BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020205
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|B Chain B, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|C Chain C, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|D Chain D, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|E Chain E, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|F Chain F, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|G Chain G, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3STA|V Chain V, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|A Chain A, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|B Chain B, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|C Chain C, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|E Chain E, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|F Chain F, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|G Chain G, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|I Chain I, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|K Chain K, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|L Chain L, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|M Chain M, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|N Chain N, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|S Chain S, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|T Chain T, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
Length = 197
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/172 (61%), Positives = 135/172 (78%)
Query: 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY 146
D + LL+ RII LGSQ+DD A+ I+SQLLFL A+DS+KDI L+INSPGGSVTAG IY
Sbjct: 21 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 80
Query: 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 206
D ++ K DV TIC+G+AASMG+FLLAAG+KGKR+ +PNA VMIHQPLG A G+AT++ I
Sbjct: 81 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 140
Query: 207 RIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
+ + KLN+ILS TG+ +++I+ DTDRDNF+ A EAKEYGL+D V+
Sbjct: 141 AANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 192
>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3V5E|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
Length = 203
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/172 (61%), Positives = 135/172 (78%)
Query: 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY 146
D + LL+ RII LGSQ+DD A+ I+SQLLFL A+DS+KDI L+INSPGGSVTAG IY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 206
D ++ K DV TIC+G+AASMG+FLLAAG+KGKR+ +PNA VMIHQPLG A G+AT++ I
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 207 RIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
+ + KLN+ILS TG+ +++I+ DTDRDNF+ A EAKEYGL+D V+
Sbjct: 139 AANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190
>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|B Chain B, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|C Chain C, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|D Chain D, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|E Chain E, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|F Chain F, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|G Chain G, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|H Chain H, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|I Chain I, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|J Chain J, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|K Chain K, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|L Chain L, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|M Chain M, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|N Chain N, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|O Chain O, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|P Chain P, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Q Chain Q, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|R Chain R, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|S Chain S, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|T Chain T, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|U Chain U, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|V Chain V, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|W Chain W, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|X Chain X, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Y Chain Y, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Z Chain Z, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|AA Chain a, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|BB Chain b, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
Length = 203
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 135/172 (78%)
Query: 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY 146
D + LL+ RII LGSQ+DD A+ I+SQLLFL A+DS+KDI L+INSPGGSVTAG IY
Sbjct: 19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIY 78
Query: 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 206
D ++ K DV TIC+G+AA+MG+FLLAAG+KGKR+ +PNA VMIHQPLG A G+AT++ I
Sbjct: 79 DTIQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138
Query: 207 RIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
+ + KLN+ILS TG+ +++I+ DTDRDNF+ A EAKEYGL+D V+
Sbjct: 139 AANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190
>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|B Chain B, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|C Chain C, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|D Chain D, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|E Chain E, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|F Chain F, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|G Chain G, Structure Of Clpp From Bacillus Subtilis In Compressed
State
Length = 196
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 132/172 (76%)
Query: 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY 146
D + LL+ RII LGS +DD A+ I+SQLLFL AED +K+I L+INSPGGS+TAGM IY
Sbjct: 18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 77
Query: 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 206
D M+ K VSTIC+G+AASMGAFLLAAG KGKRY +PN+ VMIHQPLG A G+AT++ I
Sbjct: 78 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 137
Query: 207 RIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
+ + + KLNK+L+ TG+P++ IE DTDRDNF A EA EYGL+D ++
Sbjct: 138 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|B Chain B, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|C Chain C, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|D Chain D, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|E Chain E, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|F Chain F, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|G Chain G, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTH|A Chain A, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|B Chain B, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|C Chain C, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|D Chain D, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|E Chain E, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|F Chain F, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|G Chain G, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
