Query 020205
Match_columns 329
No_of_seqs 248 out of 1446
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 8.5E-55 1.8E-59 401.5 20.9 248 5-260 10-257 (275)
2 COG0740 ClpP Protease subunit 100.0 5.4E-51 1.2E-55 368.4 20.0 176 86-261 18-193 (200)
3 PRK14513 ATP-dependent Clp pro 100.0 7.3E-49 1.6E-53 356.8 21.7 177 85-261 17-193 (201)
4 PRK14514 ATP-dependent Clp pro 100.0 8.6E-49 1.9E-53 360.7 21.0 177 84-260 43-219 (221)
5 CHL00028 clpP ATP-dependent Cl 100.0 2.7E-48 5.8E-53 353.1 22.1 181 81-261 16-197 (200)
6 PRK12552 ATP-dependent Clp pro 100.0 1.8E-48 3.9E-53 358.3 20.9 178 84-261 19-215 (222)
7 PRK12551 ATP-dependent Clp pro 100.0 3.5E-48 7.7E-53 351.3 21.7 178 84-261 14-191 (196)
8 TIGR00493 clpP ATP-dependent C 100.0 7.5E-45 1.6E-49 328.2 21.4 176 84-259 15-190 (191)
9 PRK14512 ATP-dependent Clp pro 100.0 1.5E-44 3.4E-49 327.7 21.2 180 82-261 10-189 (197)
10 PRK00277 clpP ATP-dependent Cl 100.0 2.9E-43 6.3E-48 319.8 21.3 180 82-261 18-197 (200)
11 PF00574 CLP_protease: Clp pro 100.0 2.6E-43 5.6E-48 313.5 17.1 177 84-260 5-181 (182)
12 PRK12553 ATP-dependent Clp pro 100.0 2.3E-42 5.1E-47 315.5 20.0 178 84-261 24-203 (207)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 2.7E-42 5.9E-47 305.7 18.2 171 87-257 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 3.9E-41 8.5E-46 296.4 19.6 162 96-257 1-162 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 100.0 9.8E-32 2.1E-36 234.5 18.2 156 97-257 2-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 100.0 2.9E-30 6.3E-35 229.9 18.4 156 97-261 3-166 (172)
17 cd00394 Clp_protease_like Case 100.0 1.6E-29 3.4E-34 219.9 18.1 159 97-257 1-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.9 1.5E-26 3.2E-31 207.7 19.2 161 97-261 3-166 (187)
19 cd07021 Clp_protease_NfeD_like 99.9 1E-25 2.2E-30 201.6 18.4 157 97-261 3-172 (178)
20 TIGR00706 SppA_dom signal pept 99.8 4.7E-20 1E-24 168.1 17.6 160 97-260 4-195 (207)
21 COG0616 SppA Periplasmic serin 99.8 1.8E-20 3.8E-25 181.5 15.5 162 97-261 63-263 (317)
22 cd07014 S49_SppA Signal peptid 99.8 1.2E-19 2.6E-24 161.2 16.6 144 108-260 23-169 (177)
23 cd07023 S49_Sppa_N_C Signal pe 99.8 1.5E-19 3.3E-24 164.3 17.1 161 97-260 4-200 (208)
24 TIGR00705 SppA_67K signal pept 99.8 2.7E-19 5.9E-24 185.7 17.6 161 97-260 312-511 (584)
25 cd07022 S49_Sppa_36K_type Sign 99.8 1.2E-18 2.6E-23 159.4 17.7 150 107-260 25-206 (214)
26 PRK10949 protease 4; Provision 99.8 2.7E-18 5.9E-23 179.0 17.2 161 97-260 330-529 (618)
27 cd07019 S49_SppA_1 Signal pept 99.8 7.4E-18 1.6E-22 154.0 16.9 161 97-260 4-203 (211)
28 PRK11778 putative inner membra 99.7 3.5E-17 7.5E-22 159.1 16.3 159 97-261 94-287 (330)
29 cd07018 S49_SppA_67K_type Sign 99.7 2E-16 4.3E-21 145.7 15.3 154 103-260 25-213 (222)
30 COG1030 NfeD Membrane-bound se 99.7 2.9E-16 6.3E-21 156.1 14.6 165 97-270 30-197 (436)
31 PF01972 SDH_sah: Serine dehyd 99.5 1.3E-13 2.8E-18 130.3 15.0 90 102-196 70-159 (285)
32 TIGR00705 SppA_67K signal pept 99.4 1.1E-11 2.3E-16 129.3 15.0 152 107-261 76-270 (584)
33 PF01343 Peptidase_S49: Peptid 99.3 2.2E-11 4.7E-16 106.3 12.3 109 149-260 2-140 (154)
34 PRK10949 protease 4; Provision 99.2 9.8E-11 2.1E-15 122.7 14.9 153 106-261 94-289 (618)
35 cd06558 crotonase-like Crotona 98.9 3.4E-08 7.4E-13 87.6 14.3 139 103-260 22-181 (195)
36 COG3904 Predicted periplasmic 98.7 2.1E-07 4.5E-12 85.2 12.3 159 91-256 70-236 (245)
37 PRK06688 enoyl-CoA hydratase; 98.7 3.1E-07 6.6E-12 86.1 13.6 139 104-261 29-185 (259)
38 PRK05869 enoyl-CoA hydratase; 98.7 6E-07 1.3E-11 82.9 15.3 139 104-261 31-188 (222)
39 PRK06495 enoyl-CoA hydratase; 98.7 5.5E-07 1.2E-11 84.6 15.0 142 98-261 17-183 (257)
40 PRK08258 enoyl-CoA hydratase; 98.6 9E-07 2E-11 84.1 15.4 140 104-261 41-203 (277)
41 PRK07511 enoyl-CoA hydratase; 98.6 8.5E-07 1.8E-11 83.3 14.8 139 104-261 27-187 (260)
42 PRK03580 carnitinyl-CoA dehydr 98.6 9.2E-07 2E-11 83.2 14.5 139 104-261 26-183 (261)
43 PRK09674 enoyl-CoA hydratase-i 98.6 1.4E-06 3E-11 81.8 15.3 140 103-261 25-181 (255)
44 PRK06190 enoyl-CoA hydratase; 98.6 1.7E-06 3.8E-11 81.6 15.9 139 104-261 28-183 (258)
45 PRK06143 enoyl-CoA hydratase; 98.6 1.1E-06 2.4E-11 82.7 14.0 138 104-261 31-188 (256)
46 PF00378 ECH: Enoyl-CoA hydrat 98.6 1.9E-06 4.2E-11 79.8 14.5 138 103-261 21-179 (245)
47 PRK11423 methylmalonyl-CoA dec 98.5 1.7E-06 3.7E-11 81.5 14.0 138 104-261 28-185 (261)
48 PRK08138 enoyl-CoA hydratase; 98.5 2.7E-06 5.8E-11 80.1 15.0 139 104-261 32-187 (261)
49 PRK07938 enoyl-CoA hydratase; 98.5 2.4E-06 5.2E-11 80.1 14.4 136 104-261 25-180 (249)
50 PRK05980 enoyl-CoA hydratase; 98.5 2E-06 4.2E-11 80.8 13.9 139 104-261 27-189 (260)
51 TIGR03210 badI 2-ketocyclohexa 98.5 2.6E-06 5.7E-11 80.0 14.7 139 104-261 26-183 (256)
52 PRK09076 enoyl-CoA hydratase; 98.5 3.1E-06 6.8E-11 79.5 15.2 139 104-261 26-184 (258)
53 PRK05809 3-hydroxybutyryl-CoA 98.5 1.9E-06 4.1E-11 80.9 13.7 137 104-261 28-186 (260)
54 PRK06210 enoyl-CoA hydratase; 98.5 2.5E-06 5.5E-11 80.6 14.6 139 104-261 30-197 (272)
55 PRK08150 enoyl-CoA hydratase; 98.5 3.7E-06 8.1E-11 79.0 15.7 137 104-261 26-181 (255)
56 PRK08260 enoyl-CoA hydratase; 98.5 2E-06 4.3E-11 82.5 13.9 140 103-261 27-202 (296)
57 PLN02888 enoyl-CoA hydratase 98.5 3.3E-06 7.2E-11 79.9 15.1 139 104-261 34-188 (265)
58 PRK07110 polyketide biosynthes 98.5 2.5E-06 5.4E-11 79.9 14.0 140 103-261 28-183 (249)
59 PRK05981 enoyl-CoA hydratase; 98.5 2.8E-06 6E-11 80.1 14.3 139 104-261 28-192 (266)
60 PRK07509 enoyl-CoA hydratase; 98.5 1.9E-06 4.1E-11 81.0 13.0 139 103-260 26-190 (262)
61 PRK07854 enoyl-CoA hydratase; 98.5 3.4E-06 7.3E-11 78.8 14.6 137 103-259 23-173 (243)
62 TIGR01929 menB naphthoate synt 98.5 2.4E-06 5.2E-11 80.4 13.6 138 104-261 27-186 (259)
63 PRK07658 enoyl-CoA hydratase; 98.5 3.4E-06 7.4E-11 79.0 14.6 140 103-261 24-183 (257)
64 PRK08139 enoyl-CoA hydratase; 98.5 4.2E-06 9E-11 79.2 15.1 138 104-261 35-192 (266)
65 PLN02921 naphthoate synthase 98.5 4.1E-06 8.9E-11 81.9 15.5 139 104-261 91-250 (327)
66 PRK07468 enoyl-CoA hydratase; 98.5 2.6E-06 5.6E-11 80.3 13.5 138 104-261 29-188 (262)
67 PRK05864 enoyl-CoA hydratase; 98.5 2.8E-06 6.2E-11 80.6 13.9 140 104-261 34-199 (276)
68 PRK06023 enoyl-CoA hydratase; 98.5 2.6E-06 5.7E-11 79.7 13.4 140 103-261 29-186 (251)
69 PLN02600 enoyl-CoA hydratase 98.5 4.8E-06 1E-10 78.1 15.1 139 104-261 19-177 (251)
70 PLN02664 enoyl-CoA hydratase/d 98.5 3.9E-06 8.5E-11 79.6 14.6 138 104-260 32-199 (275)
71 PRK07396 dihydroxynaphthoic ac 98.5 4E-06 8.6E-11 79.6 14.6 140 103-261 36-196 (273)
72 PLN03214 probable enoyl-CoA hy 98.5 2.4E-06 5.3E-11 81.4 13.1 141 103-261 34-197 (278)
73 TIGR03189 dienoyl_CoA_hyt cycl 98.5 4.6E-06 9.9E-11 78.3 14.6 138 104-261 24-177 (251)
74 PRK07327 enoyl-CoA hydratase; 98.5 3.4E-06 7.3E-11 79.8 13.7 139 104-261 36-195 (268)
75 PRK09245 enoyl-CoA hydratase; 98.5 2.4E-06 5.1E-11 80.5 12.6 139 104-261 27-192 (266)
76 PRK06127 enoyl-CoA hydratase; 98.5 6.4E-06 1.4E-10 77.9 15.5 139 104-261 35-195 (269)
77 PRK06494 enoyl-CoA hydratase; 98.4 6.1E-06 1.3E-10 77.6 15.1 139 104-261 28-183 (259)
78 PRK05995 enoyl-CoA hydratase; 98.4 4.8E-06 1E-10 78.3 14.3 137 104-260 28-186 (262)
79 PRK06072 enoyl-CoA hydratase; 98.4 6.1E-06 1.3E-10 77.2 14.7 135 103-257 23-173 (248)
80 TIGR02280 PaaB1 phenylacetate 98.4 3.8E-06 8.2E-11 78.8 13.3 138 104-261 23-182 (256)
81 PRK08290 enoyl-CoA hydratase; 98.4 3E-06 6.5E-11 81.2 12.8 137 104-261 28-205 (288)
82 PRK05862 enoyl-CoA hydratase; 98.4 6.8E-06 1.5E-10 77.1 15.0 140 103-261 27-183 (257)
83 PRK06142 enoyl-CoA hydratase; 98.4 5.5E-06 1.2E-10 78.4 14.4 138 104-260 30-197 (272)
84 PRK07657 enoyl-CoA hydratase; 98.4 6.6E-06 1.4E-10 77.3 14.7 137 104-261 28-186 (260)
85 PRK09120 p-hydroxycinnamoyl Co 98.4 6.9E-06 1.5E-10 78.1 14.9 140 103-261 31-193 (275)
86 PRK06144 enoyl-CoA hydratase; 98.4 4.6E-06 9.9E-11 78.7 13.5 141 103-261 31-192 (262)
87 PRK06213 enoyl-CoA hydratase; 98.4 1.1E-05 2.4E-10 74.5 14.9 136 103-261 25-181 (229)
88 PRK08252 enoyl-CoA hydratase; 98.4 1.4E-05 3E-10 75.0 15.6 139 104-261 27-180 (254)
89 PRK08140 enoyl-CoA hydratase; 98.4 6.4E-06 1.4E-10 77.4 13.4 139 103-261 27-188 (262)
90 PRK06563 enoyl-CoA hydratase; 98.4 9.7E-06 2.1E-10 76.0 14.6 139 104-261 23-181 (255)
91 PRK08788 enoyl-CoA hydratase; 98.4 7.3E-06 1.6E-10 78.8 13.9 139 104-261 40-210 (287)
92 PRK08321 naphthoate synthase; 98.4 1.3E-05 2.9E-10 77.3 15.6 139 104-261 49-225 (302)
93 PRK07260 enoyl-CoA hydratase; 98.4 6.2E-06 1.3E-10 77.3 12.9 137 104-261 26-187 (255)
94 TIGR03200 dearomat_oah 6-oxocy 98.4 8.3E-06 1.8E-10 80.7 14.1 141 104-263 52-215 (360)
95 PRK07799 enoyl-CoA hydratase; 98.3 1.6E-05 3.4E-10 75.0 15.1 139 104-261 29-189 (263)
96 PRK05674 gamma-carboxygeranoyl 98.3 1.2E-05 2.6E-10 76.0 14.3 137 104-260 30-188 (265)
97 PLN02267 enoyl-CoA hydratase/i 98.3 2.1E-05 4.5E-10 73.4 15.7 139 104-260 23-184 (239)
98 PRK12478 enoyl-CoA hydratase; 98.3 7E-06 1.5E-10 79.1 12.6 135 104-261 29-198 (298)
99 PRK08259 enoyl-CoA hydratase; 98.3 1.7E-05 3.7E-10 74.5 14.6 139 104-261 27-182 (254)
100 PRK08272 enoyl-CoA hydratase; 98.3 1.5E-05 3.4E-10 76.6 14.5 136 104-261 34-213 (302)
101 PRK07112 polyketide biosynthes 98.3 1.9E-05 4.2E-10 74.1 14.1 136 104-261 28-184 (255)
102 PRK05870 enoyl-CoA hydratase; 98.3 7.1E-06 1.5E-10 76.7 10.9 136 103-258 26-181 (249)
103 PRK07659 enoyl-CoA hydratase; 98.2 1.8E-05 4E-10 74.4 13.0 135 104-258 30-184 (260)
104 PRK07827 enoyl-CoA hydratase; 98.2 1.8E-05 3.9E-10 74.4 12.8 135 104-260 30-188 (260)
105 PRK05724 acetyl-CoA carboxylas 98.2 2.8E-05 6E-10 75.9 13.8 130 101-261 129-268 (319)
106 PLN03230 acetyl-coenzyme A car 98.2 2.3E-05 5.1E-10 78.6 13.1 129 102-261 200-338 (431)
107 TIGR00513 accA acetyl-CoA carb 98.2 4.1E-05 9E-10 74.6 14.1 130 101-261 129-268 (316)
108 PRK12319 acetyl-CoA carboxylas 98.2 4.3E-05 9.3E-10 72.5 13.9 134 96-260 71-214 (256)
109 PLN02851 3-hydroxyisobutyryl-C 98.2 3.6E-05 7.8E-10 77.5 14.0 146 96-261 53-226 (407)
110 CHL00198 accA acetyl-CoA carbo 98.2 3.6E-05 7.8E-10 75.2 13.5 130 101-261 132-271 (322)
111 PRK08184 benzoyl-CoA-dihydrodi 98.1 2.5E-05 5.3E-10 81.5 13.0 142 103-260 48-216 (550)
112 PLN02157 3-hydroxyisobutyryl-C 98.1 4.3E-05 9.3E-10 76.9 14.2 145 97-261 49-221 (401)
113 PRK05617 3-hydroxyisobutyryl-C 98.1 1.7E-05 3.8E-10 77.9 11.2 133 104-261 27-188 (342)
114 PLN03229 acetyl-coenzyme A car 98.1 5E-05 1.1E-09 80.6 15.0 130 101-261 220-359 (762)
115 COG1024 CaiD Enoyl-CoA hydrata 98.1 3.6E-05 7.9E-10 72.2 12.6 138 103-260 28-186 (257)
116 PLN02988 3-hydroxyisobutyryl-C 98.1 4.8E-05 1E-09 76.0 14.1 138 104-261 33-193 (381)
117 TIGR02440 FadJ fatty oxidation 98.1 4.7E-05 1E-09 81.4 14.5 139 104-261 26-187 (699)
118 PLN02874 3-hydroxyisobutyryl-C 98.1 5E-05 1.1E-09 75.7 13.7 145 97-261 23-193 (379)
119 KOG1680 Enoyl-CoA hydratase [L 98.1 3.1E-05 6.6E-10 73.9 10.7 138 103-262 60-217 (290)
120 TIGR02437 FadB fatty oxidation 98.1 8.9E-05 1.9E-09 79.5 15.5 138 104-260 31-190 (714)
121 PRK11730 fadB multifunctional 98.0 7.2E-05 1.6E-09 80.2 14.1 139 104-261 31-191 (715)
122 TIGR03222 benzo_boxC benzoyl-C 98.0 8E-05 1.7E-09 77.6 13.0 141 104-260 45-212 (546)
123 PRK11154 fadJ multifunctional 98.0 0.00015 3.2E-09 77.8 15.2 139 104-261 31-192 (708)
124 TIGR02441 fa_ox_alpha_mit fatt 97.9 0.00017 3.7E-09 77.6 13.3 136 104-260 38-198 (737)
125 TIGR03134 malonate_gamma malon 97.8 0.00075 1.6E-08 63.5 14.1 131 104-262 45-191 (238)
126 TIGR03222 benzo_boxC benzoyl-C 97.6 0.0012 2.7E-08 68.9 14.1 141 104-261 295-466 (546)
127 PRK08184 benzoyl-CoA-dihydrodi 97.5 0.0009 1.9E-08 70.0 11.9 141 104-261 299-470 (550)
128 TIGR01117 mmdA methylmalonyl-C 97.4 0.0013 2.9E-08 68.2 11.6 139 101-260 328-481 (512)
129 PRK05654 acetyl-CoA carboxylas 97.2 0.0074 1.6E-07 58.5 13.2 91 99-193 132-233 (292)
130 TIGR00515 accD acetyl-CoA carb 97.2 0.0064 1.4E-07 58.7 12.4 125 99-261 131-266 (285)
131 TIGR03133 malonate_beta malona 96.9 0.008 1.7E-07 57.7 10.3 93 99-193 70-176 (274)
132 PF01039 Carboxyl_trans: Carbo 96.7 0.0042 9.1E-08 64.1 7.7 91 102-194 308-410 (493)
133 PRK07189 malonate decarboxylas 96.7 0.0098 2.1E-07 57.9 9.7 93 99-193 79-185 (301)
134 COG0825 AccA Acetyl-CoA carbox 96.5 0.0077 1.7E-07 58.2 7.1 108 125-261 150-267 (317)
135 PLN02820 3-methylcrotonyl-CoA 96.3 0.043 9.4E-07 57.8 11.8 92 101-194 379-482 (569)
136 KOG1681 Enoyl-CoA isomerase [L 96.2 0.0085 1.8E-07 56.3 5.4 104 140-261 113-216 (292)
137 CHL00174 accD acetyl-CoA carbo 96.1 0.08 1.7E-06 51.5 12.0 124 99-260 144-279 (296)
138 KOG1679 Enoyl-CoA hydratase [L 96.0 0.018 3.9E-07 53.8 6.7 132 107-261 58-213 (291)
139 COG0447 MenB Dihydroxynaphthoi 95.2 0.054 1.2E-06 50.7 6.5 136 104-260 43-204 (282)
140 PLN02820 3-methylcrotonyl-CoA 95.1 0.16 3.4E-06 53.6 10.6 91 99-193 140-244 (569)
141 PF06833 MdcE: Malonate decarb 94.1 0.76 1.6E-05 43.3 11.4 133 101-261 40-188 (234)
142 COG4799 Acetyl-CoA carboxylase 93.7 0.23 4.9E-06 51.8 7.8 91 100-192 336-438 (526)
143 TIGR01117 mmdA methylmalonyl-C 92.9 0.72 1.6E-05 48.1 10.2 92 99-194 93-194 (512)
144 PF01039 Carboxyl_trans: Carbo 92.0 0.33 7E-06 50.2 6.3 92 99-194 68-171 (493)
145 KOG1682 Enoyl-CoA isomerase [L 91.9 0.88 1.9E-05 42.5 8.2 95 144-262 116-214 (287)
146 KOG0016 Enoyl-CoA hydratase/is 91.4 1.9 4E-05 41.3 10.1 97 145-260 99-195 (266)
147 cd06567 Peptidase_S41 C-termin 89.5 2.2 4.7E-05 38.7 8.7 70 105-176 71-167 (224)
148 COG0777 AccD Acetyl-CoA carbox 86.1 6.7 0.00015 38.0 9.8 121 99-261 133-268 (294)
149 cd07560 Peptidase_S41_CPP C-te 85.9 4.8 0.0001 36.9 8.6 71 105-176 59-154 (211)
150 COG0793 Prc Periplasmic protea 82.1 6 0.00013 40.1 8.2 80 96-176 204-310 (406)
151 PF08496 Peptidase_S49_N: Pept 80.9 3 6.5E-05 36.9 4.9 44 97-140 102-146 (155)
152 KOG1684 Enoyl-CoA hydratase [L 80.7 4.8 0.0001 40.4 6.7 100 94-195 47-182 (401)
153 PF03572 Peptidase_S41: Peptid 79.4 11 0.00023 32.1 7.8 69 107-176 15-113 (169)
154 TIGR00225 prc C-terminal pepti 79.3 7.5 0.00016 37.9 7.6 80 96-176 152-257 (334)
155 PRK11186 carboxy-terminal prot 76.5 12 0.00025 40.6 8.6 80 95-175 353-459 (667)
156 PLN00049 carboxyl-terminal pro 76.4 14 0.0003 37.0 8.8 80 95-175 194-301 (389)
157 cd07562 Peptidase_S41_TRI Tric 74.5 18 0.00038 34.1 8.5 80 92-176 84-186 (266)
158 cd07561 Peptidase_S41_CPP_like 73.5 23 0.0005 33.5 9.0 56 94-151 63-121 (256)
159 smart00245 TSPc tail specific 72.2 21 0.00046 31.9 8.1 81 95-176 28-135 (192)
160 cd07563 Peptidase_S41_IRBP Int 70.5 25 0.00055 32.5 8.5 65 109-176 82-180 (250)
161 COG4799 Acetyl-CoA carboxylase 67.0 15 0.00032 38.7 6.5 90 100-193 103-202 (526)
162 PLN00125 Succinyl-CoA ligase [ 47.3 50 0.0011 32.3 6.2 64 97-165 180-245 (300)
163 COG0757 AroQ 3-dehydroquinate 40.7 63 0.0014 28.4 5.1 28 130-158 70-97 (146)
164 cd06533 Glyco_transf_WecG_TagA 40.2 1.7E+02 0.0036 25.8 8.0 83 79-167 25-113 (171)
165 PTZ00187 succinyl-CoA syntheta 39.9 80 0.0017 31.2 6.4 65 97-165 199-264 (317)
166 TIGR00282 metallophosphoestera 39.3 75 0.0016 30.5 6.0 65 96-160 2-66 (266)
167 PF06972 DUF1296: Protein of u 37.1 47 0.001 25.0 3.3 34 217-251 7-41 (60)
168 cd05014 SIS_Kpsf KpsF-like pro 36.9 2.2E+02 0.0048 22.8 7.9 40 125-165 47-86 (128)
169 COG0074 SucD Succinyl-CoA synt 36.2 81 0.0018 30.9 5.6 53 111-165 187-240 (293)
170 TIGR00377 ant_ant_sig anti-ant 36.2 1.5E+02 0.0033 23.0 6.5 73 97-173 15-93 (108)
171 PF03808 Glyco_tran_WecB: Glyc 35.7 2E+02 0.0043 25.3 7.8 80 81-167 29-115 (172)
172 KOG0540 3-Methylcrotonyl-CoA c 34.3 1.2E+02 0.0026 31.7 6.7 87 101-191 362-461 (536)
173 PF13607 Succ_CoA_lig: Succiny 33.5 1.2E+02 0.0027 26.0 5.9 60 96-163 30-91 (138)
174 PF00549 Ligase_CoA: CoA-ligas 33.1 93 0.002 27.4 5.1 57 110-166 59-121 (153)
175 PF04273 DUF442: Putative phos 32.9 1.9E+02 0.0042 23.9 6.7 42 125-166 58-99 (110)
176 TIGR02886 spore_II_AA anti-sig 32.2 2.1E+02 0.0046 22.3 6.8 76 97-176 11-92 (106)
177 cd07041 STAS_RsbR_RsbS_like Su 31.9 2.5E+02 0.0055 22.0 8.0 80 97-176 13-94 (109)
178 COG1512 Beta-propeller domains 31.4 1.1E+02 0.0023 29.7 5.6 56 93-148 32-89 (271)
179 cd07043 STAS_anti-anti-sigma_f 29.1 2.5E+02 0.0054 21.0 7.0 79 96-175 10-90 (99)
180 cd02067 B12-binding B12 bindin 27.7 3.2E+02 0.007 21.9 8.3 80 88-176 18-104 (119)
181 PF01740 STAS: STAS domain; I 26.6 3.2E+02 0.007 21.6 7.5 80 96-175 11-100 (117)
182 COG3904 Predicted periplasmic 26.6 1.5E+02 0.0032 28.0 5.4 56 99-158 52-107 (245)
183 PF00681 Plectin: Plectin repe 25.9 48 0.001 22.9 1.7 19 239-257 18-36 (45)
184 cd07382 MPP_DR1281 Deinococcus 25.7 1.8E+02 0.0039 27.7 6.0 65 96-161 1-66 (255)
185 PRK06091 membrane protein FdrA 24.9 1.6E+02 0.0034 31.5 5.9 52 112-165 240-291 (555)
186 PF02310 B12-binding: B12 bind 24.9 3.5E+02 0.0076 21.4 7.6 69 96-173 30-99 (121)
187 PF14566 PTPlike_phytase: Inos 24.1 2E+02 0.0043 24.8 5.6 52 94-150 90-149 (149)
188 smart00250 PLEC Plectin repeat 23.0 54 0.0012 21.7 1.4 18 240-257 19-36 (38)
189 KOG3093 5-formyltetrahydrofola 21.2 1.6E+02 0.0034 27.3 4.4 45 108-152 30-74 (200)
190 TIGR02364 dha_pts dihydroxyace 21.1 4.3E+02 0.0093 22.3 6.9 60 95-157 28-90 (125)
191 cd01026 TOPRIM_OLD TOPRIM_OLD: 20.8 2.6E+02 0.0056 21.9 5.2 68 92-166 1-68 (97)
192 COG0779 Uncharacterized protei 20.4 2.3E+02 0.0049 25.1 5.2 37 102-138 47-85 (153)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-55 Score=401.54 Aligned_cols=248 Identities=49% Similarity=0.739 Sum_probs=212.9
Q ss_pred cccccCCCcceecccccccccccccccCCCccceecccCcceeeccCCCccccccccCCccccccccCCCCCCCCCCccc
Q 020205 5 LTASSFSKPLFFSNQSLSKTHFLTAANNTNTSTTIKTRRPTCIKAANSSPSIAQTLSTNWDVSNFAVNNNTSSPYLPKFE 84 (329)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 84 (329)
+.+++..+++|-.|+....++- .+. +-.-..+...+.++++-+...++......+|.+|++.......- +..
