Query 020204
Match_columns 329
No_of_seqs 232 out of 1284
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 13:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1aua_A Phosphatidylinositol tr 100.0 5.4E-48 1.9E-52 354.2 21.8 250 4-268 29-285 (296)
2 3q8g_A CRAL-TRIO domain-contai 100.0 5.7E-49 2E-53 363.6 15.3 250 5-268 39-300 (320)
3 1olm_A SEC14-like protein 2; l 100.0 3E-46 1E-50 356.6 20.6 250 4-271 11-270 (403)
4 1r5l_A Alpha-TTP, protein (alp 100.0 1.7E-44 5.9E-49 325.2 17.6 226 3-250 6-233 (262)
5 3hx3_A Retinaldehyde-binding p 100.0 6.4E-44 2.2E-48 329.6 19.7 232 4-251 57-293 (316)
6 3pg7_A Neurofibromin; SEC lipi 99.3 6E-12 2E-16 111.9 7.9 136 87-238 8-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.1 1.3E-10 4.3E-15 104.9 6.8 135 88-238 28-163 (290)
8 1wgl_A TOLL-interacting protei 90.6 0.52 1.8E-05 31.3 5.1 27 33-59 22-48 (59)
9 1ify_A HHR23A, UV excision rep 81.1 2.8 9.4E-05 26.4 4.6 28 32-59 18-45 (49)
10 1z96_A DNA-damage, UBA-domain 77.0 2.9 9.9E-05 24.8 3.6 25 33-57 15-39 (40)
11 2dhy_A CUE domain-containing p 76.1 3.1 0.00011 28.2 3.8 28 32-59 30-57 (67)
12 1ufz_A Hypothetical protein BA 72.9 6.9 0.00024 27.6 5.0 30 31-60 46-75 (83)
13 2knz_A Ubiquilin-4; cytoplasm, 71.9 3.2 0.00011 26.6 3.0 28 32-59 21-49 (53)
14 1otr_A Protein CUE2; protein-p 70.7 7.7 0.00026 24.5 4.4 27 33-59 17-43 (49)
15 2dah_A Ubiquilin-3; UBA domain 67.4 5.7 0.00019 25.6 3.4 28 33-60 20-48 (54)
16 1q02_A Sequestosome 1; helical 66.1 11 0.00036 24.0 4.3 28 31-58 19-48 (52)
17 1wji_A Tudor domain containing 65.9 8.1 0.00028 25.7 4.1 30 31-60 18-47 (63)
18 2g3q_A Protein YBL047C; endocy 65.3 6.2 0.00021 23.8 3.2 29 31-59 13-41 (43)
19 2jy5_A Ubiquilin-1; UBA, alter 64.6 6.4 0.00022 25.0 3.3 27 32-58 22-49 (52)
20 2di0_A Activating signal coint 62.1 8.5 0.00029 26.3 3.6 28 32-59 25-52 (71)
21 1wr1_B Ubiquitin-like protein 60.8 16 0.00054 23.8 4.7 27 33-59 28-55 (58)
22 1vej_A Riken cDNA 4931431F19; 60.6 16 0.00055 25.1 4.9 27 33-59 40-67 (74)
23 2bwb_A Ubiquitin-like protein 60.3 9 0.00031 23.7 3.3 27 32-58 17-44 (46)
24 1v92_A NSFL1 cofactor P47; 3-h 60.0 7.4 0.00025 23.7 2.9 24 34-57 18-41 (46)
25 2dna_A Unnamed protein product 59.2 10 0.00034 25.6 3.6 27 33-59 30-57 (67)
26 3e21_A HFAF1, FAS-associated f 59.2 7.7 0.00026 24.0 2.7 23 34-56 18-41 (45)
27 1veg_A NEDD8 ultimate buster-1 58.7 12 0.00041 26.4 4.1 29 32-60 39-67 (83)
28 2dak_A Ubiquitin carboxyl-term 57.0 12 0.00042 24.7 3.7 29 33-61 20-48 (63)
29 2cp9_A EF-TS, EF-TSMT, elongat 56.8 17 0.00059 24.2 4.4 41 4-60 8-48 (64)
30 1wgn_A UBAP1, ubiquitin associ 56.4 10 0.00035 25.1 3.1 31 30-60 27-57 (63)
31 2dal_A Protein KIAA0794; FAS a 55.8 13 0.00043 24.6 3.6 25 33-57 27-51 (62)
32 2d9s_A CBL E3 ubiquitin protei 54.8 15 0.00052 23.4 3.6 31 30-60 17-47 (53)
33 1vg5_A RSGI RUH-014, rhomboid 54.7 11 0.00038 25.9 3.2 29 31-59 38-66 (73)
34 2ooa_A E3 ubiquitin-protein li 52.8 22 0.00075 22.6 4.1 31 30-60 19-49 (52)
35 2dam_A ETEA protein; KIAA0887, 52.7 20 0.00069 24.0 4.3 25 34-58 32-56 (67)
36 1wiv_A UBP14, ubiquitin-specif 51.7 14 0.00047 25.3 3.4 28 32-59 39-66 (73)
37 2cwb_A Chimera of immunoglobul 50.4 26 0.00088 26.0 4.9 29 31-59 75-104 (108)
38 2oo9_A E3 ubiquitin-protein li 50.4 40 0.0014 20.7 4.8 31 30-60 12-42 (46)
39 2dzl_A Protein FAM100B; UBA-li 49.2 19 0.00064 24.1 3.6 25 33-57 29-53 (66)
40 1oai_A Nuclear RNA export fact 44.7 29 0.00099 22.6 3.9 29 33-61 19-47 (59)
41 2dai_A Ubadc1, ubiquitin assoc 43.9 24 0.00081 24.8 3.6 29 32-60 39-67 (83)
42 1dv0_A DNA repair protein HHR2 42.7 23 0.00078 21.9 3.0 28 31-58 13-40 (47)
43 1whc_A RSGI RUH-027, UBA/UBX 3 41.7 34 0.0012 22.6 4.0 30 31-60 18-48 (64)
44 2cpw_A CBL-interacting protein 41.3 18 0.00063 24.0 2.6 28 32-59 29-57 (64)
45 2cp8_A NEXT to BRCA1 gene 1 pr 37.8 47 0.0016 21.3 4.0 27 33-59 20-47 (54)
46 3sbx_A Putative uncharacterize 36.2 59 0.002 26.6 5.5 63 169-235 122-189 (189)
47 2dag_A Ubiquitin carboxyl-term 35.3 41 0.0014 22.9 3.7 29 32-60 19-48 (74)
48 2dkl_A Trinucleotide repeat co 33.4 33 0.0011 24.2 3.0 28 32-59 31-58 (85)
49 2crn_A Ubash3A protein; compac 32.6 51 0.0017 21.8 3.7 30 31-60 18-48 (64)
50 2ekk_A UBA domain from E3 ubiq 31.2 26 0.00089 21.4 2.0 26 33-59 20-45 (47)
51 2jp7_A MRNA export factor MEX6 30.6 48 0.0016 21.4 3.2 27 33-59 18-44 (57)
52 2dae_A KIAA0733 protein; mitog 30.6 49 0.0017 22.5 3.2 27 33-59 23-49 (75)
53 2juj_A E3 ubiquitin-protein li 29.7 1E+02 0.0036 19.7 4.5 30 30-59 15-44 (56)
54 1p3q_Q VPS9P, vacuolar protein 28.0 20 0.00068 23.1 1.0 29 30-58 22-50 (54)
55 1xb2_B EF-TS, elongation facto 27.9 80 0.0027 27.7 5.2 41 4-60 3-43 (291)
56 1wj7_A Hypothetical protein (R 27.5 48 0.0016 24.3 3.1 27 33-59 51-77 (104)
57 3qua_A Putative uncharacterize 27.1 96 0.0033 25.5 5.3 63 169-235 131-198 (199)
58 1vek_A UBP14, ubiquitin-specif 23.6 1E+02 0.0034 21.5 4.1 29 32-60 39-68 (84)
59 2oo3_A Protein involved in cat 23.5 35 0.0012 29.9 2.0 33 183-215 233-265 (283)
60 2ka5_A Putative anti-sigma fac 20.6 2.2E+02 0.0075 20.7 6.0 51 153-207 54-104 (125)
61 3e7l_A Transcriptional regulat 20.6 1.7E+02 0.006 18.6 4.9 24 34-57 19-42 (63)
62 2qho_B E3 ubiquitin-protein li 20.5 1.6E+02 0.0056 18.2 5.2 31 28-58 17-47 (53)
63 1aip_C EF-TS, elongation facto 20.1 1.3E+02 0.0046 24.7 4.7 38 6-59 4-41 (196)
No 1
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=5.4e-48 Score=354.23 Aligned_cols=250 Identities=25% Similarity=0.401 Sum_probs=213.4
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHhhhcCCCChHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhCCchhhccCCCCcHHHH
Q 020204 4 VSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELY 83 (329)