Length = 199
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 132/172 (76%)
Query: 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY 146
D + LL+ RII LGS +DD A+ I+SQLLFL AED +K+I L+INSPGGS+TAGM IY
Sbjct: 18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 77
Query: 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 206
D M+ K VSTIC+G+AASMGAFLLAAG KGKRY +PN+ VMIHQPLG A G+AT++ I
Sbjct: 78 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 137
Query: 207 RIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
+ + + KLNK+L+ TG+P++ IE DTDRDNF A EA EYGL+D ++
Sbjct: 138 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|B Chain B, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|C Chain C, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|D Chain D, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|E Chain E, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|F Chain F, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|G Chain G, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
Length = 197
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 132/172 (76%)
Query: 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY 146
D + LL+ RII LGS +DD A+ I+SQLLFL AED +K+I L+INSPGGS+TAGM IY
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 78
Query: 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 206
D M+ K VSTIC+G+AASMGAFLLAAG KGKRY +PN+ VMIHQPLG A G+AT++ I
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 138
Query: 207 RIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
+ + + KLNK+L+ TG+P++ IE DTDRDNF A EA EYGL+D ++
Sbjct: 139 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 190
>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1
pdb|3KTI|B Chain B, Structure Of Clpp In Complex With Adep1
pdb|3KTI|C Chain C, Structure Of Clpp In Complex With Adep1
pdb|3KTI|D Chain D, Structure Of Clpp In Complex With Adep1
pdb|3KTI|E Chain E, Structure Of Clpp In Complex With Adep1
pdb|3KTI|F Chain F, Structure Of Clpp In Complex With Adep1
pdb|3KTI|G Chain G, Structure Of Clpp In Complex With Adep1
pdb|3KTJ|A Chain A, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|B Chain B, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|C Chain C, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|D Chain D, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|E Chain E, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|F Chain F, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|G Chain G, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTK|A Chain A, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|B Chain B, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|C Chain C, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|D Chain D, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|E Chain E, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|F Chain F, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|G Chain G, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|H Chain H, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|I Chain I, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|J Chain J, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|K Chain K, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|L Chain L, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|M Chain M, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|N Chain N, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
Length = 199
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 132/172 (76%)
Query: 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY 146
D + LL+ RII LGS +DD A+ I+SQLLFL AED +K+I L+INSPGGS+TAGM IY
Sbjct: 18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIY 77
Query: 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 206
D M+ K VSTIC+G+AASMGAFLLAAG KGKRY +PN+ VMIHQPLG A G+AT++ I
Sbjct: 78 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEI 137
Query: 207 RIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
+ + + KLNK+L+ TG+P++ IE DTDRDNF A EA EYGL+D ++
Sbjct: 138 AAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|S Chain S, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|T Chain T, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|U Chain U, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|O Chain O, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|P Chain P, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Q Chain Q, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Y Chain Y, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Z Chain Z, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|AA Chain a, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|BB Chain b, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|V Chain V, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|W Chain W, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|X Chain X, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|M Chain M, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|L Chain L, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|K Chain K, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|J Chain J, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|I Chain I, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|H Chain H, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|N Chain N, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|F Chain F, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|E Chain E, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|D Chain D, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|C Chain C, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|B Chain B, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|A Chain A, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|G Chain G, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
Length = 207
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 136/173 (78%)
Query: 86 LDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGI 145
D + LL++R+IFL QV+D A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM I
Sbjct: 31 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSI 90
Query: 146 YDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMS 205
YD M+ K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG G+ATD+
Sbjct: 91 YDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIE 150
Query: 206 IRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
I RE+ K ++N++++ TG+ ++QIE DT+RD F+ A EA EYGLVD+++
