BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020204
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 11/209 (5%)
Query: 38 TLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKIL------SKPIVPTELYRAVRDSQL 91
TL+RFL+AR +V A +M +C WR D IL KP++ + +
Sbjct: 54 TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDK 113
Query: 92 IGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITT 151
G Y E V + T ++ + V + + +YR LP+ S G + T
Sbjct: 114 DGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYR----LPACSRAAGHLVET 169
Query: 152 CVKVLDMTGLKLS-ALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLL 210
++D+ G+ +S A S + + S + YPE+ +YI+N P+ FS +++ KP L
Sbjct: 170 SCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFL 229
Query: 211 QERTRKKIQVLQGSGRDELLKIMDFESLP 239
T KI +L S + ELLK + E+LP
Sbjct: 230 DPVTVSKIFILGSSYQKELLKQIPAENLP 258
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 38/253 (15%)
Query: 6 HEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRA 65
EA+ QF++++ + +N TL+RFL+AR +++ + +M ++ WR
Sbjct: 40 EEALLQFRSILLE---------KNYKERLDDSTLLRFLRARKFDINASVEMFVETERWRE 90
Query: 66 QNEIDKILSKPIVPTELYRAVRDSQLIGMSGY--------SRESLPVFAV---GVGLS-- 112
+ + I+ E + D + I ++ ++ P++ G+ L
Sbjct: 91 EYGANTIIED----YENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKM 146
Query: 113 ---TFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQI 169
T +K + V+ + YR +P+ S + G I T VLD+ G+ LS +
Sbjct: 147 YKITTEKQMLRNLVKEYELFATYR----VPACSRRAGYLIETSCTVLDLKGISLSNAYHV 202
Query: 170 KLLTIISTVDDLN---YPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGR 226
L+ I V D++ YPE+ +YI++ P+ FS +K+VKP L T KI +L S +
Sbjct: 203 --LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYK 260
Query: 227 DELLKIMDFESLP 239
ELLK + E+LP
Sbjct: 261 KELLKQIPIENLP 273
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 38/253 (15%)
Query: 6 HEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRA 65
EA+ QF++++ + +N TL+RFL+AR +++ + +M ++ WR
Sbjct: 40 EEALLQFRSILLE---------KNYKERLDDSTLLRFLRARKFDINASVEMFVETERWRE 90
Query: 66 QNEIDKILSKPIVPTELYRAVRDSQLIGMSGY--------SRESLPVF---AVGVGLS-- 112
+ + I+ E + D + I ++ ++ P++ G+ L
Sbjct: 91 EYGANTIIED----YENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKM 146
Query: 113 ---TFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQI 169
T +K + V+ + YR +P+ S + G I T VLD+ G+ LS +
Sbjct: 147 YKITTEKQMLRNLVKEYELFATYR----VPACSRRAGYLIETSCTVLDLKGISLSNAYHV 202
Query: 170 KLLTIISTVDDLN---YPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGR 226
L+ I V D++ YPE+ +YI++ P+ FS +K+VKP L T KI +L S +
Sbjct: 203 --LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYK 260
Query: 227 DELLKIMDFESLP 239
ELLK + E+LP
Sbjct: 261 KELLKQIPIENLP 273
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 10/206 (4%)
Query: 39 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYS 98
L+R+L+AR ++ K+ ML + +R Q +ID I+S P E+ + GM GY
Sbjct: 38 LLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS--WQPPEVIQQYLSG---GMCGYD 92
Query: 99 RESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSAS---AKHGRPITTCVKV 155
+ PV+ +G Q ++ ++L + K GR + T +
Sbjct: 93 LDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITII 152
Query: 156 LDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQER 213
D GL L L + ++ + + NYPE ++V P +F + ++KP L E
Sbjct: 153 YDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSED 212
Query: 214 TRKKIQVLQGSGRDELLKIMDFESLP 239
TRKKI VL + ++ LLK + + +P
Sbjct: 213 TRKKIMVLGANWKEVLLKHISPDQVP 238
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 10/206 (4%)
Query: 39 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYS 98
L+R+L+AR ++ K+ ML + +R Q +ID I+S P E+ + GM GY
Sbjct: 38 LLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS--WQPPEVIQQYLSG---GMCGYD 92
Query: 99 RESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSAS---AKHGRPITTCVKV 155
+ PV+ +G Q ++ ++L + K GR + T +
Sbjct: 93 LDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITII 152
Query: 156 LDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQER 213
D GL L L + ++ + + NYPE ++V P +F + ++KP L E
Sbjct: 153 YDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSED 212
Query: 214 TRKKIQVLQGSGRDELLKIMDFESLP 239
TRKKI VL + ++ LLK + + +P
Sbjct: 213 TRKKIMVLGANWKEVLLKHISPDQVP 238
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 10/206 (4%)
Query: 39 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYS 98
