 145 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~--~L~~ 145 (329)
+++.+++++|.+.|.+| .+..+++|++|++++ +.++ .+|..+.++++ |++|++++|.++ .+|..+..+. +|++
T Consensus 331 ~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~-N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY-NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406 (636)
T ss_dssp TCCEEECCSCCCEEECC-CCEEEEEESEEECCS-SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred CCCEEeCcCCcCccchh-hhCCCCCCCEEECCC-Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence 44555555555555555 555555555555555 4444 45555666666 777777777666 5666555543 6777
Q ss_pred EEccCCcCCCCCCccCC-------CCCCCCEEecccccCcccCChhhhh-cCCCCCeEEcccCcCcccccccc-cCC---
Q 020203 146 LELSFNNLSGTIPGSLS-------KLQKLGALHLDRNKLTGSIPESFGT-FTGSIPDLYLSHNQLSGKIPASL-GSM--- 213 (329)
Q Consensus 146 L~l~~n~l~~~~p~~l~-------~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~l-~~~--- 213 (329)
|++++|++++.+|..+. .+++|++|++++|.++ .+|..+.. ++ +|++|++++|.++ .+|..+ ...
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~-~L~~L~Ls~N~l~-~i~~~~~~~~~~~ 483 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGS-PLSSINLMGNMLT-EIPKNSLKDENEN 483 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTC-CCSEEECCSSCCS-BCCSSSSEETTEE
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCC-CCCEEECCCCCCC-CcCHHHhcccccc
Confidence 77777777766666666 6667888888888877 56655544 55 8888888888888 555433 222
Q ss_pred -----ccCEEEeeCCcCccchhhhcc--CCCCCCEEEccCccceeecCCCCCCCCCCEEEc------cCCcCccccchhh
Q 020203 214 -----DFNTIDLSRNKLEGDASFLFG--LNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDL------NHNKIFGSIPAQI 280 (329)
Q Consensus 214 -----~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l------~~n~l~~~~p~~~ 280 (329)
+|++|++++|.++. +|..+. .+++|++|++++|.+++.+..+..+++|++|++ ++|++.+.+|..+
T Consensus 484 ~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp CTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred ccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 68889999998884 445554 888999999999999875445677889999999 5677888889899
Q ss_pred cCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCCCCCC
Q 020203 281 TSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCG 322 (329)
Q Consensus 281 ~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~~~ 322 (329)
..+++|+.|++++|++ +.+|... .++|+.+++++|+..|-
T Consensus 563 ~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNISI 602 (636)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCEE
T ss_pred hcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCccc
Confidence 9999999999999999 6777642 27899999999987763
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=5.7e-28 Score=231.72 Aligned_cols=179 Identities=17% Similarity=0.147 Sum_probs=150.4
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|.+.+..+..|.++++|++|++++ +.+++..|..|.++++|++|++++|.+.+..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSR-CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCC-CcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 5789999999999998888999999999999999 789988888999999999999999999988899999999999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcc-cCChhhhhcCCCCCeEEcccCcCcccccccccCC-c----cCEEEee
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTG-SIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-D----FNTIDLS 221 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~----L~~L~l~ 221 (329)
+++|++++..+..++++++|++|++++|.+.+ .+|..+.+++ +|++|++++|.+++..+..++.+ + +.+|+++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT-TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC-CCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 99999997777889999999999999999985 5799999998 99999999999997767666555 3 3467777
Q ss_pred CCcCccchhhhccCCCCCCEEEccCccc
Q 020203 222 RNKLEGDASFLFGLNKTTQRIDVSRNLL 249 (329)
Q Consensus 222 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l 249 (329)
+|.+++..+..+... +|++|++++|.+
T Consensus 190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~ 216 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGI-KLHELTLRGNFN 216 (606)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCS
T ss_pred CCCcceeCcccccCc-eeeeeeccCCcc
Confidence 777766555544433 555666555543
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=7.1e-28 Score=214.29 Aligned_cols=239 Identities=21% Similarity=0.230 Sum_probs=206.7
Q ss_pred EEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEcc
Q 020203 70 INSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELS 149 (329)
Q Consensus 70 v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 149 (329)
++.++++++++. .+|..+. +++++|++++ +.+++..+..|.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 567889998886 5676553 6899999999 88888778889999999999999999998889999999999999999
Q ss_pred CCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcc--cccccccCCccCEEEeeCCcCcc
Q 020203 150 FNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSG--KIPASLGSMDFNTIDLSRNKLEG 227 (329)
Q Consensus 150 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~l~~~~L~~L~l~~n~l~~ 227 (329)
+|+++ .+|..+. ++|++|++++|.+.+..+..+..++ +|++|++++|.++. ..+..+..++|+.|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLR-NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCS-SCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCc-cCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence 99998 6776655 8999999999999966566688888 99999999999963 56777777799999999999988
Q ss_pred chhhhccCCCCCCEEEccCccceeecC-CCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCc
Q 020203 228 DASFLFGLNKTTQRIDVSRNLLEFNLS-KVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGK 305 (329)
Q Consensus 228 ~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~ 305 (329)
.+... .++|++|++++|.+++..+ .+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|. ...
T Consensus 187 l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp CCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred cCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 55433 2789999999999998764 4778899999999999999877788999999999999999999 5555 688
Q ss_pred cCccCcccccCCCCC
Q 020203 306 LQSFGYTEYFHNRCL 320 (329)
Q Consensus 306 l~~L~~l~l~~n~~~ 320 (329)
+++|+.+++++|+.-
T Consensus 263 l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 263 LKLLQVVYLHTNNIT 277 (332)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CccCCEEECCCCCCC
Confidence 999999999999754
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=230.58 Aligned_cols=158 Identities=30% Similarity=0.392 Sum_probs=101.5
Q ss_pred CCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcc--cccccccCC-ccCEEEeeCCcCcc-chhhhccCCCC
Q 020203 163 KLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSG--KIPASLGSM-DFNTIDLSRNKLEG-DASFLFGLNKT 238 (329)
Q Consensus 163 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~l~~~-~L~~L~l~~n~l~~-~~~~~~~~~~~ 238 (329)
.+++|++|++++|.+++.+|..+..++ +|++|++++|++++ .+|..+..+ +|++|++++|.+++ .+...+..+++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hCCcccEEEeECCccChhhhhhhccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 344555555555555544555555554 55555555555553 233444444 55555555555555 22233455555
Q ss_pred CCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC--CCccCccCcccccC
Q 020203 239 TQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV--GGKLQSFGYTEYFH 316 (329)
Q Consensus 239 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~l~~L~~l~l~~ 316 (329)
|++|++++|.+++..+. ..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|. +..+++|+.+++++
T Consensus 401 L~~L~Ls~N~l~~~~~~-~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGG-SCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCcchhh-hhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcC
Confidence 55555555555443322 11267888888888888 788888899999999999999995 554 57899999999999
Q ss_pred CCCCCCCC
Q 020203 317 NRCLCGAP 324 (329)
Q Consensus 317 n~~~~~~~ 324 (329)
|+..|+++
T Consensus 478 N~~~c~c~ 485 (520)
T 2z7x_B 478 NPWDCSCP 485 (520)
T ss_dssp SCBCCCHH
T ss_pred CCCcccCC
Confidence 99999864
No 41
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3.8e-28 Score=239.13 Aligned_cols=242 Identities=24% Similarity=0.369 Sum_probs=188.4
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCC-CCC-CChhhhcCCC-------CCCEEeccCccCCccCcc--c
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPS-LTG-PIQPAIAKLK-------NLKTLRISWTNISGPVPD--F 136 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~-l~~-~~~~~l~~l~-------~L~~L~Ls~n~l~~~~~~--~ 136 (329)
.+++.|++++|.+.+.+|..+.++++|+.|++++ |. +++ .+|..+++++ +|++|++++|.+. .+|. .
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~-N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC-NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT-CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcC-CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 5689999999999999999999999999999999 66 888 7888776665 9999999999999 8888 8
Q ss_pred ccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCC-CCeEEcccCcCcccccccccCC--
Q 020203 137 ISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGS-IPDLYLSHNQLSGKIPASLGSM-- 213 (329)
Q Consensus 137 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~p~~l~~~-- 213 (329)
+..+++|+.|++++|+++ .+| .++.+++|+.|++++|.+. .+|..+..+. + |++|++++|.++ .+|..+...
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFT-DQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEEC-TTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhcc-ccCCEEECcCCCCC-cCchhhhcccc
Confidence 999999999999999998 888 8888999999999999988 8888888887 6 888888888877 566555443
Q ss_pred -ccCEEEeeCCcC-----------------------------ccchhhhccCCCCCCEEEccCccceeecCCCCC-----
Q 020203 214 -DFNTIDLSRNKL-----------------------------EGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEF----- 258 (329)
Q Consensus 214 -~L~~L~l~~n~l-----------------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----- 258 (329)
+|+.|++++|.+ +..+...+..+++|+.|++++|.++..++....
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence 245555555444 433334445677888888888887743333221
Q ss_pred ---CCCCCEEEccCCcCccccchhhc--CCCCCCEEEeecCcCcccCCC-CCccCccCcccccCCC
Q 020203 259 ---PQSLTNLDLNHNKIFGSIPAQIT--SLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNR 318 (329)
Q Consensus 259 ---~~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~ 318 (329)
+++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|. ...+++|+.|++++|+
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 127888888888887 6777776 78888888888888887 443 4677778888777654
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=241.56 Aligned_cols=251 Identities=21% Similarity=0.217 Sum_probs=198.6
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
..++.+++++|.+.+..+..+..+++|+.|++++ +.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEES-CCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCC-CcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 4688999999999888888899999999999999 888888888899999999999999999877788899999999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCCh-----------------------------------------hhh
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPE-----------------------------------------SFG 186 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-----------------------------------------~~~ 186 (329)
+++|++.+..+..+..+++|++|++++|.+++ ++. .+.
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~ 423 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHT
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhh
Confidence 99999987777788889999999999888763 211 122
Q ss_pred hcCCCCCeEEcccCcCccccccc-ccCC-ccCEEEeeCCcCc-----cchhhhccCCCCCCEEEccCccceeecCC-CCC
Q 020203 187 TFTGSIPDLYLSHNQLSGKIPAS-LGSM-DFNTIDLSRNKLE-----GDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEF 258 (329)
Q Consensus 187 ~~~~~L~~L~l~~n~l~~~~p~~-l~~~-~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~ 258 (329)
.++ +|++|++++|++++..+.. +... +|+.|++++|.++ +..+..|..+++|++|++++|.+++.++. +..
T Consensus 424 ~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 424 RVP-HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp TCT-TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred cCC-ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence 344 6666666666666433221 2223 6777777777765 33345677788888889998888877665 577
Q ss_pred CCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCCCCCCCCC
Q 020203 259 PQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPL 325 (329)
Q Consensus 259 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~~~~~~ 325 (329)
+++|++|++++|++++..|..+. ++|+.|++++|++++.+|.. +.+|+.+++.+||+.|+|+.
T Consensus 503 l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 503 LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 88999999999999865555544 78999999999999887753 56899999999999998764
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.8e-28 Score=228.81 Aligned_cols=244 Identities=18% Similarity=0.153 Sum_probs=158.2
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|.+.+..|..+..+++|++|++++ +.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISH-NRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCS-SCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCC-CccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 4678888888888776666788888888888888 7777777778888888888888888887 56655 778888888
Q ss_pred ccCCcCCC-CCCccCCCCCCCCEEecccccCcccCChhhhhcC-------------------------------------
Q 020203 148 LSFNNLSG-TIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFT------------------------------------- 189 (329)
Q Consensus 148 l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~------------------------------------- 189 (329)
+++|++++ .+|..++.+++|++|++++|.+.+ ..+..+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 88888876 466778888888888887777653 1222222
Q ss_pred -------------------------------------------------------------------------CCCCeEE
Q 020203 190 -------------------------------------------------------------------------GSIPDLY 196 (329)
Q Consensus 190 -------------------------------------------------------------------------~~L~~L~ 196 (329)
.+|++|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 0344444
Q ss_pred cccCcCcccccccc-----cCC-ccCEEEeeCCcCccchhhh-------------------------ccCCCCCCEEEcc
Q 020203 197 LSHNQLSGKIPASL-----GSM-DFNTIDLSRNKLEGDASFL-------------------------FGLNKTTQRIDVS 245 (329)
Q Consensus 197 l~~n~l~~~~p~~l-----~~~-~L~~L~l~~n~l~~~~~~~-------------------------~~~~~~L~~L~l~ 245 (329)
+++|.++|.+|..+ +.+ .|+.+++++|.+ ..+... +..+++|++|+++
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred eecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 44444444444443 222 222222222222 000000 1456677777777
Q ss_pred CccceeecC-CCCCCCCCCEEEccCCcCcc--ccchhhcCCCCCCEEEeecCcCcccCCC--CCccCccCcccccCCCC
Q 020203 246 RNLLEFNLS-KVEFPQSLTNLDLNHNKIFG--SIPAQITSLENLGFLNVSYNRLCGPIPV--GGKLQSFGYTEYFHNRC 319 (329)
Q Consensus 246 ~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~l~~L~~l~l~~n~~ 319 (329)
+|.+++..+ .+..+++|++|++++|++++ .+|..++.+++|++|++++|++.+.+|. +..+++|+.+++++|..
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 777776433 35666777777777777775 4556677777777777777777765553 35566666666666653
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2e-27 Score=225.99 Aligned_cols=230 Identities=20% Similarity=0.199 Sum_probs=169.1
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|.+.+..+..+..+++|++|++++ +.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSH-NRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCC-CCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 4678888888888777667888888888888888 7788777777888888888888888887 56655 678888888
Q ss_pred ccCCcCCC-CCCccCCCCCCCCEEecccccCcc-------------------------cCChhhhhcC------------
Q 020203 148 LSFNNLSG-TIPGSLSKLQKLGALHLDRNKLTG-------------------------SIPESFGTFT------------ 189 (329)
Q Consensus 148 l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~-------------------------~~~~~~~~~~------------ 189 (329)
+++|++++ .+|..++++++|++|++++|.+.+ ..|..+..+.
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 88888775 345677777777777777776643 1122211100
Q ss_pred --------------------------------------------------------------------CCCCeEEcccCc
Q 020203 190 --------------------------------------------------------------------GSIPDLYLSHNQ 201 (329)
Q Consensus 190 --------------------------------------------------------------------~~L~~L~l~~n~ 201 (329)
.+|++|++++|.
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence 145566666666
Q ss_pred Ccccccccc-----------------------------------------------------cCC-ccCEEEeeCCcCcc
Q 020203 202 LSGKIPASL-----------------------------------------------------GSM-DFNTIDLSRNKLEG 227 (329)
Q Consensus 202 l~~~~p~~l-----------------------------------------------------~~~-~L~~L~l~~n~l~~ 227 (329)
++|.+|..+ ... +|++|++++|.+++
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc
Confidence 666666544 334 79999999999999
Q ss_pred chhhhccCCCCCCEEEccCccceeec---CCCCCCCCCCEEEccCCcCccccchh-hcCCCCCCEEEeecCcCcccCC
Q 020203 228 DASFLFGLNKTTQRIDVSRNLLEFNL---SKVEFPQSLTNLDLNHNKIFGSIPAQ-ITSLENLGFLNVSYNRLCGPIP 301 (329)
Q Consensus 228 ~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p 301 (329)
..+..++.+++|++|++++|.+++.. ..+..+++|++|++++|++++.+|.. +..+++|+.|++++|++++.+|
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 88899999999999999999999633 23677899999999999999756643 5566666666666666655443
No 45
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.4e-27 Score=226.37 Aligned_cols=111 Identities=19% Similarity=0.161 Sum_probs=85.3
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCc-cCcccccCCCCCCEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISG-PVPDFISQLTNLTFL 146 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L 146 (329)
.+++.+++++|.+.+..|..|..+++|++|++++ +.+++..+..|+++++|++|++++|.+.+ ..|..++.+++|++|
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCC-CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 5789999999999988888999999999999999 88988888789999999999999999885 356677788888888
Q ss_pred EccCCcCCCCCC-ccCCCCCCCCEEecccccCcc
Q 020203 147 ELSFNNLSGTIP-GSLSKLQKLGALHLDRNKLTG 179 (329)
Q Consensus 147 ~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~ 179 (329)
++++|++.+.+| ..+..+++|++|++++|.+.+
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 888877433433 345555555555555444443
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.6e-28 Score=217.05 Aligned_cols=240 Identities=16% Similarity=0.152 Sum_probs=164.2
Q ss_pred cEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEc
Q 020203 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLEL 148 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 148 (329)
+....+++.+.+...+...+..+++|++|++++ +.+++..|..+.++++|++|++++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTT-SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcC-CccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 344455666666544444445666778888877 67777777777778888888888887775443 777778888888
Q ss_pred cCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCcc
Q 020203 149 SFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEG 227 (329)
Q Consensus 149 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~ 227 (329)
++|++++ ++ ..++|++|++++|.+.+..+.. +. +|++|++++|.+++..+..+..+ +|++|++++|.+++
T Consensus 88 s~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~~---~~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQE-LL----VGPSIETLHAANNNISRVSCSR---GQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEEE-EE----ECTTCCEEECCSSCCSEEEECC---CS-SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred cCCcccc-cc----CCCCcCEEECCCCccCCcCccc---cC-CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 8887762 22 3367777888877777544332 34 67778888877776556566665 77778888877777
Q ss_pred chhhhc-cCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCcc
Q 020203 228 DASFLF-GLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKL 306 (329)
Q Consensus 228 ~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l 306 (329)
..+..+ ..+++|++|++++|.+++.. ....+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+....+
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l 236 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcC
Confidence 665554 35677788888887777553 3334677788888888777 34555777777888888888777543445677
Q ss_pred CccCcccccCCCCCCC
Q 020203 307 QSFGYTEYFHNRCLCG 322 (329)
Q Consensus 307 ~~L~~l~l~~n~~~~~ 322 (329)
++|+.+++++|+..|+
T Consensus 237 ~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TTCCEEECTTCCCBHH
T ss_pred CCCCEEEccCCCccCc
Confidence 7777788887777654
No 47
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=6.9e-27 Score=222.44 Aligned_cols=112 Identities=21% Similarity=0.181 Sum_probs=88.6
Q ss_pred ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccce-eec-CCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEe
Q 020203 214 DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLE-FNL-SKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNV 291 (329)
Q Consensus 214 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 291 (329)
+|++|++++|.+.+..+..+..+++|++|++++|.++ +.+ ..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 4555555556555556666677777888888888776 333 34677789999999999998877888999999999999
Q ss_pred ecCcCcccCCC-CCccCccCcccccCCCCCCCCCC
Q 020203 292 SYNRLCGPIPV-GGKLQSFGYTEYFHNRCLCGAPL 325 (329)
Q Consensus 292 ~~n~l~~~~p~-~~~l~~L~~l~l~~n~~~~~~~~ 325 (329)
++|++++.+|. +.++++|+.+++++|++.|+++.
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999987765 57899999999999999998875
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=7e-27 Score=201.85 Aligned_cols=216 Identities=21% Similarity=0.254 Sum_probs=168.8
Q ss_pred CCCcCccceEecCCCCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCcc
Q 020203 53 TDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGP 132 (329)
Q Consensus 53 ~~~c~~~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 132 (329)
.++|.|.|+.|... ..++.+++++++++. +|..+. +++++|++++ +.+++..+..|.++++|++|++++|.++..
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i 76 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSSCCSCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCCccCee
Confidence 47899999998742 346788999998874 666554 5789999998 788877667888899999999999998855
Q ss_pred CcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccC
Q 020203 133 VPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGS 212 (329)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~ 212 (329)
.+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..|..
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTT
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-CCCEEECCCCcCCccCHhHccC
Confidence 555668889999999999999866666778888999999999988866666677777 8888888888888655555666
Q ss_pred C-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCcc
Q 020203 213 M-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFG 274 (329)
Q Consensus 213 ~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~ 274 (329)
+ +|++|++++|.+++..+..|..+++|++|++++|.+++.++. +..+++|++|++++|.+..
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 6 888888888888877777777777788888877777765543 5556777777777777653
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.6e-28 Score=229.19 Aligned_cols=241 Identities=20% Similarity=0.181 Sum_probs=171.0
Q ss_pred cEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEc
Q 020203 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLEL 148 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 148 (329)
+++.|++++|.+.+..|..|..+++|++|++++ |.+++..| +..+++|++|++++|.+++ ++ ..++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTT-SCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeC-CCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCEEEC
Confidence 577778888777776666777778888888877 66766544 7777788888888887773 22 2277788888
Q ss_pred cCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCccccccccc-CC-ccCEEEeeCCcCc
Q 020203 149 SFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLG-SM-DFNTIDLSRNKLE 226 (329)
Q Consensus 149 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~-~~-~L~~L~l~~n~l~ 226 (329)
++|.+++..+. .+++|+.|++++|.+++..|..+..++ +|++|++++|.+++..|..+. .+ +|+.|++++|.++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 88877754433 346777888888887776676777776 788888888887776666665 34 7788888888777
Q ss_pred cchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCc-ccCCC-CC
Q 020203 227 GDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLC-GPIPV-GG 304 (329)
Q Consensus 227 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~-~~ 304 (329)
+..+ +..+++|++|++++|.+++.++.+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.+|. ..
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 6633 23477788888888887777666666777888888888777 46767777777888888888776 44443 35
Q ss_pred ccCccCccccc-------CCCCCCCCC
Q 020203 305 KLQSFGYTEYF-------HNRCLCGAP 324 (329)
Q Consensus 305 ~l~~L~~l~l~-------~n~~~~~~~ 324 (329)
.++.|+.+++. .++..|+++
T Consensus 260 ~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 260 KNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp TCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred hCCCCcEEeccccccccCCCcccccCC
Confidence 66667777765 666666654
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=5.8e-28 Score=225.48 Aligned_cols=234 Identities=16% Similarity=0.151 Sum_probs=198.4
Q ss_pred CCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCC
Q 020203 76 FAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 155 (329)
Q Consensus 76 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 155 (329)
+...++..+......+++|++|++++ +.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++
T Consensus 18 ~~~~l~~~l~~l~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 94 (487)
T 3oja_A 18 TDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE 94 (487)
T ss_dssp CTTTHHHHHHTTSTTGGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE
T ss_pred chhhhHHHHHHhcccCCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC
Confidence 33344333333444566999999999 89999888899999999999999999996655 8999999999999999983
Q ss_pred CCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhcc
Q 020203 156 TIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFG 234 (329)
Q Consensus 156 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~ 234 (329)
+| ..++|++|++++|.+.+..+.. ++ +|++|++++|.+++..|..++.+ +|+.|++++|.+++..+..+.
T Consensus 95 -l~----~~~~L~~L~L~~N~l~~~~~~~---l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 95 -LL----VGPSIETLHAANNNISRVSCSR---GQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp -EE----ECTTCCEEECCSSCCCCEEECC---CS-SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred -CC----CCCCcCEEECcCCcCCCCCccc---cC-CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 33 3389999999999999665543 45 89999999999998888888877 999999999999998887775
Q ss_pred -CCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCccc
Q 020203 235 -LNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTE 313 (329)
Q Consensus 235 -~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~ 313 (329)
.+++|++|++++|.+++..+ ...+++|++|++++|++++ +|..+..+++|+.|++++|++++..+....+++|+.++
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE
T ss_pred hhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEE
Confidence 78999999999999997744 4468899999999999996 55568899999999999999998555578899999999
Q ss_pred ccCCCCCCCC
Q 020203 314 YFHNRCLCGA 323 (329)
Q Consensus 314 l~~n~~~~~~ 323 (329)
+++|+..|+.