T Consensus 10 ~s~~~~~~~~~~l~P~~~~~~~-~~~---~~~r~~~~~~~~s~~sg~~~~~~~~~~~~~~~~p~~~~~~~~rG----~~~ 81 (275)
T KOG0840|consen 10 LSSSSSPKRFSGLNPASTSNFP-KQR---NVRRQLKSSTPKSLRSGGSSNSRGWSLRAPILVPRFPIESPGRG----RER 81 (275)
T ss_pred cCcccccchhcccCchhhhhcc-ccc---cchhhhhccCcccccccCCCCCCcccccccccCCcceeeccccC----CCC
Confidence 5666666777777765544443 222 22222233344456555555555666777888886543333222 457
Q ss_pred cCChhhhhhcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEcccc
Q 020205 85 ELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLA 164 (329)
Q Consensus 85 ~~di~~~ll~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~A 164 (329)
++|++++||++|||||+++||+.+++.|++||++|+.+++.|+|+||||||||+|++|++|||.|+.++.||.|+|.|+|
T Consensus 82 ~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~Tic~G~A 161 (275)
T KOG0840|consen 82 PYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVSTICVGLA 161 (275)
T ss_pred cccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCceeeehhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceec
Q 020205 165 ASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMD 244 (329)
Q Consensus 165 ASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lt 244 (329)
||+|++|++||.||+|+++||+++|||||.+++.|++.|+.++++|+++.++.+.++|+++||++.|+|.++|+||+||+
T Consensus 162 as~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fms 241 (275)
T KOG0840|consen 162 ASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMS 241 (275)
T ss_pred HhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeecCC
Q 020205 245 AWEAKEYGLVDAVIDD 260 (329)
Q Consensus 245 a~EAve~GLID~I~~~ 260 (329)
|+||+||||||+|++.
T Consensus 242 a~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 242 AEEAKEYGLIDKVIDH 257 (275)
T ss_pred HHHHHHhcchhhhhcC
Confidence 9999999999999985
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=5.4e-51 Score=368.36 Aligned_cols=176 Identities=57% Similarity=0.929 Sum_probs=173.7
Q ss_pred CChhhhhhcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccc
Q 020205 86 LDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAA 165 (329)
Q Consensus 86 ~di~~~ll~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AA 165 (329)
+|+|++|+++|+||++|+|++..+..+++||++|+.+++.++|.||||||||+|++|++|||+|+.++.||+|+|.|.||
T Consensus 18 ~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~ik~~V~ti~~G~Aa 97 (200)
T COG0740 18 YDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPPVSTICMGQAA 97 (200)
T ss_pred hhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhcCCCeEEEEecHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecH
Q 020205 166 SMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDA 245 (329)
Q Consensus 166 Saas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta 245 (329)
|||++|++||++|+|+++|||++|||||+++..|+++|++++++++.+.+..+.++|+++||++.+++++++++|+||+|
T Consensus 98 Smgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa 177 (200)
T COG0740 98 SMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSA 177 (200)
T ss_pred hHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeecCCC
Q 020205 246 WEAKEYGLVDAVIDDG 261 (329)
Q Consensus 246 ~EAve~GLID~I~~~~ 261 (329)
+||++|||||+|++..
T Consensus 178 ~eA~~yGLiD~V~~~~ 193 (200)
T COG0740 178 EEAKEYGLIDKVIESR 193 (200)
T ss_pred HHHHHcCCcceecccc
Confidence 9999999999999865
No 3
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=7.3e-49 Score=356.80 Aligned_cols=177 Identities=44% Similarity=0.758 Sum_probs=172.9
Q ss_pred cCChhhhhhcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEcccc
Q 020205 85 ELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLA 164 (329)
Q Consensus 85 ~~di~~~ll~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~A 164 (329)
+.|++++|+++|||||+++|++++++.|+++|++|+.+++.++|+|+||||||+|++|++|||+|+.++.+|+|+|.|+|
T Consensus 17 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G~A 96 (201)
T PRK14513 17 MYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGIA 96 (201)
T ss_pred ccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEeee
Confidence 57999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceec
Q 020205 165 ASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMD 244 (329)
Q Consensus 165 ASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lt 244 (329)
||+|++|++||++|+|++.|||++|||||+++..|++.|++.+++++...++.+.++|+++||++.++|.++|++++|||
T Consensus 97 aS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~ms 176 (201)
T PRK14513 97 MSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMS 176 (201)
T ss_pred hhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeecCCC
Q 020205 245 AWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 245 a~EAve~GLID~I~~~~ 261 (329)
|+||++|||||+|++..
T Consensus 177 a~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 177 PEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HHHHHHcCCCcEEeccC
Confidence 99999999999999854
No 4
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=8.6e-49 Score=360.70 Aligned_cols=177 Identities=52% Similarity=0.860 Sum_probs=172.9
Q ss_pred ccCChhhhhhcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccc
Q 020205 84 EELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 84 ~~~di~~~ll~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~ 163 (329)
.++|++++||++|||||+++||+.+++.++++|++|+.+++.++|+||||||||+|++|++|||+|+.++.||+|+|.|+
T Consensus 43 ~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~G~ 122 (221)
T PRK14514 43 TQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTGM 122 (221)
T ss_pred cccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEEEE
Confidence 35899999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcee
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFM 243 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~l 243 (329)
|||+|++|+++|++|+|++.|||++|+|||+++..|+++|++++++++.+.++.+.++|+++||++.++|++++++|+||
T Consensus 123 AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wm 202 (221)
T PRK14514 123 AASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWM 202 (221)
T ss_pred ehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCceeecCC
Q 020205 244 DAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 244 ta~EAve~GLID~I~~~ 260 (329)
||+||++|||||+|++.
T Consensus 203 tA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 203 TAQEAKEYGMIDEVLIK 219 (221)
T ss_pred CHHHHHHcCCccEEeec
Confidence 99999999999999874
No 5
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=2.7e-48 Score=353.10 Aligned_cols=181 Identities=46% Similarity=0.752 Sum_probs=175.1
Q ss_pred CccccCChhhhhhcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEE
Q 020205 81 PKFEELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTIC 160 (329)
Q Consensus 81 p~~~~~di~~~ll~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v 160 (329)
....|+|++++||++|||||+++||+.+++.++++|++|+.+++.++|+|+||||||+|++|++|||+|+.++.||+|+|
T Consensus 16 ~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~Tv~ 95 (200)
T CHL00028 16 EDATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFVKPDVHTIC 95 (200)
T ss_pred CCcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEE
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHhcCCCCcEEEecCceEEEeccCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcC
Q 020205 161 LGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGT-AGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDR 239 (329)
Q Consensus 161 ~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~-~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~ 239 (329)
.|+|||+|++|+++|++|+|++.|||++|+|||+++ ..|+++|+..+++++...++.+.++|+++||++.++|++++++
T Consensus 96 ~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r 175 (200)
T CHL00028 96 LGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMER 175 (200)
T ss_pred EEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999999999999999999999988 8999999999999999999999999999999999999999999
Q ss_pred CceecHHHHHHcCCceeecCCC
Q 020205 240 DNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 240 d~~lta~EAve~GLID~I~~~~ 261 (329)
++||||+||++|||||+|+++.
T Consensus 176 ~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 176 DVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred CccCCHHHHHHcCCCcEEeecC
Confidence 9999999999999999999754
No 6
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=1.8e-48 Score=358.29 Aligned_cols=178 Identities=41% Similarity=0.681 Sum_probs=172.2
Q ss_pred ccCChhhhhhcCcEEEEccccChh----------HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCc---------hhHHHH
Q 020205 84 EELDTTNMLLRQRIIFLGSQVDDL----------TADFIISQLLFLDAEDSKKDIRLFINSPGGS---------VTAGMG 144 (329)
Q Consensus 84 ~~~di~~~ll~~rII~l~g~Id~~----------~a~~ii~~L~~l~~~~~~k~I~L~INSPGGs---------V~ag~a 144 (329)
.+.|++++||++|||||+++|++. +++.|+++|++|+.+++.++|+||||||||+ |++|++
T Consensus 19 ~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~gla 98 (222)
T PRK12552 19 PPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFA 98 (222)
T ss_pred CCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHH
Confidence 347999999999999999999999 9999999999999999999999999999988 778899
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 020205 145 IYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSR 224 (329)
Q Consensus 145 Iyd~Ir~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~ 224 (329)
|||+|+.++.+|+|+|.|+|||+|++|++||++|+|+++|||++|||||+++..|++.|++.+++++.+.++.+.++|++
T Consensus 99 IyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~ 178 (222)
T PRK12552 99 ICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSR 178 (222)
T ss_pred HHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 225 ATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 225 ~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
+||++.++|.+++++++||||+||++|||||+|++..
T Consensus 179 ~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 179 NTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred HHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 9999999999999999999999999999999999753
No 7
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=3.5e-48 Score=351.26 Aligned_cols=178 Identities=56% Similarity=0.895 Sum_probs=173.2
Q ss_pred ccCChhhhhhcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccc
Q 020205 84 EELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 84 ~~~di~~~ll~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~ 163 (329)
.++|++++|+++||||++++||+.+++.++++|++++.+++.++|+||||||||+|++|++|||+|+.++.||+|+|.|+
T Consensus 14 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G~ 93 (196)
T PRK12551 14 RAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGL 93 (196)
T ss_pred cccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEE
Confidence 34799999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcee
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFM 243 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~l 243 (329)
|||+|++|+++|++++|++.|||++|||||+++..|+++|++.+++++.+.++.+.++|+++||++.++|.+++++++||
T Consensus 94 AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~m 173 (196)
T PRK12551 94 AASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFM 173 (196)
T ss_pred ehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCceeecCCC
Q 020205 244 DAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 244 ta~EAve~GLID~I~~~~ 261 (329)
||+||++|||||+|++..
T Consensus 174 sa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 174 SPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CHHHHHHcCCCcEEeccC
Confidence 999999999999999863
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=7.5e-45 Score=328.20 Aligned_cols=176 Identities=59% Similarity=0.943 Sum_probs=170.9
Q ss_pred ccCChhhhhhcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccc
Q 020205 84 EELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 84 ~~~di~~~ll~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~ 163 (329)
.++|++++|+++|+||++|+|++.+++.++.+|++++.+++.++|+|+||||||+|++|++|||+|+.++.+|+|+|.|+
T Consensus 15 ~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G~ 94 (191)
T TIGR00493 15 RSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGQ 94 (191)
T ss_pred ccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 45899999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcee
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFM 243 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~l 243 (329)
|||+|++|+++|++++|++.|+|++|+|||+++..|++.|++.+++++..+++.+.++|+++||++.++++++|++++||
T Consensus 95 AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~l 174 (191)
T TIGR00493 95 AASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFM 174 (191)
T ss_pred eccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccC
Confidence 99999999999999899999999999999998899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCceeecC
Q 020205 244 DAWEAKEYGLVDAVID 259 (329)
Q Consensus 244 ta~EAve~GLID~I~~ 259 (329)
|++||++|||||+|+.
T Consensus 175 ta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 175 SAEEAKEYGLIDSVLT 190 (191)
T ss_pred cHHHHHHcCCccEEec
Confidence 9999999999999975
No 9
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=327.73 Aligned_cols=180 Identities=35% Similarity=0.591 Sum_probs=171.9
Q ss_pred ccccCChhhhhhcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEc
Q 020205 82 KFEELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 82 ~~~~~di~~~ll~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~ 161 (329)
+...-+++++|+++|+|||+|+|++.++..|+++|++++..++.++|+|+||||||+|++|++|||+|+.++.||+|+|.
T Consensus 10 ~~~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~ 89 (197)
T PRK14512 10 QTGIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGV 89 (197)
T ss_pred cCCcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 34445888999999999999999999999999999999887788999999999999999999999999999999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|||+|++|+++|++++|+++|||++|+|||+++..|++.|++.+++++.+.++.+.++|+++||++.+++++++++++
T Consensus 90 G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~ 169 (197)
T PRK14512 90 GLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDF 169 (197)
T ss_pred eeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCc
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
|||++||++|||||+|+++.
T Consensus 170 ~lta~EA~~yGliD~I~~~~ 189 (197)
T PRK14512 170 WLDSSSAVKYGLVFEVVETR 189 (197)
T ss_pred ccCHHHHHHcCCccEeecCc
Confidence 99999999999999999753
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=2.9e-43 Score=319.85 Aligned_cols=180 Identities=61% Similarity=0.960 Sum_probs=173.4
Q ss_pred ccccCChhhhhhcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEc
Q 020205 82 KFEELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 82 ~~~~~di~~~ll~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~ 161 (329)
...++|+++.|+++|+|||+|+|++.+++.++++|++++.+++.++|+|+||||||+|++|++|||+|+.++.||+|+|.
T Consensus 18 ~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~~~~v~t~~~ 97 (200)
T PRK00277 18 GERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPDVSTICI 97 (200)
T ss_pred CcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEEE
Confidence 33568999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|+|+|++|+++|++++|++.|++++|+|+|+++.+|++.|++.+++++.++++.+.++|+++||++.+++++++++++
T Consensus 98 G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~ 177 (200)
T PRK00277 98 GQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDN 177 (200)
T ss_pred eEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
||+++||++|||||+|+++.
T Consensus 178 ~lsa~EA~e~GliD~Ii~~~ 197 (200)
T PRK00277 178 FMSAEEAKEYGLIDEVLTKR 197 (200)
T ss_pred cccHHHHHHcCCccEEeecC
Confidence 99999999999999999864
No 11
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=2.6e-43 Score=313.51 Aligned_cols=177 Identities=45% Similarity=0.741 Sum_probs=167.9
Q ss_pred ccCChhhhhhcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccc
Q 020205 84 EELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 84 ~~~di~~~ll~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~ 163 (329)
.|+|++++|+++|+|||+|+||+.++..++++|.+++.+++.++|+|+||||||+|++|++||++|+.++.||+|+|.|.
T Consensus 5 ~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G~ 84 (182)
T PF00574_consen 5 EWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLGL 84 (182)
T ss_dssp EEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEEE
T ss_pred EEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeCc
Confidence 48999999999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcee
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFM 243 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~l 243 (329)
|+|+|++|+++|++++|++.|+|.+|+|+|+.+..|+..++..+++++.+.++.+.++|+++||++++++.++|++++||
T Consensus 85 aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l 164 (182)
T PF00574_consen 85 AASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWL 164 (182)
T ss_dssp EETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEE
T ss_pred cccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCccc
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCceeecCC
Q 020205 244 DAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 244 ta~EAve~GLID~I~~~ 260 (329)
+|+||++|||||+|+++
T Consensus 165 ~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 165 SAEEALEYGIIDEIIES 181 (182)
T ss_dssp EHHHHHHHTSSSEEESS
T ss_pred cHHHHHHcCCCCEeccC
Confidence 99999999999999875
No 12
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=2.3e-42 Score=315.51 Aligned_cols=178 Identities=52% Similarity=0.849 Sum_probs=171.2
Q ss_pred ccCChhhhhhcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccc
Q 020205 84 EELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 84 ~~~di~~~ll~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~ 163 (329)
.+.|+++.|+++|+|||+|+|++.+++.|+++|++++.+++.++|+|+||||||+|++|++||++|+.++.||+|+|.|.
T Consensus 24 ~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~ 103 (207)
T PRK12553 24 KESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQ 103 (207)
T ss_pred ccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 44799999999999999999999999999999999998887899999999999999999999999999999999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccC--CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPL--GTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~--~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|+|+|++|+++|++++|++.|+|++|+|+|+ ++..|++.|++.+++++.++++.+.++|+++||++.+++++++++++
T Consensus 104 aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~ 183 (207)
T PRK12553 104 AASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDK 183 (207)
T ss_pred hhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCc
Confidence 9999999999999989999999999999998 56799999999999999999999999999999999999999999999
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
|||++||++|||||+|+++.
T Consensus 184 ~lta~EA~e~GliD~I~~~~ 203 (207)
T PRK12553 184 WLTAEEAKDYGLVDQIITSY 203 (207)
T ss_pred cccHHHHHHcCCccEEcCch
Confidence 99999999999999999864
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=2.7e-42 Score=305.70 Aligned_cols=171 Identities=61% Similarity=1.011 Sum_probs=166.5
Q ss_pred ChhhhhhcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccch
Q 020205 87 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAAS 166 (329)
Q Consensus 87 di~~~ll~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AAS 166 (329)
|++++|+++|+||++|+|++.++..++++|++++.+++.++|+|+||||||+|++|++||+.|+.++.+|+|+|.|+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 68999999999999999999999999999999998877899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHH
Q 020205 167 MGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAW 246 (329)
Q Consensus 167 aas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~ 246 (329)
+|++|+++|++|+|++.|++++|+|+|+.+..|+..|+..+++++.+.++.+.++|+++||++.+++.++|++++||+++
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~ 160 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAE 160 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceee
Q 020205 247 EAKEYGLVDAV 257 (329)
Q Consensus 247 EAve~GLID~I 257 (329)
||+++||||+|
T Consensus 161 EA~e~GiiD~V 171 (171)
T cd07017 161 EAKEYGLIDKI 171 (171)
T ss_pred HHHHcCCCccC
Confidence 99999999986
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=3.9e-41 Score=296.37 Aligned_cols=162 Identities=48% Similarity=0.726 Sum_probs=158.2
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHhcC
Q 020205 96 RIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAG 175 (329)
Q Consensus 96 rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AASaas~Ia~AG 175 (329)
|+|||.|+|++.+++.|+++|.+++.+++.++|+|+||||||+|+++++||++|+.++.||+|+|.|+|+|+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 79999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCCce
Q 020205 176 SKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVD 255 (329)
Q Consensus 176 dkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GLID 255 (329)
++|+|+++|++++|+|+|+++..|+..|++..++++...++.|.++|+++||++.++|+++|++++||+++||++|||||
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD 160 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD 160 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 020205 256 AV 257 (329)
Q Consensus 256 ~I 257 (329)
+|
T Consensus 161 ~i 162 (162)
T cd07013 161 TI 162 (162)
T ss_pred cC
Confidence 86
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=9.8e-32 Score=234.53 Aligned_cols=156 Identities=32% Similarity=0.437 Sum_probs=148.0
Q ss_pred EEEEccccCh---hHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHh
Q 020205 97 IIFLGSQVDD---LTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLA 173 (329)
Q Consensus 97 II~l~g~Id~---~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AASaas~Ia~ 173 (329)
-|++.|+|+. .+++.+.+.|.++..+ ++|+|+||||||++.++++|++.|+.+++||++++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 5889999999 7999999999987643 899999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCC
Q 020205 174 AGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGL 253 (329)
Q Consensus 174 AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GL 253 (329)
+|| .|++.|++.||+|+|..+..|+..++....+++.+.++.+.+.|++++|++.+++.+++.+++||+++||+++||
T Consensus 79 a~d--~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~Gl 156 (160)
T cd07016 79 AGD--EVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGF 156 (160)
T ss_pred cCC--eEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCC
Confidence 999 699999999999999988889999999888999999999999999999999999999999999999999999999
Q ss_pred ceee
Q 020205 254 VDAV 257 (329)
Q Consensus 254 ID~I 257 (329)
||+|
T Consensus 157 iD~v 160 (160)
T cd07016 157 ADEI 160 (160)
T ss_pred CCcC
Confidence 9986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.97 E-value=2.9e-30 Score=229.89 Aligned_cols=156 Identities=20% Similarity=0.246 Sum_probs=137.2
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEc---cccchHHHHHHh
Q 020205 97 IIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICL---GLAASMGAFLLA 173 (329)
Q Consensus 97 II~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~---G~AASaas~Ia~ 173 (329)
+|.+.|.|++.+..++.+.|..+.. ++.+.|+|+||||||.++++++||+.|+.++.||+++|. |.|+|+|++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~~-~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHhc-CCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 5678999999999999999887664 568999999999999999999999999999999999999 999999999999
Q ss_pred cCCCCcEEEecCceEEEeccCCCCCCC-----hhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHH
Q 020205 174 AGSKGKRYCMPNARVMIHQPLGTAGGK-----ATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEA 248 (329)
Q Consensus 174 AGdkg~R~a~PnS~imIHqp~~~~~G~-----~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EA 248 (329)
+|+ +|+|.|++++|.|+|..+ .|+ ..+.+....++.+++ -+++++|++.+.+++++++++|||++||
T Consensus 82 a~~--~i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r-----~~A~~~Gr~~~~a~~~v~~~~~lta~EA 153 (172)
T cd07015 82 GSH--LIAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIK-----SLAQESGRNATIAEEFITKDLSLTPEEA 153 (172)
T ss_pred hcC--ceEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHH-----HHHHHHCcCHHHHHHHHHhhcCcCHHHH
Confidence 999 599999999999999864 355 445554444444433 3999999999999999999999999999
Q ss_pred HHcCCceeecCCC
Q 020205 249 KEYGLVDAVIDDG 261 (329)
Q Consensus 249 ve~GLID~I~~~~ 261 (329)
++||+||.|..+.
T Consensus 154 ~~~G~iD~ia~~~ 166 (172)
T cd07015 154 LKYGVIEVVARDI 166 (172)
T ss_pred HHcCCceeeeCCH
Confidence 9999999998863
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.97 E-value=1.6e-29 Score=219.91 Aligned_cols=159 Identities=35% Similarity=0.568 Sum_probs=146.8
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHhcCC
Q 020205 97 IIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGS 176 (329)
Q Consensus 97 II~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AASaas~Ia~AGd 176 (329)
||+++|+|++.+.+.+++.|..++.++..+.|+|++|||||++.++.+|+++|+.+++||++++.|.|+|+|++|+++||
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCceEEEeccCCCCCCCh--hhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCCc
Q 020205 177 KGKRYCMPNARVMIHQPLGTAGGKA--TDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLV 254 (329)
Q Consensus 177 kg~R~a~PnS~imIHqp~~~~~G~~--~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GLI 254 (329)
+|++.|++.+|+|+++.+..+.. .+.+...+.+....+.+.+.++++||++.+++.+++.++.||+++||+++|||
T Consensus 81 --~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLv 158 (161)
T cd00394 81 --KIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLV 158 (161)
T ss_pred --EEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCc
Confidence 69999999999999987766654 55555556677778899999999999999999999999999999999999999
Q ss_pred eee
Q 020205 255 DAV 257 (329)
Q Consensus 255 D~I 257 (329)
|+|
T Consensus 159 D~i 161 (161)
T cd00394 159 DAL 161 (161)
T ss_pred CcC
Confidence 986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.95 E-value=1.5e-26 Score=207.71 Aligned_cols=161 Identities=18% Similarity=0.264 Sum_probs=137.2
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEc---cccchHHHHHHh
Q 020205 97 IIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICL---GLAASMGAFLLA 173 (329)
Q Consensus 97 II~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~---G~AASaas~Ia~ 173 (329)
+|.|+|.|++..+..+.++|..+..+ +.+.|+|+||||||+++++.+||+.|+.+++||+++|. |.|+|+|++|++
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence 57889999999999999999988754 47999999999999999999999999999999999998 999999999999
Q ss_pred cCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCC
Q 020205 174 AGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGL 253 (329)
Q Consensus 174 AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GL 253 (329)
+|| .|++.|+++|++|.+..+..+...+...+.+.+.... .+...|++++|++.+.+++++..++||+++||+++||
T Consensus 82 a~D--~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Gl 158 (187)
T cd07020 82 AAH--IAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAV-AYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGV 158 (187)
T ss_pred hCC--ceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCC
Confidence 999 5899999999999998543333223333333333333 3567889999999999999998899999999999999
Q ss_pred ceeecCCC
Q 020205 254 VDAVIDDG 261 (329)
Q Consensus 254 ID~I~~~~ 261 (329)
||+|+++.
T Consensus 159 vd~v~~~~ 166 (187)
T cd07020 159 IDLIAADL 166 (187)
T ss_pred cccccCCH
Confidence 99998763
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.94 E-value=1e-25 Score=201.64 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=135.8
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHhcCC
Q 020205 97 IIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGS 176 (329)
Q Consensus 97 II~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AASaas~Ia~AGd 176 (329)
+|.+.|+|++.++.++.+.|..+..+ +.+.|+|+||||||.++++..|++.|+.++.||+++|.|.|+|+|++|+++||
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 57789999999999999999877754 48999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCC-------------cee
Q 020205 177 KGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRD-------------NFM 243 (329)
Q Consensus 177 kg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d-------------~~l 243 (329)
.++|.|++.+|.|.|+....+...+ +.+......+.+.|++++|++.+.++++++++ .||
T Consensus 82 --~i~m~p~a~iG~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~l 154 (178)
T cd07021 82 --EIYMAPGATIGAAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTL 154 (178)
T ss_pred --eEEECCCCeEecCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeee
Confidence 6999999999999998765543222 12333333455669999999999999999988 599
Q ss_pred cHHHHHHcCCceeecCCC
Q 020205 244 DAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 244 ta~EAve~GLID~I~~~~ 261 (329)
|++||+++|++|.|..+.
T Consensus 155 ta~eA~~~g~~d~ia~~~ 172 (178)
T cd07021 155 TADEALKVGYAEGIAGSL 172 (178)
T ss_pred CHHHHHHhCCeEEEECCH
Confidence 999999999999998753
No 20
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.85 E-value=4.7e-20 Score=168.05 Aligned_cols=160 Identities=20% Similarity=0.260 Sum_probs=128.9
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcC--CCeEEEEccccchHHHHHHhc
Q 020205 97 IIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCK--ADVSTICLGLAASMGAFLLAA 174 (329)
Q Consensus 97 II~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~--~pV~t~v~G~AASaas~Ia~A 174 (329)
+|.+.|+|+ .+.+.+.+.|..+..++..+.|+|++|||||++..+.+|++.|+.++ +||++++.|.|+|+|++|+++
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a 82 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA 82 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence 578899998 56678888999888777889999999999999999999999999998 999999999999999999999
Q ss_pred CCCCcEEEecCceEEEeccCCC------------------CCCChh-------hHHHHH-----HHHHHHHHHHHHHHHH
Q 020205 175 GSKGKRYCMPNARVMIHQPLGT------------------AGGKAT-------DMSIRI-----REMSYHKVKLNKILSR 224 (329)
Q Consensus 175 Gdkg~R~a~PnS~imIHqp~~~------------------~~G~~~-------dl~~~a-----~el~~~~~~i~~iya~ 224 (329)
|| +|++.|++.++...+... ..|++. ++..+. +.+....+.|.+.+++
T Consensus 83 aD--~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~ 160 (207)
T TIGR00706 83 AD--EIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAK 160 (207)
T ss_pred CC--EEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99 699999987654332210 122221 122111 2334556778889999
Q ss_pred HcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCC
Q 020205 225 ATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 225 ~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~ 260 (329)
.+|++.++++++++.. .|+++||+++||||+|...