Q Consensus 4 ~~~~~i~~lr~ll~~~~~~l~~~~~~~~~~~~d~~llRFL~a~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~~~~ 83 (329)
..+++|++||+++++.. + +...+|.+|+||||||+||+++|.+||+++++||+++++++++.+.. +.+ .
T Consensus 29 ~q~~~l~~lr~~l~~~~--~-------~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~-~~~-~ 97 (296)
T 1aua_A 29 AQEKALAELRKLLEDAG--F-------IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFH-YDE-K 97 (296)
T ss_dssp THHHHHHHHHHHHHHTT--C-------CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCC-CTT-H
T ss_pred HHHHHHHHHHHHHHhcC--C-------CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccc-cCc-H
Confidence 45789999999998753 1 23478999999999999999999999999999999999998875321 111 2
Q ss_pred HHhhhcccccccccCCCCCcEEEEecCCcCcch----hhHHHHHHHHHHHHHHHHhhcchhhhhhcCCCcceEEEEEEcC
Q 020204 84 RAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDK----ASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMT 159 (329)
Q Consensus 84 ~~l~~~~~~~~~g~Dk~G~pV~~~~~~~~~~~~----~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~ 159 (329)
..+++.++.+++|+|++||||+++++|.+++.. .+.+++++++++.+|...+..++.++...|.+++++++|+||+
T Consensus 98 ~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~ 177 (296)
T 1aua_A 98 PLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLK 177 (296)
T ss_dssp HHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred HHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECC
Confidence 345666777899999999999999999987654 3678899999999998877666777777788899999999999
Q ss_pred CCcccccch-HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHhhhcccccccccEEEcCCCChhHHhccCCCCCC
Q 020204 160 GLKLSALSQ-IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 238 (329)
Q Consensus 160 g~~l~~~~~-~~~~~~i~~~~q~~YPe~l~~i~iIN~P~~~~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~L 238 (329)
|+++++++. +++++.++.++|++|||+++++||||+|++|+++|+++||||+++|++||+|+++++.++|.++||+++|
T Consensus 178 g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~L 257 (296)
T 1aua_A 178 GISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENL 257 (296)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhC
Confidence 999999875 4788999999999999999999999999999999999999999999999999987678999999999999
Q ss_pred CccccCCCCCccccCC-CCCCCCCC-CcchHH
Q 020204 239 PHFCRREDSGSSRSSE-NKNCFSLD-HPFHQQ 268 (329)
Q Consensus 239 P~~~gge~GG~~~~~~-~~~c~~~~-~p~~~~ 268 (329)
|++| ||++++.+ .++|...+ .||.+.
T Consensus 258 P~~y----GG~~~~~~~~~g~~~~~~~~w~~~ 285 (296)
T 1aua_A 258 PVKF----GGKSEVDESKGGLYLSDIGPWRDP 285 (296)
T ss_dssp BGGG----TSCBCCCGGGCCSTTCCCSGGGCG
T ss_pred cHHh----CCCCCCCCCCCCceeCCCCCCCCh
Confidence 9999 89988776 45676544 577653
No 2
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=5.7e-49 Score=363.56 Aligned_cols=250 Identities=24% Similarity=0.404 Sum_probs=214.2
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHhhhcCCCChHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhCCchhhccCCCCcH-H--
Q 020204 5 SHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPT-E-- 81 (329)
Q Consensus 5 ~~~~i~~lr~ll~~~~~~l~~~~~~~~~~~~d~~llRFL~a~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~-~-- 81 (329)
.+++|++||+++++... ....+|.+|+||||||+||+++|.+||+++++||+++++|+++.+. .+. +
T Consensus 39 q~~~l~~lR~~l~~~~~---------~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~-~~~~~~~ 108 (320)
T 3q8g_A 39 QEEALLQFRSILLEKNY---------KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDY-ENNKEAE 108 (320)
T ss_dssp HHHHHHHHHHHHHHTTC---------CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHH-HHTHHHH
T ss_pred HHHHHHHHHHHHHhcCC---------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccc-ccccccc
Confidence 56889999999987641 2347899999999999999999999999999999999999887431 111 0
Q ss_pred --HHHHhhhcccccccccCCCCCcEEEEecCCcCcch----hhHHHHHHHHHHHHHHHHhhcchhhhhhcCCCcceEEEE
Q 020204 82 --LYRAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDK----ASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKV 155 (329)
Q Consensus 82 --~~~~l~~~~~~~~~g~Dk~G~pV~~~~~~~~~~~~----~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~I 155 (329)
....+.+.++.+++|+|++||||+++++|.+++.. .+.+++++++++.+|...+..++.++...|..++++++|
T Consensus 109 ~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~I 188 (320)
T 3q8g_A 109 DKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTV 188 (320)
T ss_dssp HHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEE
T ss_pred hhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEE
Confidence 12346677888999999999999999999988764 266788999999999887666667777788889999999
Q ss_pred EEcCCCcccccch-HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHhhhcccccccccEEEcCCCChhHHhccCC
Q 020204 156 LDMTGLKLSALSQ-IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMD 234 (329)
Q Consensus 156 iDl~g~~l~~~~~-~~~~~~i~~~~q~~YPe~l~~i~iIN~P~~~~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~L~k~i~ 234 (329)
+||+|+++++++. +++++.++.++|++||++++++||||+|++|+++|+++||||+++|++||+|+++++.++|.++||
T Consensus 189 iD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~ 268 (320)
T 3q8g_A 189 LDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIP 268 (320)
T ss_dssp EECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSC
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCC
Confidence 9999999999865 478899999999999999999999999999999999999999999999999997666789999999
Q ss_pred CCCCCccccCCCCCccccCC-CCCCCCCC-CcchHH
Q 020204 235 FESLPHFCRREDSGSSRSSE-NKNCFSLD-HPFHQQ 268 (329)
Q Consensus 235 ~~~LP~~~gge~GG~~~~~~-~~~c~~~~-~p~~~~ 268 (329)
+++||++| ||++++++ .++|..++ .|+.+.