T Consensus 244 l~~N~l~c~~ 253 (487)
T 3oja_A 244 LRGNGFHCGT 253 (487)
T ss_dssp CTTCCBCHHH
T ss_pred cCCCCCcCcc
Confidence 9999999764
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=7e-27 Score=223.74 Aligned_cols=247 Identities=21% Similarity=0.186 Sum_probs=202.0
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.|++++|.+.+..|..|+.+++|++|++++ +.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|+
T Consensus 99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC-CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 4688999999999998888899999999999999 788876666679999999999999999988888899999999999
Q ss_pred ccCCcCCCCCCccCCCC-------------------------------------CCCCEEecccccCcccCChhhhhcCC
Q 020203 148 LSFNNLSGTIPGSLSKL-------------------------------------QKLGALHLDRNKLTGSIPESFGTFTG 190 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l-------------------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~ 190 (329)
+++|.+++.....+..+ ++|+.|++++|.+++ +..+..++
T Consensus 178 L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~- 254 (597)
T 3oja_B 178 LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYP- 254 (597)
T ss_dssp CTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCT-
T ss_pred CcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCC-
Confidence 99999985432222221 245666666666664 35678887
Q ss_pred CCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccC
Q 020203 191 SIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNH 269 (329)
Q Consensus 191 ~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 269 (329)
+|++|++++|.+.+..|..|..+ +|+.|++++|.+++. +..+..+++|++|++++|.++..++.+..+++|++|++++
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCS
T ss_pred CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCC
Confidence 99999999999999889999888 999999999999985 4556778999999999999997666667778999999999
Q ss_pred CcCccccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCCCCCCC
Q 020203 270 NKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGA 323 (329)
Q Consensus 270 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~~~~ 323 (329)
|.+.+. | +..+++|+.|++++|.+.+.... .-+..+....+.+++..|+.
T Consensus 334 N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 334 NSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp SCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 999853 3 67889999999999999875321 22334445556777778875
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.9e-26 Score=204.94 Aligned_cols=236 Identities=18% Similarity=0.275 Sum_probs=152.7
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|.+.+ + +.+..+++|++|++++ +.+.+. +. +..+++|++|++++|.....++ .+..+++|++|+
T Consensus 88 ~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~-n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~ 161 (347)
T 4fmz_A 88 VKLTNLYIGTNKITD-I-SALQNLTNLRELYLNE-DNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT 161 (347)
T ss_dssp TTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTT-SCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEE
T ss_pred CcCCEEEccCCcccC-c-hHHcCCCcCCEEECcC-CcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEE
Confidence 568888888888765 2 3588888888888888 666653 32 6777777777777775443333 366666666666
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCCh---------------------hhhhcCCCCCeEEcccCcCcccc
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPE---------------------SFGTFTGSIPDLYLSHNQLSGKI 206 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~---------------------~~~~~~~~L~~L~l~~n~l~~~~ 206 (329)
+++|.+.+..+ +..+++|++|++++|.+.+ ++. .+..++ +|++|++++|.+++.
T Consensus 162 l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~L~~L~l~~n~l~~~- 236 (347)
T 4fmz_A 162 VTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQITDITPVANMT-RLNSLKIGNNKITDL- 236 (347)
T ss_dssp CCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCCGGGGGCT-TCCEEECCSSCCCCC-
T ss_pred ecCCCcCCchh--hccCCCCCEEEccCCcccc-cccccCCCccceeecccCCCCCCchhhcCC-cCCEEEccCCccCCC-
Confidence 66666653322 5555566666666655542 221 144444 566666666666532
Q ss_pred cccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCC
Q 020203 207 PASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLEN 285 (329)
Q Consensus 207 p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~ 285 (329)
+. +..+ +|++|++++|.+++. ..+..+++|++|++++|.+++. +.+..+++|++|++++|++++..|..+..+++
T Consensus 237 ~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 237 SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 22 4444 666666666666654 3456667777777777776653 44556677777777777777777777777778
Q ss_pred CCEEEeecCcCcccCCCCCccCccCcccccCCCC
Q 020203 286 LGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRC 319 (329)
Q Consensus 286 L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~ 319 (329)
|+.|++++|++++..| ...+++|+.+++++|+.
T Consensus 313 L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred CCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 8888888887776555 66777788888877763
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=8.9e-29 Score=218.72 Aligned_cols=240 Identities=19% Similarity=0.163 Sum_probs=204.0
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|.+.+..|..+..+++|++|++++ +.+++..+ +..+++|++|++++|.+++ ++ ..++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT-SCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC-CcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEE
Confidence 4689999999999987778899999999999999 88887554 8999999999999999984 33 348999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCccccccccc-CC-ccCEEEeeCCcC
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLG-SM-DFNTIDLSRNKL 225 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~-~~-~L~~L~l~~n~l 225 (329)
+++|++++..+. .+++|++|++++|.+++..+..+..+. +|++|++++|.+++..+..+. .+ +|++|++++|.+
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 999999855443 367899999999999977777888888 999999999999987777764 44 899999999999
Q ss_pred ccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCc-ccCCC-C
Q 020203 226 EGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLC-GPIPV-G 303 (329)
Q Consensus 226 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~-~ 303 (329)
++.... ..+++|++|++++|.+++.++.+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|. .
T Consensus 182 ~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 182 YDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp CEEECC--CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred cccccc--cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 877433 3489999999999999988777888899999999999998 68888999999999999999998 55554 3
Q ss_pred CccCccCcccccCCCCCCC
Q 020203 304 GKLQSFGYTEYFHNRCLCG 322 (329)
Q Consensus 304 ~~l~~L~~l~l~~n~~~~~ 322 (329)
..++.|+.+++.+++.+.+
T Consensus 259 ~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHS
T ss_pred hccccceEEECCCchhccC
Confidence 7788888888885544433
No 54
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.9e-26 Score=209.52 Aligned_cols=269 Identities=21% Similarity=0.226 Sum_probs=188.5
Q ss_pred CCCCCCCCCCcC----ccceEecC------C----------CCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCC
Q 020203 46 LASWNPKTDCCD----WYCVTCDL------T----------TNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSL 105 (329)
Q Consensus 46 ~~~w~~~~~~c~----~~gv~c~~------~----------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l 105 (329)
+++|....+||. |.++.++. . -.+++.++++++.+....+..+..+++|++|++++ +.+
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~-n~i 81 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQI 81 (390)
T ss_dssp ----CCEECBCC------EEEESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT-SCC
T ss_pred cCCCCCccceehhhhhhccceeeeeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCC-Ccc
Confidence 467887777775 54444431 0 14567888988888664444578899999999999 788
Q ss_pred CCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhh
Q 020203 106 TGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESF 185 (329)
Q Consensus 106 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~ 185 (329)
.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|+++...+..+..+++|++|++++|.+.+..+..+
T Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 161 (390)
T 3o6n_A 82 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161 (390)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhc
Confidence 88777789999999999999999998778889999999999999999995444457899999999999999997777788
Q ss_pred hhcCCCCCeEEcccCcCcccccccccCC--------------------------------------ccCEEEeeCCcCcc
Q 020203 186 GTFTGSIPDLYLSHNQLSGKIPASLGSM--------------------------------------DFNTIDLSRNKLEG 227 (329)
Q Consensus 186 ~~~~~~L~~L~l~~n~l~~~~p~~l~~~--------------------------------------~L~~L~l~~n~l~~ 227 (329)
..++ +|++|++++|.+++.....+..+ +|+.|++++|.+++
T Consensus 162 ~~l~-~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 162 QATT-SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 240 (390)
T ss_dssp SSCT-TCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC
T ss_pred cCCC-CCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc
Confidence 8888 99999999999885422222211 23444444444443
Q ss_pred chhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCcc
Q 020203 228 DASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKL 306 (329)
Q Consensus 228 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l 306 (329)
. ..+..+++|++|++++|.+++..+. +..+++|++|++++|+++ .+|..+..+++|+.|++++|++.+..+....+
T Consensus 241 ~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l 317 (390)
T 3o6n_A 241 T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 317 (390)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHH
T ss_pred c--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcceecCcccccc
Confidence 2 3455566666666666666655433 455566666666666666 34555556666777777777666433334556
Q ss_pred CccCcccccCCCC
Q 020203 307 QSFGYTEYFHNRC 319 (329)
Q Consensus 307 ~~L~~l~l~~n~~ 319 (329)
++|+.+++++|+.
T Consensus 318 ~~L~~L~L~~N~i 330 (390)
T 3o6n_A 318 DRLENLYLDHNSI 330 (390)
T ss_dssp TTCSEEECCSSCC
T ss_pred CcCCEEECCCCcc
Confidence 6677777777663
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=2.4e-26 Score=199.04 Aligned_cols=216 Identities=19% Similarity=0.187 Sum_probs=174.6
Q ss_pred cCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCC
Q 020203 84 IPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSK 163 (329)
Q Consensus 84 ~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 163 (329)
+|..+. +++++|++++ +.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+.+
T Consensus 22 ip~~l~--~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp CCSSSC--TTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred cCCCCC--CCccEEECCC-CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 444443 4788888888 7888776667888888999999998888666667888889999999999888777778888
Q ss_pred CCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCccc-ccccccCC-ccCEEEeeCCcCccchhhhccCCCCCC-
Q 020203 164 LQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGK-IPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQ- 240 (329)
Q Consensus 164 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~- 240 (329)
+++|++|++++|.+.+..+..+..+. +|++|++++|.+.+. +|..+..+ +|++|++++|.+++..+..+..+++++
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CccccEEECCCCCccccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 88999999998888865555677777 899999999888763 57778777 889999999988887777776666666
Q ss_pred ---EEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCC
Q 020203 241 ---RIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVG 303 (329)
Q Consensus 241 ---~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 303 (329)
+|++++|.+++..+......+|++|++++|++++..+..+..+++|+.|++++|++.+..|..
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred cceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 899999999887776555568999999999998666666788999999999999999876654
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=216.35 Aligned_cols=160 Identities=21% Similarity=0.201 Sum_probs=124.8
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|.+.+..+..|.++++|++|++++ +.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCC-CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 4688889998888887777888888999999988 678877777788888899999998888876677888888888888
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcc-cCChhhhhcCCCCCeEEcccCcCcccccccccCC-cc----CEEEee
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTG-SIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DF----NTIDLS 221 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L----~~L~l~ 221 (329)
+++|++++..+..++++++|++|++++|.+.+ .+|..+.+++ +|++|++++|.+++..+..++.+ +| +.++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccC-CCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 88888885555568888888888888888875 4688888887 88888888888876555555444 44 566666
Q ss_pred CCcCccch
Q 020203 222 RNKLEGDA 229 (329)
Q Consensus 222 ~n~l~~~~ 229 (329)
+|.+++..
T Consensus 186 ~n~l~~~~ 193 (570)
T 2z63_A 186 LNPMNFIQ 193 (570)
T ss_dssp TCCCCEEC
T ss_pred CCCceecC
Confidence 66554433
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.8e-28 Score=215.06 Aligned_cols=222 Identities=19% Similarity=0.247 Sum_probs=185.8
Q ss_pred EEEEEeCCCCC-CeecCcCCC-------CCCCCCEEeCCCCCCCCCCChhhh--cCCCCCCEEeccCccCCccCcccccC
Q 020203 70 INSLTIFAGDL-PGQIPPEVG-------DLPYLETLMFHKLPSLTGPIQPAI--AKLKNLKTLRISWTNISGPVPDFISQ 139 (329)
Q Consensus 70 v~~l~l~~~~l-~~~~~~~l~-------~l~~L~~L~l~~~~~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~~~~ 139 (329)
++.++++++.+ .+.+|..+. ++++|++|++++ +.+++.+|..+ ..+++|++|++++|.+++. |..+..
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN-LEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEE-EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccC-CcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence 66777888877 345666554 789999999999 89998888876 8999999999999999966 877777
Q ss_pred C-----CCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCccc--CChhh--hhcCCCCCeEEcccCcCcc--ccc-
Q 020203 140 L-----TNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGS--IPESF--GTFTGSIPDLYLSHNQLSG--KIP- 207 (329)
Q Consensus 140 l-----~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~~~~~--~~~~~~L~~L~l~~n~l~~--~~p- 207 (329)
+ ++|++|++++|++++..|..++.+++|++|++++|++.+. ++..+ ..++ +|++|++++|.+++ .++
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP-TLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT-TCCEEECTTSCCCCHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC-CCCEEECCCCcCcchHHHHH
Confidence 6 9999999999999988889999999999999999998765 34444 6777 99999999999983 223
Q ss_pred ccccCC-ccCEEEeeCCcCccchh-hhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCC
Q 020203 208 ASLGSM-DFNTIDLSRNKLEGDAS-FLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLEN 285 (329)
Q Consensus 208 ~~l~~~-~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~ 285 (329)
..+..+ +|++|++++|.+++..+ ..+..+++|++|++++|.++..+..+. ++|++|++++|++++. |. +..+++
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 223454 89999999999998774 556678999999999999995444343 7999999999999965 66 889999
Q ss_pred CCEEEeecCcCcc
Q 020203 286 LGFLNVSYNRLCG 298 (329)
Q Consensus 286 L~~L~l~~n~l~~ 298 (329)
|++|++++|++++
T Consensus 298 L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 298 VGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEECTTCTTTC
T ss_pred CCEEeccCCCCCC
Confidence 9999999999986
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=5.5e-26 Score=196.83 Aligned_cols=206 Identities=18% Similarity=0.191 Sum_probs=178.3
Q ss_pred CCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEE
Q 020203 117 KNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLY 196 (329)
Q Consensus 117 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 196 (329)
++|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+. +|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc-cccEEE
Confidence 5799999999999977777899999999999999999977777899999999999999999977778898988 999999
Q ss_pred cccCcCcccccccccCC-ccCEEEeeCCcCccc-hhhhccCCCCCCEEEccCccceeecCC-CCCCCCCC----EEEccC
Q 020203 197 LSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGD-ASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLT----NLDLNH 269 (329)
Q Consensus 197 l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~----~L~l~~ 269 (329)
+++|.+.+..+..+..+ +|++|++++|.+++. .+..++.+++|++|++++|.+++..+. +..+.+|+ +|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 99999997666678777 999999999999885 588899999999999999999976543 44445555 899999
Q ss_pred CcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccCCCCCCCCC
Q 020203 270 NKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNRCLCGAP 324 (329)
Q Consensus 270 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~~~~~~~ 324 (329)
|++++..+. .....+|++|++++|++++..+. +..+++|+.+++++|++.|+++
T Consensus 187 n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 999854444 44556899999999999976655 4789999999999999999986
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=7.6e-26 Score=197.30 Aligned_cols=201 Identities=22% Similarity=0.234 Sum_probs=139.5
Q ss_pred CCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCC
Q 020203 88 VGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKL 167 (329)
Q Consensus 88 l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 167 (329)
+.++++++++++++ +.++. +|..+. +.+++|++++|.+++..+..+..+++|++|++++|.+++ ++.. +.+++|
T Consensus 6 ~~~l~~l~~l~~~~-~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTT-SCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTC
T ss_pred ccccCCccEEECCC-CCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcC
Confidence 45667777888877 66664 444332 577788888888776666777777888888888887773 3322 677777
Q ss_pred CEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccC
Q 020203 168 GALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSR 246 (329)
Q Consensus 168 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 246 (329)
++|++++|.+. .+|..+..++ +|++|++++|++++..+..|..+ +|++|++++|++++.++..|..+++|+.|++++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 77777777776 6666666666 77777777777775555666666 777777777777776666667777777777777
Q ss_pred ccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCc
Q 020203 247 NLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLC 297 (329)
Q Consensus 247 n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 297 (329)
|.++..++. +..+++|++|++++|+++ .+|..+...++|+.+++++|.+.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 777655443 355667777777777776 56666666667777777777664
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=3e-25 Score=191.62 Aligned_cols=203 Identities=22% Similarity=0.257 Sum_probs=139.7
Q ss_pred CCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEec
Q 020203 93 YLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHL 172 (329)
Q Consensus 93 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 172 (329)
..+.+++++ +.++. +|..+. +++++|++++|.+.+..+..|..+++|++|++++|+++...+..|..+++|++|++
T Consensus 17 ~~~~l~~~~-~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTT-SCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccC-CCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 466777777 66664 454332 56788888888877555556777888888888888877544455677778888888
Q ss_pred ccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCcccee
Q 020203 173 DRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEF 251 (329)
Q Consensus 173 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 251 (329)
++|.+.+..+..+..+. +|++|++++|.+++..+..|..+ +|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 93 ~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 88877754445556666 77777777777776555556666 77777777777777666667777777777777777765
Q ss_pred ecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccC
Q 020203 252 NLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPI 300 (329)
Q Consensus 252 ~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 300 (329)
..+. +..+++|++|++++|++++..+..+..+++|+.|++++|.+...-
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 5543 455667777777777776544455666777777777777665443
No 61
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=7.2e-25 Score=195.92 Aligned_cols=235 Identities=21% Similarity=0.282 Sum_probs=161.4
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|.+.+. +. +..+++|++|++++ +.++.. +.+.++++|++|++++|.+.+ ++. +..+++|++|+
T Consensus 66 ~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~-n~i~~~--~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGT-NKITDI--SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLN 138 (347)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCS-SCCCCC--GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred CCccEEEccCCccccc-hh-hhcCCcCCEEEccC-CcccCc--hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEE
Confidence 5688889988888754 33 88889999999988 677663 368888999999999998884 444 88889999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-c------------
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-D------------ 214 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~------------ 214 (329)
+++|.....++ .+..+++|++|++++|.+.+. +. +..++ +|++|++++|.+.+..+ +..+ +
T Consensus 139 l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~-~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-TP-IANLT-DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp CTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCT-TCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CCCCCCccccc-chhhCCCCcEEEecCCCcCCc-hh-hccCC-CCCEEEccCCccccccc--ccCCCccceeecccCCCC
Confidence 99986664444 488899999999999998743 33 77777 89999999998874322 3322 4
Q ss_pred ----------cCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCC
Q 020203 215 ----------FNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLE 284 (329)
Q Consensus 215 ----------L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~ 284 (329)
|++|++++|.+++..+ +..+++|++|++++|.+++. +.+..+++|++|++++|++++ + ..+..++
T Consensus 213 ~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~ 287 (347)
T 4fmz_A 213 DITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLS 287 (347)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCT
T ss_pred CCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCC-C-hhhcCCC
Confidence 4555555555544333 44555555666655555532 334555666666666666653 2 2456666
Q ss_pred CCCEEEeecCcCcccCCC-CCccCccCcccccCCCCC
Q 020203 285 NLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNRCL 320 (329)
Q Consensus 285 ~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~~~ 320 (329)
+|+.|++++|++.+..|. +..+++|+.+++++|+..
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 777777777777665544 356677777777777643
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.3e-24 Score=201.17 Aligned_cols=205 Identities=24% Similarity=0.293 Sum_probs=118.3
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.++++++.+.+. | .+..+++|++|++++ +.+++. | ++.+++|++|++++|.+++. + ++.+++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~-n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTS-NNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCS-SCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccC-CcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 3566677777766653 3 466677777777776 566653 2 66667777777777776642 3 66667777777
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCc
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLE 226 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~ 226 (329)
+++|++++ ++ ++.+++|++|++++|.+++ ++ +..+. +|++|++++|...+.+ .+..+ +|++|++++|.++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNT-QLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCT-TCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCC-cCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 77776664 33 6666667777777666664 22 44454 5666666666444333 23333 5566666666555
Q ss_pred cchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcc
Q 020203 227 GDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCG 298 (329)
Q Consensus 227 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 298 (329)
+.. +..+++|++|++++|.+++. .+..+++|++|++++|++++ +| ++.+++|+.|++++|++++
T Consensus 184 ~l~---l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 184 ELD---VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CCC---CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred eec---cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 532 44555555555555555543 23444555555555555553 33 4455555555555555554
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.1e-24 Score=202.45 Aligned_cols=234 Identities=25% Similarity=0.394 Sum_probs=136.7
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|.+.+..+ +..+++|++|++++ +.+.+..+ +.++++|++|++++|.+.+. +. +..+++|++|+
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLE 140 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCC-CccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEE
Confidence 467888888888766433 77788888888887 66666433 77777888888887777743 33 66677777777
Q ss_pred ccCCcCCCCCCc--------------------cCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCccccc
Q 020203 148 LSFNNLSGTIPG--------------------SLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIP 207 (329)
Q Consensus 148 l~~n~l~~~~p~--------------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 207 (329)
+++|.+.+. +. .+..+++|++|++++|.+.+ ++ .+..+. +|++|++++|.+.+..|
T Consensus 141 l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~-~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 141 LSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-IS-VLAKLT-NLESLIATNNQISDITP 216 (466)
T ss_dssp EEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCT-TCSEEECCSSCCCCCGG
T ss_pred CCCCccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-Ch-hhccCC-CCCEEEecCCccccccc
Confidence 777766532 11 13445555566666665542 22 244444 55555555555543322
Q ss_pred --------------------ccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEE
Q 020203 208 --------------------ASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLD 266 (329)
Q Consensus 208 --------------------~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 266 (329)
+.+..+ +|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 293 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLE 293 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEE
Confidence 122222 44444444444444333 4455555555555555554333 44455666666
Q ss_pred ccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCC
Q 020203 267 LNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNR 318 (329)
Q Consensus 267 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~ 318 (329)
+++|++++..+ +..+++|+.|++++|++.+..| ...+++|+.+++++|+
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc
Confidence 66666654322 5566666666666666665544 4566677777777664
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.1e-24 Score=202.42 Aligned_cols=234 Identities=24% Similarity=0.345 Sum_probs=174.9
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcc------------
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPD------------ 135 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~------------ 135 (329)
.+++.++++++.+.+..+ +..+++|++|++++ +.+++.. .+.++++|++|++++|.+.+ ++.
T Consensus 90 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~-n~l~~~~--~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITP--LANLTNLTGLTLFN-NQITDID--PLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSF 163 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS-SCCCCCG--GGTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEE
T ss_pred ccCCEEECCCCccccChh--hcCCCCCCEEECCC-CCCCCCh--HHcCCCCCCEEECCCCccCC-ChhhccCCcccEeec
Confidence 567888888888876544 88888888888888 6666642 26677777777777776653 211
Q ss_pred --------cccCCCCCCEEEccCCcCCC----------------------CCCccCCCCCCCCEEecccccCcccCChhh
Q 020203 136 --------FISQLTNLTFLELSFNNLSG----------------------TIPGSLSKLQKLGALHLDRNKLTGSIPESF 185 (329)
Q Consensus 136 --------~~~~l~~L~~L~l~~n~l~~----------------------~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~ 185 (329)
.+..+++|++|++++|++++ ..| ++.+++|++|++++|.+.+ + ..+
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l 239 (466)
T 1o6v_A 164 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTL 239 (466)
T ss_dssp EESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGG
T ss_pred CCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhh
Confidence 13444555555555555542 222 3445555555555555552 2 346
Q ss_pred hhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCE
Q 020203 186 GTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTN 264 (329)
Q Consensus 186 ~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 264 (329)
..++ +|++|++++|.+.+..+ +..+ +|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++
T Consensus 240 ~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 313 (466)
T 1o6v_A 240 ASLT-NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTY 313 (466)
T ss_dssp GGCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSE
T ss_pred hcCC-CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCE
Confidence 6666 88999999998886544 6666 99999999999998766 7889999999999999997655 677899999
Q ss_pred EEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCCCC
Q 020203 265 LDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCL 320 (329)
Q Consensus 265 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~ 320 (329)
|++++|++++..| +..+++|+.|++++|++++. +....+++|+.+++++|+..