T Consensus 161 ~R~~~~~~~~~~~~~~-~~~~~~A~~~gLvD~i~~~ 195 (207)
T TIGR00706 161 GRNLPVEDVKKFADGR-VFTGRQALKLRLVDKLGTE 195 (207)
T ss_pred cCCCCHHHHHHHhcCC-cccHHHHHHcCCCcccCCH
Confidence 9999999999988865 4689999999999999874
No 21
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.85 E-value=1.8e-20 Score=181.47 Aligned_cols=162 Identities=25% Similarity=0.221 Sum_probs=126.3
Q ss_pred EEEEccccChhH-------HHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCC--CeEEEEccccchH
Q 020205 97 IIFLGSQVDDLT-------ADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKA--DVSTICLGLAASM 167 (329)
Q Consensus 97 II~l~g~Id~~~-------a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~--pV~t~v~G~AASa 167 (329)
+|++.|.|.... .+.+.+.|..+..+++.++|.|+||||||+|.++..||++|++++. ||+++|.++|||+
T Consensus 63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecch
Confidence 446677776544 6677778888888888999999999999999999999999999975 7999999999999
Q ss_pred HHHHHhcCCCCcEEEecCceEEEeccCCC------------------CCCChhhH-----------H-HHHHHHHHHHHH
Q 020205 168 GAFLLAAGSKGKRYCMPNARVMIHQPLGT------------------AGGKATDM-----------S-IRIREMSYHKVK 217 (329)
Q Consensus 168 as~Ia~AGdkg~R~a~PnS~imIHqp~~~------------------~~G~~~dl-----------~-~~a~el~~~~~~ 217 (329)
||||+|+|| +++|.|+|.++--.+..+ ..|...++ . ....++....+.
T Consensus 143 GY~IA~aAd--~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~ 220 (317)
T COG0616 143 GYYIALAAD--KIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDE 220 (317)
T ss_pred hhhhhccCC--EEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHH
Confidence 999999999 699999998653322211 12222222 1 111244455678
Q ss_pred HHHHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 218 LNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 218 i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
|.+.+++.++++.+++....+ ++.+++++|++.||||++++.+
T Consensus 221 F~~~V~~~R~~~~~~~~~~a~-g~v~~g~~A~~~gLVDelg~~~ 263 (317)
T COG0616 221 FVDKVAEGRGLSDEAVDKLAT-GRVWTGQQALELGLVDELGGLD 263 (317)
T ss_pred HHHHHHhcCCCChhHHHHHhc-cceecHHHhhhcCCchhcCCHH
Confidence 999999999999988777666 5666899999999999999753
No 22
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.83 E-value=1.2e-19 Score=161.15 Aligned_cols=144 Identities=22% Similarity=0.151 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHH---hcCCCeEEEEccccchHHHHHHhcCCCCcEEEec
Q 020205 108 TADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMK---LCKADVSTICLGLAASMGAFLLAAGSKGKRYCMP 184 (329)
Q Consensus 108 ~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir---~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~P 184 (329)
+...+.+.|..+..++..+.|+|.+|||||++.....|+++++ .+++||++++.|.|+|+|++|+++|| .|++.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D--~i~a~~ 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPAN--YIVANP 100 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCC--EEEECC
Confidence 4567888998888877889999999999999998888877665 45799999999999999999999999 699999
Q ss_pred CceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCC
Q 020205 185 NARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 185 nS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~ 260 (329)
++.|++|..+.+ .. .....+....+.|.+.+++.+|++.+++.+++..+.||+++||+++||||+|+..
T Consensus 101 ~a~~~~~G~~~~----~~---~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~ 169 (177)
T cd07014 101 STLVGSIGIFGV----QL---ADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSF 169 (177)
T ss_pred CCeEEEechHhh----HH---HHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCH
Confidence 999999977644 11 1112445566778899999999999999999988899999999999999999874
No 23
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.83 E-value=1.5e-19 Score=164.33 Aligned_cols=161 Identities=25% Similarity=0.266 Sum_probs=128.6
Q ss_pred EEEEccccC---hhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhc---CCCeEEEEccccchHHHH
Q 020205 97 IIFLGSQVD---DLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLC---KADVSTICLGLAASMGAF 170 (329)
Q Consensus 97 II~l~g~Id---~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~---~~pV~t~v~G~AASaas~ 170 (329)
+|.+.|+|+ +.+...+.++|..+..++..+.|+|.+|||||++..+.+|+++|+.. ++||++++.|.|+|+|++
T Consensus 4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~ 83 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYY 83 (208)
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHH
Confidence 678999999 78899999999999888889999999999999999999999988655 579999999999999999
Q ss_pred HHhcCCCCcEEEecCceEEEeccC------------------CCCCCCh-------hhH-----HHHHHHHHHHHHHHHH
Q 020205 171 LLAAGSKGKRYCMPNARVMIHQPL------------------GTAGGKA-------TDM-----SIRIREMSYHKVKLNK 220 (329)
Q Consensus 171 Ia~AGdkg~R~a~PnS~imIHqp~------------------~~~~G~~-------~dl-----~~~a~el~~~~~~i~~ 220 (329)
|+++|| .|++.|++.++..... ....|+. ..+ +.....+....+.|.+
T Consensus 84 lA~aaD--~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~ 161 (208)
T cd07023 84 IAAAAD--KIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVD 161 (208)
T ss_pred HHhhCC--EEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999 6999999887432211 0112221 111 1112234445667888
Q ss_pred HHHHHcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCC
Q 020205 221 ILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 221 iya~~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~ 260 (329)
.+++.+|++.+++.++.+.+. |++++|+++||||+|...
T Consensus 162 ~Va~~R~~~~~~~~~~~~~~~-~~a~~A~~~gLiD~i~~~ 200 (208)
T cd07023 162 VVAEGRGMSGERLDKLADGRV-WTGRQALELGLVDELGGL 200 (208)
T ss_pred HHHhcCCCCHHHHHHhcCCcE-EEHHHHHHcCCCcccCCH
Confidence 899999999999999888655 579999999999999864
No 24
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.82 E-value=2.7e-19 Score=185.68 Aligned_cols=161 Identities=23% Similarity=0.213 Sum_probs=127.1
Q ss_pred EEEEccccChh-------HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhc---CCCeEEEEccccch
Q 020205 97 IIFLGSQVDDL-------TADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLC---KADVSTICLGLAAS 166 (329)
Q Consensus 97 II~l~g~Id~~-------~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~---~~pV~t~v~G~AAS 166 (329)
+|++.|+|.+. ..+.+.+.|..+..++..+.|+|+||||||+++++..|+++|+.. ++||++++.|+|||
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 77889999752 256778888888877788999999999999999999999998754 48999999999999
Q ss_pred HHHHHHhcCCCCcEEEecCceE------EEeccC-------C-----CCCCC-----------hhhHHHHHHHHHHHHHH
Q 020205 167 MGAFLLAAGSKGKRYCMPNARV------MIHQPL-------G-----TAGGK-----------ATDMSIRIREMSYHKVK 217 (329)
Q Consensus 167 aas~Ia~AGdkg~R~a~PnS~i------mIHqp~-------~-----~~~G~-----------~~dl~~~a~el~~~~~~ 217 (329)
+||||+++|| ++++.|++.+ +.+... + ...|. .++.+.....+....+.
T Consensus 392 ggY~iA~aaD--~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~ 469 (584)
T TIGR00705 392 GGYWIASAAD--YIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR 469 (584)
T ss_pred HHHHHHHhCC--EEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 6999999876 333110 0 01121 12223333455566778
Q ss_pred HHHHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCC
Q 020205 218 LNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 218 i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~ 260 (329)
|.+.+++.+|++.++++.+++.. .++++||+++||||+|..-
T Consensus 470 F~~~Va~~R~l~~e~v~~ia~Gr-v~tg~eA~~~GLVD~ig~~ 511 (584)
T TIGR00705 470 FLSVVSAGRNLTPTQVDKVAQGR-VWTGEDAVSNGLVDALGGL 511 (584)
T ss_pred HHHHHHhhCCCCHHHHHHHHhCC-CcCHHHHHHcCCcccCCCH
Confidence 88999999999999999988865 5599999999999999763
No 25
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.81 E-value=1.2e-18 Score=159.44 Aligned_cols=150 Identities=22% Similarity=0.232 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcC--CCeEEEEccccchHHHHHHhcCCCCcEEEec
Q 020205 107 LTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCK--ADVSTICLGLAASMGAFLLAAGSKGKRYCMP 184 (329)
Q Consensus 107 ~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~--~pV~t~v~G~AASaas~Ia~AGdkg~R~a~P 184 (329)
.+...+.++|..+..++..+.|+|.+|||||++.....|+++|+.++ +||++++.|.|+|+|++|+++|| ++++.|
T Consensus 25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD--~i~a~~ 102 (214)
T cd07022 25 TSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAAD--RIVVTP 102 (214)
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCC--EEEEcC
Confidence 45678999999988888899999999999999999999999999988 99999999999999999999999 699999
Q ss_pred CceEEEeccCCC------------------CCCCh-------hhHHHHH-----HHHHHHHHHHHHHHHHHcCCCHHHHH
Q 020205 185 NARVMIHQPLGT------------------AGGKA-------TDMSIRI-----REMSYHKVKLNKILSRATGKPVQQIE 234 (329)
Q Consensus 185 nS~imIHqp~~~------------------~~G~~-------~dl~~~a-----~el~~~~~~i~~iya~~tG~s~e~I~ 234 (329)
++.++....... ..|+. .++.... ..+....+.|.+.+++.+|++.+++.
T Consensus 103 ~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~ 182 (214)
T cd07022 103 TAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVR 182 (214)
T ss_pred CCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 998654322110 12322 1222211 22334566788899999999999998
Q ss_pred hhhcCCceecHHHHHHcCCceeecCC
Q 020205 235 LDTDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 235 ~l~d~d~~lta~EAve~GLID~I~~~ 260 (329)
+++ ...|+++||+++||||+|+..
T Consensus 183 ~~~--~~~~~~~~Al~~gLvD~i~~~ 206 (214)
T cd07022 183 ATE--GGVFRGQEAVAAGLADAVGTL 206 (214)
T ss_pred Hhh--cCeeeHHHHHHcCCCcccCCH
Confidence 888 567899999999999999863
No 26
>PRK10949 protease 4; Provisional
Probab=99.78 E-value=2.7e-18 Score=179.00 Aligned_cols=161 Identities=22% Similarity=0.207 Sum_probs=125.3
Q ss_pred EEEEccccChh-------HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhc---CCCeEEEEccccch
Q 020205 97 IIFLGSQVDDL-------TADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLC---KADVSTICLGLAAS 166 (329)
Q Consensus 97 II~l~g~Id~~-------~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~---~~pV~t~v~G~AAS 166 (329)
||++.|.|.+. ..+.+.++|..+..++..+.|+|+||||||++.++..|+++|+.. ++||++++.++|||
T Consensus 330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS 409 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence 56788888653 356788999988888899999999999999999999999999654 58999999999999
Q ss_pred HHHHHHhcCCCCcEEEecCceEEE------eccCC------C------CCCChhh----------HHHH-HHHHHHHHHH
Q 020205 167 MGAFLLAAGSKGKRYCMPNARVMI------HQPLG------T------AGGKATD----------MSIR-IREMSYHKVK 217 (329)
Q Consensus 167 aas~Ia~AGdkg~R~a~PnS~imI------Hqp~~------~------~~G~~~d----------l~~~-a~el~~~~~~ 217 (329)
+||||+++|| ++++.|++..+. |.-.. | ..|...+ .+.. ...+....+.
T Consensus 410 ggY~iA~aad--~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~ 487 (618)
T PRK10949 410 GGYWISTPAN--YIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKR 487 (618)
T ss_pred HHHHHHHhcC--EEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 699999766432 21110 0 1121111 1111 1234455678
Q ss_pred HHHHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCC
Q 020205 218 LNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 218 i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~ 260 (329)
|.+.+++.+|++.++++++.+ ++.+++++|+++||||+++.-
T Consensus 488 F~~~Va~~R~~~~~~v~~ia~-Grv~tg~~A~~~GLVD~lG~~ 529 (618)
T PRK10949 488 FITLVADSRHKTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDF 529 (618)
T ss_pred HHHHHHhhCCCCHHHHHHHhc-CCcccHHHHHHcCCCccCCCH
Confidence 899999999999999998766 467899999999999999874
No 27
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.78 E-value=7.4e-18 Score=154.00 Aligned_cols=161 Identities=22% Similarity=0.191 Sum_probs=124.2
Q ss_pred EEEEccccChhH-------HHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHH---hcCCCeEEEEccccch
Q 020205 97 IIFLGSQVDDLT-------ADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMK---LCKADVSTICLGLAAS 166 (329)
Q Consensus 97 II~l~g~Id~~~-------a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir---~~~~pV~t~v~G~AAS 166 (329)
||.+.|+|.+.. ...+.+.|..+..++..+.|+|.+|||||++....+|+++|+ .+++||++++.|.|+|
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s 83 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS 83 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 456666665533 367888999888888889999999999999999988888654 5678999999999999
Q ss_pred HHHHHHhcCCCCcEEEecCceEEEeccCC------------C-------CCCC-----hhhHHH-----HHHHHHHHHHH
Q 020205 167 MGAFLLAAGSKGKRYCMPNARVMIHQPLG------------T-------AGGK-----ATDMSI-----RIREMSYHKVK 217 (329)
Q Consensus 167 aas~Ia~AGdkg~R~a~PnS~imIHqp~~------------~-------~~G~-----~~dl~~-----~a~el~~~~~~ 217 (329)
+|++|+++|| .+++.|++.++...... + ..|. ...+.. ....+....+.
T Consensus 84 ~gy~la~~aD--~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~ 161 (211)
T cd07019 84 GGYWISTPAN--YIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKR 161 (211)
T ss_pred HHHHHHHhCC--EEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999 69999998875443220 0 1121 111111 11234556678
Q ss_pred HHHHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCC
Q 020205 218 LNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 218 i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~ 260 (329)
|.+.+++.++++++++.+..+ +.+|+++||+++||||+|...
T Consensus 162 f~~~Va~~R~~~~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~~ 203 (211)
T cd07019 162 FITLVADARHSTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDF 203 (211)
T ss_pred HHHHHHhhCCCCHHHHHHhcC-CcEEeHHHHHHcCCcccCCCH
Confidence 889999999999999988776 578999999999999999874
No 28
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.74 E-value=3.5e-17 Score=159.07 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=109.3
Q ss_pred EEEEccccChhHHHHHHHHHHhh-hhcCCCCCeEEEEeCCCCchhHHHHHHHH---HHhcCCCeEEEEccccchHHHHHH
Q 020205 97 IIFLGSQVDDLTADFIISQLLFL-DAEDSKKDIRLFINSPGGSVTAGMGIYDA---MKLCKADVSTICLGLAASMGAFLL 172 (329)
Q Consensus 97 II~l~g~Id~~~a~~ii~~L~~l-~~~~~~k~I~L~INSPGGsV~ag~aIyd~---Ir~~~~pV~t~v~G~AASaas~Ia 172 (329)
||.+.|.|+......+.+.+..+ ....+.+.|+|+||||||+|.++..++.. ++..+.||++++.++|||+||||+
T Consensus 94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA 173 (330)
T PRK11778 94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA 173 (330)
T ss_pred EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence 55678999876665554444432 11223378999999999999875555554 455568999999999999999999
Q ss_pred hcCCCCcEEEecCceEEEeccCCC------------------CCCChhhH------------HHHHHHHHHHHHHHHHHH
Q 020205 173 AAGSKGKRYCMPNARVMIHQPLGT------------------AGGKATDM------------SIRIREMSYHKVKLNKIL 222 (329)
Q Consensus 173 ~AGdkg~R~a~PnS~imIHqp~~~------------------~~G~~~dl------------~~~a~el~~~~~~i~~iy 222 (329)
|+|| ++++.|.+.++....... ..|...+. +....++....+.|.+.+
T Consensus 174 saAD--~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~V 251 (330)
T PRK11778 174 CVAD--KIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDFV 251 (330)
T ss_pred HhCC--EEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 699999988765433211 12322211 111223445567788888
Q ss_pred HHHcC-CCHHHHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 223 SRATG-KPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 223 a~~tG-~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
++.++ .+ +.++.+. ..+++++|+++||||+|...+
T Consensus 252 a~~R~~l~---~~~va~G-~v~~g~~Al~~GLVD~Ig~~d 287 (330)
T PRK11778 252 QRYRPQLD---IDKVATG-EHWYGQQALELGLVDEIQTSD 287 (330)
T ss_pred HhcCCcCC---HHHHHhC-CCcCHHHHHHCCCCCcCCCHH
Confidence 88775 44 4444554 456899999999999998854
No 29
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.71 E-value=2e-16 Score=145.68 Aligned_cols=154 Identities=20% Similarity=0.144 Sum_probs=122.7
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHh---cCCCeEEEEccccchHHHHHHhcCCCCc
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKL---CKADVSTICLGLAASMGAFLLAAGSKGK 179 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~---~~~pV~t~v~G~AASaas~Ia~AGdkg~ 179 (329)
..+......+++.|..+..++..+.|+|.+|||||.+.+..+|+++|+. .++||++++.+ |+|+||+|+++|| +
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad--~ 101 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAAD--E 101 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCC--E
Confidence 3445667789999999888888999999999999999999999999865 45899999997 9999999999999 6
Q ss_pred EEEecCceEEEeccCCC------------------CCCChh---------hHHHHHH-----HHHHHHHHHHHHHHHHcC
Q 020205 180 RYCMPNARVMIHQPLGT------------------AGGKAT---------DMSIRIR-----EMSYHKVKLNKILSRATG 227 (329)
Q Consensus 180 R~a~PnS~imIHqp~~~------------------~~G~~~---------dl~~~a~-----el~~~~~~i~~iya~~tG 227 (329)
+++.|++.++++..... ..|..+ ++..+.+ .+....+.|.+.+++.++
T Consensus 102 I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R~ 181 (222)
T cd07018 102 IYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASRG 181 (222)
T ss_pred EEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999988754321 012221 1222222 233456678889999999
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCCceeecCC
Q 020205 228 KPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 228 ~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~ 260 (329)
++.++++++.+ ...+++++|++.||||+|...
T Consensus 182 ~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~~ 213 (222)
T cd07018 182 LSPDALEALID-LGGDSAEEALEAGLVDGLAYR 213 (222)
T ss_pred CCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCcH
Confidence 99999999887 567899999999999999864
No 30
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.9e-16 Score=156.06 Aligned_cols=165 Identities=19% Similarity=0.245 Sum_probs=134.1
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEc---cccchHHHHHHh
Q 020205 97 IIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICL---GLAASMGAFLLA 173 (329)
Q Consensus 97 II~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~---G~AASaas~Ia~ 173 (329)
++.++|+|++.+++++.+.|..+++ .....|+|.+|+|||-++++..|.++|..++.||+.|+. +.|+|||+||++
T Consensus 30 vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m 108 (436)
T COG1030 30 VIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILM 108 (436)
T ss_pred EEEecCccCHHHHHHHHHHHHHHHh-CCCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHH
Confidence 5678999999999999999997765 456899999999999999999999999999999999887 479999999999
Q ss_pred cCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCC
Q 020205 174 AGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGL 253 (329)
Q Consensus 174 AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GL 253 (329)
++| ..+|.|++.++-.+|..+. |+..+-.. ..+.-....+-.++.+|++.+..+++.+++.-++++||.++|+
T Consensus 109 ~~h--iaaMAPgT~iGaa~Pi~~~-g~~~~~~~----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~v 181 (436)
T COG1030 109 ATH--IAAMAPGTNIGAATPIAGG-GTSAKEAN----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGV 181 (436)
T ss_pred hcC--hhhhCCCCcccccceecCC-CCCccchh----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCc
Confidence 999 4788899999999998654 33222111 1111123345578889999999999999999999999999999
Q ss_pred ceeecCCCCCcccccCC
Q 020205 254 VDAVIDDGKPGLVAPTS 270 (329)
Q Consensus 254 ID~I~~~~~~~~~~~~~ 270 (329)
||-|..+. .+++..++
T Consensus 182 id~iA~~~-~ell~~~~ 197 (436)
T COG1030 182 IDLIARDL-NELLKKLD 197 (436)
T ss_pred cccccCCH-HHHHHHcc
Confidence 99998764 34444433
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.54 E-value=1.3e-13 Score=130.34 Aligned_cols=90 Identities=26% Similarity=0.280 Sum_probs=80.6
Q ss_pred cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEE
Q 020205 102 SQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRY 181 (329)
Q Consensus 102 g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~ 181 (329)
..|+.+.++.+.+.+.... +.++|.|.||||||.|.++..|.++|+.++.+|+++|-..|.|||++|+++|| +++
T Consensus 70 ~~I~i~dse~v~raI~~~~---~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaAD--eIv 144 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAP---KDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAAD--EIV 144 (285)
T ss_pred eeEcHhhHHHHHHHHHhcC---CCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCC--eEE
Confidence 4588888999988887654 35789999999999999999999999999999999999999999999999999 699
Q ss_pred EecCceEEEeccCCC
Q 020205 182 CMPNARVMIHQPLGT 196 (329)
Q Consensus 182 a~PnS~imIHqp~~~ 196 (329)
|.|+|.++--.|..+
T Consensus 145 M~p~a~LGpiDPqi~ 159 (285)
T PF01972_consen 145 MGPGAVLGPIDPQIG 159 (285)
T ss_pred ECCCCccCCCCcccc
Confidence 999999997777643
No 32
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.36 E-value=1.1e-11 Score=129.29 Aligned_cols=152 Identities=17% Similarity=0.033 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHhhhhcCCCCCeEEEEeC-CCCchhHHHHHHHHHHhc---CCCeEEEEccccchHHHHHHhcCCCCcEEE
Q 020205 107 LTADFIISQLLFLDAEDSKKDIRLFINS-PGGSVTAGMGIYDAMKLC---KADVSTICLGLAASMGAFLLAAGSKGKRYC 182 (329)
Q Consensus 107 ~~a~~ii~~L~~l~~~~~~k~I~L~INS-PGGsV~ag~aIyd~Ir~~---~~pV~t~v~G~AASaas~Ia~AGdkg~R~a 182 (329)
.....++.+|..+..++..+.|+|.||+ |||.+....+|+++|+.. ++||+++..+ ++|++|||+++|| ++|+
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs~AD--~I~~ 152 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLASFAD--EIIL 152 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhhhCC--EEEE
Confidence 4567899999999988999999999996 677888889999998865 4899998775 4799999999999 6999
Q ss_pred ecCceEEEeccCCC------------------CCCCh---------hhHHHHHH-----HHHHHHHHHHHHHHHHcCCCH
Q 020205 183 MPNARVMIHQPLGT------------------AGGKA---------TDMSIRIR-----EMSYHKVKLNKILSRATGKPV 230 (329)
Q Consensus 183 ~PnS~imIHqp~~~------------------~~G~~---------~dl~~~a~-----el~~~~~~i~~iya~~tG~s~ 230 (329)
.|.+.++++..... ..|++ ++|....+ .+....+.+.+.+++.++++.
T Consensus 153 ~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~ 232 (584)
T TIGR00705 153 NPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPV 232 (584)
T ss_pred CCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 99998877643211 12221 23333333 233455678888999999999
Q ss_pred HHHHhhhcCCce-------ecHHHHHHcCCceeecCCC
Q 020205 231 QQIELDTDRDNF-------MDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 231 e~I~~l~d~d~~-------lta~EAve~GLID~I~~~~ 261 (329)
+++.+..+.-.| +++++|++.||||+|...+
T Consensus 233 ~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~d 270 (584)
T TIGR00705 233 QQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYA 270 (584)
T ss_pred HHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHH
Confidence 999888775443 3899999999999998643
No 33
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.31 E-value=2.2e-11 Score=106.26 Aligned_cols=109 Identities=21% Similarity=0.175 Sum_probs=76.7
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCC------------------CCCCh-------hh
Q 020205 149 MKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGT------------------AGGKA-------TD 203 (329)
Q Consensus 149 Ir~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~------------------~~G~~-------~d 203 (329)
.+..++||++++.+.|+|++|+|+++|+ ++++.|.+.++....... ..|+. ++
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad--~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAAD--EIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSS--EEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCC--EEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 4677899999999999999999999999 699999998765433210 12222 22
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCC
Q 020205 204 MSIRI-----REMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 204 l~~~a-----~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~ 260 (329)
+.... +.+....+.|.+.+++.+|++.+++.++.+. ..|++++|+++||||+|...
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~~ 140 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGTF 140 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCCH
Confidence 22222 2334456678889999999999999998885 78899999999999999864
No 34
>PRK10949 protease 4; Provisional
Probab=99.25 E-value=9.8e-11 Score=122.70 Aligned_cols=153 Identities=18% Similarity=0.071 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHH-HHHHHHHHhcC---CCeEEEEccccchHHHHHHhcCCCCcEE
Q 020205 106 DLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAG-MGIYDAMKLCK---ADVSTICLGLAASMGAFLLAAGSKGKRY 181 (329)
Q Consensus 106 ~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag-~aIyd~Ir~~~---~pV~t~v~G~AASaas~Ia~AGdkg~R~ 181 (329)
+.....++++|..+..++..+.|+|+||||||...+. .+|+++|+..+ +||+++ ...++|.+|||+++|| ++|
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD--~I~ 170 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFAN--KIY 170 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCC--EEE
Confidence 3445678999999998889999999999999876655 78999887654 799986 5666899999999999 699
Q ss_pred EecCceEEEeccCCC------------------CCCCh---------hhHHHHHHH-----HHHHHHHHHHHHHHHcCCC
Q 020205 182 CMPNARVMIHQPLGT------------------AGGKA---------TDMSIRIRE-----MSYHKVKLNKILSRATGKP 229 (329)
Q Consensus 182 a~PnS~imIHqp~~~------------------~~G~~---------~dl~~~a~e-----l~~~~~~i~~iya~~tG~s 229 (329)
+.|.+.++++..... ..|.+ ++|..+.++ +....+.+.+.+++.++++
T Consensus 171 l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~ 250 (618)
T PRK10949 171 LSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIT 250 (618)
T ss_pred ECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999998887754321 11221 233333333 2334567888899999999
Q ss_pred HHHHHhhhc----C---CceecHHHHHHcCCceeecCCC
Q 020205 230 VQQIELDTD----R---DNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 230 ~e~I~~l~d----~---d~~lta~EAve~GLID~I~~~~ 261 (329)
.+++....+ . ..-+++++|++.||||+|...+
T Consensus 251 ~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~d 289 (618)
T PRK10949 251 PQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSA 289 (618)
T ss_pred HHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHH
Confidence 998854332 1 1135899999999999998754
No 35
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.91 E-value=3.4e-08 Score=87.63 Aligned_cols=139 Identities=19% Similarity=0.071 Sum_probs=97.5
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchh-----------------HHHHHHHHHHhcCCCeEEEEc
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVT-----------------AGMGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~-----------------ag~aIyd~Ir~~~~pV~t~v~ 161 (329)
.++..+.+.+.+.+..++.++..+.|+|.-+ |.|+++. ....++..|..+++||++.+.