T Consensus 269 ~~~LP~~y----GG~~~~~~~~ggc~~~~~gpw~~~ 300 (320)
T 3q8g_A 269 IENLPVKY----GGTSVLHNPNDKFYYSDIGPWRDP 300 (320)
T ss_dssp GGGSBGGG----TSCBCCSSTTSCGGGBCBSGGGCT
T ss_pred hhhCChhh----CCCCCCCCCCCCeecCCCCCCCCh
Confidence 99999999 99999876 67787554 488663
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=3e-46 Score=356.64 Aligned_cols=250 Identities=26% Similarity=0.394 Sum_probs=210.5
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHhhhcCCCChHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhCCchhhccCCCCcHHHH
Q 020204 4 VSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELY 83 (329)
Q Consensus 4 ~~~~~i~~lr~ll~~~~~~l~~~~~~~~~~~~d~~llRFL~a~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~~~~ 83 (329)
..++++++||+++++....++ ..+|.+|+||||||+||+++|.+||+++++||++++++++++ ...+..
T Consensus 11 ~q~~~l~~lr~~l~~~~~~l~--------~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~-- 79 (403)
T 1olm_A 11 RQKEALAKFRENVQDVLPALP--------NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEV-- 79 (403)
T ss_dssp HHHHHHHHHHHHHGGGGGGSS--------CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHH--
T ss_pred HHHHHHHHHHHHHHhhccCCC--------CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHH--
Confidence 356789999999987643231 478999999999999999999999999999999999999876 222322
Q ss_pred HHhhhcccccccccCCCCCcEEEEecCCcCcc----hhhHHHHHHHHHHHHHHHHhhcchhhhhhcCCCcceEEEEEEcC
Q 020204 84 RAVRDSQLIGMSGYSRESLPVFAVGVGLSTFD----KASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMT 159 (329)
Q Consensus 84 ~~l~~~~~~~~~g~Dk~G~pV~~~~~~~~~~~----~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~ 159 (329)
+++....+++|+|++||||+++++|.+++. ..+.+++++++++++|...+. ++.++...|.+++++++|+||+
T Consensus 80 --~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~-~~~~s~~~g~~v~~~~~I~D~~ 156 (403)
T 1olm_A 80 --IQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQE-CAHQTTKLGRKVETITIIYDCE 156 (403)
T ss_dssp --HHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHTSCCCCEEEEEECT
T ss_pred --HHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHH-HHhhHHhhCCcccceEEEEECC
Confidence 344456678999999999999999998875 357789999999999988765 3445566788899999999999
Q ss_pred CCcccccch--HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHhhhcccccccccEEEcCCCChhHHhccCCCCC
Q 020204 160 GLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFES 237 (329)
Q Consensus 160 g~~l~~~~~--~~~~~~i~~~~q~~YPe~l~~i~iIN~P~~~~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~ 237 (329)
|+++++++. +++++.++.++|++|||+++++||||+|++|.++|+++||||+++|++||+|+++++.++|.++||+++
T Consensus 157 g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~ 236 (403)
T 1olm_A 157 GLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQ 236 (403)
T ss_dssp TCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGG
T ss_pred CCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhh
Confidence 999999864 578899999999999999999999999999999999999999999999999997656789999999999
Q ss_pred CCccccCCCCCccccCC-CCCCCC---CCCcchHHHHH
Q 020204 238 LPHFCRREDSGSSRSSE-NKNCFS---LDHPFHQQLYN 271 (329)
Q Consensus 238 LP~~~gge~GG~~~~~~-~~~c~~---~~~p~~~~~y~ 271 (329)
||++| ||++++.+ ++.|.+ .+.+.+++.|.
T Consensus 237 LP~~y----GG~~~~~~~~~~c~~~i~~gg~vp~~~~~ 270 (403)
T 1olm_A 237 VPVEY----GGTMTDPDGNPKCKSKINYGGDIPRKYYV 270 (403)
T ss_dssp SBGGG----TSSBCCTTCCTTCTTTCBCCCCCCGGGCS
T ss_pred Cchhh----CCCcCCCCCCcccccccccCCCCCccccc
Confidence 99999 88887765 556753 44566666664
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=1.7e-44 Score=325.16 Aligned_cols=226 Identities=18% Similarity=0.265 Sum_probs=188.6
Q ss_pred cchHHHHHHHHHHHhhcChHHHHHHhhhcCCCChHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhCCchhhccCCCCcHHH
Q 020204 3 TVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTEL 82 (329)
Q Consensus 3 ~~~~~~i~~lr~ll~~~~~~l~~~~~~~~~~~~d~~llRFL~a~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~~~ 82 (329)
+..+++|++||+++++...+. .+...+|.+|+||||||+||+++|.+||+++++||++++ ++.. .+.+.++
T Consensus 6 ~~~~~~l~~lr~~l~~~~~~~------~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~--~i~~-~~~~~~~ 76 (262)
T 1r5l_A 6 PLLQPGLAALRRRAREAGVPL------APLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP--EISA-DLHPRSI 76 (262)
T ss_dssp ---CTTHHHHHHHHHHHTCCC------SSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH--HHHS-CCCGGGT
T ss_pred HHHHHHHHHHHHHHHhCCccc------CCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh--Hhhh-cCChHHH
Confidence 456778999999998764311 134578999999999999999999999999999999985 3432 2345555
Q ss_pred HHHhhhcccccccccCCCCCcEEEEecCCcCcchhhHHHHHHHHHHHHHHHHhhcchhhhhhcCCCcceEEEEEEcCCCc
Q 020204 83 YRAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLK 162 (329)
Q Consensus 83 ~~~l~~~~~~~~~g~Dk~G~pV~~~~~~~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g~~ 162 (329)
.+.++.+...+++|+|++||||+++++|.+++...+..+++++.++.+|...+. . +.++.|+++|+|++|++
T Consensus 77 ~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~----~----~~~~~g~~~I~D~~g~s 148 (262)
T 1r5l_A 77 IGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQE----V----ETQRNGIKAIFDLEGWQ 148 (262)
T ss_dssp HHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTS----H----HHHHHCEEEEEECTTCC
T ss_pred HHHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhC----h----hhcccceEEEEECCCCC
Confidence 566666667788999999999999999998887777788899999999965331 1 11346899999999999
Q ss_pred ccccch--HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHhhhcccccccccEEEcCCCChhHHhccCCCCCCCc
Q 020204 163 LSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPH 240 (329)
Q Consensus 163 l~~~~~--~~~~~~i~~~~q~~YPe~l~~i~iIN~P~~~~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~LP~ 240 (329)
+++++. ++.++.++.++|++||++++++||||+|++|+++|+++||||+++|++||+|+++++.++|.++|| ++||+
T Consensus 149 ~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 149 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH
Confidence 999753 478999999999999999999999999999999999999999999999999987666899999999 99999
Q ss_pred cccCCCCCcc
Q 020204 241 FCRREDSGSS 250 (329)
Q Consensus 241 ~~gge~GG~~ 250 (329)
+| ||++
T Consensus 228 ~y----GG~~ 233 (262)
T 1r5l_A 228 EY----GGEE 233 (262)
T ss_dssp GG----TCSS
T ss_pred hh----CCCC
Confidence 99 7764
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=6.4e-44 Score=329.59 Aligned_cols=232 Identities=16% Similarity=0.221 Sum_probs=192.8
Q ss_pred chHHHHHHHHHHHhhcCh---HHHHHHhhhcCCCChHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhCCchhhccCCCCcH
Q 020204 4 VSHEAVTQFQALMDQVDE---PLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPT 80 (329)
Q Consensus 4 ~~~~~i~~lr~ll~~~~~---~l~~~~~~~~~~~~d~~llRFL~a~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~ 80 (329)
..+++|++||+|+++... .++...+......+|.+|+||||||+||+++|.+||.++++||++++ ++++ .+.+.