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccC
Confidence 9999999997665 78899999999999999975 66788999999999999753
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2e-24 Score=199.93 Aligned_cols=227 Identities=19% Similarity=0.168 Sum_probs=171.8
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|.+.+. | ++.+++|++|++++ +.+++. + ++++++|++|++++|.+++ ++ ++.+++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~-N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDS-NKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCS-SCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcC-CCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 5788999999999874 3 88999999999999 788874 3 8889999999999999985 44 88899999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCc
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLE 226 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~ 226 (329)
+++|++++ ++ ++.+++|++|++++|...+.+ .+..++ +|++|++++|++++ +| +..+ +|+.|++++|.++
T Consensus 134 l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 134 CARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQT-QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCT-TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred CCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCC-cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence 99999986 33 778888999999888655555 356666 88888888888885 44 5555 7888888888888
Q ss_pred cchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCC-------CCCEEEeecCcCccc
Q 020203 227 GDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLE-------NLGFLNVSYNRLCGP 299 (329)
Q Consensus 227 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~-------~L~~L~l~~n~l~~~ 299 (329)
+. .++.+++|++|++++|.+++ +| +..+++|++|++++|++++..+..+..+. +|+.+++++|++.|.
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred ee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 75 36778888888888888887 34 66677888888888888765444333333 345555555655555
Q ss_pred CCCCCccCccCcccccCCCC
Q 020203 300 IPVGGKLQSFGYTEYFHNRC 319 (329)
Q Consensus 300 ~p~~~~l~~L~~l~l~~n~~ 319 (329)
+| .+.+++|+.+++++|+.
T Consensus 280 ~~-~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 280 FQ-AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp EE-CTTCTTCCCCCCTTCTT
T ss_pred cc-ccccccCCEEECCCCcc
Confidence 55 24566666666666653
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=201.15 Aligned_cols=230 Identities=16% Similarity=0.174 Sum_probs=194.2
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcc--cccCCCCCCE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPD--FISQLTNLTF 145 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~ 145 (329)
.+++.+++++|.+.+..+..+..+++|++|++++ +.+++..+..+.++++|++|++++|.+. .+|. .+..+++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence 5789999999999998888999999999999999 8898876666999999999999999999 4554 7889999999
Q ss_pred EEccCC-cCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccc-cCC-ccCEEEeeC
Q 020203 146 LELSFN-NLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASL-GSM-DFNTIDLSR 222 (329)
Q Consensus 146 L~l~~n-~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l-~~~-~L~~L~l~~ 222 (329)
|++++| .+.+..+..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+. .+|..+ ... +|+.|++++
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS-EEEEEEEECSCST-THHHHHHHHTTTEEEEEEES
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc-cCCeecCCCCccc-cchhhhhhhcccccEEECCC
Confidence 999999 46656677899999999999999999988899999998 9999999999987 455443 334 899999999
Q ss_pred CcCccchhhhc---cCCCCCCEEEccCccceee-----cCCCCCCCCCCEEEccCCcCccccchh-hcCCCCCCEEEeec
Q 020203 223 NKLEGDASFLF---GLNKTTQRIDVSRNLLEFN-----LSKVEFPQSLTNLDLNHNKIFGSIPAQ-ITSLENLGFLNVSY 293 (329)
Q Consensus 223 n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~ 293 (329)
|.+++..+..+ .....++.++++++.+++. +..+..+++|++|++++|+++ .+|.. +..+++|++|++++
T Consensus 232 n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeC
Confidence 99988655433 3467788999999887752 223566789999999999998 66666 58999999999999
Q ss_pred CcCcccCCC
Q 020203 294 NRLCGPIPV 302 (329)
Q Consensus 294 n~l~~~~p~ 302 (329)
|++.+..|.
T Consensus 311 N~~~~~~~~ 319 (353)
T 2z80_A 311 NPWDCSCPR 319 (353)
T ss_dssp SCBCCCHHH
T ss_pred CCccCcCCC
Confidence 999987663
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=9.7e-25 Score=188.60 Aligned_cols=201 Identities=22% Similarity=0.288 Sum_probs=125.0
Q ss_pred CCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCC
Q 020203 89 GDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLG 168 (329)
Q Consensus 89 ~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 168 (329)
..+++|+.|++++ +.++.. +.+..+++|++|++++|.+.+ + ..+..+++|++|++++|++++..+..++.+++|+
T Consensus 38 ~~l~~L~~L~l~~-~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANN-SDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTT-SCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCC-CCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3455666666666 444432 245666666666666666663 2 2466666666666666666655555566666666
Q ss_pred EEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCc
Q 020203 169 ALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRN 247 (329)
Q Consensus 169 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 247 (329)
+|++++|.+++..+..+..+. +|++|++++|.+++..+..+..+ +|++|++++|.+++..+..++.+++|++|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCC-CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 666666666644444455555 66666666666665444445555 6666777776666666666666667777777777
Q ss_pred cceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC
Q 020203 248 LLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV 302 (329)
Q Consensus 248 ~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 302 (329)
.+++.++. +..+++|++|++++|.+.+ .+++|+.++++.|+++|.+|.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC
Confidence 76665544 4556677777777776653 344566777777777777765
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.2e-24 Score=188.06 Aligned_cols=199 Identities=19% Similarity=0.163 Sum_probs=174.1
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++++++. +|..+. ++++.|++++ +.+++..+..|..+++|++|++++|.+++ ++. ...+++|++|+
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~ 83 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLD 83 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCCEEE
T ss_pred CCccEEECCCCCCCc-CCCCCC--CCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCCEEE
Confidence 467889999998864 566554 6899999999 88988888899999999999999999994 444 37899999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCc
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLE 226 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~ 226 (329)
+++|+++ .+|..+..+++|++|++++|++++..+..+..+. +|++|++++|++++..+..|..+ +|+.|++++|+++
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 9999998 7888899999999999999999966667888888 99999999999997666667777 8999999999999
Q ss_pred cchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCcc
Q 020203 227 GDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFG 274 (329)
Q Consensus 227 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 274 (329)
..++..|..+++|++|++++|.++..+..+....+|+++++++|.+..
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 888888899999999999999999776667667799999999999864
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.4e-24 Score=187.61 Aligned_cols=206 Identities=23% Similarity=0.251 Sum_probs=177.4
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.++++++.+.. .+.+..+++|++|++++ +.+++. +.+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~-n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS--VQGIQYLPNVRYLALGG-NKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCC--CTTGGGCTTCCEEECTT-SCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCccc--ccccccCCCCcEEECCC-CCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 568899999988764 34588899999999999 778773 4788999999999999999977777789999999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCc
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLE 226 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~ 226 (329)
+++|++++..+..++.+++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+ +|++|++++|.++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 999999977777789999999999999999966666677887 99999999999997666667777 9999999999999
Q ss_pred cchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCC
Q 020203 227 GDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLEN 285 (329)
Q Consensus 227 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~ 285 (329)
+..+..+..+++|++|++++|.+.+.. ++|+.++++.|+++|.+|..++.++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~------~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTC------PGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCT------TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccC------cHHHHHHHHHHhCCCcccCcccccCC
Confidence 988888899999999999999888553 47899999999999999998876654
No 70
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=3.4e-24 Score=183.01 Aligned_cols=190 Identities=22% Similarity=0.284 Sum_probs=140.3
Q ss_pred CCcCccceEecCCCCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccC
Q 020203 54 DCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPV 133 (329)
Q Consensus 54 ~~c~~~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 133 (329)
+||.|.|..|.. ..+.++++++++. .+|..+. ++++.|++++ +.+.+..+..|.++++|++|++++|.+.+..
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 75 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQS-TGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccC-CCcCccCHhHhcCcccCCEEECCCCcCCccC
Confidence 688899999953 3456788888886 4565554 5788888888 7888877777888888888888888888777
Q ss_pred cccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC
Q 020203 134 PDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM 213 (329)
Q Consensus 134 ~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~ 213 (329)
+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+. +|++|++++|.+++..+..|..+
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l 154 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-KLKELRLNTNQLQSIPAGAFDKL 154 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTC
T ss_pred HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC-cccEEECcCCcCCccCHHHcCcC
Confidence 77788888888888888888866666778888888888888888754444556666 77788887777775545456665
Q ss_pred -ccCEEEeeCCcCccchhhhccCCCCCCEEEccCcccee
Q 020203 214 -DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEF 251 (329)
Q Consensus 214 -~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 251 (329)
+|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 67777777777776666666666666666666666554
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.4e-23 Score=201.67 Aligned_cols=147 Identities=20% Similarity=0.258 Sum_probs=119.7
Q ss_pred EeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcC
Q 020203 74 TIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNL 153 (329)
Q Consensus 74 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 153 (329)
+-++.+++ .+|..+. +++++|+|++ |.+++..+.+|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++
T Consensus 37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 37 QCMELNFY-KIPDNLP--FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ECCCCCcC-ccCCCCC--cCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 44455554 3565443 3799999999 899988888999999999999999999977778899999999999999999
Q ss_pred CCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcc-cccccccCC-ccCEEEeeCCcC
Q 020203 154 SGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSG-KIPASLGSM-DFNTIDLSRNKL 225 (329)
Q Consensus 154 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~l~~~-~L~~L~l~~n~l 225 (329)
++..+..|.++++|++|++++|.+++..+..+++++ +|++|++++|.+.. ..|..++.+ +|++|++++|.+
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 966667899999999999999999966666788888 99999999999875 345555554 566666655543
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=5.2e-24 Score=180.47 Aligned_cols=200 Identities=17% Similarity=0.127 Sum_probs=111.4
Q ss_pred CCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCcc-CCccCcccccCCCCCCEEEccC-CcCCCCCCccCCCCCCCCEE
Q 020203 93 YLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTN-ISGPVPDFISQLTNLTFLELSF-NNLSGTIPGSLSKLQKLGAL 170 (329)
Q Consensus 93 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L 170 (329)
++++|++++ +.+++..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |++++..+..|..+++|++|
T Consensus 32 ~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 566666666 55555444455566666666666664 5533334555555666666655 55553333445555555555
Q ss_pred ecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCCccCEEEeeCC-cCccchhhhccCCCCCC-EEEccCcc
Q 020203 171 HLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRN-KLEGDASFLFGLNKTTQ-RIDVSRNL 248 (329)
Q Consensus 171 ~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~-~L~l~~n~ 248 (329)
++++|.+++ +|. +..+. +|+ .|++|++++| .+++..+..|..+++|+ +|++++|.
T Consensus 111 ~l~~n~l~~-lp~-~~~l~-~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVY-STD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEEECCCS-CCC-CTTCC-BCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred eCCCCCCcc-ccc-ccccc-ccc--------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 555555542 333 33333 333 0115555555 55555555555666666 66666666
Q ss_pred ceeecCCCCCCCCCCEEEccCCc-CccccchhhcCC-CCCCEEEeecCcCcccCCCCCccCccCcccccCCC
Q 020203 249 LEFNLSKVEFPQSLTNLDLNHNK-IFGSIPAQITSL-ENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNR 318 (329)
Q Consensus 249 l~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l-~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~ 318 (329)
++...+.....++|++|++++|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+++|+.|++.++.
T Consensus 168 l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 168 FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC-
T ss_pred CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCcc
Confidence 66433332222567777777774 664445556666 777777777777764 3332 56677777776654
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=6.3e-24 Score=202.69 Aligned_cols=244 Identities=23% Similarity=0.234 Sum_probs=140.8
Q ss_pred CCCCCCCCCcCccceEe------cCCCCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCC
Q 020203 47 ASWNPKTDCCDWYCVTC------DLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLK 120 (329)
Q Consensus 47 ~~w~~~~~~c~~~gv~c------~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 120 (329)
..|....++|.|.|..+ ......++.+++++++++ .+|..+. ++|++|++++ +.++. +|. .+++|+
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~-N~l~~-lp~---~l~~L~ 84 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPD-NNLTS-LPA---LPPELR 84 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECS-CCCSC-CCC---CCTTCC
T ss_pred HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecC-CCCCC-CCC---cCCCCC
Confidence 45666677888855221 111234677888888776 5666554 6777777777 56664 443 467777
Q ss_pred EEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccC
Q 020203 121 TLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHN 200 (329)
Q Consensus 121 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 200 (329)
+|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|+.|++++|.++ .+|..+ + +|++|++++|
T Consensus 85 ~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~l---~-~L~~L~Ls~N 151 (622)
T 3g06_A 85 TLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVLP---P-GLQELSVSDN 151 (622)
T ss_dssp EEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCCC---T-TCCEEECCSS
T ss_pred EEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCCC---C-CCCEEECcCC
Confidence 7777777776 4554 45666777777666663 333 2344444444444444 233211 2 3444444444
Q ss_pred cCcccccccc-----------------cCC-ccCEEEeeCCcCccchhh--hc--------------cCCCCCCEEEccC
Q 020203 201 QLSGKIPASL-----------------GSM-DFNTIDLSRNKLEGDASF--LF--------------GLNKTTQRIDVSR 246 (329)
Q Consensus 201 ~l~~~~p~~l-----------------~~~-~L~~L~l~~n~l~~~~~~--~~--------------~~~~~L~~L~l~~ 246 (329)
.+++ +|..+ ... +|+.|++++|.+++.... .+ ..+++|++|++++
T Consensus 152 ~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~ 230 (622)
T 3g06_A 152 QLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSG 230 (622)
T ss_dssp CCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred cCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccC
Confidence 3332 11111 011 345555555555442110 00 1125677777777
Q ss_pred ccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC-CCccCccCcccccCCCCC
Q 020203 247 NLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV-GGKLQSFGYTEYFHNRCL 320 (329)
Q Consensus 247 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~l~~L~~l~l~~n~~~ 320 (329)
|.+++.+ ..+++|++|++++|+++ .+|. .+++|+.|++++|+++ .+|. +..+++|+.+++++|+..
T Consensus 231 N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 231 NRLTSLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp SCCSCCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred CccCcCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 7776533 34467888888888877 5665 5678888888888888 4554 577888888888888753
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.5e-25 Score=201.66 Aligned_cols=247 Identities=19% Similarity=0.167 Sum_probs=178.0
Q ss_pred EEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCCh----hhhcCCC-CCCEEeccCccCCccCcccccCC-----CC
Q 020203 73 LTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQ----PAIAKLK-NLKTLRISWTNISGPVPDFISQL-----TN 142 (329)
Q Consensus 73 l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~----~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~ 142 (329)
.+++.+++.|.+|..+...++|++|++++ +.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSL-NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccC-CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46778888888777666666799999998 77877766 6777888 89999999998887666666554 88
Q ss_pred CCEEEccCCcCCCCCCccC----CCC-CCCCEEecccccCcccCChhhhhc----CCCCCeEEcccCcCccccc----cc
Q 020203 143 LTFLELSFNNLSGTIPGSL----SKL-QKLGALHLDRNKLTGSIPESFGTF----TGSIPDLYLSHNQLSGKIP----AS 209 (329)
Q Consensus 143 L~~L~l~~n~l~~~~p~~l----~~l-~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~p----~~ 209 (329)
|++|++++|++++..+..+ ..+ ++|++|++++|.+++..+..+... ..+|++|++++|.+++... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999998886655533 344 789999999999886655555432 2278999999998885333 33
Q ss_pred ccCC--ccCEEEeeCCcCccchhhh----ccCC-CCCCEEEccCccceee-----cCCCCC-CCCCCEEEccCCcCcccc
Q 020203 210 LGSM--DFNTIDLSRNKLEGDASFL----FGLN-KTTQRIDVSRNLLEFN-----LSKVEF-PQSLTNLDLNHNKIFGSI 276 (329)
Q Consensus 210 l~~~--~L~~L~l~~n~l~~~~~~~----~~~~-~~L~~L~l~~n~l~~~-----~~~~~~-~~~L~~L~l~~n~l~~~~ 276 (329)
+... +|++|++++|.+++..+.. +... ++|++|++++|.+++. ...+.. .++|++|++++|++++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 3333 7899999999887765543 3444 5899999999988752 111222 358999999999887654
Q ss_pred c----hhhcCCCCCCEEEeecCcCccc--------CCCCCccCccCcccccCCCCC
Q 020203 277 P----AQITSLENLGFLNVSYNRLCGP--------IPVGGKLQSFGYTEYFHNRCL 320 (329)
Q Consensus 277 p----~~~~~l~~L~~L~l~~n~l~~~--------~p~~~~l~~L~~l~l~~n~~~ 320 (329)
+ ..+..+++|+.|++++|.+.+. ......+++|+.+|+++|+.-
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 4 3346778899999999984332 123457778888999888754
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.4e-23 Score=179.11 Aligned_cols=178 Identities=23% Similarity=0.281 Sum_probs=114.7
Q ss_pred CCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEec
Q 020203 93 YLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHL 172 (329)
Q Consensus 93 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 172 (329)
..+++++++ +.++. +|..+. +.+++|++++|.+.+..+..+.++++|++|++++|++++..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~-~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQG-KSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTT-CCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCC-CCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 455666666 55553 443333 46777777777777666666777777777777777777666666677777777777
Q ss_pred ccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCcccee
Q 020203 173 DRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEF 251 (329)
Q Consensus 173 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 251 (329)
++|.+++..+..+..+. +|++|++++|.+++..+..|..+ +|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 91 ~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 77777654455556665 67777777777765444445555 67777777777766666666666666666666666665
Q ss_pred ecCC-CCCCCCCCEEEccCCcCccc
Q 020203 252 NLSK-VEFPQSLTNLDLNHNKIFGS 275 (329)
Q Consensus 252 ~~~~-~~~~~~L~~L~l~~n~l~~~ 275 (329)
.++. +..+++|++|++++|.+.+.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5442 45556666666666666544
No 76
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=2.3e-24 Score=199.41 Aligned_cols=225 Identities=18% Similarity=0.182 Sum_probs=132.2
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCC------------------------------
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLK------------------------------ 117 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~------------------------------ 117 (329)
.+++.++++++.+ |.+|++++++++|++|++++ +.+.+.+|..+++++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAW-SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHH-HHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccC-CcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 3455566666665 55565566666555555555 445555555444443
Q ss_pred ---CCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCe
Q 020203 118 ---NLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPD 194 (329)
Q Consensus 118 ---~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 194 (329)
+|++|++++|.+++ +|.. .++|++|++++|++++ ++.. .++|++|++++|.+++ +| .+..+. +|++
T Consensus 89 ~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~-~L~~ 157 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSS-FLKI 157 (454)
T ss_dssp CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCT-TCCE
T ss_pred CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCC-CCCE
Confidence 45555555555553 3332 2556666666666552 2211 1577888888888774 66 477777 7888
Q ss_pred EEcccCcCcccccccccCCccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCcc
Q 020203 195 LYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFG 274 (329)
Q Consensus 195 L~l~~n~l~~~~p~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 274 (329)
|++++|.+++ +|..+. +|++|++++|.+++. + .++.+++|++|++++|.+++.+. .+++|++|++++|+++
T Consensus 158 L~l~~N~l~~-lp~~~~--~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDLPP--SLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPD---LPLSLESIVAGNNILE- 228 (454)
T ss_dssp EECCSSCCSC-CCCCCT--TCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCS-
T ss_pred EECCCCcCcc-cCCCcc--cccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCC---CcCcccEEECcCCcCC-
Confidence 8888888774 554332 778888888888774 3 47788888888888888876332 2357888888888887
Q ss_pred ccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCC
Q 020203 275 SIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNR 318 (329)
Q Consensus 275 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~ 318 (329)
.+|. ++.+++|++|++++|++++ +|. .+++|+.+++++|.
T Consensus 229 ~lp~-~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 229 ELPE-LQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNY 268 (454)
T ss_dssp SCCC-CTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSC
T ss_pred cccc-cCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCc
Confidence 6774 7888889999999988886 443 23566667776665
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.6e-25 Score=201.80 Aligned_cols=233 Identities=20% Similarity=0.284 Sum_probs=169.6
Q ss_pred CcEEEEEeCCCCCCee----cCcCCCCCCCCCEEeCCCC--CCCCCCChhhh-------cCCCCCCEEeccCccCCc---
Q 020203 68 NRINSLTIFAGDLPGQ----IPPEVGDLPYLETLMFHKL--PSLTGPIQPAI-------AKLKNLKTLRISWTNISG--- 131 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~--~~l~~~~~~~l-------~~l~~L~~L~Ls~n~l~~--- 131 (329)
.+++.|++++|.+.+. ++..+..+++|++|+++++ +.+.+.+|..+ ..+++|++|++++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 4578888888888765 3345778888888888874 34555666555 678888888888888886
Q ss_pred -cCcccccCCCCCCEEEccCCcCCCCCCccC----CCC---------CCCCEEecccccCc-ccCC---hhhhhcCCCCC
Q 020203 132 -PVPDFISQLTNLTFLELSFNNLSGTIPGSL----SKL---------QKLGALHLDRNKLT-GSIP---ESFGTFTGSIP 193 (329)
Q Consensus 132 -~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l----~~l---------~~L~~L~l~~n~l~-~~~~---~~~~~~~~~L~ 193 (329)
.++..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|.++ +.++ ..+..++ +|+
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~ 190 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR-LLH 190 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCC
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC-CcC
Confidence 466677888888888888888864333333 333 78888888888886 3344 4566676 888
Q ss_pred eEEcccCcCcc-----cccccccCC-ccCEEEeeCCcCc----cchhhhccCCCCCCEEEccCccceee----c-CCC--
Q 020203 194 DLYLSHNQLSG-----KIPASLGSM-DFNTIDLSRNKLE----GDASFLFGLNKTTQRIDVSRNLLEFN----L-SKV-- 256 (329)
Q Consensus 194 ~L~l~~n~l~~-----~~p~~l~~~-~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~-~~~-- 256 (329)
+|++++|.++. ..+..+... +|+.|++++|.++ +.++..+..+++|++|++++|.+++. + ..+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 88888888873 233355555 7888888888886 55667778888888888888888754 1 222
Q ss_pred CCCCCCCEEEccCCcCcc----ccchhh-cCCCCCCEEEeecCcCcccCC
Q 020203 257 EFPQSLTNLDLNHNKIFG----SIPAQI-TSLENLGFLNVSYNRLCGPIP 301 (329)
Q Consensus 257 ~~~~~L~~L~l~~n~l~~----~~p~~~-~~l~~L~~L~l~~n~l~~~~p 301 (329)
..+++|++|++++|++++ .+|..+ .++++|++|++++|++++..+
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 236788888888888886 477776 567888888888888887654
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=7.7e-24 Score=186.44 Aligned_cols=222 Identities=18% Similarity=0.206 Sum_probs=177.6
Q ss_pred CCCEEeCCCCCCCCCCChh---hhcCCCCCCEEeccCccCCccCcccc--cCCCCCCEEEccCCcCCCCCC----ccCCC
Q 020203 93 YLETLMFHKLPSLTGPIQP---AIAKLKNLKTLRISWTNISGPVPDFI--SQLTNLTFLELSFNNLSGTIP----GSLSK 163 (329)
Q Consensus 93 ~L~~L~l~~~~~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p----~~l~~ 163 (329)
.++.+.+.+ ..+....-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|++++..+ ..+..