Sbjct: 151 IHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|B Chain B, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|C Chain C, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|D Chain D, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|E Chain E, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|F Chain F, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|G Chain G, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|H Chain H, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|I Chain I, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|J Chain J, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|K Chain K, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|L Chain L, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|M Chain M, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|N Chain N, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|O Chain O, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|P Chain P, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Q Chain Q, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|R Chain R, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|S Chain S, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|T Chain T, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|U Chain U, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|V Chain V, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|W Chain W, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|X Chain X, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Y Chain Y, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Z Chain Z, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|AA Chain a, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|BB Chain b, The Structure Of A V6a Variant Of Clpp
Length = 193
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 136/173 (78%)
Query: 86 LDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGI 145
D + LL++R+IFL QV+D A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM I
Sbjct: 17 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSI 76
Query: 146 YDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMS 205
YD M+ K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG G+ATD+
Sbjct: 77 YDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIE 136
Query: 206 IRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
I RE+ K ++N++++ TG+ ++QIE DT+RD F+ A EA EYGLVD+++
Sbjct: 137 IHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 189
>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|B Chain B, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|C Chain C, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|D Chain D, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|E Chain E, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|F Chain F, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|G Chain G, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|H Chain H, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|I Chain I, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|J Chain J, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|K Chain K, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|L Chain L, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|M Chain M, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|N Chain N, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1YG6|A Chain A, Clpp
pdb|1YG6|B Chain B, Clpp
pdb|1YG6|C Chain C, Clpp
pdb|1YG6|D Chain D, Clpp
pdb|1YG6|E Chain E, Clpp
pdb|1YG6|F Chain F, Clpp
pdb|1YG6|G Chain G, Clpp
pdb|1YG6|H Chain H, Clpp
pdb|1YG6|I Chain I, Clpp
pdb|1YG6|J Chain J, Clpp
pdb|1YG6|K Chain K, Clpp
pdb|1YG6|L Chain L, Clpp
pdb|1YG6|M Chain M, Clpp
pdb|1YG6|N Chain N, Clpp
pdb|2FZS|A Chain A, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|B Chain B, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|C Chain C, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|D Chain D, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|E Chain E, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|F Chain F, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|G Chain G, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|H Chain H, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|I Chain I, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|J Chain J, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|K Chain K, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|L Chain L, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|M Chain M, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|N Chain N, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
Length = 193
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 136/173 (78%)
Query: 86 LDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGI 145
D + LL++R+IFL QV+D A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM I
Sbjct: 17 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSI 76
Query: 146 YDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMS 205
YD M+ K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG G+ATD+
Sbjct: 77 YDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIE 136
Query: 206 IRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
I RE+ K ++N++++ TG+ ++QIE DT+RD F+ A EA EYGLVD+++
Sbjct: 137 IHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 189
>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|B Chain B, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|C Chain C, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|D Chain D, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|E Chain E, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|F Chain F, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|G Chain G, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|H Chain H, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|I Chain I, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|J Chain J, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|K Chain K, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|L Chain L, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|M Chain M, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|N Chain N, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|O Chain O, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|P Chain P, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Q Chain Q, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|R Chain R, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|S Chain S, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|T Chain T, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|U Chain U, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|V Chain V, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|W Chain W, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|X Chain X, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Y Chain Y, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Z Chain Z, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|1 Chain 1, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|2 Chain 2, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
Length = 193
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 136/173 (78%)
Query: 86 LDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGI 145
D + LL++R+IFL QV+D A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM I