T Consensus 57 ~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~--~~~~-~~~~~ 133 (316)
T 3hx3_A 57 TREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP--ELFD-SLSPE 133 (316)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG--GGTT-TCCHH
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc--hhhc-CCCHH
Confidence 346788888888876542 12211100113478999999999999999999999999999999997 3443 34566
Q ss_pred HHHHHhhhcccccccccCCCCCcEEEEecCCcCcchhhHHHHHHHHHHHHHHHHhhcchhhhhhcCCCcceEEEEEEcCC
Q 020204 81 ELYRAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTG 160 (329)
Q Consensus 81 ~~~~~l~~~~~~~~~g~Dk~G~pV~~~~~~~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g 160 (329)
++...++.+.+.+++|+|++||||+++++|.+++.+.+.+++++++++++|..... .+.+++|+++|+||+|
T Consensus 134 ~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~--------~~~~v~g~v~IiD~~g 205 (316)
T 3hx3_A 134 AVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLEN--------EETQINGFCIIENFKG 205 (316)
T ss_dssp HHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTT
T ss_pred HHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhc--------ccCCcceEEEEEECCC
Confidence 66666777777889999999999999999999988888899999999999976421 1235679999999999
Q ss_pred Ccccccch--HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHhhhcccccccccEEEcCCCChhHHhccCCCCCC
Q 020204 161 LKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 238 (329)
Q Consensus 161 ~~l~~~~~--~~~~~~i~~~~q~~YPe~l~~i~iIN~P~~~~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~L 238 (329)
+++++++. .+.++.++.++|++||++++++||||+|++|.++|+++||||+++|++||+|+++ +.++|.++||+++|
T Consensus 206 ~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~-~~~~L~~~I~~~~L 284 (316)
T 3hx3_A 206 FTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD-DLSGFYQEIDENIL 284 (316)
T ss_dssp CCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET-CCHHHHHHSCGGGS
T ss_pred CCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC-CHHHHHhhCCHhhC
Confidence 99998753 4678999999999999999999999999999999999999999999999999754 46899999999999
Q ss_pred CccccCCCCCccc
Q 020204 239 PHFCRREDSGSSR 251 (329)
Q Consensus 239 P~~~gge~GG~~~ 251 (329)
|++| ||+++
T Consensus 285 P~ey----GG~~~ 293 (316)
T 3hx3_A 285 PSDF----GGTLP 293 (316)
T ss_dssp BGGG----TSSBC
T ss_pred cHhh----CCCCC
Confidence 9999 88754
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.27 E-value=6e-12 Score=111.89 Aligned_cols=136 Identities=13% Similarity=0.050 Sum_probs=110.3
Q ss_pred hhcccccccccCCCCCcEEEEecCCcCcchhhHHHHHHHHHHHHHHHHhhcchhhhhhcCCCcceEEEEEEcCCCccccc
Q 020204 87 RDSQLIGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSAL 166 (329)
Q Consensus 87 ~~~~~~~~~g~Dk~G~pV~~~~~~~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g~~l~~~ 166 (329)
.+...++-.|.|++|+||+++.+++......+.+.++.+.+..++.. . . ....+|+|++|++..+.
T Consensus 8 ~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~---~--------~---~~y~lV~d~T~~~~~n~ 73 (256)
T 3pg7_A 8 KTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPY---Y--------A---KPYEIVVDLTHTGPSNR 73 (256)
T ss_dssp HHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTT---T--------T---SCEEEEEECTTCCGGGC
T ss_pred HHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHh---c--------C---CCeEEEEECCCCCcccC
Confidence 34456667799999999999999998766566777666666544411 1 1 36899999999998887
Q ss_pred chHHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHH-hhhcccccccccEEEcCCCChhHHhccCCCCCC
Q 020204 167 SQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKV-VKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 238 (329)
Q Consensus 167 ~~~~~~~~i~~~~q~~YPe~l~~i~iIN~P~~~~~~~~i-vkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~L 238 (329)
+.++.++.+..++...|...++++||+|+++|+...|+. -++|.+.+..+|+.++++ .++|.++|+.++|
T Consensus 74 p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 74 FKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp CCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred CcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 778899999999999999999999999999999977665 466777788899999875 8999999987765
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.08 E-value=1.3e-10 Score=104.89 Aligned_cols=135 Identities=13% Similarity=0.025 Sum_probs=100.3
Q ss_pred hcccccccccCCCCCcEEEEecCCcCcchhhHHHHHHHHHHHHHHHHhhcchhhhhhcCCCcceEEEEEEcCCCcccccc
Q 020204 88 DSQLIGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALS 167 (329)
Q Consensus 88 ~~~~~~~~g~Dk~G~pV~~~~~~~~~~~~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g~~l~~~~ 167 (329)
....++-.|.|++|+||+++..++......+.+.++.+.+..++.. . . ..+.+|+|++|++..+-+
T Consensus 28 ~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~-------~----~---~~y~lV~D~T~~~~~n~p 93 (290)
T 3peg_A 28 TLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPY-------Y----A---KPYEIVVDLTHTGPSNRF 93 (290)
T ss_dssp GTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTT-------T----T---SCEEEEEECTTCCGGGCC
T ss_pred cCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHh-------c----C---CCeEEEEEcCCCCccCCC
Confidence 4445566689999999999999998766667777666655544311 0 1 368999999999998777
Q ss_pred hHHHHHHHHHhhhccCccccceEEEEcCChhHHHHH-HHhhhcccccccccEEEcCCCChhHHhccCCCCCC
Q 020204 168 QIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACW-KVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL 238 (329)
Q Consensus 168 ~~~~~~~i~~~~q~~YPe~l~~i~iIN~P~~~~~~~-~ivkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~L 238 (329)
.+++++.+..++...|+..++++||+|++++|...+ ...++|.+.+..+|+.+++. ...|..+++++++
T Consensus 94 ~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~L~~~i~~~~~ 163 (290)
T 3peg_A 94 KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 163 (290)
T ss_dssp CHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC----------
T ss_pred hHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHHHHhhCCHHHh
Confidence 788999999999999999999999999999999755 57788888899999998875 4558899987744
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=90.62 E-value=0.52 Score=31.26 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.8
Q ss_pred CCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 33 GYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 33 ~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
+.+...+..-|+++++|++.|+.+|.+
T Consensus 22 ~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 22 NMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 467789999999999999999999864
No 9
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=81.08 E-value=2.8 Score=26.44 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=24.7
Q ss_pred CCCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 32 RGYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 32 ~~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
-+++.....+=|+++++|+++|.+.|-.