T Consensus 65 ~l~~l~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGA-AQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECS-CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeC-CcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 467788877 455432111 12235779999999999998898888 899999999999999997655 34567
Q ss_pred CCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCccc--cccc--ccCC-ccCEEEeeCCcCccchhh---hccC
Q 020203 164 LQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGK--IPAS--LGSM-DFNTIDLSRNKLEGDASF---LFGL 235 (329)
Q Consensus 164 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~p~~--l~~~-~L~~L~l~~n~l~~~~~~---~~~~ 235 (329)
+++|++|++++|.+.+..+..+..++ +|++|++++|++.+. ++.. +..+ +|++|++++|+++..... .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFP-ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCT-TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCC-CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 89999999999999977778888888 999999999998753 2222 2455 899999999999754332 4578
Q ss_pred CCCCCEEEccCccceeecC-CCCC---CCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCc
Q 020203 236 NKTTQRIDVSRNLLEFNLS-KVEF---PQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGY 311 (329)
Q Consensus 236 ~~~L~~L~l~~n~l~~~~~-~~~~---~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~ 311 (329)
+++|++|++++|.+++..| .+.. +++|++|++++|+++ .+|..+. ++|+.|++++|++++. |....+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccE
Confidence 8999999999999998744 3333 379999999999999 7787764 7999999999999974 55678999999
Q ss_pred ccccCCCCC
Q 020203 312 TEYFHNRCL 320 (329)
Q Consensus 312 l~l~~n~~~ 320 (329)
+++++|+.-
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 999999853
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=4.1e-23 Score=174.95 Aligned_cols=196 Identities=19% Similarity=0.217 Sum_probs=153.2
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCC-CCCCChhhhcCCCCCCEEeccC-ccCCccCcccccCCCCCCE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPS-LTGPIQPAIAKLKNLKTLRISW-TNISGPVPDFISQLTNLTF 145 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~ 145 (329)
..++.+++++|.+.+..+..+..+++|++|++++ +. ++...+..|.++++|++|++++ |.+++..+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~-n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI-DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEEC-CSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCC-CCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4789999999999988777899999999999999 65 7776667899999999999999 9999666678999999999
Q ss_pred EEccCCcCCCCCCccCCCCCCCC---EEecccc-cCcccCChhhhhcCCCCC-eEEcccCcCccccccc-ccCCccCEEE
Q 020203 146 LELSFNNLSGTIPGSLSKLQKLG---ALHLDRN-KLTGSIPESFGTFTGSIP-DLYLSHNQLSGKIPAS-LGSMDFNTID 219 (329)
Q Consensus 146 L~l~~n~l~~~~p~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~p~~-l~~~~L~~L~ 219 (329)
|++++|++++ +|. +..+++|+ +|++++| .+++..+..+..+. +|+ +|++++|+++ .+|.. +...+|+.|+
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-NETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-SSEEEEECCSCCCC-EECTTTTTTCEEEEEE
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh-cceeEEEcCCCCCc-ccCHhhcCCCCCCEEE
Confidence 9999999995 776 88888888 9999999 88865556677787 899 9999999888 45543 3333778888
Q ss_pred eeCCc-CccchhhhccCC-CCCCEEEccCccceeecCCCCCCCCCCEEEccCC
Q 020203 220 LSRNK-LEGDASFLFGLN-KTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHN 270 (329)
Q Consensus 220 l~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 270 (329)
+++|. ++...+..|..+ ++|+.|++++|.+++.++. .+++|+.|+++++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 88884 776666666666 6666666666666543322 3445555555544
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=5.4e-24 Score=187.43 Aligned_cols=223 Identities=20% Similarity=0.193 Sum_probs=175.3
Q ss_pred cEEEEEeCCCCCCeecCc---CCCCCCCCCEEeCCCCCCCCCCChhhh--cCCCCCCEEeccCccCCccCc----ccccC
Q 020203 69 RINSLTIFAGDLPGQIPP---EVGDLPYLETLMFHKLPSLTGPIQPAI--AKLKNLKTLRISWTNISGPVP----DFISQ 139 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~---~l~~l~~L~~L~l~~~~~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~----~~~~~ 139 (329)
+++.+.+....+....-. .+..+++|++|++++ +.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLED-LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEES-CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeC-CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 456667766665432110 122345699999999 88998888887 889999999999999997555 34457
Q ss_pred CCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCccc--C--ChhhhhcCCCCCeEEcccCcCcccccc---c-cc
Q 020203 140 LTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGS--I--PESFGTFTGSIPDLYLSHNQLSGKIPA---S-LG 211 (329)
Q Consensus 140 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~--~~~~~~~~~~L~~L~l~~n~l~~~~p~---~-l~ 211 (329)
+++|++|++++|++.+..+..++.+++|++|++++|++.+. + +..+..++ +|++|++++|+++. ++. . +.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCc-hHHHHHHHHh
Confidence 89999999999999988888999999999999999997643 2 22235666 89999999999973 332 2 34
Q ss_pred CC-ccCEEEeeCCcCccchhhhccCC---CCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCC
Q 020203 212 SM-DFNTIDLSRNKLEGDASFLFGLN---KTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLG 287 (329)
Q Consensus 212 ~~-~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 287 (329)
.+ +|++|++++|.+++..|..+..+ ++|++|++++|.++..+..+ .++|++|++++|++++ +|. +..+++|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~-~~~-~~~l~~L~ 297 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNR-APQ-PDELPEVD 297 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCS-CCC-TTSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCC-Cch-hhhCCCcc
Confidence 44 89999999999999877666665 69999999999999554434 3799999999999995 343 57889999
Q ss_pred EEEeecCcCcc
Q 020203 288 FLNVSYNRLCG 298 (329)
Q Consensus 288 ~L~l~~n~l~~ 298 (329)
.|++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999874
No 81
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.9e-22 Score=186.54 Aligned_cols=229 Identities=21% Similarity=0.260 Sum_probs=113.1
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|.+.+ +| ++..+++|++|++++ +.+++ +|.. ..+|++|++++|.+.+ +| .++.+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~-N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN-NSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS-SCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC-CcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 356677777777765 55 477777777777777 56665 3322 2466666666666663 44 466666666666
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCccccccccc----------------
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLG---------------- 211 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~---------------- 211 (329)
+++|++++ +|... ++|++|++++|.+. .+|. +..++ +|++|++++|.+++ +|..+.
T Consensus 202 l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~-~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 202 ADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLP-FLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp CCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCT-TCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCC
T ss_pred CCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCC-CCCEEECCCCcCCc-ccccccccCEEECCCCcccccC
Confidence 66666653 22211 24444444444444 3442 44444 55555555555442 222110
Q ss_pred -C-CccCEEEeeCCcCccch--hhh-------------ccCC-CCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCc
Q 020203 212 -S-MDFNTIDLSRNKLEGDA--SFL-------------FGLN-KTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIF 273 (329)
Q Consensus 212 -~-~~L~~L~l~~n~l~~~~--~~~-------------~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 273 (329)
. .+|++|++++|.+++.. +.. +... ++|++|++++|.+++.+. .+++|++|++++|+++
T Consensus 274 ~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 274 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLA 350 (454)
T ss_dssp CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS
T ss_pred cccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccc---cCCcCCEEECCCCccc
Confidence 0 13455555555554421 100 0011 245555555555554221 1356666666666666
Q ss_pred cccchhhcCCCCCCEEEeecCcCcc--cCCC-CCcc-------------CccCcccccCCCCC
Q 020203 274 GSIPAQITSLENLGFLNVSYNRLCG--PIPV-GGKL-------------QSFGYTEYFHNRCL 320 (329)
Q Consensus 274 ~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~-~~~l-------------~~L~~l~l~~n~~~ 320 (329)
.+|. .+++|++|++++|++++ .+|. .+.+ ++|+.+++++|+..
T Consensus 351 -~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 351 -EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp -CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred -cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 4554 35677777777777776 4554 2444 56777777777654
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.8e-22 Score=177.44 Aligned_cols=191 Identities=20% Similarity=0.302 Sum_probs=97.7
Q ss_pred CCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEE
Q 020203 91 LPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGAL 170 (329)
Q Consensus 91 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 170 (329)
+++|++|++++ +.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|++++ ++ .+..+++|++|
T Consensus 40 l~~L~~L~l~~-~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFG-TGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTT-SCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred cCCcCEEEeeC-CCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEE
Confidence 44455555555 33333 22 34455555555555555552 222 5555555555555555542 22 34555555555
Q ss_pred ecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccc
Q 020203 171 HLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLL 249 (329)
Q Consensus 171 ~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 249 (329)
++++|.+++ ++. +..++ +|++|++++|.+++..+ +..+ +|+.|++++|.+++..+ +..+++|++|++++|.+
T Consensus 113 ~l~~n~l~~-~~~-l~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQITD-VTP-LAGLS-NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCCC-CGG-GTTCT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCC-chh-hcCCC-CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 555555542 222 44444 55555555555553221 3333 55555555555554333 45555566666666655
Q ss_pred eeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcc
Q 020203 250 EFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCG 298 (329)
Q Consensus 250 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 298 (329)
++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++
T Consensus 186 ~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 54332 444556666666666665332 25566666666666666654
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=7.4e-23 Score=179.93 Aligned_cols=205 Identities=20% Similarity=0.227 Sum_probs=172.2
Q ss_pred eCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccC
Q 020203 98 MFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKL 177 (329)
Q Consensus 98 ~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 177 (329)
.+.. ..++..+ ....+++|++|++++|.+. .++ .+..+++|++|++++|++++. +. +..+++|++|++++|.+
T Consensus 25 ~l~~-~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 25 AAGK-SNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HTTC-SSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCC
T ss_pred HhCC-CCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcC
Confidence 3444 4444432 3456889999999999998 455 588999999999999999854 44 89999999999999999
Q ss_pred cccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCC
Q 020203 178 TGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKV 256 (329)
Q Consensus 178 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 256 (329)
.+ ++ .+..+. +|++|++++|.+++ ++. +..+ +|++|++++|.+++..+ +..+++|++|++++|.+++..+ +
T Consensus 98 ~~-~~-~~~~l~-~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l 169 (308)
T 1h6u_A 98 KN-VS-AIAGLQ-SIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-L 169 (308)
T ss_dssp SC-CG-GGTTCT-TCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred CC-ch-hhcCCC-CCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-h
Confidence 84 44 688888 99999999999986 443 7777 99999999999998765 8889999999999999997555 7
Q ss_pred CCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCCCC
Q 020203 257 EFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCL 320 (329)
Q Consensus 257 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~ 320 (329)
..+++|++|++++|++++. +. +..+++|++|++++|++.+.. ....+++|+.+++++|+.-
T Consensus 170 ~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEE
T ss_pred cCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeee
Confidence 7889999999999999854 43 789999999999999999765 4788999999999999853
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=9.8e-25 Score=194.13 Aligned_cols=253 Identities=19% Similarity=0.233 Sum_probs=176.6
Q ss_pred CCcCccceEecCCCCcEEEEEeCCCCCCeecCcCCCCC--CCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCc
Q 020203 54 DCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDL--PYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISG 131 (329)
Q Consensus 54 ~~c~~~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l--~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 131 (329)
-|..|+++.|+. ..++.++++++.+. +..+..+ ++++.|++++ +.+.+..+. +..+++|++|++++|.+++
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~-n~l~~~~~~-~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPR-SFMDQPLAE-HFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTT-CEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCC-ccccccchh-hccCCCCCEEEccCCCcCH
Confidence 455688877753 45778888887765 2334445 6788888888 677766554 5568888888888888775
Q ss_pred c-CcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccc-cCccc-CChhhhhcCCCCCeEEcccC-cCccc-c
Q 020203 132 P-VPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRN-KLTGS-IPESFGTFTGSIPDLYLSHN-QLSGK-I 206 (329)
Q Consensus 132 ~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~~L~~L~l~~n-~l~~~-~ 206 (329)
. ++..+..+++|++|++++|++++..+..++.+++|++|++++| .+++. ++..+..++ +|++|++++| .+++. +
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~ 186 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS-RLDELNLSWCFDFTEKHV 186 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT-TCCEEECCCCTTCCHHHH
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC-CCCEEcCCCCCCcChHHH
Confidence 4 7777788888888888888887777777888888888888888 56653 566677777 8888888888 77753 3
Q ss_pred cccccCC--ccCEEEeeCC--cCc-cchhhhccCCCCCCEEEccCcc-cee-ecCCCCCCCCCCEEEccCCc-Cccccch
Q 020203 207 PASLGSM--DFNTIDLSRN--KLE-GDASFLFGLNKTTQRIDVSRNL-LEF-NLSKVEFPQSLTNLDLNHNK-IFGSIPA 278 (329)
Q Consensus 207 p~~l~~~--~L~~L~l~~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~~~L~~L~l~~n~-l~~~~p~ 278 (329)
+..+..+ +|++|++++| .++ +..+..+..+++|++|++++|. +++ .++.+..+++|++|++++|. +......
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 266 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH
Confidence 4444444 6888888888 454 4456667778888888888887 553 33345666788888888884 3322233
Q ss_pred hhcCCCCCCEEEeecCcCcccCCCC--Ccc-CccCcccccCCCC
Q 020203 279 QITSLENLGFLNVSYNRLCGPIPVG--GKL-QSFGYTEYFHNRC 319 (329)
Q Consensus 279 ~~~~l~~L~~L~l~~n~l~~~~p~~--~~l-~~L~~l~l~~n~~ 319 (329)
.+..+++|+.|++++| ++.. ..+ ..+..+++.+|..
T Consensus 267 ~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp GGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCS
T ss_pred HHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccC
Confidence 5677888888888887 3321 223 2366666766653
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=6.8e-25 Score=199.05 Aligned_cols=236 Identities=17% Similarity=0.164 Sum_probs=187.5
Q ss_pred cCcCCCCCCCCCEEeCCCCCCCCCCChh----hhcCCCCCCEEeccCcc---CCccCcccc-------cCCCCCCEEEcc
Q 020203 84 IPPEVGDLPYLETLMFHKLPSLTGPIQP----AIAKLKNLKTLRISWTN---ISGPVPDFI-------SQLTNLTFLELS 149 (329)
Q Consensus 84 ~~~~l~~l~~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~Ls~n~---l~~~~~~~~-------~~l~~L~~L~l~ 149 (329)
++..+..+++|++|++++ +.+....+. .+..+++|++|++++|. +.+.+|..+ ..+++|++|+++
T Consensus 24 l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSG-NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTT-SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCC-CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455667889999999999 777766443 46789999999999964 445556554 789999999999
Q ss_pred CCcCCC----CCCccCCCCCCCCEEecccccCcccCChhhhh----c---------CCCCCeEEcccCcCc-cccc---c
Q 020203 150 FNNLSG----TIPGSLSKLQKLGALHLDRNKLTGSIPESFGT----F---------TGSIPDLYLSHNQLS-GKIP---A 208 (329)
Q Consensus 150 ~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----~---------~~~L~~L~l~~n~l~-~~~p---~ 208 (329)
+|.+++ .+|..+..+++|++|++++|.+++..+..+.. . + +|++|++++|.++ +.++ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC-CCcEEECCCCCCCcHHHHHHHH
Confidence 999997 36778889999999999999997544444443 3 6 9999999999997 3344 3
Q ss_pred cccCC-ccCEEEeeCCcCcc-----chhhhccCCCCCCEEEccCccce----eec-CCCCCCCCCCEEEccCCcCccc--
Q 020203 209 SLGSM-DFNTIDLSRNKLEG-----DASFLFGLNKTTQRIDVSRNLLE----FNL-SKVEFPQSLTNLDLNHNKIFGS-- 275 (329)
Q Consensus 209 ~l~~~-~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~-~~~~~~~~L~~L~l~~n~l~~~-- 275 (329)
.+... +|++|++++|.++. ..+..+..+++|++|++++|.++ ..+ ..+..+++|++|++++|++++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 45455 89999999999983 34447889999999999999995 222 3356778999999999999865
Q ss_pred --cchhhc--CCCCCCEEEeecCcCcc----cCCCC--CccCccCcccccCCCCCC
Q 020203 276 --IPAQIT--SLENLGFLNVSYNRLCG----PIPVG--GKLQSFGYTEYFHNRCLC 321 (329)
Q Consensus 276 --~p~~~~--~l~~L~~L~l~~n~l~~----~~p~~--~~l~~L~~l~l~~n~~~~ 321 (329)
++..+. .+++|+.|++++|++++ .+|.. .++++|+.|++++|+.-.
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 567774 48999999999999998 46653 568999999999998643
No 86
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=2.1e-22 Score=190.04 Aligned_cols=206 Identities=20% Similarity=0.285 Sum_probs=140.9
Q ss_pred CCCCCCCCCc-----Cccce-EecCCCCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCC
Q 020203 47 ASWNPKTDCC-----DWYCV-TCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLK 120 (329)
Q Consensus 47 ~~w~~~~~~c-----~~~gv-~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 120 (329)
.+|....++| .|.++ .|.. .+++.++++++++.+ +|..+ +++|++|++++ |.++ .+| ..+++|+
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~-N~l~-~ip---~~l~~L~ 103 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQ-NALI-SLP---ELPASLE 103 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCS-SCCS-CCC---CCCTTCC
T ss_pred HHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcC-CCCc-ccc---cccCCCC
Confidence 3465556677 68888 7863 478999999999987 77755 37899999988 7777 455 4578888
Q ss_pred EEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccC
Q 020203 121 TLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHN 200 (329)
Q Consensus 121 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 200 (329)
+|++++|.+++ +|. +.. +|++|++++|++++ +|. .+++|+.|++++|.+++ +|. .+. +|++|++++|
T Consensus 104 ~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~-~L~~L~Ls~N 170 (571)
T 3cvr_A 104 YLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPT-SLEVLSVRNN 170 (571)
T ss_dssp EEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCT-TCCEEECCSS
T ss_pred EEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCC-CcCEEECCCC
Confidence 89999888885 666 554 88888888888885 665 57888888888888874 665 344 7888888888
Q ss_pred cCcccccccccCCccCEEEeeCCcCccchhhhccCCCCC-------CEEEccCccceeecCCCCCCCCCCEEEccCCcCc
Q 020203 201 QLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTT-------QRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIF 273 (329)
Q Consensus 201 ~l~~~~p~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 273 (329)
.+++ +|. +. .+|+.|++++|.++..+. +.. +| +.|++++|.++..+..+..+++|++|++++|.++
T Consensus 171 ~L~~-lp~-l~-~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 171 QLTF-LPE-LP-ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CCSC-CCC-CC-TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred CCCC-cch-hh-CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 8875 665 54 577888888887774333 332 44 5555555555543333333455555555555555
Q ss_pred cccchhhcC
Q 020203 274 GSIPAQITS 282 (329)
Q Consensus 274 ~~~p~~~~~ 282 (329)
+.+|..+..
T Consensus 244 ~~~p~~l~~ 252 (571)
T 3cvr_A 244 SRIRESLSQ 252 (571)
T ss_dssp HHHHHHHHH
T ss_pred CcCHHHHHH
Confidence 555554443
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=6.2e-22 Score=177.19 Aligned_cols=218 Identities=18% Similarity=0.116 Sum_probs=111.7
Q ss_pred CCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCc-ccccCCCCCCE-EEccCCcCCCCCCccCCCCCCCCE
Q 020203 92 PYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVP-DFISQLTNLTF-LELSFNNLSGTIPGSLSKLQKLGA 169 (329)
Q Consensus 92 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~l~~n~l~~~~p~~l~~l~~L~~ 169 (329)
+++++|++++ |.++...+.+|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+..|+++...|..|..+++|++
T Consensus 30 ~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 3556666666 55554434455666666666666666543333 24555555543 344455555444555566666666
Q ss_pred EecccccCcccCChhhhhcCCCCCeEEccc-CcCcccccccccCC--ccCEEEeeCCcCccchhhhccCCCCCCEEEccC
Q 020203 170 LHLDRNKLTGSIPESFGTFTGSIPDLYLSH-NQLSGKIPASLGSM--DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSR 246 (329)
Q Consensus 170 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~p~~l~~~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 246 (329)
|++++|++....+..+.... ++..+++.+ +.+....+..|... .++.|++++|+++...+..|. ..+++++++.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~-~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~ 186 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSL-QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSD 186 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBS-SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTT
T ss_pred ccccccccccCCchhhcccc-hhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhcc
Confidence 66666666533333333333 455555544 33332222334433 455566666666554444332 34556666653
Q ss_pred -ccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCCCCccCccCccccc
Q 020203 247 -NLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYF 315 (329)
Q Consensus 247 -n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~ 315 (329)
|.++...+. +..+++|++|++++|+++ .+|. ..+.+|++|.+.++.-...+|....+++|+.+++.
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred CCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 334433222 355556666666666665 3443 12445555555554444455555556666665554
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=2.9e-21 Score=172.85 Aligned_cols=235 Identities=16% Similarity=0.140 Sum_probs=185.8
Q ss_pred cCccceEecCC---------CCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCCh-hhhcCCCCCCE-Eec
Q 020203 56 CDWYCVTCDLT---------TNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQ-PAIAKLKNLKT-LRI 124 (329)
Q Consensus 56 c~~~gv~c~~~---------~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~-L~L 124 (329)
|.+..|.|+.. ...++.|++++|.++...+..|.++++|++|++++ |.+.+.+| ..|.+++++++ +.+
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ-NDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEEC-CTTCCEECTTSBCSCTTCCEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcC-CCCCCccChhHhhcchhhhhhhcc
Confidence 78888999642 24689999999999876556899999999999999 77766554 46788988876 667
Q ss_pred cCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEeccc-ccCcccCChhhhhcCCCCCeEEcccCcCc
Q 020203 125 SWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDR-NKLTGSIPESFGTFTGSIPDLYLSHNQLS 203 (329)
Q Consensus 125 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 203 (329)
.+|++....|..|..+++|++|++++|+++...+..+....++..+++.+ +.+....+..+......++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 77899977788899999999999999999966666666777888899866 56664444456665547899999999999
Q ss_pred ccccccccCCccCEEEeeC-CcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcC
Q 020203 204 GKIPASLGSMDFNTIDLSR-NKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITS 282 (329)
Q Consensus 204 ~~~p~~l~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 282 (329)
...+..+...+++++++.+ |.++..++..|+.+++|++|++++|.++..++. .+.+|+.|.+.++.--..+| .+..
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~ 244 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEK 244 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-Cchh
Confidence 5444455545999999985 667777778899999999999999999966543 35678888877765444777 4788
Q ss_pred CCCCCEEEeecC
Q 020203 283 LENLGFLNVSYN 294 (329)
Q Consensus 283 l~~L~~L~l~~n 294 (329)
+++|+.++++++
T Consensus 245 l~~L~~l~l~~~ 256 (350)
T 4ay9_X 245 LVALMEASLTYP 256 (350)
T ss_dssp CCSCCEEECSCH
T ss_pred CcChhhCcCCCC
Confidence 999999999875
No 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=1.4e-23 Score=194.56 Aligned_cols=180 Identities=17% Similarity=0.211 Sum_probs=113.0
Q ss_pred cEEEEEeCCCCCCe----ecCcCCCCCCCCCEEeCCCCCCCCCCChhhhc-----CCCCCCEEeccCccCCcc----Ccc
Q 020203 69 RINSLTIFAGDLPG----QIPPEVGDLPYLETLMFHKLPSLTGPIQPAIA-----KLKNLKTLRISWTNISGP----VPD 135 (329)
Q Consensus 69 ~v~~l~l~~~~l~~----~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~----~~~ 135 (329)
+++.+++++|.+.. .++..+..+++|++|++++ +.+++..+..+. ..++|++|++++|.+++. ++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD-NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCC-CcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 57888888888773 4577778888888888888 666544333332 245688888888877753 344
Q ss_pred cccCCCCCCEEEccCCcCCCCCCccCC-----CCCCCCEEecccccCccc----CChhhhhcCCCCCeEEcccCcCcccc
Q 020203 136 FISQLTNLTFLELSFNNLSGTIPGSLS-----KLQKLGALHLDRNKLTGS----IPESFGTFTGSIPDLYLSHNQLSGKI 206 (329)
Q Consensus 136 ~~~~l~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~ 206 (329)
.+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+...+ +|++|++++|.+++..