Sbjct: 17 FDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSI 76
Query: 146 YDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMS 205
YD M+ K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG G+ATD+
Sbjct: 77 YDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIE 136
Query: 206 IRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
I RE+ K ++N++++ TG+ ++QIE DT+RD F+ A EA EYGLVD+++
Sbjct: 137 IHCREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 189
>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|B Chain B, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|C Chain C, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|D Chain D, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|E Chain E, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|F Chain F, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|G Chain G, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|H Chain H, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|I Chain I, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|J Chain J, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|K Chain K, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|L Chain L, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|M Chain M, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|N Chain N, Crystal Structure Of H.Pylori Clpp
pdb|2ZL2|A Chain A, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|B Chain B, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|C Chain C, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|D Chain D, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|E Chain E, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|F Chain F, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|G Chain G, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|H Chain H, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|I Chain I, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|J Chain J, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|K Chain K, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|L Chain L, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|M Chain M, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|N Chain N, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
Length = 196
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 129/172 (75%)
Query: 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY 146
D + LL+ RI+ L +++D A I++QLLFL+AED +KDI L+INSPGG +T+G+ IY
Sbjct: 20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIY 79
Query: 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 206
D M + DVSTIC+G AASMGAFLL+ G+KGKR+ +P++R+MIHQPLG A G+A+D+ I
Sbjct: 80 DTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEI 139
Query: 207 RIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
E+ K +N IL++ +G+ ++QI DTDRD +M A EAKEYGL+D V+
Sbjct: 140 ISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVL 191
>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|B Chain B, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|C Chain C, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|D Chain D, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|E Chain E, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|F Chain F, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|G Chain G, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|H Chain H, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|I Chain I, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|J Chain J, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|K Chain K, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|L Chain L, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|M Chain M, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|N Chain N, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL4|A Chain A, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|B Chain B, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|C Chain C, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|D Chain D, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|E Chain E, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|F Chain F, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|G Chain G, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|H Chain H, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|I Chain I, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|J Chain J, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|K Chain K, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|L Chain L, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|M Chain M, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|N Chain N, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
Length = 196
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 129/172 (75%)
Query: 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY 146
D + LL+ RI+ L +++D A I++QLLFL+AED +KDI L+INSPGG +T+G+ IY
Sbjct: 20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIY 79
Query: 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 206
D M + DVSTIC+G AA+MGAFLL+ G+KGKR+ +P++R+MIHQPLG A G+A+D+ I
Sbjct: 80 DTMNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEI 139
Query: 207 RIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
E+ K +N IL++ +G+ ++QI DTDRD +M A EAKEYGL+D V+
Sbjct: 140 ISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVL 191
>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|B Chain B, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|C Chain C, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|D Chain D, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|E Chain E, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|F Chain F, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|G Chain G, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|H Chain H, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|I Chain I, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|J Chain J, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|K Chain K, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|L Chain L, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|M Chain M, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|N Chain N, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
Length = 206
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 125/167 (74%)
Query: 92 LLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKL 151
LL +RIIFLGS+V+D A+ + +Q+L L AED+ KDI L+INSPGGS++AGM IYD M L
Sbjct: 25 LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVL 84
Query: 152 CKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 211
D++T +G+AASMG FLLAAG+KGKRY +P+AR+++HQPLG G A D++I+ +
Sbjct: 85 APCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQF 144
Query: 212 SYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
+ K ++ ++ + TG+P+++IE D+DRD + A EA EYG VD +I
Sbjct: 145 AVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHII 191