T Consensus 22 ~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~ 101 (195)
T cd06558 22 ALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVN 101 (195)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 4577888889999998887666666666655 5566643 234556667788999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|.++|..+++++| .|++.+++.|.+.....+..-... ....+.++.| .....+++-...
T Consensus 102 G~a~g~G~~la~~~D--~~i~~~~~~~~~pe~~~G~~p~~g---------------~~~~l~~~~g--~~~a~~~~l~g~ 162 (195)
T cd06558 102 GAALGGGLELALACD--IRIAAEDAKFGLPEVKLGLVPGGG---------------GTQRLPRLVG--PARARELLLTGR 162 (195)
T ss_pred CeeecHHHHHHHhCC--EEEecCCCEEechhhhcCCCCCCc---------------HHHHHHHHhC--HHHHHHHHHcCC
Confidence 999999999999999 699999999987766544220000 0011222222 222333343467
Q ss_pred eecHHHHHHcCCceeecCC
Q 020205 242 FMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~ 260 (329)
.++++||++.||+|++++.
T Consensus 163 ~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 163 RISAEEALELGLVDEVVPD 181 (195)
T ss_pred ccCHHHHHHcCCCCeecCh
Confidence 8899999999999999875
No 36
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=98.70 E-value=2.1e-07 Score=85.20 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=106.7
Q ss_pred hhhcCcEE--EEccccChhHHHHHHHHHHhhhhcCCCCCeE-EEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccchH
Q 020205 91 MLLRQRII--FLGSQVDDLTADFIISQLLFLDAEDSKKDIR-LFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASM 167 (329)
Q Consensus 91 ~ll~~rII--~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~-L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AASa 167 (329)
..+.+|.. .+.+++-+..+......+.. +.+...++ +-+|||||+|..++++-..||+.+..+.+--..+|+|+
T Consensus 70 ~~~dgr~l~VvVse~~a~~da~sal~~lir---~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~Casa 146 (245)
T COG3904 70 KTLDGRQLPVVVSEPGANVDAASALGRLIR---KAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASA 146 (245)
T ss_pred hhccCceeeEEEcCCCCCccHHHHHHHHHh---ccCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhcc
Confidence 45566655 35555544444433344432 23344455 78999999999999999999999999888888999999
Q ss_pred HHHHHhcCCCCcEEEecCceEEEeccCCCCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhc----CCce
Q 020205 168 GAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGK-ATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTD----RDNF 242 (329)
Q Consensus 168 as~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~-~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d----~d~~ 242 (329)
+.+++++|. .|++-+.+.+++||+.....-. .... +++...+..-.-...|-+..|....-+..+.. +=++
T Consensus 147 Cpl~fagGv--rRvve~~ayiGVHq~~~~g~~~r~~~~--~a~Sanq~~tar~a~ylrEMgigpgLlq~ml~tpp~dir~ 222 (245)
T COG3904 147 CPLMFAGGV--RRVVEDFAYIGVHQITTTGRRERIVNG--KAKSANQKVTARLAAYLREMGIGPGLLQMMLATPPSDIRQ 222 (245)
T ss_pred chhhhhcce--eeeecccceeeeeeccccCCccccCcH--hhhhhhhhhHHHHHHHHHHcCCCHHHHHHHhcCChHhhhh
Confidence 999999998 6999999999999998543221 1111 11211111111122355567887765554443 3378
Q ss_pred ecHHHHHHcCCcee
Q 020205 243 MDAWEAKEYGLVDA 256 (329)
Q Consensus 243 lta~EAve~GLID~ 256 (329)
++.+|..++.|+.+
T Consensus 223 l~~kem~~~~L~t~ 236 (245)
T COG3904 223 LGLKEMTAMKLVTS 236 (245)
T ss_pred hhHHHHhhhccccc
Confidence 99999999988765
No 37
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.69 E-value=3.1e-07 Score=86.06 Aligned_cols=139 Identities=19% Similarity=0.123 Sum_probs=93.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCchhH--------------HHHHHHHHHhcCCCeEEEEccccc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLF----INSPGGSVTA--------------GMGIYDAMKLCKADVSTICLGLAA 165 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~----INSPGGsV~a--------------g~aIyd~Ir~~~~pV~t~v~G~AA 165 (329)
++..+.+.+...+..++.++..+.|+|. .=|.|+++.+ ...+++.|..++.||++.+.|.|.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~ 108 (259)
T PRK06688 29 LTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAV 108 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 7888888999998888765555555553 2245555432 234666778889999999999999
Q ss_pred hHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecH
Q 020205 166 SMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDA 245 (329)
Q Consensus 166 Saas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta 245 (329)
++|..++++|| .|++.+++.|.+.....|... .... . ..+.+..|. ....+++-....+++
T Consensus 109 GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p---~~g~-----~-------~~l~~~~G~--~~a~~l~l~g~~~~a 169 (259)
T PRK06688 109 GVGVSLALACD--LVYASESAKFSLPFAKLGLCP---DAGG-----S-------ALLPRLIGR--ARAAEMLLLGEPLSA 169 (259)
T ss_pred cHHHHHHHhCC--EEEecCCCEecCchhhcCCCC---Ccch-----h-------hHHHHHhhH--HHHHHHHHhCCccCH
Confidence 99999999999 699999999887654433211 1000 0 001111222 122333333467999
Q ss_pred HHHHHcCCceeecCCC
Q 020205 246 WEAKEYGLVDAVIDDG 261 (329)
Q Consensus 246 ~EAve~GLID~I~~~~ 261 (329)
+||+++||||+|.+.+
T Consensus 170 ~eA~~~Glv~~v~~~~ 185 (259)
T PRK06688 170 EEALRIGLVNRVVPAA 185 (259)
T ss_pred HHHHHcCCcceecCHH
Confidence 9999999999998743
No 38
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.69 E-value=6e-07 Score=82.87 Aligned_cols=139 Identities=21% Similarity=0.164 Sum_probs=92.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH---------------HHHHHHHHhcCCCeEEEEcccc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG---------------MGIYDAMKLCKADVSTICLGLA 164 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag---------------~aIyd~Ir~~~~pV~t~v~G~A 164 (329)
++..+...+.+.+..++.++..+.|+|.=+ |-|+++... ..+++.|..+++||++.+.|.|
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 110 (222)
T PRK05869 31 LTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYA 110 (222)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEe
Confidence 777888888888888876655555554311 334553321 2456678888999999999999
Q ss_pred chHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceec
Q 020205 165 ASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMD 244 (329)
Q Consensus 165 ASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lt 244 (329)
..+|..++++|| .|++.+++.|.+.....|.. -...- . ..+.+..|. ....+++-...+|+
T Consensus 111 ~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~ig~--~~a~~l~ltg~~~~ 171 (222)
T PRK05869 111 LGAGLTLALAAD--WRVSGDNVKFGATEILAGLA---PSGDG----M--------ARLTRAAGP--SRAKELVFSGRFFD 171 (222)
T ss_pred ecHHHHHHHhCC--EEEecCCCEEcCchhccCCC---CCccH----H--------HHHHHHhCH--HHHHHHHHcCCCcC
Confidence 999999999999 68999999887654433321 11100 0 012222332 22334444456899
Q ss_pred HHHHHHcCCceeecCCC
Q 020205 245 AWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 245 a~EAve~GLID~I~~~~ 261 (329)
++||+++||+|+|.+.+
T Consensus 172 a~eA~~~Glv~~vv~~~ 188 (222)
T PRK05869 172 AEEALALGLIDEMVAPD 188 (222)
T ss_pred HHHHHHCCCCCEeeCch
Confidence 99999999999998753
No 39
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=5.5e-07 Score=84.57 Aligned_cols=142 Identities=15% Similarity=0.088 Sum_probs=96.1
Q ss_pred EEEccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH-----------------HHHHHHHHhc
Q 020205 98 IFLGSQ----VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG-----------------MGIYDAMKLC 152 (329)
Q Consensus 98 I~l~g~----Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag-----------------~aIyd~Ir~~ 152 (329)
|.++.+ ++..+...+.+.|..++.++..+.|+|.=+ |.|+++.+. ..+++.|..+
T Consensus 17 itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (257)
T PRK06495 17 VTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIREC 96 (257)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhC
Confidence 345554 788888889888888876555554544311 334444321 2345667788
Q ss_pred CCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 020205 153 KADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQ 232 (329)
Q Consensus 153 ~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~ 232 (329)
++||++.|.|.|..+|.-++++|| .|++.+++.|.+-....|..|-.. .+.+..|. ..
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~~~~~------------------~l~~~~g~--~~ 154 (257)
T PRK06495 97 AKPVIAAVNGPALGAGLGLVASCD--IIVASENAVFGLPEIDVGLAGGGK------------------HAMRLFGH--SL 154 (257)
T ss_pred CCCEEEEECCeeehhHHHHHHhCC--EEEecCCCEeeChhhccCccccHH------------------HHHHHhCH--HH
Confidence 999999999999999999999999 689999999876555444332110 01222332 23
Q ss_pred HHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 233 IELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 233 I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
..+++-....++++||+++||||+|.+.+
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (257)
T PRK06495 155 TRRMMLTGYRVPAAELYRRGVIEACLPPE 183 (257)
T ss_pred HHHHHHcCCeeCHHHHHHcCCcceecCHH
Confidence 34444446789999999999999998753
No 40
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.64 E-value=9e-07 Score=84.09 Aligned_cols=140 Identities=21% Similarity=0.223 Sum_probs=92.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH-------------------HHHHHHHHhcCCCeEEEE
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG-------------------MGIYDAMKLCKADVSTIC 160 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag-------------------~aIyd~Ir~~~~pV~t~v 160 (329)
++..+...+.+.|..++.++..+.|+|.=+ |-|+++.+. ..+++.|..++.||++.|
T Consensus 41 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 120 (277)
T PRK08258 41 LTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAV 120 (277)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 677788888888887775544444444211 445555331 245667788899999999
Q ss_pred ccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCC
Q 020205 161 LGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRD 240 (329)
Q Consensus 161 ~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d 240 (329)
.|.|..+|.-|+++|| .|++.+++.|.+.....|... .++.. . ..+.+..|.. ...+++-..
T Consensus 121 ~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~~Gl~p--~~~g~-----~-------~~l~~~vG~~--~a~~l~ltg 182 (277)
T PRK08258 121 DGVCAGAGAILAMASD--LRLGTPSAKTAFLFTRVGLAG--ADMGA-----C-------ALLPRIIGQG--RASELLYTG 182 (277)
T ss_pred CCeeehHHHHHHHhCC--EEEecCCCEEeccccccCcCC--CCchH-----H-------HHHHHHhCHH--HHHHHHHcC
Confidence 9999999999999999 689999999987665444321 01100 0 0111222322 223334335
Q ss_pred ceecHHHHHHcCCceeecCCC
Q 020205 241 NFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 241 ~~lta~EAve~GLID~I~~~~ 261 (329)
..|+++||+++||||+|.+.+
T Consensus 183 ~~~~a~eA~~~Glv~~vv~~~ 203 (277)
T PRK08258 183 RSMSAEEGERWGFFNRLVEPE 203 (277)
T ss_pred CCCCHHHHHHcCCCcEecCHH
Confidence 689999999999999998753
No 41
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.63 E-value=8.5e-07 Score=83.29 Aligned_cols=139 Identities=18% Similarity=0.053 Sum_probs=91.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH------------------HHHHHHHHhcCCCeEEEEc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG------------------MGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag------------------~aIyd~Ir~~~~pV~t~v~ 161 (329)
++..+...+.+.|..++.++..+.|+|.= =|.|+++.+. ..++..|..+++||++.|.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 106 (260)
T PRK07511 27 LHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVE 106 (260)
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 77888888888888877655455444421 1344554321 2345567778999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|..|+++|| .|++.+++.|.+.....|.. -+... . ..+.+..| .....+++-...
T Consensus 107 G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~Gl~---p~~g~-----~-------~~l~~~vg--~~~a~~l~ltg~ 167 (260)
T PRK07511 107 GAAAGAGFSLALACD--LLVAARDAKFVMAYVKVGLT---PDGGG-----S-------WFLARALP--RQLATELLLEGK 167 (260)
T ss_pred CeeehHHHHHHHhCC--EEEeeCCCEEeccccccCcC---CCchH-----H-------HHHHHHhC--HHHHHHHHHhCC
Confidence 999999999999999 68999999888655443321 11100 0 01122223 223344444456
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
.|+++||++.||||+|.+.+
T Consensus 168 ~~~a~eA~~~Glv~~vv~~~ 187 (260)
T PRK07511 168 PISAERLHALGVVNRLAEPG 187 (260)
T ss_pred CCCHHHHHHcCCccEeeCch
Confidence 89999999999999998753
No 42
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.62 E-value=9.2e-07 Score=83.25 Aligned_cols=139 Identities=19% Similarity=0.089 Sum_probs=91.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEE-----EeCCCCchhH--------------HHHHHHHHHhcCCCeEEEEcccc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLF-----INSPGGSVTA--------------GMGIYDAMKLCKADVSTICLGLA 164 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~-----INSPGGsV~a--------------g~aIyd~Ir~~~~pV~t~v~G~A 164 (329)
++..+.+.+...+..++.++..+.|+|. .=|.|+++.+ ...++..|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (261)
T PRK03580 26 IDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYA 105 (261)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEECCee
Confidence 6777888888888888765545555542 1245555532 12345667888999999999999
Q ss_pred chHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceec
Q 020205 165 ASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMD 244 (329)
Q Consensus 165 ASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lt 244 (329)
..+|.-++++|| -|++.+++.|.+-....|. .-++... ..+.+..|. ....+++-....++
T Consensus 106 ~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~---~p~~g~~------------~~l~~~vg~--~~a~~l~l~g~~~~ 166 (261)
T PRK03580 106 FGGGFELALAAD--FIVCADNASFALPEAKLGI---VPDSGGV------------LRLPKRLPP--AIANEMVMTGRRMD 166 (261)
T ss_pred ehHHHHHHHHCC--EEEecCCCEEeCcccccCc---CCCccHH------------HHHHHHhCH--HHHHHHHHhCCccC
Confidence 999999999999 6899999988653332221 1111100 011122232 22333333356899
Q ss_pred HHHHHHcCCceeecCCC
Q 020205 245 AWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 245 a~EAve~GLID~I~~~~ 261 (329)
++||+++||||+|.+.+
T Consensus 167 a~eA~~~Glv~~vv~~~ 183 (261)
T PRK03580 167 AEEALRWGIVNRVVPQA 183 (261)
T ss_pred HHHHHHcCCCcEecCHh
Confidence 99999999999998754
No 43
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.60 E-value=1.4e-06 Score=81.79 Aligned_cols=140 Identities=14% Similarity=0.075 Sum_probs=93.6
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhH-------------HHHHHHHHHhcCCCeEEEEccccc
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTA-------------GMGIYDAMKLCKADVSTICLGLAA 165 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~a-------------g~aIyd~Ir~~~~pV~t~v~G~AA 165 (329)
.++..+.+.+.+.+..++.++..+.|+|.= =|.|+++.+ ...+++.|..+++||++.+.|.|.
T Consensus 25 al~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 104 (255)
T PRK09674 25 ALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYAL 104 (255)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEee
Confidence 367788888888888877655555555421 144555532 123566678899999999999999
Q ss_pred hHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecH
Q 020205 166 SMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDA 245 (329)
Q Consensus 166 Saas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta 245 (329)
.+|.-|+++|| .|++.+++.|.+.....|.. -+..- ...+.+..|. ....+++-....|++
T Consensus 105 GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~ig~--~~a~~l~l~g~~~~a 165 (255)
T PRK09674 105 GAGCELALLCD--IVIAGENARFGLPEITLGIM---PGAGG------------TQRLIRSVGK--SLASQMVLTGESITA 165 (255)
T ss_pred hHHHHHHHhCC--EEEecCCCEEeCchhhcCCC---CCccH------------HHHHHHHhCH--HHHHHHHHcCCccCH
Confidence 99999999999 69999999987655443321 11100 0012223332 233344444567999
Q ss_pred HHHHHcCCceeecCCC
Q 020205 246 WEAKEYGLVDAVIDDG 261 (329)
Q Consensus 246 ~EAve~GLID~I~~~~ 261 (329)
+||+++||||+|...+
T Consensus 166 ~eA~~~Glv~~vv~~~ 181 (255)
T PRK09674 166 QQAQQAGLVSEVFPPE 181 (255)
T ss_pred HHHHHcCCCcEecChH
Confidence 9999999999998754
No 44
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.60 E-value=1.7e-06 Score=81.58 Aligned_cols=139 Identities=18% Similarity=0.085 Sum_probs=93.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhH-------------HHHHHHHHHhcCCCeEEEEccccch
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTA-------------GMGIYDAMKLCKADVSTICLGLAAS 166 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~a-------------g~aIyd~Ir~~~~pV~t~v~G~AAS 166 (329)
++..+.+.+...|..++.++..+.|+|.=+ |.|+++.+ ...++..|..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G 107 (258)
T PRK06190 28 LSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVT 107 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence 788888889888888876555555555321 45666542 1345677888999999999999999
Q ss_pred HHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHH
Q 020205 167 MGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAW 246 (329)
Q Consensus 167 aas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~ 246 (329)
+|.-++++|| .|++.+++.|.+-....|. .-+... ...+.+..|. ....+++-....|+++
T Consensus 108 gG~~lalacD--~~ia~~~a~f~~pe~~~Gl---~p~~g~------------~~~l~r~vG~--~~a~~l~ltg~~~~a~ 168 (258)
T PRK06190 108 GGLELALACD--ILIASERARFADTHARVGI---LPGWGL------------SVRLPQKVGI--GRARRMSLTGDFLDAA 168 (258)
T ss_pred HHHHHHHhCC--EEEEeCCCEEECcccccCc---CCCccH------------HHHHHHHhCH--HHHHHHHHhCCccCHH
Confidence 9999999999 6899999988753332221 111100 0112222332 2333444345679999
Q ss_pred HHHHcCCceeecCCC
Q 020205 247 EAKEYGLVDAVIDDG 261 (329)
Q Consensus 247 EAve~GLID~I~~~~ 261 (329)
||+++||||++...+
T Consensus 169 eA~~~GLv~~vv~~~ 183 (258)
T PRK06190 169 DALRAGLVTEVVPHD 183 (258)
T ss_pred HHHHcCCCeEecCHh
Confidence 999999999998743
No 45
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.58 E-value=1.1e-06 Score=82.68 Aligned_cols=138 Identities=19% Similarity=0.130 Sum_probs=93.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCchhH---------------HHHHHHHHHhcCCCeEEEEccc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI-----NSPGGSVTA---------------GMGIYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-----NSPGGsV~a---------------g~aIyd~Ir~~~~pV~t~v~G~ 163 (329)
++..+...+...+..++.++..+.|+|.= =|.|+++.+ ...+++.|..+++||++.|.|.
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 110 (256)
T PRK06143 31 LGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGW 110 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 78888888988888887655555555422 134455432 1234566778899999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcee
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFM 243 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~l 243 (329)
|..+|.-++++|| .|++.++++|.+-....|. +.... . ..+.+..|.. ...+++-....+
T Consensus 111 a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~---p~~~~------~-------~~l~~~iG~~--~a~~l~l~g~~~ 170 (256)
T PRK06143 111 CLGGGLELAAACD--LRIAAHDAQFGMPEVRVGI---PSVIH------A-------ALLPRLIGWA--RTRWLLLTGETI 170 (256)
T ss_pred EeehhHHHHHhCC--EEEecCCCEEeCCccccCC---CCccH------H-------HHHHHhcCHH--HHHHHHHcCCcC
Confidence 9999999999999 6899999988754333232 11110 0 1123333432 334444445689
Q ss_pred cHHHHHHcCCceeecCCC
Q 020205 244 DAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 244 ta~EAve~GLID~I~~~~ 261 (329)
+++||+++||||+|++.+
T Consensus 171 ~a~eA~~~Glv~~vv~~~ 188 (256)
T PRK06143 171 DAAQALAWGLVDRVVPLA 188 (256)
T ss_pred CHHHHHHCCCcCeecCHH
Confidence 999999999999998753
No 46
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.55 E-value=1.9e-06 Score=79.83 Aligned_cols=138 Identities=20% Similarity=0.066 Sum_probs=92.2
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC------CCch---------------hHHHHHHHHHHhcCCCeEEEEc
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFINSP------GGSV---------------TAGMGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSP------GGsV---------------~ag~aIyd~Ir~~~~pV~t~v~ 161 (329)
.++..+...+...|..++.++..+ .|.|.+. |+++ .....++..|..++.||++.+.
T Consensus 21 ~l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~ 98 (245)
T PF00378_consen 21 ALNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVN 98 (245)
T ss_dssp EBSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEES
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeeccc
Confidence 377888889999999888765555 3334443 4443 3345567778889999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|..++++|| .|++.+++.|.+.....|..-..--+. .+.+..|... ..+++-...
T Consensus 99 G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~G~~p~~g~~~---------------~l~r~~g~~~--a~~l~l~g~ 159 (245)
T PF00378_consen 99 GHAVGGGFELALACD--FRIAAEDAKFGFPEVRLGIFPGAGGTF---------------RLPRLIGPSR--ARELLLTGE 159 (245)
T ss_dssp SEEETHHHHHHHHSS--EEEEETTTEEETGGGGGTSSSTSTHHH---------------HHHHHHHHHH--HHHHHHHTC
T ss_pred ccccccccccccccc--eEEeecccceeeeecccCccccccccc---------------ccceeeeccc--ccccccccc
Confidence 999999999999999 699999999776554433211111000 1111222211 122222245
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
.++++||+++||||+|++++
T Consensus 160 ~~~a~eA~~~Glv~~v~~~~ 179 (245)
T PF00378_consen 160 PISAEEALELGLVDEVVPDE 179 (245)
T ss_dssp EEEHHHHHHTTSSSEEESGG
T ss_pred cchhHHHHhhcceeEEcCch
Confidence 78999999999999999864
No 47
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.54 E-value=1.7e-06 Score=81.54 Aligned_cols=138 Identities=12% Similarity=0.047 Sum_probs=89.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe------CCCCchhHH--------------HHHHHHHHhcCCCeEEEEccc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN------SPGGSVTAG--------------MGIYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN------SPGGsV~ag--------------~aIyd~Ir~~~~pV~t~v~G~ 163 (329)
++..+...+...+..++.++ .+.|+|.=+ |-|+++... ..++..|+.+++||++.+.|.
T Consensus 28 l~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~ 106 (261)
T PRK11423 28 LSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGS 106 (261)
T ss_pred CCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecE
Confidence 77888888888888777543 554444321 345554321 235566778899999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcee
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFM 243 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~l 243 (329)
|..+|.-|+++|| -|++.+++.|.+-....|.. -+..- + ..+.+..|. ....+++-....+
T Consensus 107 a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---~~~g~----~--------~~l~~~vg~--~~a~~l~l~g~~~ 167 (261)
T PRK11423 107 VWGGAFELIMSCD--LIIAASTSTFAMTPANLGVP---YNLSG----I--------LNFTNDAGF--HIVKEMFFTASPI 167 (261)
T ss_pred EechHHHHHHhCC--EEEecCCCEecCchhhcCCC---CCccH----H--------HHHHHHhHH--HHHHHHHHcCCCc
Confidence 9999999999999 68999999887544332221 11100 0 011122222 2233333335689
Q ss_pred cHHHHHHcCCceeecCCC
Q 020205 244 DAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 244 ta~EAve~GLID~I~~~~ 261 (329)
+++||+++||||+|.+.+
T Consensus 168 ~a~eA~~~GLv~~vv~~~ 185 (261)
T PRK11423 168 TAQRALAVGILNHVVEVE 185 (261)
T ss_pred CHHHHHHcCCcCcccCHH
Confidence 999999999999998753
No 48
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.53 E-value=2.7e-06 Score=80.13 Aligned_cols=139 Identities=18% Similarity=0.097 Sum_probs=90.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhH-------------HHHHHHHHHhcCCCeEEEEccccch
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTA-------------GMGIYDAMKLCKADVSTICLGLAAS 166 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~a-------------g~aIyd~Ir~~~~pV~t~v~G~AAS 166 (329)
++..+...+...+..++.++..+.|+|.= =|.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 111 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALG 111 (261)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEc
Confidence 77788888888888877655445555431 144455432 1235566778899999999999999
Q ss_pred HHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHH
Q 020205 167 MGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAW 246 (329)
Q Consensus 167 aas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~ 246 (329)
+|.-++++|| .|++.+++.|.+-....|.. -+... . ..+.+..|.. ...+++-....|+++
T Consensus 112 gG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~vG~~--~a~~l~l~g~~~~a~ 172 (261)
T PRK08138 112 GGCELAMHAD--IIVAGESASFGQPEIKVGLM---PGAGG----T--------QRLVRAVGKF--KAMRMALTGCMVPAP 172 (261)
T ss_pred HHHHHHHhCC--EEEecCCCEeeCcccccccC---CCCcH----H--------HHHHHHhCHH--HHHHHHHcCCCCCHH
Confidence 9999999999 68999999887543332211 11100 0 0122223322 233344335679999
Q ss_pred HHHHcCCceeecCCC
Q 020205 247 EAKEYGLVDAVIDDG 261 (329)
Q Consensus 247 EAve~GLID~I~~~~ 261 (329)
||+++||||+|...+
T Consensus 173 eA~~~Glv~~vv~~~ 187 (261)
T PRK08138 173 EALAIGLVSEVVEDE 187 (261)
T ss_pred HHHHCCCCcEecCch
Confidence 999999999998754
No 49
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=2.4e-06 Score=80.08 Aligned_cols=136 Identities=15% Similarity=0.094 Sum_probs=91.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCchhHH----------------HHHHHHHHhcCCCeEEEEccc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLF----INSPGGSVTAG----------------MGIYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~----INSPGGsV~ag----------------~aIyd~Ir~~~~pV~t~v~G~ 163 (329)
++..+...+...+..++.++..+.|+|. .=|-|+++.+- ..++..|..+++||++.|.|.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~ 104 (249)
T PRK07938 25 LPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGF 104 (249)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 7777888888888877765555544443 11445665421 124456778899999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcee
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFM 243 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~l 243 (329)
|..+|.-|+++|| -|++.+++.|.+-....|..|-.. .+.+..|. ....+++-....+
T Consensus 105 a~GgG~~Lal~cD--~ria~~~a~f~~pe~~~G~~g~~~------------------~l~~~vg~--~~a~~l~ltg~~~ 162 (249)
T PRK07938 105 CLGGGIGLVGNAD--VIVASDDATFGLPEVDRGALGAAT------------------HLQRLVPQ--HLMRALFFTAATI 162 (249)
T ss_pred EeehHHHHHHhCC--EEEEeCCCEeeCccceecCchhHH------------------HHHHhcCH--HHHHHHHHhCCcC
Confidence 9999999999999 689999998876443333222100 12222332 2233444345689
Q ss_pred cHHHHHHcCCceeecCCC
Q 020205 244 DAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 244 ta~EAve~GLID~I~~~~ 261 (329)
+++||+++||||+|.+.+
T Consensus 163 ~a~eA~~~Glv~~vv~~~ 180 (249)
T PRK07938 163 TAAELHHFGSVEEVVPRD 180 (249)
T ss_pred CHHHHHHCCCccEEeCHH
Confidence 999999999999998743
No 50
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=2e-06 Score=80.84 Aligned_cols=139 Identities=17% Similarity=0.109 Sum_probs=90.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCchhHH-------------------HHHHHHHHhcCCCeEEE
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN-----SPGGSVTAG-------------------MGIYDAMKLCKADVSTI 159 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN-----SPGGsV~ag-------------------~aIyd~Ir~~~~pV~t~ 159 (329)
++..+...+.+.|..++.++..+.|+|.=+ |-|+++.+- ..+++.|..+++||++.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (260)
T PRK05980 27 LNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAA 106 (260)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 777888888888888776555555554321 234544210 12445677889999999
Q ss_pred EccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcC
Q 020205 160 CLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDR 239 (329)
Q Consensus 160 v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~ 239 (329)
+.|.|..+|.-|+++|| .|++.+++.|++-....|.. -+... ...+.+..|. ....+++-.