T Consensus 18 MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 18 MGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp TTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4789999999999999999999988764
No 10
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=77.02 E-value=2.9 Score=24.75 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.0
Q ss_pred CCChHHHHHHhhhcCCCHHHHHHHH
Q 020204 33 GYPTETLVRFLKARDGNVSKAHKML 57 (329)
Q Consensus 33 ~~~d~~llRFL~a~~~dv~kA~~~l 57 (329)
+++.....+-|+++++|++.|...|
T Consensus 15 Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 15 GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6888888999999999999998765
No 11
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.13 E-value=3.1 Score=28.19 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=24.4
Q ss_pred CCCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 32 RGYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 32 ~~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
++++...+..-|+++++|++.|++.|.+
T Consensus 30 P~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 30 PNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp SSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4577889999999999999999998765
No 12
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=72.87 E-value=6.9 Score=27.55 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=25.8
Q ss_pred cCCCChHHHHHHhhhcCCCHHHHHHHHHHH
Q 020204 31 HRGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (329)
Q Consensus 31 ~~~~~d~~llRFL~a~~~dv~kA~~~l~~~ 60 (329)
.+.+++..|.+-....+||+++|...+-+-
T Consensus 46 GdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 46 GDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp TTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 455789999999999999999999987653
No 13
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=71.89 E-value=3.2 Score=26.61 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.5
Q ss_pred CCC-ChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 32 RGY-PTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 32 ~~~-~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
-++ ++....+-|+++++|+++|++.|..
T Consensus 21 MGF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 21 MGFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp TTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 478 7788899999999999999998764
No 14
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=70.68 E-value=7.7 Score=24.46 Aligned_cols=27 Identities=11% Similarity=0.195 Sum_probs=23.8
Q ss_pred CCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 33 GYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 33 ~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
..+-..+.+-|+++++|+++|..+|.+
T Consensus 17 ~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 17 AISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp SSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 466788999999999999999999875
No 15
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.38 E-value=5.7 Score=25.59 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=23.3
Q ss_pred CCChH-HHHHHhhhcCCCHHHHHHHHHHH
Q 020204 33 GYPTE-TLVRFLKARDGNVSKAHKMLMDC 60 (329)
Q Consensus 33 ~~~d~-~llRFL~a~~~dv~kA~~~l~~~ 60 (329)
++.|. ..++-|++.++|+++|++.|..+
T Consensus 20 GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 20 GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 67655 46999999999999999988754
No 16
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=66.10 E-value=11 Score=24.00 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=23.4
Q ss_pred cCCCCh--HHHHHHhhhcCCCHHHHHHHHH
Q 020204 31 HRGYPT--ETLVRFLKARDGNVSKAHKMLM 58 (329)
Q Consensus 31 ~~~~~d--~~llRFL~a~~~dv~kA~~~l~ 58 (329)
.-++++ .+|-|.|.+.++|+.+|.+.|.
T Consensus 19 ~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 19 SMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp TTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 346765 4999999999999999998864
No 17
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.89 E-value=8.1 Score=25.71 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=25.4
Q ss_pred cCCCChHHHHHHhhhcCCCHHHHHHHHHHH
Q 020204 31 HRGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (329)
Q Consensus 31 ~~~~~d~~llRFL~a~~~dv~kA~~~l~~~ 60 (329)
.-+++.....+-|+++++|+++|...|..+
T Consensus 18 ~MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 18 EMGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp TTTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 347888888999999999999999887754
No 18
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=65.33 E-value=6.2 Score=23.84 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=24.3
Q ss_pred cCCCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 31 HRGYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 31 ~~~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
.-+++.....+=|+++++|++.|...|..
T Consensus 13 ~MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 13 GMGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp TTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 34788888999999999999999987753
No 19
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=64.61 E-value=6.4 Score=25.04 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.3
Q ss_pred CCC-ChHHHHHHhhhcCCCHHHHHHHHH
Q 020204 32 RGY-PTETLVRFLKARDGNVSKAHKMLM 58 (329)
Q Consensus 32 ~~~-~d~~llRFL~a~~~dv~kA~~~l~ 58 (329)
-++ ++....+-|++.++|+++|++.|.
T Consensus 22 MGF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 22 MGFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp TTCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 468 778889999999999999998774
No 20
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=62.10 E-value=8.5 Score=26.31 Aligned_cols=28 Identities=4% Similarity=0.029 Sum_probs=24.3
Q ss_pred CCCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 32 RGYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 32 ~~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
+++.+.++.+.|..++.|++.+..+|-+
T Consensus 25 PdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 25 PDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3577899999999999999999988754
No 21
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=60.85 E-value=16 Score=23.85 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=22.8
Q ss_pred CCC-hHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 33 GYP-TETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 33 ~~~-d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
++. +...++-|++.++|+++|++.|.+
T Consensus 28 GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 28 GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 564 557799999999999999998865
No 22
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=60.56 E-value=16 Score=25.13 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=22.6
Q ss_pred CC-ChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 33 GY-PTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 33 ~~-~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
++ ++...++-|++.++|+++|++.|..
T Consensus 40 GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 40 GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 56 4567799999999999999988764
No 23
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=60.27 E-value=9 Score=23.68 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCCC-hHHHHHHhhhcCCCHHHHHHHHH
Q 020204 32 RGYP-TETLVRFLKARDGNVSKAHKMLM 58 (329)
Q Consensus 32 ~~~~-d~~llRFL~a~~~dv~kA~~~l~ 58 (329)
-++. +...++-|++.++|+++|++.|.