>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
Length = 208
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 125/167 (74%)
Query: 92 LLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKL 151
LL +RIIFLGS+V+D A+ + +Q+L L AED+ KDI L+INSPGGS++AGM IYD M L
Sbjct: 24 LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVL 83
Query: 152 CKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 211
D++T +G+AASMG FLLAAG+KGKRY +P+AR+++HQPLG G A D++I+ +
Sbjct: 84 APCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQF 143
Query: 212 SYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
+ K ++ ++ + TG+P+++IE D+DRD + A EA EYG VD +I
Sbjct: 144 AVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHII 190
>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|H Chain H, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|I Chain I, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|J Chain J, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|K Chain K, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|L Chain L, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|M Chain M, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|N Chain N, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
Length = 200
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 125/167 (74%)
Query: 92 LLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKL 151
LL +RIIFLGS+V+D A+ + +Q+L L AED+ KDI L+INSPGGS++AGM IYD M L
Sbjct: 24 LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVL 83
Query: 152 CKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 211
D++T +G+AASMG FLLAAG+KGKRY +P+AR+++HQPLG G A D++I+ +
Sbjct: 84 APCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQF 143
Query: 212 SYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
+ K ++ ++ + TG+P+++IE D+DRD + A EA EYG VD +I
Sbjct: 144 AVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHII 190
>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|B Chain B, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|C Chain C, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|D Chain D, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|E Chain E, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|F Chain F, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|G Chain G, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
Length = 201
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 128/174 (73%)
Query: 86 LDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGI 145
D + LL++RI+FL +V+D +A+ +I+QLLFL++ED KDI +INSPGG VTAG G+
Sbjct: 21 FDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGXVTAGXGV 80
Query: 146 YDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMS 205
YD + K DVSTIC+GLAAS G+ LLA G+KGKRY +P++++ IHQPLG G+A+D+
Sbjct: 81 YDTXQFIKPDVSTICIGLAASXGSLLLAGGAKGKRYSLPSSQIXIHQPLGGFRGQASDIE 140
Query: 206 IRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVID 259
I + + K +LNK+L+ TG+ ++ I DTDRDNF A EAK YGL+D VI+
Sbjct: 141 IHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFXXADEAKAYGLIDHVIE 194
>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|B Chain B, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|C Chain C, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|D Chain D, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|E Chain E, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|F Chain F, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|G Chain G, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
Length = 215
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 116/177 (65%), Gaps = 1/177 (0%)
Query: 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY 146
D ++RII+L +++ TAD +ISQLL+LD + DI+++INSPGGS+ G+ I
Sbjct: 31 DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSINEGLAIL 89
Query: 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 206
D K+D+ TI GL ASM + +LA+G KGKR +PN R+MIHQPLG A G D+ I
Sbjct: 90 DIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEI 149
Query: 207 RIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDGKP 263
+ +E+ Y K L LS T + V+ IE D+DRD +M+A EAK+YG++D VI+ P
Sbjct: 150 QTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKLP 206
>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|B Chain B, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|C Chain C, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|D Chain D, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|E Chain E, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|F Chain F, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|G Chain G, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
Length = 277
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 118/172 (68%)
Query: 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY 146
D + LLR+RI+ + +DD A +I+QLLFL +E +KK I ++INSPGG VTAG+ IY
Sbjct: 74 DIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIY 133
Query: 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 206
D M+ + T C+G AASMG+ LLAAG+ G R+ +PN+R+MIHQP G A G+ATD++I
Sbjct: 134 DTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAI 193
Query: 207 RIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVI 258
+ E+ K +L I ++ T + +Q IE +RD +M EA+E+G++D V+
Sbjct: 194 QAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 245
>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|B Chain B, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|C Chain C, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|D Chain D, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|E Chain E, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|F Chain F, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|G Chain G, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|H Chain H, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|I Chain I, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|J Chain J, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|K Chain K, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|L Chain L, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|M Chain M, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|N Chain N, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
Length = 195
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 120/171 (70%)
Query: 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY 146
D + LL+ R+IFL QV+D A+ I+Q LFL++E+ KDI L+INSPGG+VT+ IY
Sbjct: 20 DIYSRLLKDRVIFLVGQVEDHXANLAIAQXLFLESENPNKDINLYINSPGGAVTSAXAIY 79
Query: 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 206
D + K DV T+C+G AAS GA LLA G+KGKR+C+P++ V IHQ LG G+ TD+ I
Sbjct: 80 DTXQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXIHQVLGGYQGQGTDIQI 139
Query: 207 RIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAV 257
++ +LN+IL++ TGK ++++E DT+RD F+ EA EYGL+D++
Sbjct: 140 HAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSI 190