T Consensus 107 v~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~vG~--~~a~~l~l~ 167 (260)
T PRK05980 107 VNGLAFGGGCEITEAVH--LAIASERALFAKPEIRLGMP---PTFGG------------TQRLPRLAGR--KRALELLLT 167 (260)
T ss_pred EcCEEEhhhhHHhHhCC--EEEecCCCEecCcccccCCC---CCchH------------hhHHHhhcCH--HHHHHHHHc
Confidence 99999999999999999 68999999887533322211 11100 0012222332 223344434
Q ss_pred CceecHHHHHHcCCceeecCCC
Q 020205 240 DNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 240 d~~lta~EAve~GLID~I~~~~ 261 (329)
...++++||+++||||+|+..+
T Consensus 168 g~~~~a~eA~~~Glv~~vv~~~ 189 (260)
T PRK05980 168 GDAFSAERALEIGLVNAVVPHE 189 (260)
T ss_pred CCccCHHHHHHcCCCCcccCHH
Confidence 5679999999999999998754
No 51
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.52 E-value=2.6e-06 Score=80.04 Aligned_cols=139 Identities=19% Similarity=0.104 Sum_probs=91.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCchhHH--------------HHHHHHHHhcCCCeEEEEcccc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI-----NSPGGSVTAG--------------MGIYDAMKLCKADVSTICLGLA 164 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-----NSPGGsV~ag--------------~aIyd~Ir~~~~pV~t~v~G~A 164 (329)
++..+...+...|..++.++..+.|+|.= =|.||++.+- ..+++.|..+++||++.|.|.|
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYA 105 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 67778888888888877655555555431 1445665431 2355678888999999999999
Q ss_pred chHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceec
Q 020205 165 ASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMD 244 (329)
Q Consensus 165 ASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lt 244 (329)
..+|.-++++|| -|++.+++.|.+-.+..|.. +.... . ..+.+..|.. ...+++-....|+
T Consensus 106 ~GgG~~lal~cD--~~ia~~~a~f~~pe~~~G~~--~~~~~------~-------~~l~~~vG~~--~A~~lll~g~~~~ 166 (256)
T TIGR03210 106 IGGGNVLVTICD--LTIASEKAQFGQVGPKVGSV--DPGYG------T-------ALLARVVGEK--KAREIWYLCRRYT 166 (256)
T ss_pred ehhhHHHHHhCC--EEEEeCCCEEeccccccccc--CCccH------H-------HHHHHHhCHH--HHHHHHHhCCCcC
Confidence 999999999999 68999999887643332211 00000 0 0122233332 2233333356799
Q ss_pred HHHHHHcCCceeecCCC
Q 020205 245 AWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 245 a~EAve~GLID~I~~~~ 261 (329)
++||+++||||+|...+
T Consensus 167 a~eA~~~Glv~~vv~~~ 183 (256)
T TIGR03210 167 AQEALAMGLVNAVVPHD 183 (256)
T ss_pred HHHHHHcCCceeeeCHH
Confidence 99999999999998753
No 52
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=3.1e-06 Score=79.51 Aligned_cols=139 Identities=16% Similarity=0.066 Sum_probs=90.2
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCchhH---------------HHHHHHHHHhcCCCeEEEEccc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN-----SPGGSVTA---------------GMGIYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN-----SPGGsV~a---------------g~aIyd~Ir~~~~pV~t~v~G~ 163 (329)
++..+...+...+..++.++..+.|+|.=. |.|+++.. ...++..|..+++||++.|.|.
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 105 (258)
T PRK09076 26 WTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGY 105 (258)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 777888888888888776555554444221 33455432 1234566778899999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcee
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFM 243 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~l 243 (329)
|..+|.-++++|| -|++.++++|.+-....|.. -+.... ..+.+..|... ..+++=....|
T Consensus 106 a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~iG~~~--a~~l~l~g~~~ 166 (258)
T PRK09076 106 AMGGGLECALACD--IRIAEEQAQMALPEASVGLL---PCAGGT------------QNLPWLVGEGW--AKRMILCGERV 166 (258)
T ss_pred EecHHHHHHHhCC--EEEecCCCEeeCcccccCCC---CCccHH------------HHHHHHhCHHH--HHHHHHcCCcC
Confidence 9999999999999 68999999887644332221 111000 01222233222 22333335678
Q ss_pred cHHHHHHcCCceeecCCC
Q 020205 244 DAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 244 ta~EAve~GLID~I~~~~ 261 (329)
+++||+++||||+|+..+
T Consensus 167 ~a~eA~~~Glv~~vv~~~ 184 (258)
T PRK09076 167 DAATALRIGLVEEVVEKG 184 (258)
T ss_pred CHHHHHHCCCCceecCch
Confidence 999999999999999754
No 53
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.52 E-value=1.9e-06 Score=80.93 Aligned_cols=137 Identities=17% Similarity=0.155 Sum_probs=90.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC-------CchhH---------------HHHHHHHHHhcCCCeEEEEc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFINSPG-------GSVTA---------------GMGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPG-------GsV~a---------------g~aIyd~Ir~~~~pV~t~v~ 161 (329)
++..+...+.+.+..++.++..+.|+ |.+.| +++.+ ...++..|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vv--l~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDDNVYAVI--LTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEE--EEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 67778888888888776554444444 33433 44321 12456678888999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|.-|+++|| .|++.+++.|.+.....|.. -++... ..+.+..|.. ...+++-...
T Consensus 106 G~a~GgG~~lal~cD--~~va~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vG~~--~a~~l~l~g~ 166 (260)
T PRK05809 106 GFALGGGCELSMACD--IRIASEKAKFGQPEVGLGIT---PGFGGT------------QRLARIVGPG--KAKELIYTGD 166 (260)
T ss_pred CeeecHHHHHHHhCC--EEEeeCCCEEeCcccccCCC---CCccHH------------HHHHHHhCHH--HHHHHHHhCC
Confidence 999999999999999 68999999987654433321 111100 0122223322 2233333356
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
.++++||+++||||+|...+
T Consensus 167 ~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK05809 167 MINAEEALRIGLVNKVVEPE 186 (260)
T ss_pred CCCHHHHHHcCCCCcccChH
Confidence 78999999999999998753
No 54
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=2.5e-06 Score=80.61 Aligned_cols=139 Identities=17% Similarity=0.079 Sum_probs=90.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH-------------------------HHHHHHHHhcCC
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG-------------------------MGIYDAMKLCKA 154 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag-------------------------~aIyd~Ir~~~~ 154 (329)
++..+.+.+.+.|..++.++..+.|+|.=+ |-|+++.+. ..+++.|..+++
T Consensus 30 l~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 109 (272)
T PRK06210 30 WTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRK 109 (272)
T ss_pred CCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhCCC
Confidence 788888888888888775544444444311 234454321 112456778899
Q ss_pred CeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 020205 155 DVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIE 234 (329)
Q Consensus 155 pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~ 234 (329)
||++.|.|.|..+|.-|+++|| .|++.+++.|.+.....|.. -++.... .+.+..| .....
T Consensus 110 PvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~Gl~---p~~g~~~------------~l~~~ig--~~~a~ 170 (272)
T PRK06210 110 PVIAAINGACAGIGLTHALMCD--VRFAADGAKFTTAFARRGLI---AEHGISW------------ILPRLVG--HANAL 170 (272)
T ss_pred CEEEEECCeeehHHHHHHHhCC--EEEEeCCCEEechHHhcCCC---CCCchhh------------hhHhhhC--HHHHH
Confidence 9999999999999999999999 68999999998765543321 1110000 0111122 22334
Q ss_pred hhhcCCceecHHHHHHcCCceeecCCC
Q 020205 235 LDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 235 ~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
+++=.+..++++||+++||||+|...+
T Consensus 171 ~l~ltg~~~~a~eA~~~Glv~~vv~~~ 197 (272)
T PRK06210 171 DLLLSARTFYAEEALRLGLVNRVVPPD 197 (272)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCHH
Confidence 444445678999999999999998653
No 55
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=3.7e-06 Score=79.04 Aligned_cols=137 Identities=14% Similarity=0.114 Sum_probs=88.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhH---------------HHHHHHHHHhcCCCeEEEEcccc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTA---------------GMGIYDAMKLCKADVSTICLGLA 164 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~a---------------g~aIyd~Ir~~~~pV~t~v~G~A 164 (329)
++..+...+.+.|..++ +..+.|+|.=+ |-|+++.+ ...+++.|..+++||++.|.|.|
T Consensus 26 l~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 103 (255)
T PRK08150 26 LNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAV 103 (255)
T ss_pred CCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 67778888888887765 33444444322 33455532 12345667788999999999999
Q ss_pred chHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceec
Q 020205 165 ASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMD 244 (329)
Q Consensus 165 ASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lt 244 (329)
..+|.-++++|| .|++.+++.|++-....|. .-+.... ..+.+..|.. ...+++=....|+
T Consensus 104 ~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl---~p~~g~~------------~~l~~~iG~~--~a~~l~ltg~~~~ 164 (255)
T PRK08150 104 VGGGLELASAAH--IRVADESTYFALPEGQRGI---FVGGGGS------------VRVPRLIGVA--RMTDMMLTGRVYD 164 (255)
T ss_pred EcHHHHHHHhCC--EEEEeCCCEEeccccccCC---CCCccHH------------HHHHHHhCHH--HHHHHHHcCCcCC
Confidence 999999999999 6899999988764333221 1111000 0112223322 2233333356789
Q ss_pred HHHHHHcCCceeecCCC
Q 020205 245 AWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 245 a~EAve~GLID~I~~~~ 261 (329)
++||+++||||+|...+
T Consensus 165 a~eA~~~Glv~~vv~~~ 181 (255)
T PRK08150 165 AQEGERLGLAQYLVPAG 181 (255)
T ss_pred HHHHHHcCCccEeeCch
Confidence 99999999999998854
No 56
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.51 E-value=2e-06 Score=82.54 Aligned_cols=140 Identities=21% Similarity=0.101 Sum_probs=91.6
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH--------------------------------HHHH
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG--------------------------------MGIY 146 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag--------------------------------~aIy 146 (329)
.++..+...+...|..++.++..+.|+|.=+ |.|+++.+. ..++
T Consensus 27 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (296)
T PRK08260 27 AFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVT 106 (296)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence 3788888888888888776544444444211 344554321 1245
Q ss_pred HHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHc
Q 020205 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRAT 226 (329)
Q Consensus 147 d~Ir~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~t 226 (329)
..|..+++||++.|.|.|..+|.-|+++|| -|++.++++|.+.....|.. -++.. . ..+.+..
T Consensus 107 ~~l~~~pkPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~-----~-------~~l~r~v 169 (296)
T PRK08260 107 LRIFDSLKPVIAAVNGPAVGVGATMTLAMD--IRLASTAARFGFVFGRRGIV---PEAAS-----S-------WFLPRLV 169 (296)
T ss_pred HHHHhCCCCEEEEECCeeehHhHHHHHhCC--EEEeeCCCEEecchhhcCcC---CCcch-----h-------hhHHHhh
Confidence 567788999999999999999999999999 68999999988765433321 11100 0 0011222
Q ss_pred CCCHHHHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 227 GKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 227 G~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
|. ....+++-....++++||+++||||+|++.+
T Consensus 170 G~--~~A~~llltg~~~~a~eA~~~GLv~~vv~~~ 202 (296)
T PRK08260 170 GL--QTALEWVYSGRVFDAQEALDGGLVRSVHPPD 202 (296)
T ss_pred CH--HHHHHHHHcCCccCHHHHHHCCCceeecCHH
Confidence 32 2233444445679999999999999998753
No 57
>PLN02888 enoyl-CoA hydratase
Probab=98.51 E-value=3.3e-06 Score=79.87 Aligned_cols=139 Identities=19% Similarity=0.151 Sum_probs=90.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH------------HHHHHHHHhcCCCeEEEEccccchH
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG------------MGIYDAMKLCKADVSTICLGLAASM 167 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag------------~aIyd~Ir~~~~pV~t~v~G~AASa 167 (329)
++..+...+...|..++.++..+.|+|.= =|-|+++.+. ..++..|..+++||++.+.|.|..+
T Consensus 34 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~Gg 113 (265)
T PLN02888 34 LTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITA 113 (265)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeeech
Confidence 77888888888888887655555555431 1334555321 2344567788999999999999999
Q ss_pred HHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHH
Q 020205 168 GAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWE 247 (329)
Q Consensus 168 as~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~E 247 (329)
|..|+++|| .|++.+++.|.+-....|. .-++.. ...+.+..|.. ...+++-....|+++|
T Consensus 114 G~~lal~cD--~ria~~~a~f~~pe~~~Gl---~p~~g~------------~~~l~~~vG~~--~a~~l~ltg~~~~a~e 174 (265)
T PLN02888 114 GFEIALACD--ILVASRGAKFIDTHAKFGI---FPSWGL------------SQKLSRIIGAN--RAREVSLTAMPLTAET 174 (265)
T ss_pred HHHHHHhCC--EEEecCCCEecCccccccC---CCCccH------------hhHHHHHhCHH--HHHHHHHhCCccCHHH
Confidence 999999999 6899999888653332221 111100 01122233322 2233333346789999
Q ss_pred HHHcCCceeecCCC
Q 020205 248 AKEYGLVDAVIDDG 261 (329)
Q Consensus 248 Ave~GLID~I~~~~ 261 (329)
|+++||||+|.+.+
T Consensus 175 A~~~Glv~~vv~~~ 188 (265)
T PLN02888 175 AERWGLVNHVVEES 188 (265)
T ss_pred HHHcCCccEeeChH
Confidence 99999999998754
No 58
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.50 E-value=2.5e-06 Score=79.89 Aligned_cols=140 Identities=15% Similarity=0.040 Sum_probs=93.8
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH------------HHHHHHHHhcCCCeEEEEccccch
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG------------MGIYDAMKLCKADVSTICLGLAAS 166 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag------------~aIyd~Ir~~~~pV~t~v~G~AAS 166 (329)
.++..+.+.+.+.+..++.++..+.|+|.=+ |.|+++.+. ..++..|..++.||++.+.|.|..
T Consensus 28 al~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 107 (249)
T PRK07110 28 AFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIG 107 (249)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCceec
Confidence 3677888888888887776554555554311 445664321 256777889999999999999999
Q ss_pred HHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHH
Q 020205 167 MGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAW 246 (329)
Q Consensus 167 aas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~ 246 (329)
+|..++++|| .|++.+++.|.+.....|.. -++.- ...+.++.|. ....+++-...-|+++
T Consensus 108 gG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~~g~--~~a~~llltg~~~~a~ 168 (249)
T PRK07110 108 GGLVLGLYAD--IVVLSRESVYTANFMKYGFT---PGMGA------------TAILPEKLGL--ALGQEMLLTARYYRGA 168 (249)
T ss_pred hHHHHHHhCC--EEEEeCCCEecCchhccCCC---CCchH------------HHHHHHHhCH--HHHHHHHHcCCccCHH
Confidence 9999999999 68999999886544332211 11110 0012223333 2334444446689999
Q ss_pred HHHHcCCceeecCCC
Q 020205 247 EAKEYGLVDAVIDDG 261 (329)
Q Consensus 247 EAve~GLID~I~~~~ 261 (329)
||++.||||+|.+.+
T Consensus 169 eA~~~Glv~~vv~~~ 183 (249)
T PRK07110 169 ELKKRGVPFPVLPRA 183 (249)
T ss_pred HHHHcCCCeEEeChH
Confidence 999999999998743
No 59
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.50 E-value=2.8e-06 Score=80.10 Aligned_cols=139 Identities=19% Similarity=0.137 Sum_probs=89.8
Q ss_pred cChhHHHHHHHHHHhhhhcCC-CCCeEEEEe----CCCCchhH--------------H-------HHHHHHHHhcCCCeE
Q 020205 104 VDDLTADFIISQLLFLDAEDS-KKDIRLFIN----SPGGSVTA--------------G-------MGIYDAMKLCKADVS 157 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~-~k~I~L~IN----SPGGsV~a--------------g-------~aIyd~Ir~~~~pV~ 157 (329)
++..+...+...+..++.+++ .+.|+|.=. |.|+++.+ + ..++..|..+++||+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI 107 (266)
T PRK05981 28 VSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIV 107 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 677888888888887765433 444444321 34455432 1 124566778899999
Q ss_pred EEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhh
Q 020205 158 TICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDT 237 (329)
Q Consensus 158 t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~ 237 (329)
+.|.|.|..+|.-++++|| .|++.+++.|.+..+..|.. -+..- -. .+.+..|. ....+++
T Consensus 108 aav~G~a~GgG~~lalacD--~~ia~~~a~f~~~e~~lG~~---p~~g~--~~----------~l~~~vg~--~~a~~l~ 168 (266)
T PRK05981 108 TAVNGPAAGVGMSFALMGD--LILCARSAYFLQAFRRIGLV---PDGGS--TW----------LLPRLVGK--ARAMELS 168 (266)
T ss_pred EEECCEeehHHHHHHHhCC--EEEecCCCEEechHhhcCCC---CCccH--HH----------HHHHHhHH--HHHHHHH
Confidence 9999999999999999999 68999999987655543321 11100 00 01111121 1223333
Q ss_pred cCCceecHHHHHHcCCceeecCCC
Q 020205 238 DRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 238 d~d~~lta~EAve~GLID~I~~~~ 261 (329)
-....|+++||+++||||+|.+.+
T Consensus 169 l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK05981 169 LLGEKLPAETALQWGLVNRVVDDA 192 (266)
T ss_pred HhCCCcCHHHHHHcCCceEeeCHh
Confidence 335679999999999999998754
No 60
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=1.9e-06 Score=80.96 Aligned_cols=139 Identities=19% Similarity=0.117 Sum_probs=91.0
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCchhHH----------------------HHHHHHHHhcCCCe
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLF----INSPGGSVTAG----------------------MGIYDAMKLCKADV 156 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~----INSPGGsV~ag----------------------~aIyd~Ir~~~~pV 156 (329)
.++..+.+.+...|..++.++..+.|+|. .=|.|+++... ..++..|+.+++||
T Consensus 26 al~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpv 105 (262)
T PRK07509 26 ALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPV 105 (262)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCCE
Confidence 37888888898888888765545544442 11445554321 11234467889999
Q ss_pred EEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Q 020205 157 STICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELD 236 (329)
Q Consensus 157 ~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l 236 (329)
++.|.|.|..+|.-|+++|| .|++.+++.|.+.....|.. -++.- ...+.+..|. ....++
T Consensus 106 Iaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~~g~--~~a~~l 166 (262)
T PRK07509 106 IAALEGVCFGGGLQIALGAD--IRIAAPDTKLSIMEAKWGLV---PDMAG------------TVSLRGLVRK--DVAREL 166 (262)
T ss_pred EEEECCeeecchHHHHHhCC--EEEecCCCEeecchhccCCC---CCchH------------HHHHHHHhCH--HHHHHH
Confidence 99999999999999999999 68999999888765443321 11100 0011222232 223444
Q ss_pred hcCCceecHHHHHHcCCceeecCC
Q 020205 237 TDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 237 ~d~d~~lta~EAve~GLID~I~~~ 260 (329)
+-....|+++||+++||||+|.++
T Consensus 167 ~ltg~~~~a~eA~~~Glv~~vv~~ 190 (262)
T PRK07509 167 TYTARVFSAEEALELGLVTHVSDD 190 (262)
T ss_pred HHcCCCcCHHHHHHcCChhhhhch
Confidence 434568999999999999999853
No 61
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=3.4e-06 Score=78.80 Aligned_cols=137 Identities=16% Similarity=0.072 Sum_probs=89.1
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCchhH----------HHHHHHHHHhcCCCeEEEEccccchHH
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLF----INSPGGSVTA----------GMGIYDAMKLCKADVSTICLGLAASMG 168 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~----INSPGGsV~a----------g~aIyd~Ir~~~~pV~t~v~G~AASaa 168 (329)
.++..+...+.+.+..++. +..+.|+|. .=|.|+++.+ ...++..|..+++||++.|.|.|..+|
T Consensus 23 al~~~~~~~l~~al~~~~~-~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG 101 (243)
T PRK07854 23 ALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAG 101 (243)
T ss_pred CCCHHHHHHHHHHHHHHhc-CCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccH
Confidence 4788888888888887763 334444432 1144555432 134566777889999999999999999
Q ss_pred HHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHH
Q 020205 169 AFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEA 248 (329)
Q Consensus 169 s~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EA 248 (329)
..++++|| -|++.++++|.+-....| -.-+.. ....+.+..|. ....+++=....|+++||
T Consensus 102 ~~lal~cD--~~ia~~~a~f~~pe~~~G---~~p~~g------------~~~~l~~~~G~--~~a~~l~ltg~~~~a~eA 162 (243)
T PRK07854 102 LQLAMACD--LRVVAPEAYFQFPVAKYG---IALDNW------------TIRRLSSLVGG--GRARAMLLGAEKLTAEQA 162 (243)
T ss_pred HHHHHhCC--EEEEcCCCEEeccccccc---cCCCcc------------HHHHHHHHhCH--HHHHHHHHcCCCcCHHHH
Confidence 99999999 689999998874332222 111110 00112333332 223344434568999999
Q ss_pred HHcCCceeecC
Q 020205 249 KEYGLVDAVID 259 (329)
Q Consensus 249 ve~GLID~I~~ 259 (329)
++.||||+|.+
T Consensus 163 ~~~Glv~~v~~ 173 (243)
T PRK07854 163 LATGMANRIGT 173 (243)
T ss_pred HHCCCcccccC
Confidence 99999999954
No 62
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.49 E-value=2.4e-06 Score=80.42 Aligned_cols=138 Identities=21% Similarity=0.140 Sum_probs=89.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCchhH----------------HHHHHHHHHhcCCCeEEEEcc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI-----NSPGGSVTA----------------GMGIYDAMKLCKADVSTICLG 162 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-----NSPGGsV~a----------------g~aIyd~Ir~~~~pV~t~v~G 162 (329)
++..+.+.+.+.+..++.++..+.|+|.= =|-|+++.. ...+++.|..+++||++.+.|
T Consensus 27 l~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 106 (259)
T TIGR01929 27 FRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNG 106 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 67778888888888777554444444421 133455421 113456778889999999999
Q ss_pred ccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCC-CChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 163 LAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAG-GKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 163 ~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~-G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
.|..+|.-|+++|| -|++.+++.|++-....|.. +-.. . . .+.+..|. ....+++-...
T Consensus 107 ~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~G~~p~~~~-~----~-----------~l~~~vG~--~~a~~l~l~g~ 166 (259)
T TIGR01929 107 YAIGGGHVLHVVCD--LTIAAENARFGQTGPKVGSFDGGYG-S----S-----------YLARIVGQ--KKAREIWFLCR 166 (259)
T ss_pred EEehHHHHHHHhCC--EEEecCCCEecCcccccccCCCccH-H----H-----------HHHHHhHH--HHHHHHHHhCC
Confidence 99999999999999 68999999988755443321 1000 0 0 01112221 12233343355
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
.++++||+++||||+|+..+
T Consensus 167 ~~~a~eA~~~Glv~~vv~~~ 186 (259)
T TIGR01929 167 QYDAEQALDMGLVNTVVPLA 186 (259)
T ss_pred ccCHHHHHHcCCcccccCHH
Confidence 79999999999999998753
No 63
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=3.4e-06 Score=78.97 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=92.1
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhH----------------HHHHHHHHHhcCCCeEEEEcc
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTA----------------GMGIYDAMKLCKADVSTICLG 162 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~a----------------g~aIyd~Ir~~~~pV~t~v~G 162 (329)
.++..+.+.+.+.+..++.++..+.|+|.= =|.|+++.+ ...++..|..+++||++.+.|
T Consensus 24 al~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G 103 (257)
T PRK07658 24 ALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHG 103 (257)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 367788888888888777655555555431 144566532 123556677889999999999
Q ss_pred ccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCce
Q 020205 163 LAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNF 242 (329)
Q Consensus 163 ~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~ 242 (329)
.|..+|.-++++|| -|++.+++.|.+-....|.. -++.-. ..+.+..|.. ...+++-....
T Consensus 104 ~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vG~~--~a~~l~l~g~~ 164 (257)
T PRK07658 104 AALGGGLELAMSCH--IRFATESAKLGLPELNLGLI---PGFAGT------------QRLPRYVGKA--KALEMMLTSEP 164 (257)
T ss_pred eeeeHHHHHHHhCC--EEEecCCCcccCcccccCCC---CCCcHH------------HHHHHHhCHH--HHHHHHHcCCC
Confidence 99999999999999 68999998887544332221 111100 0112223332 22344434567
Q ss_pred ecHHHHHHcCCceeecCCC
Q 020205 243 MDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 243 lta~EAve~GLID~I~~~~ 261 (329)
++++||+++||||+|.+.+
T Consensus 165 ~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK07658 165 ITGAEALKWGLVNGVFPEE 183 (257)
T ss_pred cCHHHHHHcCCcCeecChh
Confidence 9999999999999998753
No 64
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.48 E-value=4.2e-06 Score=79.17 Aligned_cols=138 Identities=20% Similarity=0.164 Sum_probs=90.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH----------------HHHHHHHHhcCCCeEEEEccc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG----------------MGIYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag----------------~aIyd~Ir~~~~pV~t~v~G~ 163 (329)
++..+...+...+..++.++..+.|+|.= =|-|+++.+. ..++..|..+++||++.|.|.