T Consensus 17 MGF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 17 MGFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp TTCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3675 45679999999999999998874
No 24
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=59.98 E-value=7.4 Score=23.73 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=20.9
Q ss_pred CChHHHHHHhhhcCCCHHHHHHHH
Q 020204 34 YPTETLVRFLKARDGNVSKAHKML 57 (329)
Q Consensus 34 ~~d~~llRFL~a~~~dv~kA~~~l 57 (329)
.+......||.+++||++.|+..+
T Consensus 18 ~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 18 AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 467788999999999999998775
No 25
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.21 E-value=10 Score=25.63 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.5
Q ss_pred CCCh-HHHHHHhhhcCCCHHHHHHHHHH
Q 020204 33 GYPT-ETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 33 ~~~d-~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
++.| ...+|-|++.++|+++|++.|.+
T Consensus 30 GF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 30 GFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp TCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5654 46699999999999999998765
No 26
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=59.18 E-value=7.7 Score=23.97 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=19.2
Q ss_pred CCh-HHHHHHhhhcCCCHHHHHHH
Q 020204 34 YPT-ETLVRFLKARDGNVSKAHKM 56 (329)
Q Consensus 34 ~~d-~~llRFL~a~~~dv~kA~~~ 56 (329)
.+| .....||.+++||++.|+..
T Consensus 18 ~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 18 IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 555 78888999999999999754
No 27
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=58.73 E-value=12 Score=26.40 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=25.5
Q ss_pred CCCChHHHHHHhhhcCCCHHHHHHHHHHH
Q 020204 32 RGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (329)
Q Consensus 32 ~~~~d~~llRFL~a~~~dv~kA~~~l~~~ 60 (329)
-+++.....+-|++.++|+++|.+.|..+
T Consensus 39 MGF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 39 MGFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 46888999999999999999999988765
No 28
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.98 E-value=12 Score=24.71 Aligned_cols=29 Identities=14% Similarity=0.449 Sum_probs=25.3
Q ss_pred CCChHHHHHHhhhcCCCHHHHHHHHHHHH
Q 020204 33 GYPTETLVRFLKARDGNVSKAHKMLMDCL 61 (329)
Q Consensus 33 ~~~d~~llRFL~a~~~dv~kA~~~l~~~l 61 (329)
+++.....+=|+++++|++.|.+.|..+.
T Consensus 20 GF~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 20 GFSRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp TCCHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 68888899999999999999999887754
No 29
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=56.79 E-value=17 Score=24.23 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHhhhcCCCChHHHHHHhhhcCCCHHHHHHHHHHH
Q 020204 4 VSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (329)
Q Consensus 4 ~~~~~i~~lr~ll~~~~~~l~~~~~~~~~~~~d~~llRFL~a~~~dv~kA~~~l~~~ 60 (329)
.+.+.|++||+... ..-..+-+-|..+++|+++|+..|+.-
T Consensus 8 it~~~Vk~LRe~TG----------------ag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 8 SSKELLMKLRRKTG----------------YSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CCCHHHHHHHHHHC----------------CCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----------------CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45677777776543 233456677889999999999999754
No 30
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=56.43 E-value=10 Score=25.07 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=26.4
Q ss_pred hcCCCChHHHHHHhhhcCCCHHHHHHHHHHH
Q 020204 30 IHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (329)
Q Consensus 30 ~~~~~~d~~llRFL~a~~~dv~kA~~~l~~~ 60 (329)
+.-++++....|=|++++.|+++|++-|-.|
T Consensus 27 vsMGFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 27 VNMGYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3457999999999999999999999877654
No 31
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.85 E-value=13 Score=24.59 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.5
Q ss_pred CCChHHHHHHhhhcCCCHHHHHHHH
Q 020204 33 GYPTETLVRFLKARDGNVSKAHKML 57 (329)
Q Consensus 33 ~~~d~~llRFL~a~~~dv~kA~~~l 57 (329)
+.+......||.+++||++.|+..+
T Consensus 27 g~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 27 GASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3567888999999999999999775
No 32
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.79 E-value=15 Score=23.42 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=27.4
Q ss_pred hcCCCChHHHHHHhhhcCCCHHHHHHHHHHH
Q 020204 30 IHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (329)
Q Consensus 30 ~~~~~~d~~llRFL~a~~~dv~kA~~~l~~~ 60 (329)
+..+++.....|-|...++|++.|...|+.+
T Consensus 17 ~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 17 MSQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4568999999999999999999999998854
No 33
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=54.66 E-value=11 Score=25.90 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=23.9
Q ss_pred cCCCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 31 HRGYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 31 ~~~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
.-+|+.....+-|+++++|+++|++.|..
T Consensus 38 eMGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 38 AMGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp TTTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34688888899999999999999887653
No 34
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=52.83 E-value=22 Score=22.60 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=27.6
Q ss_pred hcCCCChHHHHHHhhhcCCCHHHHHHHHHHH
Q 020204 30 IHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (329)
Q Consensus 30 ~~~~~~d~~llRFL~a~~~dv~kA~~~l~~~ 60 (329)
+..+++.....|-|+..++|++.|...|...
T Consensus 19 m~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 19 MGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5678999999999999999999999988764
No 35
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.68 E-value=20 Score=24.01 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=20.9
Q ss_pred CChHHHHHHhhhcCCCHHHHHHHHH
Q 020204 34 YPTETLVRFLKARDGNVSKAHKMLM 58 (329)
Q Consensus 34 ~~d~~llRFL~a~~~dv~kA~~~l~ 58 (329)
.+......||.+++||++.|+..+-
T Consensus 32 ~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 32 ESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3556888999999999999988754
No 36
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=51.73 E-value=14 Score=25.35 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 32 RGYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 32 ~~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
-+++.....+-|+++++|++.|+..|..
T Consensus 39 MGF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 39 FGFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3688888888999999999999887754
No 37
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=50.43 E-value=26 Score=26.01 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=24.0
Q ss_pred cCCCCh-HHHHHHhhhcCCCHHHHHHHHHH
Q 020204 31 HRGYPT-ETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 31 ~~~~~d-~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
.-++.| ...++-|++.++|+++|++.|.+
T Consensus 75 eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 75 DMGIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp TTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 346754 68899999999999999998864
No 38
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=50.39 E-value=40 Score=20.74 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=27.1
Q ss_pred hcCCCChHHHHHHhhhcCCCHHHHHHHHHHH
Q 020204 30 IHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (329)
Q Consensus 30 ~~~~~~d~~llRFL~a~~~dv~kA~~~l~~~ 60 (329)
+..+|+.....|-|-..+.|++.|...|+..