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECCSSBCHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC-CccEEeccCCcCChHH
Confidence 555667777777777776543332222 245777777777777642 455555565 7777777777665432
Q ss_pred c----ccc-cCC-ccCEEEeeCCcCccc----hhhhccCCCCCCEEEccCccce
Q 020203 207 P----ASL-GSM-DFNTIDLSRNKLEGD----ASFLFGLNKTTQRIDVSRNLLE 250 (329)
Q Consensus 207 p----~~l-~~~-~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~ 250 (329)
. +.+ ... +|++|++++|.++.. .+..+..+++|++|++++|.++
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 1 111 123 677777777766653 3444555666677777666664
No 90
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=1e-20 Score=180.55 Aligned_cols=205 Identities=25% Similarity=0.297 Sum_probs=125.4
Q ss_pred cEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCc-----------------
Q 020203 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISG----------------- 131 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~----------------- 131 (329)
+++.|++++|.+.. +|. .+++|++|++++ |.+++ +|. .+++|++|++++|.+++
T Consensus 62 ~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~-N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~ 132 (622)
T 3g06_A 62 HITTLVIPDNNLTS-LPA---LPPELRTLEVSG-NQLTS-LPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ 132 (622)
T ss_dssp TCSEEEECSCCCSC-CCC---CCTTCCEEEECS-CCCSC-CCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSC
T ss_pred CCcEEEecCCCCCC-CCC---cCCCCCEEEcCC-CcCCc-CCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCC
Confidence 45556666665542 333 345555555555 44443 232 34455555555554442
Q ss_pred --cCcccccCCCCCCEEEccCCcCCCCCCccCCC---C--------------CCCCEEecccccCcccCChhhhhcCCCC
Q 020203 132 --PVPDFISQLTNLTFLELSFNNLSGTIPGSLSK---L--------------QKLGALHLDRNKLTGSIPESFGTFTGSI 192 (329)
Q Consensus 132 --~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~---l--------------~~L~~L~l~~n~l~~~~~~~~~~~~~~L 192 (329)
.+|.. +++|++|++++|++++ +|..+.. + ++|+.|++++|.++ .+|.. .. +|
T Consensus 133 l~~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~-~l~~~---~~-~L 203 (622)
T 3g06_A 133 LTSLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPTL---PS-EL 203 (622)
T ss_dssp CSCCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCCC---CT-TC
T ss_pred CCcCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-CCCCc---cc-hh
Confidence 23321 2556666666666552 2222111 1 34444444444444 22221 12 44
Q ss_pred CeEEcccCcCcccccccccCCccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcC
Q 020203 193 PDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKI 272 (329)
Q Consensus 193 ~~L~l~~n~l~~~~p~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l 272 (329)
+.|++++|.++ .+|..+ .+|+.|++++|.+++.+ ..+++|++|++++|.++..+. .+++|++|++++|++
T Consensus 204 ~~L~L~~N~l~-~l~~~~--~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 204 YKLWAYNNRLT-SLPALP--SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQL 273 (622)
T ss_dssp CEEECCSSCCS-SCCCCC--TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC
T ss_pred hEEECcCCccc-ccCCCC--CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCC
Confidence 55555555544 233211 26889999999988754 456899999999999995444 568999999999999
Q ss_pred ccccchhhcCCCCCCEEEeecCcCcccCCC
Q 020203 273 FGSIPAQITSLENLGFLNVSYNRLCGPIPV 302 (329)
Q Consensus 273 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 302 (329)
+ .+|..+..+++|+.|++++|++++.+|.
T Consensus 274 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 274 T-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp C-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred C-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 9 8899999999999999999999987664
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.1e-21 Score=160.79 Aligned_cols=184 Identities=21% Similarity=0.246 Sum_probs=101.6
Q ss_pred CcCccceEecCCCCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCc
Q 020203 55 CCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVP 134 (329)
Q Consensus 55 ~c~~~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 134 (329)
.|.|.++.|+. +++. .+|..+ .+++++|++++ +.+++..+..+.++++|++|++++|.+.+..+
T Consensus 6 ~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 6 SCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp EEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred EECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCC-CccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 37788887763 2221 123222 23566666666 55555444445556666666666666654333
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-
Q 020203 135 DFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM- 213 (329)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~- 213 (329)
..+..+++|++|++++|++++..+..+..+++|++|++++|.++ +..+..+..+
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------------~~~~~~~~~l~ 124 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-------------------------SLPDGVFDKLT 124 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------CCCTTTTTTCT
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-------------------------ccCHhHhccCC
Confidence 34455555555555555555333333445555555555555544 3222233333
Q ss_pred ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCC
Q 020203 214 DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLEN 285 (329)
Q Consensus 214 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~ 285 (329)
+|++|++++|.+++..+..+..+++|++|++++|.+.+. .++|++|+++.|+++|.+|..++.++.
T Consensus 125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 555555555555554444555566666666666655533 246777888888888888877765543
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=4.3e-23 Score=185.60 Aligned_cols=231 Identities=18% Similarity=0.229 Sum_probs=181.1
Q ss_pred CcEEEEEeCCCCCCeecC----cCCCCCC-CCCEEeCCCCCCCCCCChhhhcCC-----CCCCEEeccCccCCccCccc-
Q 020203 68 NRINSLTIFAGDLPGQIP----PEVGDLP-YLETLMFHKLPSLTGPIQPAIAKL-----KNLKTLRISWTNISGPVPDF- 136 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~~~~l~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~~~~- 136 (329)
.+++.+++++|.+.+..+ ..+..++ +|++|++++ +.+++..+..+..+ ++|++|++++|.+++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG-NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCS-SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcC-CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 459999999999987655 6677888 899999999 88988877777765 99999999999999766654
Q ss_pred ---ccCC-CCCCEEEccCCcCCCCCCccC----CC-CCCCCEEecccccCcccCChh----hhhcCCCCCeEEcccCcCc
Q 020203 137 ---ISQL-TNLTFLELSFNNLSGTIPGSL----SK-LQKLGALHLDRNKLTGSIPES----FGTFTGSIPDLYLSHNQLS 203 (329)
Q Consensus 137 ---~~~l-~~L~~L~l~~n~l~~~~p~~l----~~-l~~L~~L~l~~n~l~~~~~~~----~~~~~~~L~~L~l~~n~l~ 203 (329)
+..+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++..... +.....+|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 4444 899999999999986655443 34 369999999999998644433 3444348999999999998
Q ss_pred cccccccc----C--CccCEEEeeCCcCccc----hhhhccC-CCCCCEEEccCccceeecC-----CCCCCCCCCEEEc
Q 020203 204 GKIPASLG----S--MDFNTIDLSRNKLEGD----ASFLFGL-NKTTQRIDVSRNLLEFNLS-----KVEFPQSLTNLDL 267 (329)
Q Consensus 204 ~~~p~~l~----~--~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~~-----~~~~~~~L~~L~l 267 (329)
+..+..++ . .+|++|++++|.++.. ++..+.. .++|++|++++|.+++... .+..+++|++|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 76665443 2 2799999999999873 3444544 5699999999999986433 2466789999999
Q ss_pred cCCcCccc-------cchhhcCCCCCCEEEeecCcCccc
Q 020203 268 NHNKIFGS-------IPAQITSLENLGFLNVSYNRLCGP 299 (329)
Q Consensus 268 ~~n~l~~~-------~p~~~~~l~~L~~L~l~~n~l~~~ 299 (329)
++|.+.+. ++..+..+++|+.|++++|++.+.
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 99995432 334567788899999999999766
No 93
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=9e-24 Score=195.87 Aligned_cols=251 Identities=15% Similarity=0.082 Sum_probs=182.9
Q ss_pred CcEEEEEeCCCCCCe----ecCcCCCCCCCCCEEeCCCCCCCCCCChhhh-cCCC----CCCEEeccCccCCc----cCc
Q 020203 68 NRINSLTIFAGDLPG----QIPPEVGDLPYLETLMFHKLPSLTGPIQPAI-AKLK----NLKTLRISWTNISG----PVP 134 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~----~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l-~~l~----~L~~L~Ls~n~l~~----~~~ 134 (329)
.+++.++++++.+.+ .++..+..+++|++|++++ +.+....+..+ ..++ +|++|++++|.++. .++
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS-NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTT-CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCC-CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 357788888888764 3455667778888888888 67765444333 3344 68888888888873 457
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCcc-----CCCCCCCCEEecccccCcccC----ChhhhhcCCCCCeEEcccCcCccc
Q 020203 135 DFISQLTNLTFLELSFNNLSGTIPGS-----LSKLQKLGALHLDRNKLTGSI----PESFGTFTGSIPDLYLSHNQLSGK 205 (329)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~l~~~~p~~-----l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~~L~~L~l~~n~l~~~ 205 (329)
..+..+++|++|++++|.+++..+.. ....++|++|++++|.+++.. +..+..++ +|++|++++|.+.+.
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP-DFKELTVSNNDINEA 185 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT-TCCEEECCSSBCHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC-CCCEEECcCCCcchH
Confidence 77888888888888888876433322 223567888999888887533 55566667 899999999988765
Q ss_pred ccccccC-----C-ccCEEEeeCCcCccc----hhhhccCCCCCCEEEccCccceeec-----CC-CCCCCCCCEEEccC
Q 020203 206 IPASLGS-----M-DFNTIDLSRNKLEGD----ASFLFGLNKTTQRIDVSRNLLEFNL-----SK-VEFPQSLTNLDLNH 269 (329)
Q Consensus 206 ~p~~l~~-----~-~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~-----~~-~~~~~~L~~L~l~~ 269 (329)
.+..+.. . +|++|++++|.++.. .+..+..+++|++|++++|.+++.. +. ....++|++|++++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 4444432 2 789999999998874 4667778899999999999887532 11 23467899999999
Q ss_pred CcCccc----cchhhcCCCCCCEEEeecCcCcccCCC-C-----CccCccCcccccCCCCC
Q 020203 270 NKIFGS----IPAQITSLENLGFLNVSYNRLCGPIPV-G-----GKLQSFGYTEYFHNRCL 320 (329)
Q Consensus 270 n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~-~-----~~l~~L~~l~l~~n~~~ 320 (329)
|++++. ++..+..+++|++|++++|++.+..+. . ...++|+.+++++|..-
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 999854 677788899999999999998754322 1 23368999999999743
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2e-22 Score=179.16 Aligned_cols=219 Identities=18% Similarity=0.220 Sum_probs=181.4
Q ss_pred CCCEEeCCCCCCCCCCChhhhcCC--CCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCC-CCccCCCCCCCCE
Q 020203 93 YLETLMFHKLPSLTGPIQPAIAKL--KNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGT-IPGSLSKLQKLGA 169 (329)
Q Consensus 93 ~L~~L~l~~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~ 169 (329)
.++.+++++ +.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~-~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTG-KNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTT-CBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeecccc-ccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 478899998 6665 5667777 8999999999999976665 66799999999999999865 7778899999999
Q ss_pred EecccccCcccCChhhhhcCCCCCeEEcccC-cCccc-ccccccCC-ccCEEEeeCC-cCccc-hhhhccCCC-CCCEEE
Q 020203 170 LHLDRNKLTGSIPESFGTFTGSIPDLYLSHN-QLSGK-IPASLGSM-DFNTIDLSRN-KLEGD-ASFLFGLNK-TTQRID 243 (329)
Q Consensus 170 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~p~~l~~~-~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~ 243 (329)
|++++|.+++..+..+..++ +|++|++++| .+++. ++..+..+ +|++|++++| .+++. .+..+..++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~-~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCC-CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 99999999988888898887 9999999999 67753 56556666 8999999999 88865 577788899 999999
Q ss_pred ccCcc--ce-eec-CCCCCCCCCCEEEccCCc-CccccchhhcCCCCCCEEEeecCc-Cccc-CCCCCccCccCcccccC
Q 020203 244 VSRNL--LE-FNL-SKVEFPQSLTNLDLNHNK-IFGSIPAQITSLENLGFLNVSYNR-LCGP-IPVGGKLQSFGYTEYFH 316 (329)
Q Consensus 244 l~~n~--l~-~~~-~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~-l~~~-~p~~~~l~~L~~l~l~~ 316 (329)
+++|. ++ +.+ ..+..+++|++|++++|. +++..+..+..+++|++|++++|. +... +....++++|+.|++.+
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 99994 44 222 224567899999999999 777888889999999999999995 3221 22357799999999999
Q ss_pred C
Q 020203 317 N 317 (329)
Q Consensus 317 n 317 (329)
|
T Consensus 282 ~ 282 (336)
T 2ast_B 282 I 282 (336)
T ss_dssp S
T ss_pred c
Confidence 8
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=9e-21 Score=178.94 Aligned_cols=181 Identities=24% Similarity=0.322 Sum_probs=153.6
Q ss_pred CCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEec
Q 020203 93 YLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHL 172 (329)
Q Consensus 93 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 172 (329)
+++.|++++ +.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~-n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNR-LNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCS-SCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCC-CCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 899999999 78887 66655 488999999999999 677 457999999999999996 777 665 9999999
Q ss_pred ccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCcccee
Q 020203 173 DRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEF 251 (329)
Q Consensus 173 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 251 (329)
++|.+++ +|. .+. +|++|++++|.+++ +|. .+ +|+.|++++|.+++.+. +. ++|++|++++|.++.
T Consensus 128 s~N~l~~-lp~---~l~-~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPA-LLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CSSCCSC-CCC---CCT-TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS
T ss_pred CCCcCCC-CCC---cCc-cccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc
Confidence 9999995 776 455 99999999999996 665 34 89999999999998544 55 899999999999995
Q ss_pred ecCCCCCCCCC-------CEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC
Q 020203 252 NLSKVEFPQSL-------TNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV 302 (329)
Q Consensus 252 ~~~~~~~~~~L-------~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 302 (329)
.+. +. .+| ++|++++|+|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus 195 lp~-~~--~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 195 LPA-VP--VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hhh-HH--HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 444 33 377 99999999998 7898888899999999999999997765
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.6e-21 Score=158.24 Aligned_cols=162 Identities=22% Similarity=0.224 Sum_probs=137.8
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.+++++|.+.+..+..+..+++|++|++++ +.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCC-CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 5789999999999877666789999999999999 889887676789999999999999999966666789999999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCCccCEEEeeCCcCcc
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEG 227 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~~L~~L~l~~n~l~~ 227 (329)
+++|++++..+..+..+++|++|++++|.+++..+..+..+. +|++|++++|.+.+..| .++.|+++.|.++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~------~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIWLHDNPWDCTCP------GIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSCCBCCCTT------TTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC-CccEEEecCCCeecCCC------CHHHHHHHHHhCCc
Confidence 999999977777789999999999999999965555677787 99999999998764322 57778888888888
Q ss_pred chhhhccCCC
Q 020203 228 DASFLFGLNK 237 (329)
Q Consensus 228 ~~~~~~~~~~ 237 (329)
.+|..++.++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 8887666544
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=4.4e-20 Score=160.89 Aligned_cols=170 Identities=21% Similarity=0.341 Sum_probs=82.7
Q ss_pred CCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCE
Q 020203 90 DLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGA 169 (329)
Q Consensus 90 ~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 169 (329)
.+++|+.|++++ +.+... + .+..+++|++|++++|.+++ ++. +..+++|++|++++|++++ ++ .+..+++|++
T Consensus 44 ~l~~L~~L~l~~-~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANN-SDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTT-SCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hcCcccEEEccC-CCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 344555555555 344332 2 34555555555555555553 222 5555555555555555542 22 2455555555
Q ss_pred EecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCCccCEEEeeCCcCccchhhhccCCCCCCEEEccCccc
Q 020203 170 LHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLL 249 (329)
Q Consensus 170 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 249 (329)
|++++|.+.+ + ..+..++ +|++|++++|.++ +. ..+..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~-~-~~l~~l~-~L~~L~l~~n~l~-----------------------~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 117 LSLEHNGISD-I-NGLVHLP-QLESLYLGNNKIT-----------------------DI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECTTSCCCC-C-GGGGGCT-TCCEEECCSSCCC-----------------------CC--GGGGGCTTCSEEECCSSCC
T ss_pred EECCCCcCCC-C-hhhcCCC-CCCEEEccCCcCC-----------------------cc--hhhccCCCCCEEEccCCcc
Confidence 5555555542 2 2344444 5555555555544 33 2344444455555555544
Q ss_pred eeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCc
Q 020203 250 EFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLC 297 (329)
Q Consensus 250 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 297 (329)
++..+ +..+++|++|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus 169 ~~~~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 169 SDIVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred ccchh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 44333 4444455555555555542 23 2445555555555555554
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.2e-19 Score=152.45 Aligned_cols=164 Identities=23% Similarity=0.301 Sum_probs=127.6
Q ss_pred CCCCCCCCCcCccceEecCCCCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccC
Q 020203 47 ASWNPKTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISW 126 (329)
Q Consensus 47 ~~w~~~~~~c~~~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~ 126 (329)
..|..++..|+|.++.|.. +++ +.+|..+. ++|++|++++ +.+++..|..|.++++|++|++++
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~------------~~l-~~ip~~~~--~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRS------------KRH-ASVPAGIP--TNAQILYLHD-NQITKLEPGVFDSLINLKELYLGS 73 (229)
T ss_dssp -CCCCTTCEEETTEEECTT------------SCC-SSCCSCCC--TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred hccCCCCCEEeCCEeEccC------------CCc-CccCCCCC--CCCCEEEcCC-CccCccCHHHhhCccCCcEEECCC
Confidence 4465677889999999963 222 23444333 6889999999 888888888888899999999999
Q ss_pred ccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccc
Q 020203 127 TNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKI 206 (329)
Q Consensus 127 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 206 (329)
|.+....+..|..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|..+..+. +|++|++++|.+++..
T Consensus 74 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 74 NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT-HLTHLALDQNQLKSIP 151 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT-TCSEEECCSSCCCCCC
T ss_pred CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCC-CCCEEECCCCcCCccC
Confidence 9988555566788899999999999998666666788889999999999888 7788888877 8888888888888555
Q ss_pred cccccCC-ccCEEEeeCCcCccc
Q 020203 207 PASLGSM-DFNTIDLSRNKLEGD 228 (329)
Q Consensus 207 p~~l~~~-~L~~L~l~~n~l~~~ 228 (329)
+..+..+ +|+.|++++|.+.+.
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCCccCC
Confidence 5556666 788888888877654
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.83 E-value=7.4e-22 Score=192.35 Aligned_cols=261 Identities=18% Similarity=0.210 Sum_probs=135.8
Q ss_pred CCHHHHHHHHHHHHhCCCC--CCCCCCCC-CCCCcCccceEecCCCCcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCC
Q 020203 25 CNPNDKKVLLKFKKSLNNP--YVLASWNP-KTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHK 101 (329)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~--~~~~~w~~-~~~~c~~~gv~c~~~~~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 101 (329)
..+.+++++.+++.++... .....|.. .+....|.+..++. .+++.+++.++.+... +..+.....|..+.+..
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~ 205 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDE 205 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCcccccC
Confidence 4456778888888776322 12244533 34456788877754 6799999998888663 44433333344433322
Q ss_pred C----CCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccC
Q 020203 102 L----PSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKL 177 (329)
Q Consensus 102 ~----~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 177 (329)
. +.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 0 2222 35677889999999999999999 78888889999999999999999 8899999999999999999999
Q ss_pred cccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCC-CCEEEccCccceeecCC
Q 020203 178 TGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKT-TQRIDVSRNLLEFNLSK 255 (329)
Q Consensus 178 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~ 255 (329)
+ .+|..++.+. +|++|+|++|.++ .+|..|+.+ +|+.|+|++|.+++.+|..+..... ...+++++|.+++.+|
T Consensus 283 ~-~lp~~~~~l~-~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p- 358 (727)
T 4b8c_D 283 T-SLPAELGSCF-QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP- 358 (727)
T ss_dssp S-SCCSSGGGGT-TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-
T ss_pred C-ccChhhcCCC-CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-
Confidence 9 8899999998 9999999999998 788889888 9999999999999988877754322 2347788898887665
Q ss_pred CCCCCCCCEEEccCC--------cCccccchhhcCCCCCCEEEeecCcCccc
Q 020203 256 VEFPQSLTNLDLNHN--------KIFGSIPAQITSLENLGFLNVSYNRLCGP 299 (329)
Q Consensus 256 ~~~~~~L~~L~l~~n--------~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 299 (329)
..|+.|+++.| .+.+..+..+..+.++....+++|-+.+.
T Consensus 359 ----~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 359 ----HERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp ----CC-----------------------------------------CCCGG
T ss_pred ----cccceeEeecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence 46778888877 33333344445666677778888877643
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=7.9e-20 Score=152.67 Aligned_cols=151 Identities=19% Similarity=0.267 Sum_probs=106.6
Q ss_pred CEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeC
Q 020203 144 TFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSR 222 (329)
Q Consensus 144 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~ 222 (329)
+.++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+. +|++|++++|.+++..|..|..+ +|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 56777787777 5665543 5778888888887755555677776 78888888887776667777776 777777777
Q ss_pred CcCccchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcc
Q 020203 223 NKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCG 298 (329)
Q Consensus 223 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 298 (329)
|.++..++..|..+++|++|++++|.+++..+. +..+++|++|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 777776666677777777777777777765443 5566677777777777765555566667777777777776653
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=6.9e-20 Score=164.56 Aligned_cols=174 Identities=23% Similarity=0.181 Sum_probs=115.8
Q ss_pred CEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCC-CCCCCCEEecccccCcccCChhhhhcCCCCCeEEcc
Q 020203 120 KTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLS-KLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLS 198 (329)
Q Consensus 120 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 198 (329)
+.++++++.++ .+|..+. +.++.|++++|++++..+..+. .+++|++|++++|.+++..+..+..+. +|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECC
Confidence 57788888887 5665443 4577888888888766666666 778888888888888766666677776 78888888
Q ss_pred cCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCC----CCCCCCCEEEccCCcCc
Q 020203 199 HNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKV----EFPQSLTNLDLNHNKIF 273 (329)
Q Consensus 199 ~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~~~L~~L~l~~n~l~ 273 (329)
+|.++...+..|..+ +|++|++++|.+++..+..|..+++|++|++++|.++...+.. ..+++|++|++++|+|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 887775555556666 7777777777777766666777777777777777666543331 33556666666666666
Q ss_pred cccchhhcCCCC--CCEEEeecCcCc
Q 020203 274 GSIPAQITSLEN--LGFLNVSYNRLC 297 (329)
Q Consensus 274 ~~~p~~~~~l~~--L~~L~l~~n~l~ 297 (329)
+..+..+..++. ++.|++++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 444445555554 255666666554
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=151.76 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=86.3
Q ss_pred CEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCC-ccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcc
Q 020203 120 KTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIP-GSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLS 198 (329)
Q Consensus 120 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 198 (329)
+.+++++|.++ .+|..+. +.+++|++++|++++..+ ..|..+++|++|++++|.+++..+..+..+. +|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECC
Confidence 46677777666 4554442 345666666666664433 2355666666666666666655455555555 66666666
Q ss_pred cCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCcc
Q 020203 199 HNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFG 274 (329)
Q Consensus 199 ~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~ 274 (329)
+|.+++..+..|..+ +|++|++++|.+++..+..|..+++|++|++++|.+++..+. +..+++|++|++++|.+.+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 666665444455555 566666666666655555555555555555555555544332 4444555555555555543
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.3e-19 Score=162.69 Aligned_cols=175 Identities=21% Similarity=0.191 Sum_probs=145.9
Q ss_pred CEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCccccc-CCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecc
Q 020203 95 ETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFIS-QLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLD 173 (329)
Q Consensus 95 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 173 (329)
+.+++++ +.++. +|..+. ..++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~-~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSK-QQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCS-SCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCC-CCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 5788888 67766 555443 4689999999999977777777 89999999999999997777889999999999999
Q ss_pred cccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhc---cCCCCCCEEEccCccc
Q 020203 174 RNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLF---GLNKTTQRIDVSRNLL 249 (329)
Q Consensus 174 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l 249 (329)
+|.+++..+..+..+. +|++|++++|.+++..+..|..+ +|+.|++++|.+++..+..| ..+++|+.|++++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9999976677788888 99999999999998778889888 99999999999998877777 5689999999999999
Q ss_pred eeecCC-CCCCCC--CCEEEccCCcCcc
Q 020203 250 EFNLSK-VEFPQS--LTNLDLNHNKIFG 274 (329)
Q Consensus 250 ~~~~~~-~~~~~~--L~~L~l~~n~l~~ 274 (329)
+...+. +..++. ++.|++++|.+..