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 114 (266)
T PRK08139 35 LSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGI 114 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECce
Confidence 67778888888888777544444444321 1233444210 124456778899999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcee
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFM 243 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~l 243 (329)
|..+|.-++++|| -|++.++++|.+-....|......- . .+.+..|. ....+++-....+
T Consensus 115 a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p~~~~----~------------~l~r~vG~--~~A~~l~ltg~~~ 174 (266)
T PRK08139 115 ATAAGCQLVASCD--LAVAADTARFAVPGVNIGLFCSTPM----V------------ALSRNVPR--KQAMEMLLTGEFI 174 (266)
T ss_pred eeHHHHHHHHhCC--EEEEeCCCEEeCcccCcCCCCCccH----H------------HHHHHhCH--HHHHHHHHcCCcc
Confidence 9999999999999 6899999988765444333211100 0 01222332 2233444345678
Q ss_pred cHHHHHHcCCceeecCCC
Q 020205 244 DAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 244 ta~EAve~GLID~I~~~~ 261 (329)
+++||++.||||+|...+
T Consensus 175 ~a~eA~~~GLv~~vv~~~ 192 (266)
T PRK08139 175 DAATAREWGLVNRVVPAD 192 (266)
T ss_pred CHHHHHHcCCccEeeChh
Confidence 999999999999999754
No 65
>PLN02921 naphthoate synthase
Probab=98.48 E-value=4.1e-06 Score=81.93 Aligned_cols=139 Identities=19% Similarity=0.078 Sum_probs=92.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCchhHH----------------HHHHHHHHhcCCCeEEEEcc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI-----NSPGGSVTAG----------------MGIYDAMKLCKADVSTICLG 162 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-----NSPGGsV~ag----------------~aIyd~Ir~~~~pV~t~v~G 162 (329)
++..+...+.+.+..++.++..+.|+|.= =|.||++... ..++..|+.+++||++.|.|
T Consensus 91 l~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG 170 (327)
T PLN02921 91 FRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAG 170 (327)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 78888888998888887654444444321 1345654321 12455677889999999999
Q ss_pred ccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCce
Q 020205 163 LAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNF 242 (329)
Q Consensus 163 ~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~ 242 (329)
.|..+|..|+++|| -|++.+++.|++..+..|.. ....- . ..+.+..|. ....+++-....
T Consensus 171 ~a~GGG~~LalacD--~riA~~~A~f~~pe~~~Gl~---p~~gg-----~-------~~L~rliG~--~~A~ellltG~~ 231 (327)
T PLN02921 171 YAVGGGHILHMVCD--LTIAADNAVFGQTGPKVGSF---DAGYG-----S-------SIMARLVGQ--KKAREMWFLARF 231 (327)
T ss_pred EEecHHHHHHHhCC--EEEEeCCCEEeCcccccCCC---CCccH-----H-------HHHHHHhCH--HHHHHHHHcCCc
Confidence 99999999999999 68999999998765543321 00000 0 011222232 223344444568
Q ss_pred ecHHHHHHcCCceeecCCC
Q 020205 243 MDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 243 lta~EAve~GLID~I~~~~ 261 (329)
|+++||+++||||+|...+
T Consensus 232 ~~A~eA~~~GLV~~vv~~~ 250 (327)
T PLN02921 232 YTASEALKMGLVNTVVPLD 250 (327)
T ss_pred CCHHHHHHCCCceEEeCHH
Confidence 9999999999999998753
No 66
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.48 E-value=2.6e-06 Score=80.25 Aligned_cols=138 Identities=14% Similarity=0.048 Sum_probs=90.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH------------------HHHHHHHHhcCCCeEEEEc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG------------------MGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag------------------~aIyd~Ir~~~~pV~t~v~ 161 (329)
++..+...+...|..++.++..+.|+|.=+ |-|+++.+- ..+++.|+.+++||++.|.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 108 (262)
T PRK07468 29 LSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQ 108 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 677788888888887765444454554321 334554320 1246678889999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|.-|+++|| -|++.+++.|.+-....|.. -+..- . .+.++.|. ....+++-...
T Consensus 109 G~a~GgG~~lala~D--~ria~~~a~f~~pe~~~Gl~---p~~g~--~-----------~~~~~vG~--~~a~~lll~g~ 168 (262)
T PRK07468 109 GQAFGGGVGLISVCD--VAIAVSGARFGLTETRLGLI---PATIS--P-----------YVVARMGE--ANARRVFMSAR 168 (262)
T ss_pred CEEEhHHHHHHHhCC--EEEEeCCCEEeCchhccCCC---cccch--h-----------hHHhhccH--HHHHHHHHhCC
Confidence 999999999999999 68999999887644333321 11100 0 01112222 23344444467
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
-++++||+++||||+|...+
T Consensus 169 ~~~a~eA~~~Glv~~v~~~~ 188 (262)
T PRK07468 169 LFDAEEAVRLGLLSRVVPAE 188 (262)
T ss_pred ccCHHHHHHcCCcceecCHH
Confidence 89999999999999998743
No 67
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.48 E-value=2.8e-06 Score=80.64 Aligned_cols=140 Identities=19% Similarity=0.093 Sum_probs=89.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH----------------------HHHHHHHHhcCCCeE
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG----------------------MGIYDAMKLCKADVS 157 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag----------------------~aIyd~Ir~~~~pV~ 157 (329)
++..+...+.+.+..++.++..+.|+|.= =|.|+++.+. ..++..|+.+++||+
T Consensus 34 l~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 113 (276)
T PRK05864 34 MAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVI 113 (276)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 77778888888888877655445455431 1445555321 123456778899999
Q ss_pred EEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhh
Q 020205 158 TICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDT 237 (329)
Q Consensus 158 t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~ 237 (329)
+.|.|.|..+|.-++++|| -|++.+++.|.+-....|... .++.. . ..+.+..|.. ...+++
T Consensus 114 aav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~~Gl~p--~~~g~-----~-------~~l~~~vG~~--~A~~l~ 175 (276)
T PRK05864 114 AAVNGPAIGGGLCLALAAD--IRVASSSAYFRAAGINNGLTA--SELGL-----S-------YLLPRAIGSS--RAFEIM 175 (276)
T ss_pred EEECCEeehhHHHHHHhCC--EEEeeCCCEecCcccccCCCC--CCcch-----h-------eehHhhhCHH--HHHHHH
Confidence 9999999999999999999 689999998875433322110 01100 0 0122223322 233333
Q ss_pred cCCceecHHHHHHcCCceeecCCC
Q 020205 238 DRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 238 d~d~~lta~EAve~GLID~I~~~~ 261 (329)
-....++++||+++||||+|...+
T Consensus 176 l~g~~~~a~eA~~~Glv~~vv~~~ 199 (276)
T PRK05864 176 LTGRDVDAEEAERIGLVSRQVPDE 199 (276)
T ss_pred HcCCccCHHHHHHcCCcceeeCHH
Confidence 334568999999999999998754
No 68
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.48 E-value=2.6e-06 Score=79.71 Aligned_cols=140 Identities=15% Similarity=0.101 Sum_probs=91.5
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCchhH--------------HHHHHHHHHhcCCCeEEEEcccc
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLF----INSPGGSVTA--------------GMGIYDAMKLCKADVSTICLGLA 164 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~----INSPGGsV~a--------------g~aIyd~Ir~~~~pV~t~v~G~A 164 (329)
.++..+.+.+...+..++.++..+.|+|. .=|.|+++.+ ...++..|+.+++||++.|.|.|
T Consensus 29 al~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 108 (251)
T PRK06023 29 AITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLA 108 (251)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCce
Confidence 37888888888888888765444555442 1144455431 12355677888999999999999
Q ss_pred chHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceec
Q 020205 165 ASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMD 244 (329)
Q Consensus 165 ASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lt 244 (329)
..+|.-|+++|| .|++.++++|.+.....|.. -+.... ..+.+..|. ....+++-....++
T Consensus 109 ~GgG~~la~acD--~ria~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~~g~--~~a~~l~l~g~~~~ 169 (251)
T PRK06023 109 IGIGTTIHLHCD--LTFASPRSLFRTPFVDLALV---PEAGSS------------LLAPRLMGH--QRAFALLALGEGFS 169 (251)
T ss_pred ecHHHHHHHhCC--EEEEeCCCEecCcccccCCC---CCchHH------------HHHHHHHhH--HHHHHHHHhCCCCC
Confidence 999999999999 68999999987654433321 111000 001111221 22233333356799
Q ss_pred HHHHHHcCCceeecCCC
Q 020205 245 AWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 245 a~EAve~GLID~I~~~~ 261 (329)
++||+++||||+|.+.+
T Consensus 170 a~eA~~~Glv~~vv~~~ 186 (251)
T PRK06023 170 AEAAQEAGLIWKIVDEE 186 (251)
T ss_pred HHHHHHcCCcceeeCHH
Confidence 99999999999998743
No 69
>PLN02600 enoyl-CoA hydratase
Probab=98.47 E-value=4.8e-06 Score=78.06 Aligned_cols=139 Identities=16% Similarity=0.120 Sum_probs=90.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCchhHH---------------HHHHHHHHhcCCCeEEEEccc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI-----NSPGGSVTAG---------------MGIYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-----NSPGGsV~ag---------------~aIyd~Ir~~~~pV~t~v~G~ 163 (329)
++..+.+.+.+.+..++.++..+.|+|.= =|.|+++.+- ..++..|..+++||++.|.|.
T Consensus 19 l~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 98 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGA 98 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence 77888888888888887655555555431 1345555321 123455677899999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcee
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFM 243 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~l 243 (329)
|..+|.-|+++|| -|++.+++.|++-....|. ..+... . ..+.+..|. ....+++-....|
T Consensus 99 a~GgG~~lala~D--~~ia~~~a~f~~pe~~~Gl---~p~~g~----~--------~~l~~~~G~--~~a~~l~ltg~~~ 159 (251)
T PLN02600 99 ALGGGLELALSCD--LRICGEEAVFGLPETGLAI---IPGAGG----T--------QRLPRLVGR--SRAKELIFTGRRI 159 (251)
T ss_pred ecchhHHHHHhCC--EEEeeCCCEEeCcccccCc---CCCchH----H--------HHHHHHhCH--HHHHHHHHhCCcc
Confidence 9999999999999 6899999988763332221 111110 0 011222222 2223333335679
Q ss_pred cHHHHHHcCCceeecCCC
Q 020205 244 DAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 244 ta~EAve~GLID~I~~~~ 261 (329)
+++||+++||||+|+..+
T Consensus 160 ~a~eA~~~Glv~~vv~~~ 177 (251)
T PLN02600 160 GAREAASMGLVNYCVPAG 177 (251)
T ss_pred CHHHHHHcCCCcEeeChh
Confidence 999999999999998754
No 70
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.47 E-value=3.9e-06 Score=79.64 Aligned_cols=138 Identities=20% Similarity=0.122 Sum_probs=89.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH--------------------------HHHHHHHHhcC
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG--------------------------MGIYDAMKLCK 153 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag--------------------------~aIyd~Ir~~~ 153 (329)
++..+...+.+.|..++.++..+.|+|.= =|-|+++.+. ..+++.|+.++
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (275)
T PLN02664 32 LSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCR 111 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 78888888888888887655444444321 1334554321 12445677889
Q ss_pred CCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 020205 154 ADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQI 233 (329)
Q Consensus 154 ~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I 233 (329)
+||++.+.|.|..+|.-|+++|| -|++.+++.|.+-....|.. -++... ..+.+..|.. ..
T Consensus 112 kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vG~~--~A 172 (275)
T PLN02664 112 KPVIAAIHGACIGGGVDIVTACD--IRYCSEDAFFSVKEVDLAIT---ADLGTL------------QRLPSIVGYG--NA 172 (275)
T ss_pred CCEEEEECCccccchHHHHHhCC--EEEecCCCEeccHHHhhCCC---CCccHH------------HHHHHHhCHH--HH
Confidence 99999999999999999999999 68999999987644332221 111100 0111222322 22
Q ss_pred HhhhcCCceecHHHHHHcCCceeecCC
Q 020205 234 ELDTDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 234 ~~l~d~d~~lta~EAve~GLID~I~~~ 260 (329)
.+++=....|+++||++.||||+|.++
T Consensus 173 ~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 173 MELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred HHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 333333568899999999999999874
No 71
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.47 E-value=4e-06 Score=79.60 Aligned_cols=140 Identities=19% Similarity=0.106 Sum_probs=92.1
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCchhHH----------------HHHHHHHHhcCCCeEEEEc
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFI-----NSPGGSVTAG----------------MGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-----NSPGGsV~ag----------------~aIyd~Ir~~~~pV~t~v~ 161 (329)
.++..+...+.+.|..++.++..+.|+|.= =|.|+++.+. ..+++.|..+++||++.+.
T Consensus 36 al~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 115 (273)
T PRK07396 36 AFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVA 115 (273)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEEC
Confidence 378888888988888887655555555532 1345554310 1245567788999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|.-|+++|| -|++.+++.|.+-.+..|.. ..... . ..+.+..|. ....+++-...
T Consensus 116 G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~~~----~--------~~l~~~vG~--~~a~~l~ltg~ 176 (273)
T PRK07396 116 GYAIGGGHVLHLVCD--LTIAADNAIFGQTGPKVGSF---DGGYG----A--------SYLARIVGQ--KKAREIWFLCR 176 (273)
T ss_pred CEEehHHHHHHHhCC--EEEeeCCcEEeccccccccc---CCchH----H--------HHHHHHhhH--HHHHHHHHhCC
Confidence 999999999999999 68999999987644432211 01000 0 011222232 22333443456
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
.|+++||+++||||+|+..+
T Consensus 177 ~~~A~eA~~~GLv~~vv~~~ 196 (273)
T PRK07396 177 QYDAQEALDMGLVNTVVPLA 196 (273)
T ss_pred CcCHHHHHHcCCcCeecCHH
Confidence 89999999999999998753
No 72
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.47 E-value=2.4e-06 Score=81.45 Aligned_cols=141 Identities=11% Similarity=0.081 Sum_probs=93.9
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEE------eCCCCchhHH-----------------HHHHHHHHhcCCCeEEE
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFI------NSPGGSVTAG-----------------MGIYDAMKLCKADVSTI 159 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I------NSPGGsV~ag-----------------~aIyd~Ir~~~~pV~t~ 159 (329)
.++..+...+...|..++.++..+.|+|.= =|.|+++.+- ..++..|+.++.||++.
T Consensus 34 al~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 113 (278)
T PLN03214 34 SMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCA 113 (278)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 477888888888888887655555555522 1445554321 11345677889999999
Q ss_pred EccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcC
Q 020205 160 CLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDR 239 (329)
Q Consensus 160 v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~ 239 (329)
|.|.|..+|..++++|| .|++.++++|.+-....|.. ..+.. ....+.+..|. ....+++-.
T Consensus 114 V~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~lGl~--~p~~~------------~~~~l~~~~G~--~~a~~lllt 175 (278)
T PLN03214 114 IRGACPAGGCAVSLCCD--YRLQTTEGTMGLNEVALGIP--VPKFW------------ARLFMGRVIDR--KVAESLLLR 175 (278)
T ss_pred EcCcccchHHHHHHhCC--EEEecCCCEecCcHHHhCCC--CCChh------------HHHHHHHhcCH--HHHHHHHHc
Confidence 99999999999999999 68999999887644433321 01110 00123333443 333444444
Q ss_pred CceecHHHHHHcCCceeecCCC
Q 020205 240 DNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 240 d~~lta~EAve~GLID~I~~~~ 261 (329)
..-|+++||++.||||+|+..+
T Consensus 176 g~~~~a~eA~~~Glv~~vv~~~ 197 (278)
T PLN03214 176 GRLVRPAEAKQLGLIDEVVPAA 197 (278)
T ss_pred CCccCHHHHHHcCCCcEecChH
Confidence 5679999999999999998753
No 73
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.46 E-value=4.6e-06 Score=78.33 Aligned_cols=138 Identities=20% Similarity=0.119 Sum_probs=91.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH------------HHHHHHHHhcCCCeEEEEccccchH
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG------------MGIYDAMKLCKADVSTICLGLAASM 167 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag------------~aIyd~Ir~~~~pV~t~v~G~AASa 167 (329)
++..+...+.+.+..++.++..+.|+|.=+ |-|+++.+. ..++..|..+++||++.|.|.|..+
T Consensus 24 l~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (251)
T TIGR03189 24 VDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGG 103 (251)
T ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeH
Confidence 788888888888888876555554444211 344554321 2345567788999999999999999
Q ss_pred HHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHH
Q 020205 168 GAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWE 247 (329)
Q Consensus 168 as~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~E 247 (329)
|.-|+++|| -|++.++++|.+-....|... .... ..+.+..|.. ...+++=...-|+++|
T Consensus 104 G~~lal~cD--~~ia~~~a~f~~pe~~~Gl~p---~~~~-------------~~l~~~vg~~--~a~~l~ltg~~~~a~e 163 (251)
T TIGR03189 104 GLEVAAAGN--LMFAAPDAKLGQPEIVLGVFA---PAAS-------------CLLPERMGRV--AAEDLLYSGRSIDGAE 163 (251)
T ss_pred HHHHHHhCC--EEEEcCCCEEeCchhhcCCCC---CchH-------------HHHHHHhCHH--HHHHHHHcCCCCCHHH
Confidence 999999999 689999998876443323211 1000 0122333332 2344443345799999
Q ss_pred HHHcCCceeecCCC
Q 020205 248 AKEYGLVDAVIDDG 261 (329)
Q Consensus 248 Ave~GLID~I~~~~ 261 (329)
|+++||||+|.++.
T Consensus 164 A~~~Glv~~v~~~~ 177 (251)
T TIGR03189 164 GARIGLANAVAEDP 177 (251)
T ss_pred HHHCCCcceecCcH
Confidence 99999999998643
No 74
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.46 E-value=3.4e-06 Score=79.82 Aligned_cols=139 Identities=14% Similarity=0.075 Sum_probs=88.2
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH-----------------HHHHHHHHhcCCCeEEEEcc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG-----------------MGIYDAMKLCKADVSTICLG 162 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag-----------------~aIyd~Ir~~~~pV~t~v~G 162 (329)
++..+...+.+.|..++.++..+.|+|.= =|.|+++.+. ..++..|..+++||++.|.|
T Consensus 36 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 115 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHG 115 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 67888888888888887655555555421 1344544311 12344566788999999999
Q ss_pred ccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCce
Q 020205 163 LAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNF 242 (329)
Q Consensus 163 ~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~ 242 (329)
.|..+|..|+++|| .|++.+++.|.+-....|.. -+.... ..+.+..|. ....+++-....
T Consensus 116 ~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vG~--~~a~~l~ltg~~ 176 (268)
T PRK07327 116 PAVGAGLVAALLAD--ISIAAKDARIIDGHTRLGVA---AGDHAA------------IVWPLLCGM--AKAKYYLLLCEP 176 (268)
T ss_pred eeeehhhHHHHhCC--EEEecCCCEEeCcccccCCC---CCcchh------------hHHHHHhCH--HHHHHHHHcCCc
Confidence 99999999999999 68999999887533322221 110000 001111222 122333333567
Q ss_pred ecHHHHHHcCCceeecCCC
Q 020205 243 MDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 243 lta~EAve~GLID~I~~~~ 261 (329)
|+++||+++||||+|...+
T Consensus 177 ~~a~eA~~~Glv~~vv~~~ 195 (268)
T PRK07327 177 VSGEEAERIGLVSLAVDDD 195 (268)
T ss_pred cCHHHHHHcCCcceecCHH
Confidence 9999999999999998643
No 75
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.45 E-value=2.4e-06 Score=80.54 Aligned_cols=139 Identities=22% Similarity=0.128 Sum_probs=87.9
Q ss_pred cCh-hHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH----------------------HHHHHHHHhcCCCe
Q 020205 104 VDD-LTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG----------------------MGIYDAMKLCKADV 156 (329)
Q Consensus 104 Id~-~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag----------------------~aIyd~Ir~~~~pV 156 (329)
++. .+.+.+...+..++.++..+.|+|.=+ |.|+++.+. ..+++.|..+++||
T Consensus 27 l~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpv 106 (266)
T PRK09245 27 LSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPV 106 (266)
T ss_pred CChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCE
Confidence 553 666777777777775544455554311 445554221 12445677889999
Q ss_pred EEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Q 020205 157 STICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELD 236 (329)
Q Consensus 157 ~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l 236 (329)
++.|.|.|..+|.-|+++|| -|++.+++.|.+.....|.. -+.... ..+.+..|.. ...++
T Consensus 107 Iaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G~~---p~~g~~------------~~l~~~vG~~--~a~~l 167 (266)
T PRK09245 107 IAAVNGPAIGAGCDLACMCD--IRIASETARFAESFVKLGLI---PGDGGA------------WLLPRIIGMA--RAAEM 167 (266)
T ss_pred EEEECCEeecHHHHHHHhCC--EEEecCCCEEcccccccCcC---CCcchh------------hhHHHHhhHH--HHHHH
Confidence 99999999999999999999 68999999887654433321 111000 0111122221 22333
Q ss_pred hcCCceecHHHHHHcCCceeecCCC
Q 020205 237 TDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 237 ~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
+-....|+++||+++||||+|...+
T Consensus 168 ~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK09245 168 AFTGDAIDAATALEWGLVSRVVPAD 192 (266)
T ss_pred HHcCCCcCHHHHHHcCCcceecCHH
Confidence 3335689999999999999998754
No 76
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.45 E-value=6.4e-06 Score=77.94 Aligned_cols=139 Identities=17% Similarity=0.029 Sum_probs=91.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCchhHH-----------------HHHHHHHHhcCCCeEEEEc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN-----SPGGSVTAG-----------------MGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN-----SPGGsV~ag-----------------~aIyd~Ir~~~~pV~t~v~ 161 (329)
++..+...+.+.|..++.++..+.|+|.=+ |.|+++... ..+++.|+.+++||++.+.
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~ 114 (269)
T PRK06127 35 MSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIR 114 (269)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 788888889888888876554454443321 224544310 1234557788999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|.-|+++|| .|++.+++.|.+.....|..- +..- . ..+.+..|. ....+++-...
T Consensus 115 G~a~GgG~~LalacD--~~ia~~~a~f~~pe~~~Gl~p---~~g~-----~-------~~l~~~vG~--~~a~~l~ltg~ 175 (269)
T PRK06127 115 GYCIGGGMGIALACD--IRIAAEDSRFGIPAARLGLGY---GYDG-----V-------KNLVDLVGP--SAAKDLFYTAR 175 (269)
T ss_pred CEEecHHHHHHHhCC--EEEeeCCCEeeCchhhhCCCC---CccH-----H-------HHHHHHhCH--HHHHHHHHcCC
Confidence 999999999999999 699999999987655433211 0000 0 011222232 22344444456
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
.++++||+++||||+|++.+
T Consensus 176 ~~~a~eA~~~Glv~~vv~~~ 195 (269)
T PRK06127 176 RFDAAEALRIGLVHRVTAAD 195 (269)
T ss_pred CCCHHHHHHcCCCCEeeCHH
Confidence 79999999999999999743
No 77
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.45 E-value=6.1e-06 Score=77.63 Aligned_cols=139 Identities=16% Similarity=0.032 Sum_probs=89.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCchhHHH----------HH--HHHHHhcCCCeEEEEccccch
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN-----SPGGSVTAGM----------GI--YDAMKLCKADVSTICLGLAAS 166 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN-----SPGGsV~ag~----------aI--yd~Ir~~~~pV~t~v~G~AAS 166 (329)
++..+...+.+.+..++.++..+.|+|.=+ |.|+++.+.. .+ +..+..+++||++.|.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 107 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMG 107 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEec
Confidence 677788888888888776555555554321 3356653211 11 122346789999999999999
Q ss_pred HHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHH
Q 020205 167 MGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAW 246 (329)
Q Consensus 167 aas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~ 246 (329)
+|.-++++|| .|++.+++.|.+.....|.. -+... . ..+.+..|.. ...+++-....++++
T Consensus 108 gG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~vg~~--~a~~lll~g~~~~a~ 168 (259)
T PRK06494 108 GGFELALACD--LIVAAENATFALPEPRVGLA---ALAGG----L--------HRLPRQIGLK--RAMGMILTGRRVTAR 168 (259)
T ss_pred HHHHHHHhCC--EEEEeCCCEEeCcccccCCC---CCchH----H--------HHHHHHcCHH--HHHHHHHcCCcCCHH
Confidence 9999999999 68999999987755433321 11100 0 0122233322 233344345689999
Q ss_pred HHHHcCCceeecCCC
Q 020205 247 EAKEYGLVDAVIDDG 261 (329)
Q Consensus 247 EAve~GLID~I~~~~ 261 (329)
||+++||||+|+..+
T Consensus 169 eA~~~GLv~~vv~~~ 183 (259)
T PRK06494 169 EGLELGFVNEVVPAG 183 (259)
T ss_pred HHHHcCCCcEecCHh
Confidence 999999999998753
No 78
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.44 E-value=4.8e-06 Score=78.32 Aligned_cols=137 Identities=20% Similarity=0.121 Sum_probs=89.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH------------------HHHHHHHHhcCCCeEEEEc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG------------------MGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag------------------~aIyd~Ir~~~~pV~t~v~ 161 (329)
++..+.+.+...+..++.++..+.|+|.= =|.|+++..- ..++..|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 107 (262)
T PRK05995 28 FNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVH 107 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 77788888888888777654444444321 1334554310 2244567788999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|.-|+++|| -|++.+++.|.+-....|.. -+... . .+.+..|. ....+++-...
T Consensus 108 G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~--~-----------~l~~~vg~--~~a~~l~l~g~ 167 (262)
T PRK05995 108 GDAYAGGMGLVAACD--IAVAADHAVFCLSEVRLGLI---PATIS--P-----------YVIRAMGE--RAARRYFLTAE 167 (262)
T ss_pred CEEEhhHHHHHHhCC--EEEeeCCCEEeCcccccccC---ccchH--H-----------HHHHHhCH--HHHHHHHHcCC
Confidence 999999999999999 68999999887644433321 11110 0 11222332 22334443356
Q ss_pred eecHHHHHHcCCceeecCC
Q 020205 242 FMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~ 260 (329)
.++++||+++||||+|+..
T Consensus 168 ~~~a~eA~~~Glv~~vv~~ 186 (262)
T PRK05995 168 RFDAAEALRLGLVHEVVPA 186 (262)
T ss_pred ccCHHHHHHcCCCCeecCH
Confidence 7899999999999999864
No 79
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.43 E-value=6.1e-06 Score=77.19 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=86.5
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH------------HHHHHHHHhcCCCeEEEEccccch
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG------------MGIYDAMKLCKADVSTICLGLAAS 166 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag------------~aIyd~Ir~~~~pV~t~v~G~AAS 166 (329)
.++..+.+.+.+.+..++.++..+.|+|.= =|.|+++.+- ..++..|..+++||++.|.|.|..