T Consensus 12 ~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 12 MSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 5678999999999999999999999998754
No 39
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.23 E-value=19 Score=24.14 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.5
Q ss_pred CCChHHHHHHhhhcCCCHHHHHHHH
Q 020204 33 GYPTETLVRFLKARDGNVSKAHKML 57 (329)
Q Consensus 33 ~~~d~~llRFL~a~~~dv~kA~~~l 57 (329)
+.++.....||.+.+||++.|+..+
T Consensus 29 g~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 29 GCAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp CCCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3567788999999999999998875
No 40
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=44.73 E-value=29 Score=22.62 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=24.9
Q ss_pred CCChHHHHHHhhhcCCCHHHHHHHHHHHH
Q 020204 33 GYPTETLVRFLKARDGNVSKAHKMLMDCL 61 (329)
Q Consensus 33 ~~~d~~llRFL~a~~~dv~kA~~~l~~~l 61 (329)
+.+-.+-.++|...+||+++|.+.+....
T Consensus 19 gmn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 19 GMNLEWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46778999999999999999999977543
No 41
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.91 E-value=24 Score=24.83 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=24.4
Q ss_pred CCCChHHHHHHhhhcCCCHHHHHHHHHHH
Q 020204 32 RGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (329)
Q Consensus 32 ~~~~d~~llRFL~a~~~dv~kA~~~l~~~ 60 (329)
-+++.....+-|+++++|++.|...|..+
T Consensus 39 MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 39 MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 47888888999999999999998887654
No 42
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=42.66 E-value=23 Score=21.88 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=23.9
Q ss_pred cCCCChHHHHHHhhhcCCCHHHHHHHHH
Q 020204 31 HRGYPTETLVRFLKARDGNVSKAHKMLM 58 (329)
Q Consensus 31 ~~~~~d~~llRFL~a~~~dv~kA~~~l~ 58 (329)
.-+++.....+=|.++++|++.|...|-
T Consensus 13 ~mGF~~~~a~~Al~a~~~n~e~A~~~Lf 40 (47)
T 1dv0_A 13 ALGFPESLVIQAYFACEKNENLAANFLL 40 (47)
T ss_dssp TTTCCHHHHHHHHTTTTSCHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4578999999999999999999987653
No 43
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=41.68 E-value=34 Score=22.57 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=25.2
Q ss_pred cCCCChHHHHHHhhhc-CCCHHHHHHHHHHH
Q 020204 31 HRGYPTETLVRFLKAR-DGNVSKAHKMLMDC 60 (329)
Q Consensus 31 ~~~~~d~~llRFL~a~-~~dv~kA~~~l~~~ 60 (329)
.-+++.....+-|+++ ++|++.|...|..+
T Consensus 18 ~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 18 EMGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp TTTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 4578889999999999 69999998887765
No 44
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.35 E-value=18 Score=23.96 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=23.6
Q ss_pred CCCChHHHHHHhhhcCC-CHHHHHHHHHH
Q 020204 32 RGYPTETLVRFLKARDG-NVSKAHKMLMD 59 (329)
Q Consensus 32 ~~~~d~~llRFL~a~~~-dv~kA~~~l~~ 59 (329)
-+++.....+-|+++++ |++.|++.|..
T Consensus 29 MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 29 MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 47888899999999998 99999887653
No 45
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.81 E-value=47 Score=21.26 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=22.6
Q ss_pred CC-ChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 33 GY-PTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 33 ~~-~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
++ |...=.+-|+..++|+++|+..|.+
T Consensus 20 GF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 20 GFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp TCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 56 5567799999999999999988764
No 46
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=36.19 E-value=59 Score=26.59 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHhh-----hcccccccccEEEcCCCChhHHhccCCC
Q 020204 169 IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVK-----PLLQERTRKKIQVLQGSGRDELLKIMDF 235 (329)
Q Consensus 169 ~~~~~~i~~~~q~~YPe~l~~i~iIN~P~~~~~~~~ivk-----pfL~~~t~~Ki~~~~~~~~~~L~k~i~~ 235 (329)
++-+..+++..|-.+- -+.++++|..-+++-++.+++ .|++++.++.+.+.. +.+++.+++.|
T Consensus 122 LdElfe~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d--~~ee~~~~l~~ 189 (189)
T 3sbx_A 122 LDELLDVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVD--NLDDALQACAP 189 (189)
T ss_dssp HHHHHHHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEES--SHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeC--CHHHHHHHhcC
Confidence 3344455555555442 368999999777777776554 589999999999977 48888887754
No 47
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.27 E-value=41 Score=22.93 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=24.3
Q ss_pred CCCChHHHHHHhhhcCC-CHHHHHHHHHHH
Q 020204 32 RGYPTETLVRFLKARDG-NVSKAHKMLMDC 60 (329)
Q Consensus 32 ~~~~d~~llRFL~a~~~-dv~kA~~~l~~~ 60 (329)
-+++.....|-|+++++ |++.|.+.|..+
T Consensus 19 MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 19 MGFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 36888899999999985 899999888765
No 48
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.40 E-value=33 Score=24.19 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=23.3
Q ss_pred CCCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 32 RGYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 32 ~~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
-+++.....+-|+++++|++.|...|..
T Consensus 31 MGF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 31 MGFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3688888888889999999999887764
No 49
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.64 E-value=51 Score=21.77 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=24.6
Q ss_pred cCCCChHHHHHHhhhcCC-CHHHHHHHHHHH
Q 020204 31 HRGYPTETLVRFLKARDG-NVSKAHKMLMDC 60 (329)
Q Consensus 31 ~~~~~d~~llRFL~a~~~-dv~kA~~~l~~~ 60 (329)
.-+++.....|-|++.+. |++.|..-|..+
T Consensus 18 ~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 18 AMGFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp HTSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 357898999999999876 899998887654
No 50
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.25 E-value=26 Score=21.43 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=20.1
Q ss_pred CCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 33 GYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 33 ~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
+++.....+=|++++ |++.|.+.|..
T Consensus 20 GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 20 GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 577778888888886 88888877653
No 51
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=30.62 E-value=48 Score=21.44 Aligned_cols=27 Identities=15% Similarity=0.000 Sum_probs=24.2
Q ss_pred CCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 33 GYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 33 ~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
+.+-++-.++|...+||+++|...+..
T Consensus 18 ~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 18 KLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467789999999999999999999877
No 52
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.57 E-value=49 Score=22.45 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 33 GYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 33 ~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
..+|..+-.+++..+.|.+++..+|.+
T Consensus 23 EvPd~VVsqc~~qN~~Nl~aC~~~L~q 49 (75)
T 2dae_A 23 EVPEVVVSRCMLQNNNNLDACCAVLSQ 49 (75)
T ss_dssp SSCHHHHHHHHTTTTSCSHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhccCHHHHHHHHHH
Confidence 467899999999999999999999875
No 53
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=29.65 E-value=1e+02 Score=19.67 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=26.6
Q ss_pred hcCCCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 30 IHRGYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 30 ~~~~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
+..+|+.....|-|...+.|++.|...|.+
T Consensus 15 ~smGfsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 15 MSQGYSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp HTTTCCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 567899999999999999999999988765
No 54
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=28.00 E-value=20 Score=23.05 Aligned_cols=29 Identities=7% Similarity=0.083 Sum_probs=20.4
Q ss_pred hcCCCChHHHHHHhhhcCCCHHHHHHHHH
Q 020204 30 IHRGYPTETLVRFLKARDGNVSKAHKMLM 58 (329)
Q Consensus 30 ~~~~~~d~~llRFL~a~~~dv~kA~~~l~ 58 (329)
+=++.|.+.+-.-|++++++++.|+..|.