>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|B Chain B, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|C Chain C, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|D Chain D, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|E Chain E, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|F Chain F, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|G Chain G, The Structure Of Streptococcus Pneumoniae A153p Clpp
Length = 218
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Query: 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY 146
D + LL+ RII L V+D A+ +I+QLLFLDA+DS KDI L++N+PGGSV+AG+ I
Sbjct: 37 DIYSRLLKDRIIXLTGPVEDNXANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIV 96
Query: 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQP--LGTAGGKATDM 204
D KADV TI G AAS G + ++G+KGKR+ +PNA IHQP G + TDM
Sbjct: 97 DTXNFIKADVQTIVXGXAASXGTVIASSGAKGKRFXLPNAEYXIHQPXGGTGGGTQQTDM 156
Query: 205 SIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAV 257
+I + + L KIL+ +G+ +++ D +RDN+ A E EYG +D +
Sbjct: 157 AIAPEHLLKTRNTLEKILAENSGQSXEKVHADAERDNWXSAQETLEYGFIDEI 209
>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme
pdb|4HNK|B Chain B, Crystal Structure Of An Enzyme
pdb|4HNK|C Chain C, Crystal Structure Of An Enzyme
pdb|4HNK|D Chain D, Crystal Structure Of An Enzyme
pdb|4HNK|E Chain E, Crystal Structure Of An Enzyme
pdb|4HNK|F Chain F, Crystal Structure Of An Enzyme
pdb|4HNK|G Chain G, Crystal Structure Of An Enzyme
pdb|4HNK|H Chain H, Crystal Structure Of An Enzyme
pdb|4HNK|I Chain I, Crystal Structure Of An Enzyme
pdb|4HNK|J Chain J, Crystal Structure Of An Enzyme
pdb|4HNK|K Chain K, Crystal Structure Of An Enzyme
pdb|4HNK|L Chain L, Crystal Structure Of An Enzyme
pdb|4HNK|M Chain M, Crystal Structure Of An Enzyme
pdb|4HNK|N Chain N, Crystal Structure Of An Enzyme
Length = 219
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 98/180 (54%), Gaps = 11/180 (6%)
Query: 91 MLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPG----------GSVT 140
+LL +RIIFL S + ++ IISQLL+L+ E +K I L+INS G +T
Sbjct: 38 LLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGIT 97
Query: 141 AGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTA-GG 199
+ I D + +DV T CLG A + L ++G KG R+ + N+ ++Q
Sbjct: 98 DVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFN 157
Query: 200 KATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVID 259
+AT++ I+ +E+ K K+ +I+S+ T K I +RD + +A EA ++ L+D +++
Sbjct: 158 QATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILE 217
>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|B Chain B, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|C Chain C, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|D Chain D, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|E Chain E, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|F Chain F, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|G Chain G, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
Length = 205
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 98/180 (54%), Gaps = 11/180 (6%)
Query: 91 MLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPG----------GSVT 140
+LL +RIIFL S + ++ IISQLL+L+ E +K I L+INS G +T
Sbjct: 24 LLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGIT 83
Query: 141 AGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTA-GG 199
+ I D + +DV T CLG A + L ++G KG R+ + N+ ++Q
Sbjct: 84 DVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFN 143
Query: 200 KATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVID 259
+AT++ I+ +E+ K K+ +I+S+ T K I +RD + +A EA ++ L+D +++
Sbjct: 144 QATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILE 203
>pdb|3F4B|A Chain A, Crystal Structure Of Plasmodium Berghei
Enoyl-Acyl-Carrier- Protein Reductase With Triclosan
pdb|3F4B|B Chain B, Crystal Structure Of Plasmodium Berghei
Enoyl-Acyl-Carrier- Protein Reductase With Triclosan
pdb|3F4B|C Chain C, Crystal Structure Of Plasmodium Berghei
Enoyl-Acyl-Carrier- Protein Reductase With Triclosan
pdb|3F4B|D Chain D, Crystal Structure Of Plasmodium Berghei
Enoyl-Acyl-Carrier- Protein Reductase With Triclosan
Length = 323
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 221 ILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLV 254
+ S A G+ VQ+ LDT RD ++DA Y L+
Sbjct: 125 VHSLANGREVQKSLLDTSRDGYLDAISKSSYSLI 158
>pdb|3IZS|I Chain I, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|J Chain J, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|J Chain J, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|I Chain I, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|I Chain I, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|I Chain I, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 221
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 186 ARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDA 245
AR+ ++ + T G+ +R+R +H +++NK+LS A +QQ A
Sbjct: 68 ARICANKYMTTVSGRDA-FHLRVRVHPFHVLRINKMLSCAGADRLQQ--------GMRGA 118
Query: 246 WEAKEYGLVDAVIDDGKPGLVAPTSEAIPPPKPRVWHMWNIEGSRKAKKKLPSEHNLL 303
W K +GL A +D G+ T ++ K V +EG R+A+ K P + ++
Sbjct: 119 W-GKPHGLA-ARVDIGQIIFSVRTKDS---NKDVV-----VEGLRRARYKFPGQQKII 166
>pdb|3J0L|J Chain J, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas
Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1
pdb|3J0Q|J Chain J, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas
Fitted To A 10.6a Cryo-Em Map: Rotated Pre State 2
Length = 219
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 186 ARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDA 245
AR+ ++ + T G+ +R+R +H +++NK+LS A +QQ A
Sbjct: 66 ARICANKYMTTVSGRDA-FHLRVRVHPFHVLRINKMLSCAGADRLQQ--------GMRGA 116
Query: 246 WEAKEYGLVDAVIDDGKPGLVAPTSEAIPPPKPRVWHMWNIEGSRKAKKKLPSEHNLL 303
W K +GL A +D G+ T ++ K V +EG R+A+ K P + ++
Sbjct: 117 W-GKPHGLA-ARVDIGQIIFSVRTKDS---NKDVV-----VEGLRRARYKFPGQQKII 164
>pdb|3JYW|I Chain I, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 165
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 186 ARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDA 245
AR+ ++ + T G+ +R+R +H +++NK+LS A +QQ A
Sbjct: 65 ARICANKYMTTVSGRDA-FHLRVRVHPFHVLRINKMLSCAGADRLQQ--------GMRGA 115
Query: 246 WEAKEYGLVDAVIDDGKPGLVAPTSEAIPPPKPRVWHMWNIEGSRKAKKKLPSEHNLL 303
W K +GL A +D G+ T ++ K V +EG R+A+ K P + ++
Sbjct: 116 W-GKPHGLA-ARVDIGQIIFSVRTKDS---NKDVV-----VEGLRRARYKFPGQQKII 163
>pdb|1S1I|I Chain I, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 168
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 186 ARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDA 245
AR+ ++ + T G+ +R+R +H +++NK+LS A +QQ A
Sbjct: 68 ARICANKYMTTVSGRDA-FHLRVRVHPFHVLRINKMLSCAGADRLQQ--------GMRGA 118
Query: 246 WEAKEYGLVDAVIDDGKPGLVAPTSEAIPPPKPRVWHMWNIEGSRKAKKKLPSEHNLL 303
W K +GL A +D G+ T ++ K V +EG R+A+ K P + ++
Sbjct: 119 W-GKPHGLA-ARVDIGQIIFSVRTKDS---NKDVV-----VEGLRRARYKFPGQQKII 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,428,539
Number of Sequences: 62578
Number of extensions: 328405
Number of successful extensions: 846
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 32
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)