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CccCHHHhhhccHhhcceEEecCCCccC
Confidence 864432 333344 5889999999874
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=5.5e-19 Score=153.90 Aligned_cols=168 Identities=24% Similarity=0.326 Sum_probs=144.9
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.++++++.+... + .+..+++|++|++++ +.+++..+ +.++++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNG-NKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccC-CccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 4688999999998654 3 488999999999999 78887544 8999999999999999984 44 489999999999
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCc
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLE 226 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~ 226 (329)
+++|++++ + +.+..+++|+.|++++|.+++. ..+..++ +|++|++++|.+++..+ +..+ +|+.|++++|.++
T Consensus 119 L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCC-CCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 99999985 3 5688999999999999999854 5788888 99999999999996544 7777 9999999999998
Q ss_pred cchhhhccCCCCCCEEEccCcccee
Q 020203 227 GDASFLFGLNKTTQRIDVSRNLLEF 251 (329)
Q Consensus 227 ~~~~~~~~~~~~L~~L~l~~n~l~~ 251 (329)
+.. .+..+++|+.|++++|.++.
T Consensus 192 ~l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 DLR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp BCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred CCh--hhccCCCCCEEECcCCcccC
Confidence 763 37889999999999999875
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=7e-19 Score=146.93 Aligned_cols=151 Identities=17% Similarity=0.236 Sum_probs=133.8
Q ss_pred CEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEccc
Q 020203 120 KTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSH 199 (329)
Q Consensus 120 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 199 (329)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|.+.+..|..+..+. +|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCC
Confidence 57899999998 6776554 7899999999999977777899999999999999999988899999998 999999999
Q ss_pred CcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCcc
Q 020203 200 NQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFG 274 (329)
Q Consensus 200 n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~ 274 (329)
|.++...+..|..+ +|++|++++|.+++..+..|..+++|++|++++|.+++..+. +..+++|++|++++|.+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99996545556777 999999999999999999999999999999999999987765 6778899999999999864
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=5.5e-19 Score=168.35 Aligned_cols=170 Identities=21% Similarity=0.351 Sum_probs=96.6
Q ss_pred CCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCC
Q 020203 89 GDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLG 168 (329)
Q Consensus 89 ~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 168 (329)
..+++|+.|++++ +.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|++++ ++ .+..+++|+
T Consensus 40 ~~L~~L~~L~l~~-n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANN-SDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTT-CCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hcCCCCCEEECcC-CCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 4555666666666 455442 2 46666666666666666664332 6666666666666666653 22 466666666
Q ss_pred EEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCc
Q 020203 169 ALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRN 247 (329)
Q Consensus 169 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 247 (329)
.|++++|.+.+ + ..+..++ +|+.|+|++|.+++. ..+..+ +|+.|++++|.+++..+ +..+++|+.|++++|
T Consensus 113 ~L~Ls~N~l~~-l-~~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGISD-I-NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCCC-C-GGGGGCT-TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCCC-C-ccccCCC-ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 66666666653 2 3455555 666666666666542 344444 56666666666555444 455555555555555
Q ss_pred cceeecCCCCCCCCCCEEEccCCcCc
Q 020203 248 LLEFNLSKVEFPQSLTNLDLNHNKIF 273 (329)
Q Consensus 248 ~l~~~~~~~~~~~~L~~L~l~~n~l~ 273 (329)
.+++. +.+..+++|+.|++++|.+.
T Consensus 186 ~i~~l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 186 HISDL-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCCBC-GGGTTCTTCSEEECCSEEEE
T ss_pred CCCCC-hHHccCCCCCEEEccCCcCc
Confidence 55532 33444455555555555554
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.1e-18 Score=146.77 Aligned_cols=153 Identities=23% Similarity=0.157 Sum_probs=108.1
Q ss_pred CCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcc
Q 020203 119 LKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLS 198 (329)
Q Consensus 119 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 198 (329)
-+.++.+++.+. .+|..+. ++|++|++++|++++..|..+..+++|++|++++|.+....+..+..+. +|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-QLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-CcCEEECC
Confidence 456888888877 6665443 7888888888888877777788888888888888888644444556666 78888888
Q ss_pred cCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCcccc
Q 020203 199 HNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSI 276 (329)
Q Consensus 199 ~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~ 276 (329)
+|.+++..+..|..+ +|++|++++|.++. +|..+..+++|++|++++|.+++..+. +..+++|++|++++|.+.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 888875555556666 77777777777773 445556677777777777777655443 455667777777777766443
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=5.5e-19 Score=145.00 Aligned_cols=151 Identities=13% Similarity=0.234 Sum_probs=82.0
Q ss_pred CCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEE
Q 020203 140 LTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTI 218 (329)
Q Consensus 140 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L 218 (329)
+++|+.|++++|.++ .+| .+..+++|++|++++|.+. .+..+..++ +|++|++++|.+++..+..++.+ +|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 344444444444444 333 3444445555555555333 122344444 55555555555554445555555 56666
Q ss_pred EeeCCcCccchhhhccCCCCCCEEEccCcc-ceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCc
Q 020203 219 DLSRNKLEGDASFLFGLNKTTQRIDVSRNL-LEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLC 297 (329)
Q Consensus 219 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 297 (329)
++++|.+++..+..++.+++|++|++++|. ++ .++.+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 666666655555555666666666666665 33 33345556677777777777764 33 5667777777777777765
Q ss_pred c
Q 020203 298 G 298 (329)
Q Consensus 298 ~ 298 (329)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=9.9e-19 Score=166.57 Aligned_cols=169 Identities=24% Similarity=0.328 Sum_probs=130.3
Q ss_pred CcEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEE
Q 020203 68 NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLE 147 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 147 (329)
.+++.|+++++.+.. ++ .+..+++|+.|++++ +.+.+..+ +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNG-NKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTT-SCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeC-CCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 457777888887754 33 578888888888888 67776543 7888888888888888874 34 578888888888
Q ss_pred ccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCc
Q 020203 148 LSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLE 226 (329)
Q Consensus 148 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~ 226 (329)
+++|++.+ + +.+..+++|+.|++++|.+.+. ..+..+. +|+.|+|++|.+.+..| +..+ +|+.|++++|.++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCT-TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccC-CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 88888874 3 4577888888888888888744 5677777 88888888888886554 6666 8888888888887
Q ss_pred cchhhhccCCCCCCEEEccCccceee
Q 020203 227 GDASFLFGLNKTTQRIDVSRNLLEFN 252 (329)
Q Consensus 227 ~~~~~~~~~~~~L~~L~l~~n~l~~~ 252 (329)
+. ..+..+++|+.|++++|.+.+.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CC--hHHccCCCCCEEEccCCcCcCC
Confidence 75 3477788888888888888754
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=144.77 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=110.8
Q ss_pred EEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCCh-hhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccC
Q 020203 72 SLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQ-PAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSF 150 (329)
Q Consensus 72 ~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 150 (329)
.++++++.+.. +|..+. ..+++|++++ +.+++..+ ..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCS-SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCC-CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 56777777754 565443 3467888888 77776643 3467788888888888888866666777888888888888
Q ss_pred CcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccc
Q 020203 151 NNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGD 228 (329)
Q Consensus 151 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~ 228 (329)
|++++..+..|..+++|++|++++|.+.+..|..+..+. +|++|++++|.+++..|..|..+ +|+.|++++|.+.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT-TCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc-cCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 888766666677788888888888888766677777776 77777777777776666667666 677777777776654
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1e-18 Score=143.41 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=95.6
Q ss_pred cCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCC
Q 020203 114 AKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIP 193 (329)
Q Consensus 114 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 193 (329)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..++ +|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT-SLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT-TCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC-CCC
Confidence 44556666666666666 444 4666666666666666554 223566666666666666666655566666665 667
Q ss_pred eEEcccCcCcccccccccCC-ccCEEEeeCCc-CccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCc
Q 020203 194 DLYLSHNQLSGKIPASLGSM-DFNTIDLSRNK-LEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNK 271 (329)
Q Consensus 194 ~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 271 (329)
+|++++|.+++..+..+..+ +|++|++++|. ++.. + .+..+++|++|++++|.+++. +.+..+++|++|++++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~-~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCC-TTGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcCh-HHhccCCCCCEEEeeCcc
Confidence 77777776665556666665 67777777776 4333 3 466677777777777777753 355666778888888887
Q ss_pred Cc
Q 020203 272 IF 273 (329)
Q Consensus 272 l~ 273 (329)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 65
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=5.3e-19 Score=151.74 Aligned_cols=170 Identities=22% Similarity=0.310 Sum_probs=124.5
Q ss_pred CCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCE
Q 020203 90 DLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGA 169 (329)
Q Consensus 90 ~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 169 (329)
.+.++..++++. +.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++. +. +..+++|++
T Consensus 17 ~l~~l~~l~l~~-~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGK-QSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTC-SCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCE
T ss_pred HHHHHHHHHhcC-CCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCE
Confidence 455566677777 6666532 5677888889999988888 455 577888888999988888854 33 888888888
Q ss_pred EecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCcc
Q 020203 170 LHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNL 248 (329)
Q Consensus 170 L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 248 (329)
|++++|.+++ +|... . . +|++|++++|.+++ ++ .+..+ +|+.|++++|.+++.. .+..+++|++|++++|.
T Consensus 90 L~L~~N~l~~-l~~~~-~-~-~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGIP-S-A-CLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp EECCSSCCSC-CTTCC-C-S-SCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSC
T ss_pred EECCCCccCC-cCccc-c-C-cccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCc
Confidence 8888888874 44322 2 4 78888888888875 33 46666 7888888888887753 46677778888888887
Q ss_pred ceeecCCCCCCCCCCEEEccCCcCccc
Q 020203 249 LEFNLSKVEFPQSLTNLDLNHNKIFGS 275 (329)
Q Consensus 249 l~~~~~~~~~~~~L~~L~l~~n~l~~~ 275 (329)
+++. +.+..+++|++|++++|.+.+.
T Consensus 162 i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 162 ITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred Ccch-HHhccCCCCCEEeCCCCcccCC
Confidence 7765 5566677777777777777643
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=5.3e-21 Score=181.11 Aligned_cols=194 Identities=21% Similarity=0.156 Sum_probs=152.6
Q ss_pred cCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCc-------------CCCCCCccCCCCCCCCEEe-cccccCcc
Q 020203 114 AKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNN-------------LSGTIPGSLSKLQKLGALH-LDRNKLTG 179 (329)
Q Consensus 114 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~p~~l~~l~~L~~L~-l~~n~l~~ 179 (329)
...++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45677888888888887 778888888888888876664 4456666777777888877 5555433
Q ss_pred cCCh------hhh--hcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccce
Q 020203 180 SIPE------SFG--TFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLE 250 (329)
Q Consensus 180 ~~~~------~~~--~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 250 (329)
.++. .+. ... .|+.|++++|.+++ +|. ++.+ +|+.|++++|.++ .+|..++.+++|++|++++|.++
T Consensus 424 ~L~~l~l~~n~i~~l~~~-~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYA-DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhhhhcccccccCcc-CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 1111 111 112 68999999999995 676 7777 9999999999999 56778999999999999999999
Q ss_pred eecCCCCCCCCCCEEEccCCcCcccc-chhhcCCCCCCEEEeecCcCcccCCCCC----ccCccCcccc
Q 020203 251 FNLSKVEFPQSLTNLDLNHNKIFGSI-PAQITSLENLGFLNVSYNRLCGPIPVGG----KLQSFGYTEY 314 (329)
Q Consensus 251 ~~~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~~~----~l~~L~~l~l 314 (329)
+. |.+..+++|++|++++|++++.. |..++.+++|+.|++++|++++.+|... .+++|+.|++
T Consensus 500 ~l-p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 NV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CC-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CC-cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 74 57888899999999999999776 9999999999999999999999877653 3777887754
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.9e-18 Score=148.32 Aligned_cols=166 Identities=20% Similarity=0.247 Sum_probs=132.7
Q ss_pred EEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEcc
Q 020203 70 INSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELS 149 (329)
Q Consensus 70 v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 149 (329)
++.++++.+.+.+.. .+..+++|++|++++ +.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~-n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDN-SNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTT-SCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcC-CCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECC
Confidence 445567777776543 467888999999999 67765 44 68889999999999999985 444 8899999999999
Q ss_pred CCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccc
Q 020203 150 FNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGD 228 (329)
Q Consensus 150 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~ 228 (329)
+|++++ +|.. .. ++|++|++++|.+++ ++ .+..+. +|++|++++|++++. + .+..+ +|+.|++++|.+++.
T Consensus 94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~-~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 94 RNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLK-NLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCT-TCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcc-cccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 999984 4433 33 899999999999984 43 577887 899999999999853 4 56666 899999999999887
Q ss_pred hhhhccCCCCCCEEEccCccceee
Q 020203 229 ASFLFGLNKTTQRIDVSRNLLEFN 252 (329)
Q Consensus 229 ~~~~~~~~~~L~~L~l~~n~l~~~ 252 (329)
..+..+++|+.|++++|.++..
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 6678889999999999998865
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=3e-17 Score=133.97 Aligned_cols=178 Identities=21% Similarity=0.252 Sum_probs=85.2
Q ss_pred CEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCc-cCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcc
Q 020203 120 KTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPG-SLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLS 198 (329)
Q Consensus 120 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 198 (329)
++++++++.++ .+|..+.. ++++|++++|++++..+. .++.+++|++|++++|.+++..|..+..+. +|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCEEECC
Confidence 45555555554 44443322 555555555555533332 244555555555555555544444444444 45555555
Q ss_pred cCcCcccccccccCCccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccc
Q 020203 199 HNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIP 277 (329)
Q Consensus 199 ~n~l~~~~p~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p 277 (329)
+|+++ +..+..|..+++|++|++++|.+++..+. +..+++|++|++++|.+.+..+
T Consensus 87 ~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIK-----------------------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCC-----------------------EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCC-----------------------ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 55444 44444444455555555555555544332 4445566666666666665433
Q ss_pred hh-hcCCCCCCEEEeecCcCcccCCCCCccCccCcccccCCCCCCCCCCC-CC
Q 020203 278 AQ-ITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLE-SC 328 (329)
Q Consensus 278 ~~-~~~l~~L~~L~l~~n~l~~~~p~~~~l~~L~~l~l~~n~~~~~~~~~-~c 328 (329)
.. +.. .++...+..+......| ..+......++..+...|..+.+ .|
T Consensus 144 l~~~~~--~l~~~~~~~~~~~C~~P--~~l~~~~l~~l~~~~~~C~~~~~~~c 192 (192)
T 1w8a_A 144 LAWFAE--WLRKKSLNGGAARCGAP--SKVRDVQIKDLPHSEFKCSSENSEGC 192 (192)
T ss_dssp GHHHHH--HHHHHCCSGGGCBBCSS--TTTTTSBGGGSCTTTCCCCCC---CC
T ss_pred chHHHH--HHHHcCCCCCCCCCCCC--hHHcCCChhhCcHhhcCcCCCCCCCC
Confidence 11 110 01111122222222223 23455566677778888876544 44
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.2e-17 Score=136.48 Aligned_cols=131 Identities=22% Similarity=0.323 Sum_probs=113.8
Q ss_pred CEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcc-cccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecc
Q 020203 95 ETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPD-FISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLD 173 (329)
Q Consensus 95 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 173 (329)
+.+++++ +.++. +|..+. .++++|++++|.+.+..+. .+..+++|++|++++|++++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~-~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTG-RGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTT-SCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCC-CCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 7889998 77754 665554 3899999999999965554 48899999999999999998889999999999999999
Q ss_pred cccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchh
Q 020203 174 RNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDAS 230 (329)
Q Consensus 174 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~ 230 (329)
+|.+++..+..+..+. +|++|++++|++++..|..+..+ +|++|++++|.+.+..+
T Consensus 87 ~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLH-QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCT-TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCC-CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999988888888888 99999999999998888888887 89999999999887643
No 117
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=1.7e-18 Score=165.31 Aligned_cols=230 Identities=12% Similarity=0.010 Sum_probs=134.4
Q ss_pred CCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCc-ccccCCCCCCEEEccCCcCCCCCCccCCCCCCC
Q 020203 89 GDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVP-DFISQLTNLTFLELSFNNLSGTIPGSLSKLQKL 167 (329)
Q Consensus 89 ~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 167 (329)
..+++|+.+++++ . ....+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|
T Consensus 267 ~~~~~L~~L~l~~-~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 267 VFPRKLCRLGLSY-M-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCTTCCEEEETT-C-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred hccccccccCccc-c-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 3344444444443 1 223345555666677777777776553222 234566777777776322211222223456677
Q ss_pred CEEeccc-----------ccCcccCChh-hhhcCCCCCeEEcccCcCcccccccccC-C-ccCEEEee----CCcCccc-
Q 020203 168 GALHLDR-----------NKLTGSIPES-FGTFTGSIPDLYLSHNQLSGKIPASLGS-M-DFNTIDLS----RNKLEGD- 228 (329)
Q Consensus 168 ~~L~l~~-----------n~l~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~p~~l~~-~-~L~~L~l~----~n~l~~~- 228 (329)
++|++++ |.+++..... ...++ +|++|+++.|.+++..+..++. . +|+.|+++ .|.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ-ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT-TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCc-cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 7777772 4554332222 23354 7777777777777655555544 3 67788875 5566653
Q ss_pred ----hhhhccCCCCCCEEEccCcc--ceeecCC--CCCCCCCCEEEccCCcCcc-ccchhhcCCCCCCEEEeecCcCccc
Q 020203 229 ----ASFLFGLNKTTQRIDVSRNL--LEFNLSK--VEFPQSLTNLDLNHNKIFG-SIPAQITSLENLGFLNVSYNRLCGP 299 (329)
Q Consensus 229 ----~~~~~~~~~~L~~L~l~~n~--l~~~~~~--~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~ 299 (329)
.+..+.++++|++|+++.|. +++.... ...+++|++|++++|++++ .++..+..+++|++|++++|++++.
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 33445667778888886432 4332111 1235678888888888875 3455567788888888888887654
Q ss_pred -CCCC-CccCccCcccccCCCCCCC
Q 020203 300 -IPVG-GKLQSFGYTEYFHNRCLCG 322 (329)
Q Consensus 300 -~p~~-~~l~~L~~l~l~~n~~~~~ 322 (329)
++.. ..+++|+.|++++|+ +.+
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred HHHHHHHhcCccCeeECcCCc-CCH
Confidence 3332 567788888888887 443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=4.6e-20 Score=174.70 Aligned_cols=195 Identities=18% Similarity=0.157 Sum_probs=152.6
Q ss_pred CCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCcc-------------CCccCcccccCCCCCCEEE-ccCCcC
Q 020203 88 VGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTN-------------ISGPVPDFISQLTNLTFLE-LSFNNL 153 (329)
Q Consensus 88 l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l 153 (329)
+..+++|+.|++++ +.++ .+|+.++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 345 ~~~~~~L~~L~Ls~-n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 345 SATDEQLFRCELSV-EKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp CSTTTTSSSCCCCH-HHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred cccCccceeccCCh-hhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 46788999999999 7775 589999999999999998775 4556777778888888888 555543
Q ss_pred CCCCCc------cCCC--CCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCc
Q 020203 154 SGTIPG------SLSK--LQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNK 224 (329)
Q Consensus 154 ~~~~p~------~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~ 224 (329)
. .++. .+.. ...|+.|++++|.+++ +|. +..+. +|+.|++++|.++ .+|..++.+ +|+.|++++|.
T Consensus 423 ~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 423 D-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGT-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred c-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccc-cCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence 2 1110 0001 1258899999999984 676 88888 9999999999999 788888888 89999999999
Q ss_pred CccchhhhccCCCCCCEEEccCccceee--cCCCCCCCCCCEEEccCCcCccccch---hhcCCCCCCEEEe
Q 020203 225 LEGDASFLFGLNKTTQRIDVSRNLLEFN--LSKVEFPQSLTNLDLNHNKIFGSIPA---QITSLENLGFLNV 291 (329)
Q Consensus 225 l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~L~~L~l~~n~l~~~~p~---~~~~l~~L~~L~l 291 (329)
+++. | .++.+++|++|++++|.+++. +..+..+++|++|++++|++++..|. .+..+++|+.|++
T Consensus 498 l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 498 LENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9984 4 788899999999999999987 34577889999999999999865442 2345889998864
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=1.3e-16 Score=127.22 Aligned_cols=134 Identities=21% Similarity=0.249 Sum_probs=102.4
Q ss_pred CCCCCCEEeccCccCC-ccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCC
Q 020203 115 KLKNLKTLRISWTNIS-GPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIP 193 (329)
Q Consensus 115 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 193 (329)
..++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..++ +|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-NLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-TCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-CCC
Confidence 3477888888888887 67787778888899999998888854 6788888899999999988866777777777 888
Q ss_pred eEEcccCcCcccc-cccccCC-ccCEEEeeCCcCccchh---hhccCCCCCCEEEccCcccee
Q 020203 194 DLYLSHNQLSGKI-PASLGSM-DFNTIDLSRNKLEGDAS---FLFGLNKTTQRIDVSRNLLEF 251 (329)
Q Consensus 194 ~L~l~~n~l~~~~-p~~l~~~-~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~~ 251 (329)
+|++++|.+++.. +..+..+ +|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8888888887532 2566666 77888888887776655 466667777777776666653
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=6.6e-18 Score=164.55 Aligned_cols=179 Identities=21% Similarity=0.191 Sum_probs=123.6
Q ss_pred ecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCC
Q 020203 83 QIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLS 162 (329)
Q Consensus 83 ~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 162 (329)
..+..+..++.|+.|+|++ +.+. .+|..+.++++|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~-n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSN-LQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTT-SCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCC-CCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 3466788999999999999 7777 57777889999999999999999 89999999999999999999999 8899999
Q ss_pred CCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC--ccCEEEeeCCcCccchhhhccCCCCCC
Q 020203 163 KLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM--DFNTIDLSRNKLEGDASFLFGLNKTTQ 240 (329)
Q Consensus 163 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~--~L~~L~l~~n~l~~~~~~~~~~~~~L~ 240 (329)
.+++|++|+|++|.++ .+|..++.+. +|++|+|++|.+++.+|..+... ....+++++|.+++.+|.. +.
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~ 362 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLC-NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RR 362 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCT-TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCC-CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cc
Confidence 9999999999999997 8898899998 99999999999999888887655 3345788999998877653 45
Q ss_pred EEEccCc--------cceeecCC-CCCCCCCCEEEccCCcCc
Q 020203 241 RIDVSRN--------LLEFNLSK-VEFPQSLTNLDLNHNKIF 273 (329)
Q Consensus 241 ~L~l~~n--------~l~~~~~~-~~~~~~L~~L~l~~n~l~ 273 (329)
.|+++.| .+.+..+. +..+..++...+++|-+.