T Consensus 23 al~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 102 (248)
T PRK06072 23 ALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAG 102 (248)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeh
Confidence 377888888888888887654445444421 1445665321 224455778889999999999999
Q ss_pred HHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHH
Q 020205 167 MGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAW 246 (329)
Q Consensus 167 aas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~ 246 (329)
+|.-++++|| -|++.+++.|.+.....|.. -+... .. .+.+..|. ...+++-....|+++
T Consensus 103 gG~~lal~cD--~~ia~~~a~f~~~~~~~Gl~---p~~g~-----~~-------~l~~~~g~---~a~~lll~g~~~~a~ 162 (248)
T PRK06072 103 ACIGIALSTD--FKFASRDVKFVTAFQRLGLA---SDTGV-----AY-------FLLKLTGQ---RFYEILVLGGEFTAE 162 (248)
T ss_pred HHHHHHHhCC--EEEEcCCCEEecchhhcCcC---CCchH-----HH-------HHHHHhhH---HHHHHHHhCCccCHH
Confidence 9999999999 68999999887654432221 11110 00 11122231 112222224568999
Q ss_pred HHHHcCCceee
Q 020205 247 EAKEYGLVDAV 257 (329)
Q Consensus 247 EAve~GLID~I 257 (329)
||+++||||++
T Consensus 163 eA~~~Glv~~~ 173 (248)
T PRK06072 163 EAERWGLLKIS 173 (248)
T ss_pred HHHHCCCcccc
Confidence 99999999965
No 80
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.43 E-value=3.8e-06 Score=78.81 Aligned_cols=138 Identities=19% Similarity=0.118 Sum_probs=89.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH------------------HHHHHHHHhcCCCeEEEEc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG------------------MGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag------------------~aIyd~Ir~~~~pV~t~v~ 161 (329)
++..+...+.+.|..++.++ .+.|+|.=+ |-|+++.+- ..+++.|..+++||++.|.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 101 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVN 101 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 67888888888888887654 555554311 334443210 1234567788999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|.-|+++|| .|++.+++.|.+-....|. .-+.... ..+.+..|.. ...+++-...
T Consensus 102 G~a~GgG~~lala~D--~ria~~~a~f~~pe~~lG~---~p~~g~~------------~~l~~~vG~~--~a~~l~l~g~ 162 (256)
T TIGR02280 102 GVAAGAGANLALACD--IVLAAESARFIQAFAKIGL---IPDSGGT------------WSLPRLVGRA--RAMGLAMLGE 162 (256)
T ss_pred CeeehHHHHHHHhCC--EEEecCCCEEeChhhhcCC---CCCccHH------------HHHHHHhCHH--HHHHHHHcCC
Confidence 999999999999999 6899999988753332221 1111000 0111222221 2233333356
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
.++++||+++||||+|...+
T Consensus 163 ~~~a~eA~~~Glv~~vv~~~ 182 (256)
T TIGR02280 163 KLDARTAASWGLIWQVVDDA 182 (256)
T ss_pred CCCHHHHHHcCCcceeeChH
Confidence 79999999999999998754
No 81
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.43 E-value=3e-06 Score=81.21 Aligned_cols=137 Identities=15% Similarity=0.060 Sum_probs=88.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH-------------------------------------
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG------------------------------------- 142 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag------------------------------------- 142 (329)
++..+.+.+.+.|..++.++..+.|+|.=. |-|+++.+.
T Consensus 28 l~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (288)
T PRK08290 28 QNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVY 107 (288)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence 677888888888887775544444444211 334444210
Q ss_pred HHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 020205 143 MGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKIL 222 (329)
Q Consensus 143 ~aIyd~Ir~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iy 222 (329)
..++..|+.+++||++.|.|.|..+|.-|+++|| -|++.+++.|.+-....|..| ... +. +
T Consensus 108 ~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD--~ria~e~a~f~~pe~~lGl~~----~~~----~~---------l 168 (288)
T PRK08290 108 LGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCD--LIVASDDAFFSDPVVRMGIPG----VEY----FA---------H 168 (288)
T ss_pred HHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCC--EEEeeCCCEecCcccccCcCc----chH----HH---------H
Confidence 1233457788999999999999999999999999 689999998875443333322 100 00 0
Q ss_pred HHHcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 223 SRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 223 a~~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
.+..| .....+++-....++++||+++||||+|+..+
T Consensus 169 ~~~iG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~ 205 (288)
T PRK08290 169 PWELG--PRKAKELLFTGDRLTADEAHRLGMVNRVVPRD 205 (288)
T ss_pred HHHhh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHH
Confidence 11122 22333444445689999999999999998753
No 82
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.43 E-value=6.8e-06 Score=77.12 Aligned_cols=140 Identities=20% Similarity=0.151 Sum_probs=90.5
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhH-------------HHHHHHHHHhcCCCeEEEEccccc
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTA-------------GMGIYDAMKLCKADVSTICLGLAA 165 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~a-------------g~aIyd~Ir~~~~pV~t~v~G~AA 165 (329)
.++..+.+.+.+.+..++.++..+.|+|.=+ |-|+++.+ ...++..|..+++||++.+.|.|.
T Consensus 27 al~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~ 106 (257)
T PRK05862 27 ALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYAL 106 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEe
Confidence 3677888888888888776555555554311 23454421 123445677889999999999999
Q ss_pred hHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecH
Q 020205 166 SMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDA 245 (329)
Q Consensus 166 Saas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta 245 (329)
.+|.-++++|| .|++.+++.|.+-....|. .-++... ..+.+..|. ....+++-....+++
T Consensus 107 GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl---~p~~g~~------------~~l~~~vG~--~~a~~l~l~g~~~~a 167 (257)
T PRK05862 107 GGGCELAMMCD--IIIAADTAKFGQPEIKLGV---LPGMGGS------------QRLTRAVGK--AKAMDLCLTGRMMDA 167 (257)
T ss_pred HHHHHHHHHCC--EEEEeCCCEEeCchhccCc---CCCccHH------------HHHHHHhCH--HHHHHHHHhCCccCH
Confidence 99999999999 6899999888753332221 1111100 012222332 222333433568999
Q ss_pred HHHHHcCCceeecCCC
Q 020205 246 WEAKEYGLVDAVIDDG 261 (329)
Q Consensus 246 ~EAve~GLID~I~~~~ 261 (329)
+||+++||||+|+..+
T Consensus 168 ~eA~~~Glv~~vv~~~ 183 (257)
T PRK05862 168 AEAERAGLVSRVVPAD 183 (257)
T ss_pred HHHHHcCCCCEeeCHh
Confidence 9999999999998753
No 83
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.43 E-value=5.5e-06 Score=78.36 Aligned_cols=138 Identities=22% Similarity=0.230 Sum_probs=89.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH--------------------------HHHHHHHHhcC
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG--------------------------MGIYDAMKLCK 153 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag--------------------------~aIyd~Ir~~~ 153 (329)
++..+...+.+.+..++.++..+.|+|.=+ |-|+++.+- ..+++.|..++
T Consensus 30 l~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 109 (272)
T PRK06142 30 MNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCR 109 (272)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHhCC
Confidence 788888888888888775544444444311 233544321 22445577889
Q ss_pred CCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 020205 154 ADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQI 233 (329)
Q Consensus 154 ~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I 233 (329)
+||++.|.|.|..+|.-|+++|| .|++.+++.|.+.....|.. -+... . ..+.+..|.. ..
T Consensus 110 kpvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~~~~G~~--~a 170 (272)
T PRK06142 110 KPVIAAVQGWCIGGGVDLISACD--MRYASADAKFSVREVDLGMV---ADVGS----L--------QRLPRIIGDG--HL 170 (272)
T ss_pred CCEEEEecCccccchHHHHHhCC--EEEecCCCeecchhhhhCCC---CCchH----H--------HHHHHHhCHH--HH
Confidence 99999999999999999999999 68999999887654433321 11110 0 0112223322 23
Q ss_pred HhhhcCCceecHHHHHHcCCceeecCC
Q 020205 234 ELDTDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 234 ~~l~d~d~~lta~EAve~GLID~I~~~ 260 (329)
.+++-....++++||+++||||+|..+
T Consensus 171 ~~l~l~g~~~~a~eA~~~GLv~~vv~~ 197 (272)
T PRK06142 171 RELALTGRDIDAAEAEKIGLVNRVYDD 197 (272)
T ss_pred HHHHHhCCCcCHHHHHHcCCccEecCC
Confidence 333333566899999999999999874
No 84
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.42 E-value=6.6e-06 Score=77.35 Aligned_cols=137 Identities=18% Similarity=0.099 Sum_probs=89.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC-------CchhH---------------HHHHHHHHHhcCCCeEEEEc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFINSPG-------GSVTA---------------GMGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPG-------GsV~a---------------g~aIyd~Ir~~~~pV~t~v~ 161 (329)
++..+...+.+.+..++.++..+.|+| .+-| +++.+ ...+++.|..+++||++.|.
T Consensus 28 l~~~~~~~l~~al~~~~~d~~v~~vVl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 28 LSLALLEELQNILTQINEEANVRVVIL--TGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEE--ecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 788888888888888776544444443 3433 44322 12345667788999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|.-|+++|| -|++.+++.|.+-....|.. -+.... . .+.+..|. .....++-...
T Consensus 106 G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~G~~---p~~g~~-~-----------~l~~~vG~--~~a~~l~l~g~ 166 (260)
T PRK07657 106 GIALGGGLELALACD--FRIAAESASLGLTETTLAII---PGAGGT-Q-----------RLPRLIGV--GRAKELIYTGR 166 (260)
T ss_pred CEeechHHHHHHhCC--EEEeeCCCEEcCchhccCcC---CCccHH-H-----------HHHHHhCH--HHHHHHHHhCC
Confidence 999999999999999 68999999887654433321 111000 0 01111222 12233333345
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
.|+++||+++||||+|...+
T Consensus 167 ~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK07657 167 RISAQEAKEIGLVEFVVPAH 186 (260)
T ss_pred CCCHHHHHHcCCCCeecCHH
Confidence 69999999999999998754
No 85
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.42 E-value=6.9e-06 Score=78.12 Aligned_cols=140 Identities=14% Similarity=0.086 Sum_probs=90.5
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH-------------------HHHHHHHHhcCCCeEEE
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG-------------------MGIYDAMKLCKADVSTI 159 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag-------------------~aIyd~Ir~~~~pV~t~ 159 (329)
.++..+...+...+..++.++..+.|+|.= =|-|+++.+. ..++..|..+++||++.
T Consensus 31 al~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 110 (275)
T PRK09120 31 AMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAM 110 (275)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 378888888888888877655555555431 1334554321 12345677889999999
Q ss_pred EccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcC
Q 020205 160 CLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDR 239 (329)
Q Consensus 160 v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~ 239 (329)
|.|.|..+|.-|+++|| -|++.++++|.+-....|.. -+... ...+.+..|. ....+++-.
T Consensus 111 v~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~---p~~g~------------~~~l~~~iG~--~~a~~lllt 171 (275)
T PRK09120 111 VNGWCFGGGFSPLVACD--LAIAADEAQFGLSEINWGIP---PGGGV------------SKAMADTVGH--RDALYYIMT 171 (275)
T ss_pred EcCEEechhHHHHHhCC--EEEEeCCcEecCCccccCCC---CCcch------------HHHHHHHcCH--HHHHHHHhc
Confidence 99999999999999999 68999999887633322211 11100 0112222332 223333333
Q ss_pred CceecHHHHHHcCCceeecCCC
Q 020205 240 DNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 240 d~~lta~EAve~GLID~I~~~~ 261 (329)
...|+++||+++||||+|+..+
T Consensus 172 g~~~~A~eA~~~Glv~~vv~~~ 193 (275)
T PRK09120 172 GETFTGRKAAEMGLVNESVPLA 193 (275)
T ss_pred CCccCHHHHHHcCCcceecCHH
Confidence 5679999999999999998754
No 86
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.42 E-value=4.6e-06 Score=78.67 Aligned_cols=141 Identities=19% Similarity=0.144 Sum_probs=90.3
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCchhH----------------HHHHHHHHHhcCCCeEEEEc
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFI-----NSPGGSVTA----------------GMGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-----NSPGGsV~a----------------g~aIyd~Ir~~~~pV~t~v~ 161 (329)
.++..+.+.+...|..++.++..+.|+|.= =|.|+++.. ...++..|..+++||++.+.
T Consensus 31 al~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 110 (262)
T PRK06144 31 AMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIA 110 (262)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 367778888888888877654445554431 133455432 11244556788999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|.-++++|| .|++.+++.|.+-... ..|-.-.... . ..+.+..|. ....+++-...
T Consensus 111 G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~--~~G~~p~~g~----~--------~~l~~~vG~--~~a~~l~l~g~ 172 (262)
T PRK06144 111 GACVGGGAAIAAACD--LRIATPSARFGFPIAR--TLGNCLSMSN----L--------ARLVALLGA--ARVKDMLFTAR 172 (262)
T ss_pred CeeeehHHHHHHhCC--EEEecCCCEeechhHH--hccCCCCccH----H--------HHHHHHhCH--HHHHHHHHcCC
Confidence 999999999999999 6899999988753321 0111111100 0 012223332 22334444467
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
.++++||+++||||+|...+
T Consensus 173 ~~~a~eA~~~Glv~~vv~~~ 192 (262)
T PRK06144 173 LLEAEEALAAGLVNEVVEDA 192 (262)
T ss_pred CcCHHHHHHcCCcCeecCHH
Confidence 89999999999999998753
No 87
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.38 E-value=1.1e-05 Score=74.48 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=86.2
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC------CCchhH--------------HHHHHHHHHhcCCCeEEEEcc
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFINSP------GGSVTA--------------GMGIYDAMKLCKADVSTICLG 162 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSP------GGsV~a--------------g~aIyd~Ir~~~~pV~t~v~G 162 (329)
.++..+.+.+.+.+..++ +..+.|+ |... |+++.. ...++..|..+++||++.|.|
T Consensus 25 al~~~~~~~l~~~l~~~~--~~~~vvv--l~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 100 (229)
T PRK06213 25 ALSPAMIDALNAALDQAE--DDRAVVV--ITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTG 100 (229)
T ss_pred CCCHHHHHHHHHHHHHhh--ccCcEEE--EeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 377778888888887765 2233333 3333 444321 123445566788999999999
Q ss_pred ccchHHHHHHhcCCCCcEEEecC-ceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 163 LAASMGAFLLAAGSKGKRYCMPN-ARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 163 ~AASaas~Ia~AGdkg~R~a~Pn-S~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
.|..+|..|+++|| .|++.++ +.|.+-....|.. +.... . ..+.++.|.. ...+++-.+.
T Consensus 101 ~a~GgG~~lal~~D--~rva~~~~a~f~~pe~~~Gl~--~~~~~-----~--------~~l~~~~g~~--~a~~lll~g~ 161 (229)
T PRK06213 101 HAIAKGAFLLLSAD--YRIGVHGPFKIGLNEVAIGMT--MPHAA-----I--------ELARDRLTPS--AFQRAVINAE 161 (229)
T ss_pred eeeHHHHHHHHhCC--eeeEecCCcEEECchhhhCCc--CChHH-----H--------HHHHHHcCHH--HHHHHHHcCc
Confidence 99999999999999 6899998 8887644332211 11100 0 0112222322 2333444467
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
.++++||+++||||+|...+
T Consensus 162 ~~~a~eA~~~Glv~~vv~~~ 181 (229)
T PRK06213 162 MFDPEEAVAAGFLDEVVPPE 181 (229)
T ss_pred ccCHHHHHHCCCceeccChH
Confidence 89999999999999998643
No 88
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.38 E-value=1.4e-05 Score=75.03 Aligned_cols=139 Identities=18% Similarity=0.040 Sum_probs=89.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCchhHHH----------HHHHHH-HhcCCCeEEEEccccchHH
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLF----INSPGGSVTAGM----------GIYDAM-KLCKADVSTICLGLAASMG 168 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~----INSPGGsV~ag~----------aIyd~I-r~~~~pV~t~v~G~AASaa 168 (329)
++..+...+.+.|..++.++..+.|+|. .=|.|+++.+.. .+...+ ..+++||++.|.|.|..+|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG 106 (254)
T PRK08252 27 VNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGG 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEehHH
Confidence 7888888888888888765545555442 124456654310 111111 3578999999999999999
Q ss_pred HHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHH
Q 020205 169 AFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEA 248 (329)
Q Consensus 169 s~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EA 248 (329)
.-++++|| -|++.+++.|.+-....|. .-++.. ...+.+..|. ....+++-....|+++||
T Consensus 107 ~~lalacD--~~ia~~~a~f~~pe~~~Gl---~p~~g~------------~~~l~~~vg~--~~a~~l~l~g~~~~a~eA 167 (254)
T PRK08252 107 FELALACD--LIVAARDAKFGLPEVKRGL---VAAGGG------------LLRLPRRIPY--HIAMELALTGDMLTAERA 167 (254)
T ss_pred HHHHHhCC--EEEEeCCCEEeCchhhcCC---CCCchH------------HHHHHHHcCH--HHHHHHHHcCCccCHHHH
Confidence 99999999 6899999988653332221 111110 0112223332 233444444567999999
Q ss_pred HHcCCceeecCCC
Q 020205 249 KEYGLVDAVIDDG 261 (329)
Q Consensus 249 ve~GLID~I~~~~ 261 (329)
+++||||+|+..+
T Consensus 168 ~~~Glv~~vv~~~ 180 (254)
T PRK08252 168 HELGLVNRLTEPG 180 (254)
T ss_pred HHcCCcceecCcc
Confidence 9999999998754
No 89
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.38 E-value=6.4e-06 Score=77.45 Aligned_cols=139 Identities=17% Similarity=0.090 Sum_probs=90.0
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH-------------------HHHHHHHHhcCCCeEEE
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG-------------------MGIYDAMKLCKADVSTI 159 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag-------------------~aIyd~Ir~~~~pV~t~ 159 (329)
.++..+...+.+.+..++ ++..+.|+|.= =|.|+++.+- ..++..|..+++||++.
T Consensus 27 al~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 105 (262)
T PRK08140 27 SFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAA 105 (262)
T ss_pred CCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 367788888888888887 55555555531 1444554321 11445677889999999
Q ss_pred EccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcC
Q 020205 160 CLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDR 239 (329)
Q Consensus 160 v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~ 239 (329)
|.|.|..+|.-|+++|| -|++.+++.|.+-....| -.-...... .+.+..|. ....+++-.
T Consensus 106 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~G---~~p~~g~~~------------~l~~~vG~--~~a~~l~l~ 166 (262)
T PRK08140 106 VNGVAAGAGANLALACD--IVLAARSASFIQAFVKIG---LVPDSGGTW------------FLPRLVGM--ARALGLALL 166 (262)
T ss_pred ECCeeehhHHHHHHhCC--EEEecCCCEEeccccccC---CCCCccHHH------------HHHHHhCH--HHHHHHHHc
Confidence 99999999999999999 689999998875332222 111110000 01112222 222334434
Q ss_pred CceecHHHHHHcCCceeecCCC
Q 020205 240 DNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 240 d~~lta~EAve~GLID~I~~~~ 261 (329)
...|+++||+++||||+|...+
T Consensus 167 g~~~~a~eA~~~Glv~~vv~~~ 188 (262)
T PRK08140 167 GEKLSAEQAEQWGLIWRVVDDA 188 (262)
T ss_pred CCCcCHHHHHHcCCccEeeChH
Confidence 5679999999999999998754
No 90
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.38 E-value=9.7e-06 Score=76.02 Aligned_cols=139 Identities=18% Similarity=0.097 Sum_probs=87.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH---------------HH-HHHHHHhcCCCeEEEEccc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG---------------MG-IYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag---------------~a-Iyd~Ir~~~~pV~t~v~G~ 163 (329)
++..+.+.+.+.+..++.++..+.|+|.= =|-|+++... .. ++..|+.+++||++.|.|.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 102 (255)
T PRK06563 23 FDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGY 102 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCe
Confidence 77788888888888777544434333311 0334554320 11 1224667889999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcee
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFM 243 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~l 243 (329)
|..+|..++++|| .|++.+++.|.+.....|.. -...... .+.+..|.. ...+++-....|
T Consensus 103 a~GgG~~lal~cD--~ria~~~a~f~~pe~~~Gl~---p~~g~~~------------~l~~~vG~~--~a~~l~ltg~~~ 163 (255)
T PRK06563 103 CLTLGIELMLAAD--IVVAADNTRFAQLEVQRGIL---PFGGATL------------RFPQAAGWG--NAMRYLLTGDEF 163 (255)
T ss_pred eecHHHHHHHhCC--EEEecCCCEEeChhhhcCCC---CCccHHH------------HHHHHhhHH--HHHHHHHcCCCc
Confidence 9999999999999 68999999987755443321 1100000 011222221 223334335678
Q ss_pred cHHHHHHcCCceeecCCC
Q 020205 244 DAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 244 ta~EAve~GLID~I~~~~ 261 (329)
+++||+++||||+|...+
T Consensus 164 ~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK06563 164 DAQEALRLGLVQEVVPPG 181 (255)
T ss_pred CHHHHHHcCCCcEeeCHH
Confidence 999999999999998754
No 91
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.37 E-value=7.3e-06 Score=78.82 Aligned_cols=139 Identities=18% Similarity=0.080 Sum_probs=87.1
Q ss_pred cChhHHHHHHHHHHhhhh-----cCCCCCeEEEEe-----CCCCchhHH----------------HHHHHHHH------h
Q 020205 104 VDDLTADFIISQLLFLDA-----EDSKKDIRLFIN-----SPGGSVTAG----------------MGIYDAMK------L 151 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~-----~~~~k~I~L~IN-----SPGGsV~ag----------------~aIyd~Ir------~ 151 (329)
++..+...+...+..++. ++..+.|+|.=+ |.|+++... ..+++.+. .
T Consensus 40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (287)
T PRK08788 40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG 119 (287)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 677778888888887765 333344444222 345554321 11233333 5
Q ss_pred cCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 020205 152 CKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQ 231 (329)
Q Consensus 152 ~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e 231 (329)
++.||++.|.|.|..+|.-|+++|| -|++.+++.|.+-....|. .-++.- ...+.+..|. .
T Consensus 120 ~pkPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~pev~lGl---~p~~g~------------~~~l~~~vG~--~ 180 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSHH--TIIAERGAKMGFPEILFNL---FPGMGA------------YSFLARRVGP--K 180 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCC--EEEecCCCEeeCchhhhCc---CCCchH------------HHHHHHHhhH--H
Confidence 7899999999999999999999999 6899999987753332221 111110 0112223332 2
Q ss_pred HHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 232 QIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 232 ~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
...+++-.+..|+++||+++||||+|.+.+
T Consensus 181 ~A~ellltG~~l~A~eA~~~GLV~~vv~~~ 210 (287)
T PRK08788 181 LAEELILSGKLYTAEELHDMGLVDVLVEDG 210 (287)
T ss_pred HHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence 334444445679999999999999998754
No 92
>PRK08321 naphthoate synthase; Validated
Probab=98.36 E-value=1.3e-05 Score=77.28 Aligned_cols=139 Identities=17% Similarity=0.071 Sum_probs=93.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEE-----------EeCCCCchhHH-----------------------H---HHH
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLF-----------INSPGGSVTAG-----------------------M---GIY 146 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~-----------INSPGGsV~ag-----------------------~---aIy 146 (329)
++..+...+...|..++.++..+.|+|. .=|.||++... . .++
T Consensus 49 l~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (302)
T PRK08321 49 FRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQ 128 (302)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 7888888899999888766556666664 33677775420 0 234
Q ss_pred HHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEEEe-cCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 020205 147 DAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCM-PNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRA 225 (329)
Q Consensus 147 d~Ir~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~-PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~ 225 (329)
+.|..+++||++.|.|.|..+|.-|+++|| -|++. +++.|.+-....|.. ....- ...+.+.
T Consensus 129 ~~l~~~pkP~IAaV~G~a~GgG~~lalacD--~ria~~~~a~f~~pe~~~Gl~---p~~~~------------~~~L~r~ 191 (302)
T PRK08321 129 RLIRFMPKVVIAVVPGWAAGGGHSLHVVCD--LTLASREHARFKQTDADVGSF---DGGYG------------SAYLARQ 191 (302)
T ss_pred HHHHcCCCCEEEEEcCeeehHHHHHHHhCC--EEEEecCCCEEECCccccccC---CCchH------------HHHHHHH
Confidence 557788999999999999999999999999 58898 588886533322211 00000 0012223
Q ss_pred cCCCHHHHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 226 TGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 226 tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
.|. ....+++-....|+++||++.||||+|++.+
T Consensus 192 vG~--~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~ 225 (302)
T PRK08321 192 VGQ--KFAREIFFLGRTYSAEEAHDMGAVNAVVPHA 225 (302)
T ss_pred hCH--HHHHHHHHcCCccCHHHHHHCCCceEeeCHH
Confidence 332 2233444445689999999999999998753
No 93
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.36 E-value=6.2e-06 Score=77.32 Aligned_cols=137 Identities=19% Similarity=0.118 Sum_probs=88.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CchhH-------------------HHHHHHHHHhcCCCeEE
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFINSPG------GSVTA-------------------GMGIYDAMKLCKADVST 158 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPG------GsV~a-------------------g~aIyd~Ir~~~~pV~t 158 (329)
++..+...+.+.|..++.++..+.|+| .+-| +++.. ...++..|+.+++||++
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 26 FNIPMCQEILEALRLAEEDPSVRFLLI--NANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 677888888888887775544444443 3433 44321 12344567788999999
Q ss_pred EEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhc
Q 020205 159 ICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTD 238 (329)
Q Consensus 159 ~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d 238 (329)
.+.|.|..+|..++++|| -|++.+++.|.+-....|.. -++... ..+.+..|. ....+++-
T Consensus 104 av~G~a~GgG~~lala~D--~ria~~~a~f~~pe~~~Gl~---p~~g~~------------~~l~~~vg~--~~a~~l~l 164 (255)
T PRK07260 104 CVDGAVAGAAANMAVAAD--FCIASTKTKFIQAFVGVGLA---PDAGGL------------FLLTRAIGL--NRATHLAM 164 (255)
T ss_pred EecCeeehhhHHHHHhCC--EEEEeCCCEEechHhhcCCC---CCCchh------------hhhHHhhCH--HHHHHHHH
Confidence 999999999999999999 68999999887532221211 111000 011122232 22344444
Q ss_pred CCceecHHHHHHcCCceeecCCC
Q 020205 239 RDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 239 ~d~~lta~EAve~GLID~I~~~~ 261 (329)
....++++||+++||||+|.+.+
T Consensus 165 ~g~~~sa~eA~~~Glv~~vv~~~ 187 (255)
T PRK07260 165 TGEALTAEKALEYGFVYRVAESE 187 (255)
T ss_pred hCCccCHHHHHHcCCcceecCHh
Confidence 45789999999999999998753
No 94
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.35 E-value=8.3e-06 Score=80.69 Aligned_cols=141 Identities=15% Similarity=0.043 Sum_probs=90.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCchhH------------------HHHHHHHHHhcCCCeEEEE
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI-----NSPGGSVTA------------------GMGIYDAMKLCKADVSTIC 160 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-----NSPGGsV~a------------------g~aIyd~Ir~~~~pV~t~v 160 (329)
++..+...+...+..+..++..+.|+|.= =|-|+++.+ ...+++.|..+++||++.|
T Consensus 52 ls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAV 131 (360)
T TIGR03200 52 YTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRV 131 (360)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 77888888888888877654444444421 123344332 1234566778899999999
Q ss_pred ccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCC
Q 020205 161 LGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRD 240 (329)
Q Consensus 161 ~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d 240 (329)
.|.|..+|.-|+++|| .|++.+++.|.+-....|.. -+... ...+.+..|.. ....++-..