T Consensus 22 MFP~lD~evI~~Vl~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 22 MFPDMDPSLIEDVCIAAASRIGPCVDALL 50 (54)
T ss_dssp HSTTSCHHHHHHHHHHSCC--CGGGC---
T ss_pred HcccCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33568889999999999999998887654
No 55
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=27.91 E-value=80 Score=27.74 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHhhhcCCCChHHHHHHhhhcCCCHHHHHHHHHHH
Q 020204 4 VSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60 (329)
Q Consensus 4 ~~~~~i~~lr~ll~~~~~~l~~~~~~~~~~~~d~~llRFL~a~~~dv~kA~~~l~~~ 60 (329)
.+.+.|++||+.... .-..+-+-|..+++|+++|.+.|+..
T Consensus 3 ~ta~~VKeLRe~TGa----------------gmmdCKKAL~e~~GD~ekAie~LR~~ 43 (291)
T 1xb2_B 3 SSKELLMKLRRKTGY----------------SFINCKKALETCGGDLKQAESWLHKQ 43 (291)
T ss_dssp HHHHHHHHHHHHHCC----------------CHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------------CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 567888888887543 33466778889999999999999863
No 56
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.50 E-value=48 Score=24.34 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.0
Q ss_pred CCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 33 GYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 33 ~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
+++.+....-|..++||+.+|...|..
T Consensus 51 G~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 51 GKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 678888888999999999999888764
No 57
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=27.11 E-value=96 Score=25.50 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHhh-----hcccccccccEEEcCCCChhHHhccCCC
Q 020204 169 IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVK-----PLLQERTRKKIQVLQGSGRDELLKIMDF 235 (329)
Q Consensus 169 ~~~~~~i~~~~q~~YPe~l~~i~iIN~P~~~~~~~~ivk-----pfL~~~t~~Ki~~~~~~~~~~L~k~i~~ 235 (329)
++-+..+++..|-.+. -+.++++|..-+++-++.+++ .|++++.++.+.+..+ .+++.+++.+
T Consensus 131 ldEl~e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~--~~e~~~~l~~ 198 (199)
T 3qua_A 131 LEEFFEAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVDN--VEAALEACAP 198 (199)
T ss_dssp HHHHHHHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEESS--HHHHHHHHSC
T ss_pred HHHHHHHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeCC--HHHHHHHHhc
Confidence 3445555555565543 368999998777888887765 4778888899999764 8888877754
No 58
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=23.60 E-value=1e+02 Score=21.54 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=22.6
Q ss_pred CCCChHHHHHHhhhcC-CCHHHHHHHHHHH
Q 020204 32 RGYPTETLVRFLKARD-GNVSKAHKMLMDC 60 (329)
Q Consensus 32 ~~~~d~~llRFL~a~~-~dv~kA~~~l~~~ 60 (329)
-+++.....|-|++.. +|++.|...|..+
T Consensus 39 MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 39 MGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3688888888888774 7899888887665
No 59
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=23.47 E-value=35 Score=29.95 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=25.7
Q ss_pred CccccceEEEEcCChhHHHHHHHhhhccccccc
Q 020204 183 YPEKTNTYYIVNVPYIFSACWKVVKPLLQERTR 215 (329)
Q Consensus 183 YPe~l~~i~iIN~P~~~~~~~~ivkpfL~~~t~ 215 (329)
+...=..++|||+||-+....+-+-|+|.+...
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l~ 265 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTYFN 265 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHHSS
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHHhC
Confidence 344446799999999999999888888776443
No 60
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=20.63 E-value=2.2e+02 Score=20.74 Aligned_cols=51 Identities=6% Similarity=-0.006 Sum_probs=34.1
Q ss_pred EEEEEcCCCcccccchHHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHhh
Q 020204 153 VKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVK 207 (329)
Q Consensus 153 v~IiDl~g~~l~~~~~~~~~~~i~~~~q~~YPe~l~~i~iIN~P~~~~~~~~ivk 207 (329)
.+|+||++++.-..+.+..+..+...++ ++=.++.++|++.-+.-++.+..
T Consensus 54 ~vvlDls~V~~iDSsGl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~g 104 (125)
T 2ka5_A 54 KIFLVLSDVESIDSFSLGVIVNILKSIS----SSGGFFALVSPNEKVERVLSLTN 104 (125)
T ss_dssp EEEEECTTCSCCCHHHHHHHHHHHHHHH----HHTCEEEEECCCHHHHHHHHHTT
T ss_pred EEEEECCCCCEEcHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHcC
Confidence 5899999988755444444444443333 23477899999988887777644
No 61
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=20.58 E-value=1.7e+02 Score=18.56 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=20.6
Q ss_pred CChHHHHHHhhhcCCCHHHHHHHH
Q 020204 34 YPTETLVRFLKARDGNVSKAHKML 57 (329)
Q Consensus 34 ~~d~~llRFL~a~~~dv~kA~~~l 57 (329)
+....+.+-|..+++|+.+|.+.|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 345788999999999999999987
No 62
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=20.54 E-value=1.6e+02 Score=18.24 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=25.7
Q ss_pred hhhcCCCChHHHHHHhhhcCCCHHHHHHHHH
Q 020204 28 QNIHRGYPTETLVRFLKARDGNVSKAHKMLM 58 (329)
Q Consensus 28 ~~~~~~~~d~~llRFL~a~~~dv~kA~~~l~ 58 (329)
|.+-++-+...+.|=|+..+.||..|+..|.
T Consensus 17 q~VLqgksR~vIirELqrTnLdVN~AvNNlL 47 (53)
T 2qho_B 17 QVVLQGKSRSVIIRELQRTNLDVNLAVNNLL 47 (53)
T ss_dssp HHHSTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHhCccHHHHHHHHh
Confidence 4455677888999999999999999987754
No 63
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=20.13 E-value=1.3e+02 Score=24.65 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcChHHHHHHhhhcCCCChHHHHHHhhhcCCCHHHHHHHHHH
Q 020204 6 HEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMD 59 (329)
Q Consensus 6 ~~~i~~lr~ll~~~~~~l~~~~~~~~~~~~d~~llRFL~a~~~dv~kA~~~l~~ 59 (329)
.+.|++||+.... .=..+-+-|..+++|+++|.+.|+.
T Consensus 4 a~~VKeLRe~TGa----------------gmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 4 MELIKKLREATGA----------------GMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHHCC----------------CHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----------------CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4567777766543 3345667788999999999999986
Done!