T Consensus 363 ~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 363 FIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------------------------------------CCC
T ss_pred eeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 5666655 22221111 223344556666777664
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=2.6e-16 Score=125.49 Aligned_cols=131 Identities=20% Similarity=0.190 Sum_probs=77.4
Q ss_pred CCCCEEecccccCc-ccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEE
Q 020203 165 QKLGALHLDRNKLT-GSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRI 242 (329)
Q Consensus 165 ~~L~~L~l~~n~l~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 242 (329)
++|++|++++|.+. +.+|..+..++ +|++|++++|.+++. ..+..+ +|++|++++|.+++.++..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 34455555555544 34444444444 555555555555532 344444 56666666666665555555556666666
Q ss_pred EccCccceeec--CCCCCCCCCCEEEccCCcCccccc---hhhcCCCCCCEEEeecCcCcc
Q 020203 243 DVSRNLLEFNL--SKVEFPQSLTNLDLNHNKIFGSIP---AQITSLENLGFLNVSYNRLCG 298 (329)
Q Consensus 243 ~l~~n~l~~~~--~~~~~~~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l~~n~l~~ 298 (329)
++++|.+++.. ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 66666666532 335556677777777777774433 367777888888888877764
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=1.6e-16 Score=124.11 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=99.5
Q ss_pred CCCCCEEeccCccCC-ccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCe
Q 020203 116 LKNLKTLRISWTNIS-GPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPD 194 (329)
Q Consensus 116 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 194 (329)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+.+.+|..+..++ +|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-NLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-TCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-CCCE
Confidence 367888888888887 67777778888888888888888755 6778888888888888888866777777777 8888
Q ss_pred EEcccCcCccc-ccccccCC-ccCEEEeeCCcCccchh---hhccCCCCCCEEEcc
Q 020203 195 LYLSHNQLSGK-IPASLGSM-DFNTIDLSRNKLEGDAS---FLFGLNKTTQRIDVS 245 (329)
Q Consensus 195 L~l~~n~l~~~-~p~~l~~~-~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~ 245 (329)
|++++|.+++. .+..+..+ +|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888888853 23566666 78888888888877665 567777778877765
No 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=7.8e-18 Score=160.72 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=40.1
Q ss_pred CCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCccccc-ccccCC-ccCEEEeeCCcCccchhhhccCCCC
Q 020203 161 LSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIP-ASLGSM-DFNTIDLSRNKLEGDASFLFGLNKT 238 (329)
Q Consensus 161 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~ 238 (329)
+..+++|+.++++++.. +.+|..+..++ +|++|++++|.+++... ..+..+ +|+.|+++++...+..+..+..+++
T Consensus 266 l~~~~~L~~L~l~~~~~-~~l~~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGP-NEMPILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTCCT-TTGGGGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCccccch-hHHHHHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 34444555555544322 24455555555 67777777666543322 222333 5666666522222223333344555
Q ss_pred CCEEEcc
Q 020203 239 TQRIDVS 245 (329)
Q Consensus 239 L~~L~l~ 245 (329)
|++|+++
T Consensus 344 L~~L~L~ 350 (592)
T 3ogk_B 344 LKRLRIE 350 (592)
T ss_dssp CCEEEEE
T ss_pred CCEEEee
Confidence 5566555
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=6.6e-16 Score=126.07 Aligned_cols=126 Identities=23% Similarity=0.286 Sum_probs=89.4
Q ss_pred CEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccC
Q 020203 168 GALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSR 246 (329)
Q Consensus 168 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 246 (329)
+.+++++|.++ .+|..+. . ++++|++++|.++ .+|..|..+ +|+.|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~-~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--R-DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--T-TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--C-CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 56777888777 6665442 2 7788888888877 566667666 778888888887777777777777777777777
Q ss_pred ccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcc
Q 020203 247 NLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCG 298 (329)
Q Consensus 247 n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 298 (329)
|.+++..+. +..+++|++|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 777765553 5666777777777777775444456677777777777777654
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=2.6e-16 Score=122.87 Aligned_cols=127 Identities=24% Similarity=0.249 Sum_probs=94.5
Q ss_pred CcEEEEEeCCCCCC-eecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEE
Q 020203 68 NRINSLTIFAGDLP-GQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFL 146 (329)
Q Consensus 68 ~~v~~l~l~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 146 (329)
.+++.++++++.+. +.+|..+..+++|++|++++ +.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN-VGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTT-SCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcC-CCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45778888888887 67777777888888888888 677665 567778888888888888886677777778888888
Q ss_pred EccCCcCCCC-CCccCCCCCCCCEEecccccCcccCC---hhhhhcCCCCCeEEcc
Q 020203 147 ELSFNNLSGT-IPGSLSKLQKLGALHLDRNKLTGSIP---ESFGTFTGSIPDLYLS 198 (329)
Q Consensus 147 ~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~~L~~L~l~ 198 (329)
++++|++++. .+..++.+++|++|++++|.+++..+ ..+..++ +|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-QLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-TCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-CcccccCC
Confidence 8888888742 23667778888888888888775444 3566666 77777765
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=2.2e-15 Score=121.15 Aligned_cols=114 Identities=27% Similarity=0.332 Sum_probs=85.4
Q ss_pred CCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEe
Q 020203 92 PYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALH 171 (329)
Q Consensus 92 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 171 (329)
++|++|++++ +.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCC-CcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 5788888888 777776666678888888888888888865555677888888888888888866666677888888888
Q ss_pred cccccCcccCChhhhhcCCCCCeEEcccCcCccccc
Q 020203 172 LDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIP 207 (329)
Q Consensus 172 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 207 (329)
+++|.+++..+..+..++ +|++|++++|.+.+..|
T Consensus 107 l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCc-ccCEEEecCCCeeccCc
Confidence 888888744444455566 78888888887775443
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.8e-15 Score=123.48 Aligned_cols=126 Identities=22% Similarity=0.298 Sum_probs=64.3
Q ss_pred CEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEeccc
Q 020203 95 ETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDR 174 (329)
Q Consensus 95 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 174 (329)
+.+++++ +.++. +|..+ .++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~-~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSN-KGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTT-SCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCC-CCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 3455555 44442 33322 235555666665555 4555555555555555555555544444555555555555555
Q ss_pred ccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCc
Q 020203 175 NKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLE 226 (329)
Q Consensus 175 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~ 226 (329)
|.+++..+..+..+. +|++|++++|.++...+..|..+ +|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLK-SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCC-CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555544444455554 55555555555553333334444 4555555555443
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=4.2e-15 Score=119.49 Aligned_cols=85 Identities=31% Similarity=0.364 Sum_probs=34.3
Q ss_pred CCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEc
Q 020203 118 NLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYL 197 (329)
Q Consensus 118 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 197 (329)
+|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+. +|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT-QLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCc-ccCEEEC
Confidence 444444444444433333334444444444444444433333334444444444444444422222233333 3444444
Q ss_pred ccCcCc
Q 020203 198 SHNQLS 203 (329)
Q Consensus 198 ~~n~l~ 203 (329)
++|.++
T Consensus 108 ~~N~l~ 113 (177)
T 2o6r_A 108 DTNQLK 113 (177)
T ss_dssp CSSCCS
T ss_pred cCCcce
Confidence 444443
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=3.6e-17 Score=134.20 Aligned_cols=133 Identities=22% Similarity=0.296 Sum_probs=78.1
Q ss_pred hcCCCCCCEEeccCccCCccCcc------cccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhh
Q 020203 113 IAKLKNLKTLRISWTNISGPVPD------FISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFG 186 (329)
Q Consensus 113 l~~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 186 (329)
+.....++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.+. .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44456666666666666665554 56666666666666666663 44 5566666666666666666 5565555
Q ss_pred hcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchh-hhccCCCCCCEEEccCcccee
Q 020203 187 TFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDAS-FLFGLNKTTQRIDVSRNLLEF 251 (329)
Q Consensus 187 ~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~ 251 (329)
.++ +|++|++++|.+++ +| .+..+ +|++|++++|.+++... ..+..+++|++|++++|.+++
T Consensus 91 ~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 91 VAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 555 66666666666664 33 34444 56666666666654332 344445555555555444443
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=3.4e-17 Score=156.27 Aligned_cols=249 Identities=15% Similarity=0.115 Sum_probs=132.5
Q ss_pred CcEEEEEeCCCC--CCee-cCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCcc----------------
Q 020203 68 NRINSLTIFAGD--LPGQ-IPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTN---------------- 128 (329)
Q Consensus 68 ~~v~~l~l~~~~--l~~~-~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~---------------- 128 (329)
.+++.++++++. +... ++.-+..+++|++|++++|..+.+ ++..+..+++|++|++..+.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 467888888775 2211 111123457788888877433333 44555555555555543321
Q ss_pred ----------CC----ccCcccccCCCCCCEEEccCCcCCCCC-CccCCCCCCCCEEecccc------------------
Q 020203 129 ----------IS----GPVPDFISQLTNLTFLELSFNNLSGTI-PGSLSKLQKLGALHLDRN------------------ 175 (329)
Q Consensus 129 ----------l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n------------------ 175 (329)
+. +.++..+..+++|++|++++|.+++.. ...+..+++|+.|++++|
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCE
Confidence 11 112222234566666666666654321 112345555555555555
Q ss_pred ---------------cCcccCChhhh-hcCCCCCeEEcccCcCcccccccccC-C-ccCEEEee--C----CcCcc----
Q 020203 176 ---------------KLTGSIPESFG-TFTGSIPDLYLSHNQLSGKIPASLGS-M-DFNTIDLS--R----NKLEG---- 227 (329)
Q Consensus 176 ---------------~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~p~~l~~-~-~L~~L~l~--~----n~l~~---- 227 (329)
.+++.....+. .++ +|++|.+..|.+++.....+.. + +|+.|+++ + +.++.
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~-~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCP-KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCT-TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhch-hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 22211111111 133 4555544444444433333321 2 56666666 2 33332
Q ss_pred -chhhhccCCCCCCEEEccCccceeec-CCCC-CCCCCCEEEccCCcCccccchhh-cCCCCCCEEEeecCcCcccCC--
Q 020203 228 -DASFLFGLNKTTQRIDVSRNLLEFNL-SKVE-FPQSLTNLDLNHNKIFGSIPAQI-TSLENLGFLNVSYNRLCGPIP-- 301 (329)
Q Consensus 228 -~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~-~~~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p-- 301 (329)
..+..+..+++|++|++++ .+++.. +.+. .+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++...
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 1122345566666666655 333211 1111 25689999999998876555554 678899999999999865432
Q ss_pred CCCccCccCcccccCCCC
Q 020203 302 VGGKLQSFGYTEYFHNRC 319 (329)
Q Consensus 302 ~~~~l~~L~~l~l~~n~~ 319 (329)
....+++|+.|++++|+.
T Consensus 501 ~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSV 518 (594)
T ss_dssp TGGGGGGSSEEEEESSCC
T ss_pred HHHhCCCCCEEeeeCCCC
Confidence 235678999999998875
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=6.5e-15 Score=118.30 Aligned_cols=133 Identities=14% Similarity=0.225 Sum_probs=78.8
Q ss_pred hcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCC
Q 020203 113 IAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSI 192 (329)
Q Consensus 113 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L 192 (329)
+.++.+|++|++++|.++ .++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..++ +|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP-DL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT-TC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC-CC
Confidence 445666777777777776 3443222233777777777777643 4566777777777777777643333346666 77
Q ss_pred CeEEcccCcCcccccc--cccCC-ccCEEEeeCCcCccchhh---hccCCCCCCEEEccCccce
Q 020203 193 PDLYLSHNQLSGKIPA--SLGSM-DFNTIDLSRNKLEGDASF---LFGLNKTTQRIDVSRNLLE 250 (329)
Q Consensus 193 ~~L~l~~n~l~~~~p~--~l~~~-~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~n~l~ 250 (329)
++|++++|.+. .+|. .+..+ +|+.|++++|.+...... .+..+++|+.|+++.|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777765 3443 44444 566666666666543322 3555555555555555443
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.57 E-value=1.7e-16 Score=151.49 Aligned_cols=130 Identities=12% Similarity=0.166 Sum_probs=77.6
Q ss_pred CcEEEEEeCCCCCCeecCcCCC-CCCCCCEEeCCCCCCCCCC-ChhhhcCCCCCCEEeccCccCCccCccc----ccCCC
Q 020203 68 NRINSLTIFAGDLPGQIPPEVG-DLPYLETLMFHKLPSLTGP-IQPAIAKLKNLKTLRISWTNISGPVPDF----ISQLT 141 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~ 141 (329)
.+++.++++++.+.+..+..+. .+++|++|++++|..++.. ++..+.++++|++|++++|.+++..+.. ...++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 3577888888877666555554 5778888888874344432 3333446788888888888766543332 23567
Q ss_pred CCCEEEccCCc--CCCC-CCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcc
Q 020203 142 NLTFLELSFNN--LSGT-IPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLS 198 (329)
Q Consensus 142 ~L~~L~l~~n~--l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~ 198 (329)
+|++|++++|. +... ++..+..+++|+.|++++|...+.++..+..++ +|++|+++
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~-~L~~L~l~ 243 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP-QLEELGTG 243 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT-TCSEEECS
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC-cceEcccc
Confidence 88888888776 2110 111123457788888877622222444444544 55555543
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=5.4e-15 Score=118.81 Aligned_cols=105 Identities=14% Similarity=0.064 Sum_probs=58.3
Q ss_pred CCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecC--CCCCCCCCCEEEc
Q 020203 191 SIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLS--KVEFPQSLTNLDL 267 (329)
Q Consensus 191 ~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l 267 (329)
+|++|++++|.+++. ..+..+ +|++|++++|.+++.++..+..+++|++|++++|.++.... .+..+++|++|++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 455555555554432 234444 55555555555554444444555556666666665543332 3445566777777
Q ss_pred cCCcCccccch----hhcCCCCCCEEEeecCcCcc
Q 020203 268 NHNKIFGSIPA----QITSLENLGFLNVSYNRLCG 298 (329)
Q Consensus 268 ~~n~l~~~~p~----~~~~l~~L~~L~l~~n~l~~ 298 (329)
++|.++ .+|. .+..+++|+.|++++|....
T Consensus 121 ~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 121 LRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 777765 3444 36677777777777776543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=4.7e-17 Score=133.51 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=107.0
Q ss_pred ccCCCCCCEEEccCCcCCCCCCc------cCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccc
Q 020203 137 ISQLTNLTFLELSFNNLSGTIPG------SLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASL 210 (329)
Q Consensus 137 ~~~l~~L~~L~l~~n~l~~~~p~------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l 210 (329)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+. +|++|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchh
Confidence 44456777777788877777665 77888889999998888884 66 788887 8889999888887 566665
Q ss_pred cCC-ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecC--CCCCCCCCCEEEccCCcCccccch---------
Q 020203 211 GSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLS--KVEFPQSLTNLDLNHNKIFGSIPA--------- 278 (329)
Q Consensus 211 ~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~p~--------- 278 (329)
..+ +|++|++++|.+++.. .+..+++|++|++++|.+++..+ .+..+++|++|++++|.+.+..|.
T Consensus 90 ~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp HHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred hcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 554 7888888888887743 46666777777777777764322 345556677777777776655443
Q ss_pred -hhcCCCCCCEEEeecCcCc
Q 020203 279 -QITSLENLGFLNVSYNRLC 297 (329)
Q Consensus 279 -~~~~l~~L~~L~l~~n~l~ 297 (329)
.+..+++|+.|+ +|.++
T Consensus 168 ~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 168 EVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHCSSCSEEC--CGGGT
T ss_pred HHHHhCCCcEEEC--CcccC
Confidence 255666666665 44443
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=6.5e-15 Score=130.36 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=65.8
Q ss_pred ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCC-EEEccCCcCccccchhhcCCCCCCEEEe
Q 020203 214 DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLT-NLDLNHNKIFGSIPAQITSLENLGFLNV 291 (329)
Q Consensus 214 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~L~l 291 (329)
+|+.+++++|+++......|.++++|++|++..| ++...+. +..+.+|+ .+++.+ .++..-+.+|.++++|+.+++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 6777777777777777777777777777777776 4433333 56667777 777777 555444567777777777777
Q ss_pred ecCcCcccCC-CCCccCccCccc
Q 020203 292 SYNRLCGPIP-VGGKLQSFGYTE 313 (329)
Q Consensus 292 ~~n~l~~~~p-~~~~l~~L~~l~ 313 (329)
++|++...-+ .+.++++|+.+.
T Consensus 305 ~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 305 TGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCccCccchhhhcCCcchhhhc
Confidence 7777765333 245566666543
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=3.5e-14 Score=125.61 Aligned_cols=172 Identities=11% Similarity=0.036 Sum_probs=123.8
Q ss_pred CCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccC-------c----------
Q 020203 116 LKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKL-------T---------- 178 (329)
Q Consensus 116 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l-------~---------- 178 (329)
+++|+.+++.+ .+...-+.+|.++++|+.+++++|.+....+..|..+.++..+....+.. .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777776 66644555677777777777777766644455565555555554443111 0
Q ss_pred ---------ccCCh---------------------------hhh-hcCCCCCeEEcccCcCcccccccccCC-ccCEEEe
Q 020203 179 ---------GSIPE---------------------------SFG-TFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDL 220 (329)
Q Consensus 179 ---------~~~~~---------------------------~~~-~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l 220 (329)
+.++. .+. .+. +|+.+++.+|+++...+.+|..+ +|+.+++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~-~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMP-NLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCT-TCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcC-CCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 00000 111 245 89999999999996656778888 9999999
Q ss_pred eCCcCccchhhhccCCCCCC-EEEccCccceeecC-CCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEe
Q 020203 221 SRNKLEGDASFLFGLNKTTQ-RIDVSRNLLEFNLS-KVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNV 291 (329)
Q Consensus 221 ~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 291 (329)
.+| ++.+....|.++++|+ .+++.. .++...+ .+..+++|+++++++|+++..-+..|.++++|+.++.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 998 8888889999999999 999998 6664443 3788899999999999998666678999999999874
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=4.5e-13 Score=106.85 Aligned_cols=106 Identities=19% Similarity=0.240 Sum_probs=83.2
Q ss_pred EEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccC
Q 020203 71 NSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSF 150 (329)
Q Consensus 71 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 150 (329)
+.++++++.+.. +|..+. ++|++|++++ |.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 356777777754 565553 7888888888 788887788888888888888888888866666678888888888888
Q ss_pred CcCCCCCCccCCCCCCCCEEecccccCccc
Q 020203 151 NNLSGTIPGSLSKLQKLGALHLDRNKLTGS 180 (329)
Q Consensus 151 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 180 (329)
|++++..+..|..+++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888866666688888888888888887743
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=7.4e-13 Score=106.03 Aligned_cols=104 Identities=20% Similarity=0.240 Sum_probs=82.1
Q ss_pred EEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccC
Q 020203 71 NSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSF 150 (329)
Q Consensus 71 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 150 (329)
+.++++++.+. .+|..+. ++|++|++++ |.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 46788888874 5676554 7888888888 788887788888888888888888888865555567888888888888
Q ss_pred CcCCCCCCccCCCCCCCCEEecccccCc
Q 020203 151 NNLSGTIPGSLSKLQKLGALHLDRNKLT 178 (329)
Q Consensus 151 n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 178 (329)
|++++..+..|..+++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8888555555888888888888888877
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=7.5e-13 Score=105.57 Aligned_cols=104 Identities=26% Similarity=0.341 Sum_probs=49.5
Q ss_pred CEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEeccc
Q 020203 95 ETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDR 174 (329)
Q Consensus 95 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 174 (329)
+.+++++ +.++. +|..+ .++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 12 ~~l~~s~-n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSG-KSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTT-SCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCC-CCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4455555 44443 33322 24455555555555544444455555555555555555533333444555555555555
Q ss_pred ccCcccCChhhhhcCCCCCeEEcccCcCc
Q 020203 175 NKLTGSIPESFGTFTGSIPDLYLSHNQLS 203 (329)
Q Consensus 175 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 203 (329)
|.+++..+..+..+. +|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~-~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLK-SLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCT-TCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCC-CCCEEEeCCCCCC
Confidence 555433333344444 4555555555444
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=1.3e-11 Score=111.88 Aligned_cols=197 Identities=11% Similarity=0.063 Sum_probs=93.1
Q ss_pred cCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCC
Q 020203 86 PEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQ 165 (329)
Q Consensus 86 ~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 165 (329)
.+|.+. +|+.+.+.. .++..-..+|.++ +|+.+.+.. .+...-..+|.++++|+.+++.+|+++......|. ..
T Consensus 130 ~aF~~~-~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTTTC-CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred hhcccC-CccEEEeCC--CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 345553 566666654 2444444455553 466666654 44434445566666666666666655522222333 35
Q ss_pred CCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCCccCEEEeeCCcCccchhhhccCCCCCCEEEcc
Q 020203 166 KLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVS 245 (329)
Q Consensus 166 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 245 (329)
+|+.+.+..+ +...-..+|.++. +|+.+.+..+ ++.....+|...+|+.+.+ .+.++......|.++++|+.+++.
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~-~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTS-QLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCT-TCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEE
T ss_pred ccCEEEeCCc-hheehhhHhhCCC-CCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeC
Confidence 5555555533 3323334444444 5555555543 2322233344345555555 233444444455555555555555
Q ss_pred Cccce-----ee-cCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeec
Q 020203 246 RNLLE-----FN-LSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSY 293 (329)
Q Consensus 246 ~n~l~-----~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 293 (329)
+|.+. .. ...+..+++|+.+++.+ .++..-..+|.++.+|+.+++..
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 54443 11 11134444555555552 23322233444555555555533
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=1.8e-12 Score=103.76 Aligned_cols=104 Identities=23% Similarity=0.353 Sum_probs=55.1
Q ss_pred CEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEeccc
Q 020203 95 ETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDR 174 (329)
Q Consensus 95 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 174 (329)
+.+++++ +.++. +|..+. ++|++|++++|.+.+..|..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~-n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQN-IRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCS-SCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCC-CCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4555555 44432 343332 5566666666666655555555566666666666666543333445555666666666
Q ss_pred ccCcccCChhhhhcCCCCCeEEcccCcCc
Q 020203 175 NKLTGSIPESFGTFTGSIPDLYLSHNQLS 203 (329)
Q Consensus 175 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 203 (329)
|.+.+..+..+..+. +|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~-~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLK-SLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCT-TCSEEECCSSCBC
T ss_pred CccceeCHHHhcccc-CCCEEEeCCCCcc
Confidence 655533333344554 5555555555554
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=3e-11 Score=109.46 Aligned_cols=235 Identities=11% Similarity=0.058 Sum_probs=169.9
Q ss_pred EEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEcc
Q 020203 70 INSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELS 149 (329)
Q Consensus 70 v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 149 (329)
++.+++..+ +...-..+|.+. +|+.+.+.. .++..-..+|.++++|+.+++..|.++..-...|. +.+|+.+.+.
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred ccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 455555443 444444567774 799999986 56666667899999999999999999844444555 6899999998
Q ss_pred CCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCc--
Q 020203 150 FNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLE-- 226 (329)
Q Consensus 150 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~-- 226 (329)
.+ ++......|.++++|+.+++..+ ++..-..+|.. . +|+.+.+. +.++.....+|... +|+.+++.+|.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~-~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-S-GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-C-CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-C-CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 55 66455678899999999999875 45344455555 5 89999994 45664556778887 9999999998775
Q ss_pred ---cchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC
Q 020203 227 ---GDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV 302 (329)
Q Consensus 227 ---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 302 (329)
......|.++++|+.+++.. .++..... +..+.+|+.+.+.++ ++..-..+|.++ +|+.+++++|.+....+.
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 45668899999999999995 46544333 677789999999665 554556778888 999999999977643322
Q ss_pred -CCccC-ccCcccccCC
Q 020203 303 -GGKLQ-SFGYTEYFHN 317 (329)
Q Consensus 303 -~~~l~-~L~~l~l~~n 317 (329)
+..++ .+..+.+..+
T Consensus 364 ~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SCCCSCTTCCEEEECGG
T ss_pred cccCCCCCccEEEeCHH
Confidence 23342 4555555543
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=6.3e-12 Score=111.83 Aligned_cols=102 Identities=23% Similarity=0.197 Sum_probs=86.8
Q ss_pred eCCC-CCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccCCcC
Q 020203 75 IFAG-DLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNL 153 (329)
Q Consensus 75 l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 153 (329)
.+++ ++.+ +|. +..+++|++|+|++.|.+.+..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|++
T Consensus 15 ~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 15 CTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred cCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 3344 5554 787 999999999999854789888888899999999999999999988888999999999999999999
Q ss_pred CCCCCccCCCCCCCCEEecccccCcc
Q 020203 154 SGTIPGSLSKLQKLGALHLDRNKLTG 179 (329)
Q Consensus 154 ~~~~p~~l~~l~~L~~L~l~~n~l~~ 179 (329)
++..+..+..++ |+.|++.+|.+..