L+R+L+AR ++ K+ L + +R Q +ID I+S P E+ + G GY
Sbjct: 38 LLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIIS--WQPPEVIQQYLSG---GXCGYD 92
Query: 99 RESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSAS---AKHGRPITTCVKV 155
+ PV+ +G Q ++ ++L + K GR + T +
Sbjct: 93 LDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKXRECELLLQECAHQTTKLGRKVETITII 152
Query: 156 LDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQER 213
D GL L L + ++ + NYPE ++V P +F + ++KP L E
Sbjct: 153 YDCEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSED 212
Query: 214 TRKKIQVLQGSGRDELLKIMDFESLP 239
TRKKI VL + ++ LLK + + +P
Sbjct: 213 TRKKIXVLGANWKEVLLKHISPDQVP 238
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 17/197 (8%)
Query: 39 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELY-RAVRDSQLIGMSGY 97
L+RFL+ARD ++ A ++L + WRA+ P + +L+ R++ G G
Sbjct: 52 LLRFLRARDFDLDLAWRLLKNYYKWRAEC--------PEISADLHPRSIIGLLKAGYHGV 103
Query: 98 SRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVK-VL 156
R P G H + + +R +I + +K +
Sbjct: 104 LRSRDPT-----GSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIF 158
Query: 157 DMTGLKLSALSQI--KLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERT 214
D+ G + S QI + I+ V ++P K +++N P IF A + ++KP L E+
Sbjct: 159 DLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKI 218
Query: 215 RKKIQVLQGSGRDELLK 231
+++I + + + LL+
Sbjct: 219 KERIHMHGNNYKQSLLQ 235
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 17/197 (8%)
Query: 39 LVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELY-RAVRDSQLIGMSGY 97
L+RFL+ARD ++ A ++L + WRA+ P + +L+ R++ G G
Sbjct: 36 LLRFLRARDFDLDLAWRLLKNYYKWRAEC--------PEISADLHPRSIIGLLKAGYHGV 87
Query: 98 SRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVK-VL 156
R P G H + + +R +I + +K +
Sbjct: 88 LRSRDPT-----GSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIF 142
Query: 157 DMTGLKLSALSQI--KLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERT 214
D+ G + S QI + I+ V ++P K +++N P IF A + +KP L E+
Sbjct: 143 DLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKPFLTEKI 202
Query: 215 RKKIQVLQGSGRDELLK 231
+++I + + LL+
Sbjct: 203 KERIHXHGNNYKQSLLQ 219
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 39 LVRFLKARDGNVSKAHKMLMDCLHWRAQN-EIDKILSKPIVPTELYRAVRDSQLIGMSGY 97
+RF++AR NV +A+++L +++R Q E+ LS V + A L Y
Sbjct: 95 FLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTI-EAGYPGVLSSRDKY 153
Query: 98 SRESLPVFAVGVGLS---TFDKA-SVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCV 153
R + +F + S TFD+ +C++ + NE + +G I
Sbjct: 154 GRVVM-LFNIENWQSQEITFDEILQAYCFILEKLLENE---------ETQINGFCIIENF 203
Query: 154 KVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQER 213
K M + ++L L ++ + D ++P + + ++ P+ F+ + VVKP L+ +
Sbjct: 204 KGFTMQ--QAASLRTSDLRKMVDMLQD-SFPARFKAIHFIHQPWYFTTTYNVVKPFLKSK 260
Query: 214 TRKKIQV 220
+++ V
Sbjct: 261 LLERVFV 267
>pdb|2GB7|A Chain A, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
pdb|2GB7|B Chain B, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
pdb|2GB7|C Chain C, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
pdb|2GB7|D Chain D, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
pdb|2FQZ|A Chain A, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
pdb|2FQZ|B Chain B, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
pdb|2FQZ|C Chain C, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
pdb|2FQZ|D Chain D, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
Length = 305
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 174 IISTVDDLNYPEKTNTYYIVN-VPYIFSA---CWKVVKPLLQERTRKKIQVL 221
+ T DL Y +K + Y++ N YI + CWK +P +E T + + L
Sbjct: 28 VYKTFCDLGYDQKNSDYFLNNPSEYIIAMRKNCWKEFEPFEKEFTTRMLSYL 79
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 182 NYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKI 218
+YPE+ + N+P++ K++ P + TR+K+
Sbjct: 232 HYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKL 268
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 204 KVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFC 242
K KP+ +ER +I L+ R LL ++DF+ C
Sbjct: 77 KTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHC 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,946,583
Number of Sequences: 62578
Number of extensions: 344944
Number of successful extensions: 866
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 18
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)