T Consensus 93 ~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 93 ESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ceeCHHHcccCC-ceEEEeeCCCccC
Confidence 965555566555 9999999999873
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=7e-14 Score=125.61 Aligned_cols=165 Identities=18% Similarity=0.127 Sum_probs=93.9
Q ss_pred CCCCCEEeccCccCCccCcccc----c-CCCCCCEEEccCCcCCCCCCccC-CCCCCCCEEecccccCcccCChhhhh--
Q 020203 116 LKNLKTLRISWTNISGPVPDFI----S-QLTNLTFLELSFNNLSGTIPGSL-SKLQKLGALHLDRNKLTGSIPESFGT-- 187 (329)
Q Consensus 116 l~~L~~L~Ls~n~l~~~~~~~~----~-~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~-- 187 (329)
++.|++|++++|.++......+ . ..++|++|++++|.++......+ ..+++|+.|++++|.++......+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678888888888774332222 2 22578888888887764322222 23456777788777776443333321
Q ss_pred --cCCCCCeEEcccCcCcccc----cccccCC-ccCEEEeeCCcCccc----hhhhccCCCCCCEEEccCccceeecC--
Q 020203 188 --FTGSIPDLYLSHNQLSGKI----PASLGSM-DFNTIDLSRNKLEGD----ASFLFGLNKTTQRIDVSRNLLEFNLS-- 254 (329)
Q Consensus 188 --~~~~L~~L~l~~n~l~~~~----p~~l~~~-~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~-- 254 (329)
..++|++|++++|.++... +..+... +|++|++++|.+... +...+...++|++|++++|.+++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 1126777777777775422 2223333 677777777776543 23445556667777777776653211
Q ss_pred ---CCCCCCCCCEEEccCCcCccccchhh
Q 020203 255 ---KVEFPQSLTNLDLNHNKIFGSIPAQI 280 (329)
Q Consensus 255 ---~~~~~~~L~~L~l~~n~l~~~~p~~~ 280 (329)
.+...++|++|++++|.|++.....+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 12233566777777776664444333
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=3.6e-13 Score=120.98 Aligned_cols=180 Identities=15% Similarity=0.107 Sum_probs=105.4
Q ss_pred CCCCEEeCCCCCCCCCCChhhhcC-----CCCCCEEeccCccCCccCcccc-cCCCCCCEEEccCCcCCCCCCccC----
Q 020203 92 PYLETLMFHKLPSLTGPIQPAIAK-----LKNLKTLRISWTNISGPVPDFI-SQLTNLTFLELSFNNLSGTIPGSL---- 161 (329)
Q Consensus 92 ~~L~~L~l~~~~~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~l---- 161 (329)
+.|+.|++++ +.++......+.. .++|++|+|++|.++......+ ..+++|+.|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAG-VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTT-SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecC-CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4577777777 5665443333322 2577788888877763322222 234567788888887764333332
Q ss_pred -CCCCCCCEEecccccCccc----CChhhhhcCCCCCeEEcccCcCcccc----cccccCC-ccCEEEeeCCcCccc---
Q 020203 162 -SKLQKLGALHLDRNKLTGS----IPESFGTFTGSIPDLYLSHNQLSGKI----PASLGSM-DFNTIDLSRNKLEGD--- 228 (329)
Q Consensus 162 -~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~----p~~l~~~-~L~~L~l~~n~l~~~--- 228 (329)
...++|++|++++|.++.. ++..+...+ +|++|++++|.++... ...+... +|++|++++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2456788888888877632 334445555 7888888888876432 3334444 788888888888753
Q ss_pred -hhhhccCCCCCCEEEccCccceeecCC----CCCCC--CCCEEE--ccCCcCc
Q 020203 229 -ASFLFGLNKTTQRIDVSRNLLEFNLSK----VEFPQ--SLTNLD--LNHNKIF 273 (329)
Q Consensus 229 -~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~--~L~~L~--l~~n~l~ 273 (329)
+...+...++|++|++++|.+++.... ..... .++.+. +..+.+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 234455667888888888887643211 11122 266666 6666654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=2e-11 Score=108.65 Aligned_cols=106 Identities=22% Similarity=0.170 Sum_probs=84.4
Q ss_pred CEEeCCCCCCCCCCChhhhcCCCCCCEEeccC-ccCCccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecc
Q 020203 95 ETLMFHKLPSLTGPIQPAIAKLKNLKTLRISW-TNISGPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLD 173 (329)
Q Consensus 95 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 173 (329)
..+++++.+.++. +|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3467777226765 677 88889999999986 88987777788899999999999999998888888899999999999
Q ss_pred cccCcccCChhhhhcCCCCCeEEcccCcCcc
Q 020203 174 RNKLTGSIPESFGTFTGSIPDLYLSHNQLSG 204 (329)
Q Consensus 174 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 204 (329)
+|.++ .+|....... .|+.|++.+|.+..
T Consensus 89 ~N~l~-~~~~~~~~~~-~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALE-SLSWKTVQGL-SLQELVLSGNPLHC 117 (347)
T ss_dssp SSCCS-CCCSTTTCSC-CCCEEECCSSCCCC
T ss_pred CCccc-eeCHHHcccC-CceEEEeeCCCccC
Confidence 99998 4554444444 58999999988874
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=1.7e-09 Score=96.43 Aligned_cols=155 Identities=14% Similarity=0.168 Sum_probs=75.1
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhh--hcCCCCCeEEccc--CcCccc-----
Q 020203 135 DFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFG--TFTGSIPDLYLSH--NQLSGK----- 205 (329)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~~L~~L~l~~--n~l~~~----- 205 (329)
..+..+|+|+.|++++|.-. .++. + .+++|+.|++..+.+.......+. .++ +|++|+|+. +...+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp-~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLP-NLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCT-TCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCC-CCcEEEEeccccccccchhHHH
Confidence 33445566666666655211 2222 2 256666666666665433333333 344 666666642 111110
Q ss_pred cccccc--CC-ccCEEEeeCCcCccchhhhc---cCCCCCCEEEccCccceee-----cCCCCCCCCCCEEEccCCcCcc
Q 020203 206 IPASLG--SM-DFNTIDLSRNKLEGDASFLF---GLNKTTQRIDVSRNLLEFN-----LSKVEFPQSLTNLDLNHNKIFG 274 (329)
Q Consensus 206 ~p~~l~--~~-~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~ 274 (329)
+...+. .. +|+.|++.+|.+.......+ ..+++|++|+++.|.+++. ...+..+++|+.|++++|.+++
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 011111 12 66777776666654322222 1345666666666666542 1112334567777777776654
Q ss_pred ccchhhcC-CCCCCEEEeecCc
Q 020203 275 SIPAQITS-LENLGFLNVSYNR 295 (329)
Q Consensus 275 ~~p~~~~~-l~~L~~L~l~~n~ 295 (329)
..-..+.. + ...+++++++
T Consensus 322 ~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHc--CCEEEecCCc
Confidence 43333332 2 3456666665
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=7.3e-10 Score=98.78 Aligned_cols=198 Identities=17% Similarity=0.188 Sum_probs=129.8
Q ss_pred CcEEEEEeCCCCCCe-e-------cCcCCCCCCCCCEEeCCCCCCC---------CCCChhhhcCCCCCCEEeccCccCC
Q 020203 68 NRINSLTIFAGDLPG-Q-------IPPEVGDLPYLETLMFHKLPSL---------TGPIQPAIAKLKNLKTLRISWTNIS 130 (329)
Q Consensus 68 ~~v~~l~l~~~~l~~-~-------~~~~l~~l~~L~~L~l~~~~~l---------~~~~~~~l~~l~~L~~L~Ls~n~l~ 130 (329)
.+|+.|.+......| . +..+...+++|+.|.+.. ... .+.+...+..+++|+.|+++++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~-~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGD-IDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECC-CCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecC-cchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 468888887665542 1 133455678999998865 322 1235566788899999999988322
Q ss_pred ccCcccccCCCCCCEEEccCCcCCCCCCccCC--CCCCCCEEeccc--ccCccc-----CChhh--hhcCCCCCeEEccc
Q 020203 131 GPVPDFISQLTNLTFLELSFNNLSGTIPGSLS--KLQKLGALHLDR--NKLTGS-----IPESF--GTFTGSIPDLYLSH 199 (329)
Q Consensus 131 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~L~l~~--n~l~~~-----~~~~~--~~~~~~L~~L~l~~ 199 (329)
.++. + .+++|+.|++..+.+.......+. .+++|+.|+|+. |...+. +...+ ..++ +|++|++.+
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p-~Lr~L~L~~ 261 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP-NLKWLGIVD 261 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCT-TCCEEEEES
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCC-CcCEEeCCC
Confidence 2333 4 389999999999987643333333 789999999863 222111 11122 2345 999999999
Q ss_pred CcCccccccccc---CC-ccCEEEeeCCcCccch----hhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCC
Q 020203 200 NQLSGKIPASLG---SM-DFNTIDLSRNKLEGDA----SFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHN 270 (329)
Q Consensus 200 n~l~~~~p~~l~---~~-~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n 270 (329)
|.+.+..+..+. .+ +|++|+++.|.+...- ...+..+++|+.|+++.|.++...-. +... -...++++++
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a-lg~~~~~~~~ 340 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS-LPMKIDVSDS 340 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH-CCSEEECCSB
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH-cCCEEEecCC
Confidence 998764444443 23 8999999999987642 33345679999999999988743211 1100 1356888887
Q ss_pred c
Q 020203 271 K 271 (329)
Q Consensus 271 ~ 271 (329)
+
T Consensus 341 ~ 341 (362)
T 2ra8_A 341 Q 341 (362)
T ss_dssp C
T ss_pred c
Confidence 6
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.71 E-value=8.7e-10 Score=93.61 Aligned_cols=66 Identities=29% Similarity=0.414 Sum_probs=37.2
Q ss_pred CCCCCCEEeccCccCCc--cCcccccCCCCCCEEEccCCcCCCCCCccCCCCC--CCCEEecccccCcccCC
Q 020203 115 KLKNLKTLRISWTNISG--PVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQ--KLGALHLDRNKLTGSIP 182 (329)
Q Consensus 115 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~~ 182 (329)
++++|+.|+|++|.+++ .++..+..+++|+.|+|++|++++. ..+..+. +|++|++++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 45666666666666664 3334455566666666666666643 1222222 66666666666655444
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.61 E-value=4e-06 Score=75.60 Aligned_cols=238 Identities=14% Similarity=0.057 Sum_probs=116.7
Q ss_pred cEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCC------------------
Q 020203 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNIS------------------ 130 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~------------------ 130 (329)
.++++.+.. ++...-..+|.++.+|+.+++.. .++..-..+|.++..|+.+.+..+--.
T Consensus 72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred CceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence 466666642 34433344677777777777754 243333345566666655554322100
Q ss_pred ---ccCcccccCCCCCCEEEccCCcCCCCCCccCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCccccc
Q 020203 131 ---GPVPDFISQLTNLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIP 207 (329)
Q Consensus 131 ---~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 207 (329)
..-..+|.++.+|+.+.+.++... .....|.++.+|+.+.+..+ +...-...+.... .|+.+.+..+... ...
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~-~L~~i~~~~~~~~-i~~ 224 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI-LLENMEFPNSLYY-LGD 224 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT-TCCBCCCCTTCCE-ECT
T ss_pred cccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhcccc-ccceeecCCCceE-eeh
Confidence 001123555566666666544221 23334555666666665544 2212223333443 4444444433221 111
Q ss_pred ccccCCccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceee-------------------c--CCCCCCCCCCEEE
Q 020203 208 ASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFN-------------------L--SKVEFPQSLTNLD 266 (329)
Q Consensus 208 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-------------------~--~~~~~~~~L~~L~ 266 (329)
..+....|+.+.+... .+......|..+..++.+.+..+...-. + ..+....+|+.+.
T Consensus 225 ~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 225 FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVK 303 (394)
T ss_dssp TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEE
T ss_pred hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccc
Confidence 1111114444444322 1222223344444455554443322210 1 1134456788888
Q ss_pred ccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC--CCccCccCcccccCC
Q 020203 267 LNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV--GGKLQSFGYTEYFHN 317 (329)
Q Consensus 267 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~l~~L~~l~l~~n 317 (329)
+.++ ++..-..++.++.+|+.+++.++ +. .|+. +.+..+|+.+++..+
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred cccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc
Confidence 8655 44334566788899999998754 33 3443 466778888888655
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.61 E-value=2.7e-06 Score=76.73 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=28.3
Q ss_pred hhhccCCCCCCEEEccCccceeecC-CCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCc
Q 020203 230 SFLFGLNKTTQRIDVSRNLLEFNLS-KVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNR 295 (329)
Q Consensus 230 ~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 295 (329)
...|.++.+|+.+++..+ ++.... .+..+.+|+.+.+..+ ++..-..+|.++.+|+.+++.++.
T Consensus 304 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 304 ESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 344445555555555433 221111 1344455555555433 332223445555555555555543
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.60 E-value=2.6e-06 Score=76.82 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=29.7
Q ss_pred CCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccC
Q 020203 87 EVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSF 150 (329)
Q Consensus 87 ~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 150 (329)
+|.++.+|+.+.+.. .+.......|.++.+|+.+++..+ +...-...|..+..|+.+.+..
T Consensus 157 aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 157 AFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred hhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 455556666666654 223223345555666666665544 2222233444555555554443
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=8.6e-09 Score=83.03 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=18.1
Q ss_pred hcCCCCCCEEeccCc-cCCcc----CcccccCCCCCCEEEccCCcCC
Q 020203 113 IAKLKNLKTLRISWT-NISGP----VPDFISQLTNLTFLELSFNNLS 154 (329)
Q Consensus 113 l~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 154 (329)
+...+.|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 344455555555555 44421 2222333344444444444443
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=2.1e-08 Score=80.77 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=82.8
Q ss_pred cCcCCCCCCCCCEEeCCCCC-CCCCC----ChhhhcCCCCCCEEeccCccCCcc----CcccccCCCCCCEEEccCCcCC
Q 020203 84 IPPEVGDLPYLETLMFHKLP-SLTGP----IQPAIAKLKNLKTLRISWTNISGP----VPDFISQLTNLTFLELSFNNLS 154 (329)
Q Consensus 84 ~~~~l~~l~~L~~L~l~~~~-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 154 (329)
+...+...+.|++|++++ + .+... +...+...++|++|+|++|.+... +...+...+.|++|++++|.+.
T Consensus 28 l~~~l~~~~~L~~L~L~~-n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNN-IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTT-CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecC-CCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 334456778899999998 5 66543 345566778999999999998742 3444556678999999999887
Q ss_pred CC----CCccCCCCCCCCEEec--ccccCccc----CChhhhhcCCCCCeEEcccCcCc
Q 020203 155 GT----IPGSLSKLQKLGALHL--DRNKLTGS----IPESFGTFTGSIPDLYLSHNQLS 203 (329)
Q Consensus 155 ~~----~p~~l~~l~~L~~L~l--~~n~l~~~----~~~~~~~~~~~L~~L~l~~n~l~ 203 (329)
+. +...+...++|++|++ ++|.++.. +.+.+.... .|++|++++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~-~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-TLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS-SCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCC-CcCEEeccCCCCC
Confidence 43 3455666778888888 77887643 233444445 7788888777765
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.47 E-value=9.6e-06 Score=73.06 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=37.0
Q ss_pred CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCcccCCC--CCccCccCcccccCCC
Q 020203 256 VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPV--GGKLQSFGYTEYFHNR 318 (329)
Q Consensus 256 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~l~~L~~l~l~~n~ 318 (329)
+....+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++ .|+. +.+..+|+.+++.++.
T Consensus 307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 445567777777654 33233456777777888777544 32 3432 3567778888877764
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.30 E-value=0.00014 Score=65.02 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=63.3
Q ss_pred ccCEEEeeCCcCccchhhhccCCCCCCEEEccCccceeecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeec
Q 020203 214 DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSY 293 (329)
Q Consensus 214 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 293 (329)
.|+.+.+..+ ++......|..+.+|+.+.+..+--.-....+....+|+.+.+.++.++..-..+|.++.+|+.+.+..
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred cceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 5666666554 444455666777777777776543222222356667888888888777644456777888888888865
Q ss_pred CcCcccCCC--CCccCccCcccccC
Q 020203 294 NRLCGPIPV--GGKLQSFGYTEYFH 316 (329)
Q Consensus 294 n~l~~~~p~--~~~l~~L~~l~l~~ 316 (329)
+ +. .|+. +.+..+|+.+++..
T Consensus 320 ~-l~-~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 320 A-LK-TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp T-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred c-cc-EEHHHHhhCCCCCCEEEECC
Confidence 4 32 3333 45666777777654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=9.3e-07 Score=74.95 Aligned_cols=79 Identities=24% Similarity=0.276 Sum_probs=62.4
Q ss_pred CCCCCCEEeCCCCCCCCC--CChhhhcCCCCCCEEeccCccCCccCcccccCCC--CCCEEEccCCcCCCCCCc------
Q 020203 90 DLPYLETLMFHKLPSLTG--PIQPAIAKLKNLKTLRISWTNISGPVPDFISQLT--NLTFLELSFNNLSGTIPG------ 159 (329)
Q Consensus 90 ~l~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p~------ 159 (329)
++++|+.|+|++ |.+++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 478999999999 89988 4566778899999999999999954 2244444 999999999999876652
Q ss_pred -cCCCCCCCCEEe
Q 020203 160 -SLSKLQKLGALH 171 (329)
Q Consensus 160 -~l~~l~~L~~L~ 171 (329)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 245677777765
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=1.7e-06 Score=68.28 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=38.1
Q ss_pred cEEEEEeCCCCCCeecCcCCCCCCCCCEEeCCCCCCCCCCChhhhcCC----CCCCEEeccCcc-CCccCcccccCCCCC
Q 020203 69 RINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKL----KNLKTLRISWTN-ISGPVPDFISQLTNL 143 (329)
Q Consensus 69 ~v~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 143 (329)
++++||++++.++..--..+..+++|+.|+|++|..++..--..+..+ ++|++|++++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 455666655555443233344555555555555444544333333332 245555555542 442222223344445
Q ss_pred CEEEccCC
Q 020203 144 TFLELSFN 151 (329)
Q Consensus 144 ~~L~l~~n 151 (329)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55554444
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=1.8e-05 Score=62.42 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=15.1
Q ss_pred CCCEEEccCCcCCCCCCccCCCCCCCCEEecccc
Q 020203 142 NLTFLELSFNNLSGTIPGSLSKLQKLGALHLDRN 175 (329)
Q Consensus 142 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 175 (329)
+|+.||++++.++..--..+..+++|++|+|+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4455555554444333333344444444444444
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.80 E-value=0.0015 Score=58.16 Aligned_cols=130 Identities=9% Similarity=0.071 Sum_probs=88.7
Q ss_pred cCCCCCCCCEEecccccCcccCChhhhhcCCCCCeEEcccCcCcccccccccCC-ccCEEEeeCCcCccchhhhccCCCC
Q 020203 160 SLSKLQKLGALHLDRNKLTGSIPESFGTFTGSIPDLYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKT 238 (329)
Q Consensus 160 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~ 238 (329)
.+....+|+.+.+..+ +......++.... .|+.+.+..+ ++.....+|... .++.+.+..+ +.......|.++.+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~-~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMK-ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCS-SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCc-cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 3455667777776544 3323345566666 7888888765 443444556655 7888888644 55556677888999
Q ss_pred CCEEEccCccceeecCC-CCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecC
Q 020203 239 TQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYN 294 (329)
Q Consensus 239 L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 294 (329)
|+.+.+.++.++..... +....+|+.+.+..+ ++..-..+|.++.+|+.+.+..+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 99999988887754443 677788999999755 44334567888899998887654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.44 E-value=4.4e-05 Score=61.33 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=42.2
Q ss_pred ccCEEEeeCCcCccc----hhhhccCCCCCCEEEccCccceeec-----CCCCCCCCCCEEEccCC---cCcc----ccc
Q 020203 214 DFNTIDLSRNKLEGD----ASFLFGLNKTTQRIDVSRNLLEFNL-----SKVEFPQSLTNLDLNHN---KIFG----SIP 277 (329)
Q Consensus 214 ~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~~~L~~L~l~~n---~l~~----~~p 277 (329)
.|+.|+|++|.+... +...+...++|++|+|++|.|.... ..+...+.|++|++++| .+.. .+.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 445555555544321 2233444555666666666554321 11344456777777654 3322 233
Q ss_pred hhhcCCCCCCEEEeecCcC
Q 020203 278 AQITSLENLGFLNVSYNRL 296 (329)
Q Consensus 278 ~~~~~l~~L~~L~l~~n~l 296 (329)
..+..-+.|+.|+++.|.+
T Consensus 151 ~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 151 MAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCCcCeEeccCCCc
Confidence 4455556777777776654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.41 E-value=0.00015 Score=54.25 Aligned_cols=55 Identities=24% Similarity=0.237 Sum_probs=35.9
Q ss_pred EEEccCccce--eecCCCCCCCCCCEEEccCCcCccccchhhcCCCCCCEEEeecCcCc
Q 020203 241 RIDVSRNLLE--FNLSKVEFPQSLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLC 297 (329)
Q Consensus 241 ~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 297 (329)
.++.+++.++ ..+.. .+++|++|+|++|+|+...+..+..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677777776 33322 3456778888888777444455667777777777777654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.35 E-value=0.00016 Score=58.09 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=18.5
Q ss_pred hcCCCCCCEEeccCccCCcc----CcccccCCCCCCEEEccCCcCC
Q 020203 113 IAKLKNLKTLRISWTNISGP----VPDFISQLTNLTFLELSFNNLS 154 (329)
Q Consensus 113 l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 154 (329)
+..-+.|+.|+|++|.+... +...+..-+.|+.|+|++|.|.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 33444555555555555421 2222223344555555555444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.86 E-value=0.0019 Score=48.25 Aligned_cols=56 Identities=18% Similarity=0.136 Sum_probs=33.8
Q ss_pred CEEEeeCCcCc-cchhhhccCCCCCCEEEccCccceeecCC-CCCCCCCCEEEccCCcCc
Q 020203 216 NTIDLSRNKLE-GDASFLFGLNKTTQRIDVSRNLLEFNLSK-VEFPQSLTNLDLNHNKIF 273 (329)
Q Consensus 216 ~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~ 273 (329)
..++.++++++ ..+|..+ .+++++|+|++|.++...+. +..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 45666777665 1222222 23577777777777755444 455667777777777664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.20 E-value=12 Score=25.72 Aligned_cols=39 Identities=5% Similarity=0.008 Sum_probs=19.4
Q ss_pred cCCCCCCCCCEEeCCCCCCCCCCChhhhcCCCCCCEEeccC
Q 020203 86 PEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISW 126 (329)
Q Consensus 86 ~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~Ls~ 126 (329)
.+|.++..|+.+.+.. .++..-..+|.++.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 3455555555555544 33333334555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.00 E-value=97 Score=21.03 Aligned_cols=41 Identities=17% Similarity=0.032 Sum_probs=20.2
Q ss_pred ChhhhcCCCCCCEEeccCccCCccCcccccCCCCCCEEEccC
Q 020203 109 IQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSF 150 (329)
Q Consensus 109 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 150 (329)
-..+|.++.+|+.+.+-.+ ++..-..+|.++.+|+.+.+..
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3345555666666655543 2212333455555555555543
Done!