T Consensus 132 nG~AiGGGleLALaCD--lrIAse~A~Fg~PE~rlGl~---P~~Gg------------t~rLprlvG~~--rA~~llltG 192 (360)
T TIGR03200 132 NGMRIGGGQEIGMAAD--FTIAQDLANFGQAGPKHGSA---PIGGA------------TDFLPLMIGCE--QAMVSGTLC 192 (360)
T ss_pred CCEeeeHHHHHHHhCC--EEEEcCCCEEeCchhccCCC---CCccH------------HHHHHHhhCHH--HHHHHHHhC
Confidence 9999999999999999 68999999988644433221 11100 00112222321 222222224
Q ss_pred ceecHHHHHHcCCceeecCCCCC
Q 020205 241 NFMDAWEAKEYGLVDAVIDDGKP 263 (329)
Q Consensus 241 ~~lta~EAve~GLID~I~~~~~~ 263 (329)
..|+++||++.||||+|.+..+.
T Consensus 193 e~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 193 EPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred CcCcHHHHHHcCChheecCchhc
Confidence 57999999999999999986653
No 95
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.34 E-value=1.6e-05 Score=74.96 Aligned_cols=139 Identities=17% Similarity=0.056 Sum_probs=89.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHHH----------------HH--HHHHHhcCCCeEEEEc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAGM----------------GI--YDAMKLCKADVSTICL 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag~----------------aI--yd~Ir~~~~pV~t~v~ 161 (329)
++..+.+.+...+..++.++..+.|+|.=+ |.|+++.+.. .+ ...++.+++||++.|.
T Consensus 29 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~ 108 (263)
T PRK07799 29 LSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVE 108 (263)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEEEC
Confidence 778888889988888876555554444211 3345543210 01 1113567899999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|.-|+++|| -|++.+++.|.+.....|.. -+... . ..+.+..|. ....+++-...
T Consensus 109 G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~----~--------~~l~r~vG~--~~a~~l~ltg~ 169 (263)
T PRK07799 109 GPAIAGGTEILQGTD--IRVAGESAKFGISEAKWSLF---PMGGS----A--------VRLVRQIPY--TVACDLLLTGR 169 (263)
T ss_pred CeEeccHHHHHHhCC--EEEecCCCEecCcccccCcC---CCccH----H--------HHHHHHhCH--HHHHHHHHcCC
Confidence 999999999999999 68999999887654433321 11110 0 012222332 23344444456
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
.|+++||+++||||+|.+.+
T Consensus 170 ~~~a~eA~~~Glv~~vv~~~ 189 (263)
T PRK07799 170 HITAAEAKEIGLIGHVVPDG 189 (263)
T ss_pred CCCHHHHHHcCCccEecCcc
Confidence 79999999999999998764
No 96
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.34 E-value=1.2e-05 Score=76.02 Aligned_cols=137 Identities=13% Similarity=0.050 Sum_probs=89.2
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH------------------HHHHHHHHhcCCCeEEEEc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG------------------MGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag------------------~aIyd~Ir~~~~pV~t~v~ 161 (329)
++..+...+.+.+..++.++..+.|+|.=+ |.|+++... ..+...|+.+++||++.|.
T Consensus 30 l~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~ 109 (265)
T PRK05674 30 FNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQ 109 (265)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 677788888888887776555555554211 445554310 1344556788999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|.-++++|| -|++.+++.|.+-....|.. -++.. ..+.+..|.. ...+++-...
T Consensus 110 G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gi~---p~~~~-------------~~l~~~vG~~--~a~~l~ltg~ 169 (265)
T PRK05674 110 GAAFGGALGLISCCD--MAIGADDAQFCLSEVRIGLA---PAVIS-------------PFVVKAIGER--AARRYALTAE 169 (265)
T ss_pred CEEEechhhHhhhcC--EEEEeCCCEEeCcccccCCC---cchhH-------------HHHHHHhCHH--HHHHHHHhCc
Confidence 999999999999999 68999999887633322221 11110 0112223322 2233333345
Q ss_pred eecHHHHHHcCCceeecCC
Q 020205 242 FMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~ 260 (329)
.|+++||+++||||+|...
T Consensus 170 ~~~a~eA~~~Glv~~vv~~ 188 (265)
T PRK05674 170 RFDGRRARELGLLAESYPA 188 (265)
T ss_pred ccCHHHHHHCCCcceecCH
Confidence 7899999999999999874
No 97
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.34 E-value=2.1e-05 Score=73.42 Aligned_cols=139 Identities=17% Similarity=0.086 Sum_probs=87.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCchhHH-----------------HHHHHHHHhcCCCeEEEEc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN-----SPGGSVTAG-----------------MGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN-----SPGGsV~ag-----------------~aIyd~Ir~~~~pV~t~v~ 161 (329)
++..+...+...+..++.++....++|.=. |.|+++... ..++..|..+++||++.|.
T Consensus 23 l~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~ 102 (239)
T PLN02267 23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVT 102 (239)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 778888888888887775433333333222 345554221 1244557788899999999
Q ss_pred cccchHHHHHHhcCCCCcEEEec-CceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCC
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMP-NARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRD 240 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~P-nS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d 240 (329)
|.|..+|.-|+++|| .|++.+ .+.|.+-....|.. ..... ...+.++.|.... ..+++-..
T Consensus 103 G~a~GgG~~lalacD--~ria~~~~a~f~~pe~~~Gl~--~p~~~-------------~~~l~~~vG~~~a-~~~llltG 164 (239)
T PLN02267 103 GHASAAGFILALSHD--YVLMRKDRGVLYMSEVDIGLP--LPDYF-------------MALLRAKIGSPAA-RRDVLLRA 164 (239)
T ss_pred CcchHHHHHHHHHCC--EEEecCCCCeEeccccccCCC--CChHH-------------HHHHHHHcChHHH-HHHHHHcC
Confidence 999999999999999 588875 46676544333321 01110 0122333443322 12344445
Q ss_pred ceecHHHHHHcCCceeecCC
Q 020205 241 NFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 241 ~~lta~EAve~GLID~I~~~ 260 (329)
..|+++||+++||||+|...
T Consensus 165 ~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 165 AKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred CcCCHHHHHHCCCcceecCC
Confidence 78999999999999999863
No 98
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.32 E-value=7e-06 Score=79.11 Aligned_cols=135 Identities=12% Similarity=-0.037 Sum_probs=91.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhH-------------------H-----------HHHHHHH
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTA-------------------G-----------MGIYDAM 149 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~a-------------------g-----------~aIyd~I 149 (329)
++..+...+.+.|..++.++..+.|+|.= =|-|+++.+ . ...+..|
T Consensus 29 l~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (298)
T PRK12478 29 IVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAI 108 (298)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHHHHH
Confidence 78888888888888887655455555421 134455431 0 0134457
Q ss_pred HhcCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 020205 150 KLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLG-TAGGKATDMSIRIREMSYHKVKLNKILSRATGK 228 (329)
Q Consensus 150 r~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~-~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~ 228 (329)
..+++||++.|.|.|..+|.-|+++|| -|++.+++.|.+-.... +... .. . + ..+.|
T Consensus 109 ~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~A~f~~pe~~l~G~~~--~~-----~-~-----------~~~vG- 166 (298)
T PRK12478 109 WRASKPVIAQVHGWCVGGASDYALCAD--IVIASDDAVIGTPYSRMWGAYL--TG-----M-W-----------LYRLS- 166 (298)
T ss_pred HhCCCCEEEEEccEEehhHHHHHHHCC--EEEEcCCcEEeccccccccCCc--hh-----H-H-----------HHHhh-
Confidence 788999999999999999999999999 58999999988654431 2221 00 0 0 01122
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 229 PVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 229 s~e~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
.....+++-....|+++||+++||||+|+..+
T Consensus 167 -~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~ 198 (298)
T PRK12478 167 -LAKVKWHSLTGRPLTGVQAAEAELINEAVPFE 198 (298)
T ss_pred -HHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 23344455446789999999999999998753
No 99
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.31 E-value=1.7e-05 Score=74.53 Aligned_cols=139 Identities=20% Similarity=0.058 Sum_probs=88.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHHH-----HH--------HHHHHhcCCCeEEEEccccch
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAGM-----GI--------YDAMKLCKADVSTICLGLAAS 166 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag~-----aI--------yd~Ir~~~~pV~t~v~G~AAS 166 (329)
++..+...+...|..++.++..+.|+|.= =|.|+++.+.. .. ...+..+++||++.|.|.|..
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 106 (254)
T PRK08259 27 VDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVA 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEEEh
Confidence 77888888888888887655555444421 14456654311 01 112235689999999999999
Q ss_pred HHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHH
Q 020205 167 MGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAW 246 (329)
Q Consensus 167 aas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~ 246 (329)
+|.-++++|| .|++.+++.|.+-....|. ...... . ..+.+..|. ....+++-....|+++
T Consensus 107 gG~~lalacD--~~ia~~~a~f~~pe~~~Gl---~p~~g~----~--------~~l~~~iG~--~~a~~lll~g~~~~a~ 167 (254)
T PRK08259 107 GGLELALWCD--LRVAEEDAVFGVFCRRWGV---PLIDGG----T--------VRLPRLIGH--SRAMDLILTGRPVDAD 167 (254)
T ss_pred HHHHHHHhCC--EEEecCCCEecCcccccCC---CCCccH----H--------HHHHHHhCH--HHHHHHHHcCCccCHH
Confidence 9999999999 6899999988653332221 111000 0 011222332 2233444445689999
Q ss_pred HHHHcCCceeecCCC
Q 020205 247 EAKEYGLVDAVIDDG 261 (329)
Q Consensus 247 EAve~GLID~I~~~~ 261 (329)
||+++||||+|...+
T Consensus 168 eA~~~Glv~~vv~~~ 182 (254)
T PRK08259 168 EALAIGLANRVVPKG 182 (254)
T ss_pred HHHHcCCCCEeeChh
Confidence 999999999998754
No 100
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.31 E-value=1.5e-05 Score=76.63 Aligned_cols=136 Identities=11% Similarity=0.010 Sum_probs=89.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH-------------------------------------
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG------------------------------------- 142 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag------------------------------------- 142 (329)
++..+...+.+.+..++.++..+.|+|.=+ |-|+++.+.
T Consensus 34 l~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (302)
T PRK08272 34 ITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMM 113 (302)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHHHH
Confidence 788888888888888776555554444221 344554321
Q ss_pred ---HHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHH
Q 020205 143 ---MGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLN 219 (329)
Q Consensus 143 ---~aIyd~Ir~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~ 219 (329)
..++..|..+++||++.|.|.|..+|.-|+++|| -|++.+++.|.+-... ..|-+.. ..
T Consensus 114 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~~ias~~a~f~~pe~~--~gg~~~~----~~---------- 175 (302)
T PRK08272 114 SRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCD--QVIAADDAKIGYPPTR--VWGVPAT----GM---------- 175 (302)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCC--EEEEeCCCEecCcchh--cccCChH----HH----------
Confidence 1235567788999999999999999999999999 6899999988643322 1121110 00
Q ss_pred HHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 220 KILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 220 ~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
+....|. ....+++=.+..|+++||+++||||+|+..+
T Consensus 176 --~~~~vG~--~~A~~llltG~~i~a~eA~~~GLv~~vv~~~ 213 (302)
T PRK08272 176 --WAYRLGP--QRAKRLLFTGDCITGAQAAEWGLAVEAVPPE 213 (302)
T ss_pred --HHHHhhH--HHHHHHHHcCCccCHHHHHHcCCCceecCHH
Confidence 1112232 2333444445689999999999999998743
No 101
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.27 E-value=1.9e-05 Score=74.12 Aligned_cols=136 Identities=16% Similarity=0.037 Sum_probs=88.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH-----------------HHHHHHHHhcCCCeEEEEcc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG-----------------MGIYDAMKLCKADVSTICLG 162 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag-----------------~aIyd~Ir~~~~pV~t~v~G 162 (329)
++..+...+...|..++. ..+.|+|.= =|.|+++..- ..++..|..+++||++.|.|
T Consensus 28 l~~~~~~~L~~~l~~~~~--~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 105 (255)
T PRK07112 28 INDRLIAECMDVLDRCEH--AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRG 105 (255)
T ss_pred CCHHHHHHHHHHHHHhhc--CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEec
Confidence 677788888888877662 234443321 1445554320 12445567788999999999
Q ss_pred ccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCce
Q 020205 163 LAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNF 242 (329)
Q Consensus 163 ~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~ 242 (329)
.|..+|..|+++|| -|++.+++.|.+.....|... ... . ..+.+..|.. ...+++-....
T Consensus 106 ~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~Gl~p---~~~-----~--------~~l~~~vg~~--~a~~l~l~g~~ 165 (255)
T PRK07112 106 KVNAGGIGFVAASD--IVIADETAPFSLSELLFGLIP---ACV-----L--------PFLIRRIGTQ--KAHYMTLMTQP 165 (255)
T ss_pred EEEcchhHHHHcCC--EEEEcCCCEEeCchhhhccCc---chh-----h--------HHHHHHhCHH--HHHHHHHhCCc
Confidence 99999999999999 689999999987554433221 110 0 0122233322 22334433567
Q ss_pred ecHHHHHHcCCceeecCCC
Q 020205 243 MDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 243 lta~EAve~GLID~I~~~~ 261 (329)
++++||++.||||+|..+.
T Consensus 166 ~~a~eA~~~Glv~~vv~~~ 184 (255)
T PRK07112 166 VTAQQAFSWGLVDAYGANS 184 (255)
T ss_pred ccHHHHHHcCCCceecCcH
Confidence 9999999999999998753
No 102
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.27 E-value=7.1e-06 Score=76.75 Aligned_cols=136 Identities=20% Similarity=0.084 Sum_probs=88.1
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH---------------HHHHHHHHhcCCCeEEEEccc
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG---------------MGIYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag---------------~aIyd~Ir~~~~pV~t~v~G~ 163 (329)
.++..+.+.+.+.+..++.++..+.|+|.= =|.|+++.+. ...+..|..+++||++.+.|.
T Consensus 26 al~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 105 (249)
T PRK05870 26 AVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGA 105 (249)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 367888888888888877654444444421 1344554321 123345667899999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCC-CChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCce
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAG-GKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNF 242 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~-G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~ 242 (329)
|..+|.-++++|| .|++.+++.|.+.....|.. +-..- ..+.+..| .....+++-.+..
T Consensus 106 a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~~----------------~~l~~~~G--~~~a~~l~ltg~~ 165 (249)
T PRK05870 106 AVGAGLNLALAAD--VRIAGPKALFDARFQKLGLHPGGGAT----------------WMLQRAVG--PQVARAALLFGMR 165 (249)
T ss_pred eEchhHHHHHhCC--EEEEcCCCEEeCcccccCcCCCCcce----------------eeHHhhhC--HHHHHHHHHhCCc
Confidence 9999999999999 68999999987654433321 10000 00112222 2223344434568
Q ss_pred ecHHHHHHcCCceeec
Q 020205 243 MDAWEAKEYGLVDAVI 258 (329)
Q Consensus 243 lta~EAve~GLID~I~ 258 (329)
++++||++.||||+|.
T Consensus 166 ~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 166 FDAEAAVRHGLALMVA 181 (249)
T ss_pred cCHHHHHHcCCHHHHH
Confidence 9999999999999998
No 103
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.23 E-value=1.8e-05 Score=74.42 Aligned_cols=135 Identities=19% Similarity=0.081 Sum_probs=86.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH----------------HHHHHHHHhcCCCeEEEEccc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG----------------MGIYDAMKLCKADVSTICLGL 163 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag----------------~aIyd~Ir~~~~pV~t~v~G~ 163 (329)
++..+...+...+..+. ++..+.|+|.= =|.|+++.+- ..++..|..++.||++.+.|.
T Consensus 30 l~~~~~~~l~~~l~~~~-d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~ 108 (260)
T PRK07659 30 LDEPMLKELLQALKEVA-ESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGP 108 (260)
T ss_pred CCHHHHHHHHHHHHHhc-CCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Confidence 77788888888888773 33333333311 1334554321 123445667789999999999
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcee
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFM 243 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~l 243 (329)
|..+|.-++++|| .|++.+++.|.+.....|..- +... . ..+.+..| .....+++-....|
T Consensus 109 a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~p---~~g~-----~-------~~L~~~vg--~~~a~~l~ltg~~~ 169 (260)
T PRK07659 109 AAGLGLSIALTAD--YVIADISAKLAMNFIGIGLIP---DGGG-----H-------FFLQKRVG--ENKAKQIIWEGKKL 169 (260)
T ss_pred eecHHHHHHHhCC--EEEEcCCCEEcCchhhcCCCC---CCch-----h-------hhHHHhcC--HHHHHHHHHhCCcc
Confidence 9999999999999 689999998876654333211 1000 0 01122222 23334444446789
Q ss_pred cHHHHHHcCCceeec
Q 020205 244 DAWEAKEYGLVDAVI 258 (329)
Q Consensus 244 ta~EAve~GLID~I~ 258 (329)
+++||+++||||+|.
T Consensus 170 ~a~eA~~~Glv~~vv 184 (260)
T PRK07659 170 SATEALDLGLIDEVI 184 (260)
T ss_pred CHHHHHHcCChHHHh
Confidence 999999999999998
No 104
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.23 E-value=1.8e-05 Score=74.42 Aligned_cols=135 Identities=16% Similarity=0.094 Sum_probs=83.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CchhH------------------HHHHHHHHHhcCCCeEEE
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFINSPG------GSVTA------------------GMGIYDAMKLCKADVSTI 159 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPG------GsV~a------------------g~aIyd~Ir~~~~pV~t~ 159 (329)
++..+...+...+..++.++..+.|+| .+.| +++.+ ...+++.|..+++||++.
T Consensus 30 l~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 107 (260)
T PRK07827 30 LSARLVAQLHDGLRAAAADPAVRAVVL--THTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAA 107 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 677778888888877765444444443 4444 33321 022445567889999999
Q ss_pred EccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcC
Q 020205 160 CLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDR 239 (329)
Q Consensus 160 v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~ 239 (329)
|.|.|..+|.-|+++|| -|++.+++.|.+-....|. .-++... .+ +.+ .+ .....+++-.
T Consensus 108 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl---~p~~g~~--~~------l~~-----l~--~~~a~~l~l~ 167 (260)
T PRK07827 108 IDGHVRAGGFGLVGACD--IVVAGPESTFALTEARIGV---APAIISL--TL------LPR-----LS--PRAAARYYLT 167 (260)
T ss_pred EcCeeecchhhHHHhCC--EEEEcCCCEEeCcccccCC---CCCcccc--hh------HHh-----hh--HHHHHHHHHh
Confidence 99999999999999999 6899999988763332221 1111100 00 000 01 0012222323
Q ss_pred CceecHHHHHHcCCceeecCC
Q 020205 240 DNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 240 d~~lta~EAve~GLID~I~~~ 260 (329)
...++++||+++||||+|.++
T Consensus 168 g~~~~a~eA~~~Glv~~v~~~ 188 (260)
T PRK07827 168 GEKFGAAEAARIGLVTAAADD 188 (260)
T ss_pred CCccCHHHHHHcCCcccchHH
Confidence 467899999999999999643
No 105
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.21 E-value=2.8e-05 Score=75.92 Aligned_cols=130 Identities=17% Similarity=0.223 Sum_probs=88.2
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhH-------HHHHHHHHH---hcCCCeEEEEccccchHHHH
Q 020205 101 GSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTA-------GMGIYDAMK---LCKADVSTICLGLAASMGAF 170 (329)
Q Consensus 101 ~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~a-------g~aIyd~Ir---~~~~pV~t~v~G~AASaas~ 170 (329)
.|.+++..++...+-+...+. -.-+|+-.|||||..+.. +.+|...+. ....|+++++.|-|.|+|++
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~--f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAl 206 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEK--FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGAL 206 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHH
Confidence 456677777766666654443 246999999999987531 234555555 55699999999999999998
Q ss_pred HHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHHHH
Q 020205 171 LLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKE 250 (329)
Q Consensus 171 Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve 250 (329)
.+..+| ..+|.|++.+.+-.|-+.+ .+.. +...+ .++..+ ..-+|+.++++
T Consensus 207 a~~~aD--~v~m~~~A~~svisPEg~a------------~Il~----------~~~~~-a~~aae----~~~ita~~l~~ 257 (319)
T PRK05724 207 AIGVGD--RVLMLEYSTYSVISPEGCA------------SILW----------KDASK-APEAAE----AMKITAQDLKE 257 (319)
T ss_pred HHhccC--eeeeecCceEeecCHHHHH------------HHHh----------cCchh-HHHHHH----HcCCCHHHHHH
Confidence 888888 5788899998877664310 0110 00011 122222 23379999999
Q ss_pred cCCceeecCCC
Q 020205 251 YGLVDAVIDDG 261 (329)
Q Consensus 251 ~GLID~I~~~~ 261 (329)
.|+||+|+.+.
T Consensus 258 ~g~iD~II~Ep 268 (319)
T PRK05724 258 LGIIDEIIPEP 268 (319)
T ss_pred CCCceEeccCC
Confidence 99999999864
No 106
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.18 E-value=2.3e-05 Score=78.60 Aligned_cols=129 Identities=16% Similarity=0.215 Sum_probs=86.9
Q ss_pred cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhH-------HHHHHHHHH---hcCCCeEEEEccccchHHHHH
Q 020205 102 SQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTA-------GMGIYDAMK---LCKADVSTICLGLAASMGAFL 171 (329)
Q Consensus 102 g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~a-------g~aIyd~Ir---~~~~pV~t~v~G~AASaas~I 171 (329)
|.+++..++...+-+...+. -.-+|+-+|||||..+.. +.+|...+. ....|+++++.|-+.|+|++.
T Consensus 200 G~~~peGyRKAlR~mklAek--f~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAla 277 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEK--FGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALA 277 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHH
Confidence 44666677766666654443 246999999999987522 345655554 456999999999999999998
Q ss_pred HhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHHHHc
Q 020205 172 LAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEY 251 (329)
Q Consensus 172 a~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve~ 251 (329)
++.|| ..+|.+++.+.+-.|-+.+ .+.. +.... .++..+ ..-+|+.++++.
T Consensus 278 lg~aD--~VlMle~A~ysVisPEgaA------------sILw----------kd~~~-A~eAAe----alkitA~dL~~~ 328 (431)
T PLN03230 278 IGCGN--RMLMMENAVYYVASPEACA------------AILW----------KSAAA-APKAAE----ALRITAAELVKL 328 (431)
T ss_pred hhcCC--EEEEecCCEEEecCHHHHH------------HHHh----------ccccc-hHHHHH----HcCCCHHHHHhC
Confidence 88888 5788899988877664210 0100 00001 111112 125799999999
Q ss_pred CCceeecCCC
Q 020205 252 GLVDAVIDDG 261 (329)
Q Consensus 252 GLID~I~~~~ 261 (329)
|+||+|+.+.
T Consensus 329 GiID~II~Ep 338 (431)
T PLN03230 329 GVVDEIVPEP 338 (431)
T ss_pred CCCeEeccCC
Confidence 9999999864
No 107
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.17 E-value=4.1e-05 Score=74.62 Aligned_cols=130 Identities=19% Similarity=0.203 Sum_probs=88.4
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhH-------HHHHHHHHH---hcCCCeEEEEccccchHHHH
Q 020205 101 GSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTA-------GMGIYDAMK---LCKADVSTICLGLAASMGAF 170 (329)
Q Consensus 101 ~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~a-------g~aIyd~Ir---~~~~pV~t~v~G~AASaas~ 170 (329)
.|.+++..++...+-+...+. -.-+|+-.+||||..+.. +.+|...+. ....|+++++.|-|+|+|++
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~--f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAl 206 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAER--FKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGAL 206 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHh
Confidence 366777777777666654443 246999999999988422 345655554 45699999999999999999
Q ss_pred HHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHHHH
Q 020205 171 LLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKE 250 (329)
Q Consensus 171 Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve 250 (329)
.+..+| .++|.|++.+.+-.|-+.+ .+.. ++. ...++..+. .-+|+.++.+
T Consensus 207 a~~~aD--~v~m~~~a~~sVisPEg~a------------~Il~-kd~----------~~a~~aae~----~~~ta~~l~~ 257 (316)
T TIGR00513 207 AIGVGD--KVNMLEYSTYSVISPEGCA------------AILW-KDA----------SKAPKAAEA----MKITAPDLKE 257 (316)
T ss_pred hhccCC--EEEEecCceEEecCHHHHH------------HHhc-cch----------hhHHHHHHH----ccCCHHHHHH
Confidence 887788 5788899999877764320 0100 000 001122221 2368999999
Q ss_pred cCCceeecCCC
Q 020205 251 YGLVDAVIDDG 261 (329)
Q Consensus 251 ~GLID~I~~~~ 261 (329)
.|+||+|+.+.
T Consensus 258 ~G~iD~II~ep 268 (316)
T TIGR00513 258 LGLIDSIIPEP 268 (316)
T ss_pred CCCCeEeccCC
Confidence 99999999864
No 108
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.17 E-value=4.3e-05 Score=72.55 Aligned_cols=134 Identities=22% Similarity=0.209 Sum_probs=92.3
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhH-------HHHHHHHHH---hcCCCeEEEEccccc
Q 020205 96 RIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTA-------GMGIYDAMK---LCKADVSTICLGLAA 165 (329)
Q Consensus 96 rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~a-------g~aIyd~Ir---~~~~pV~t~v~G~AA 165 (329)
++...+|.+++..++...+-+...+. -.-+|+-.+||||..+.. +..|...+. ....|+++++.|-|+
T Consensus 71 ~~~~~~G~~~~~g~rKa~R~~~lA~~--~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~ 148 (256)
T PRK12319 71 NLKRNFGQPHPEGYRKALRLMKQAEK--FGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGG 148 (256)
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcC
Confidence 44445678888888877766665443 246999999999998522 234555544 346899999999999
Q ss_pred hHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecH
Q 020205 166 SMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDA 245 (329)
Q Consensus 166 Saas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta 245 (329)
|+|++.+..+| ..+|.|++.+.+-.|.+.+ .+.. + . ....++..+.+ -+|+
T Consensus 149 gGgA~a~~~~D--~v~m~~~a~~~v~~pe~~a------------~il~-~---------~-~~~a~~aa~~~----~~~a 199 (256)
T PRK12319 149 SGGALALAVAD--QVWMLENTMYAVLSPEGFA------------SILW-K---------D-GSRATEAAELM----KITA 199 (256)
T ss_pred cHHHHHhhcCC--EEEEecCceEEEcCHHHHH------------HHHh-c---------C-cccHHHHHHHc----CCCH
Confidence 99999998888 5788899988877664210 0100 0 0 01122233333 2599
Q ss_pred HHHHHcCCceeecCC
Q 020205 246 WEAKEYGLVDAVIDD 260 (329)
Q Consensus 246 ~EAve~GLID~I~~~ 260 (329)
.++.+.|+||+|+++
T Consensus 200 ~~l~~~g~iD~ii~e 214 (256)
T PRK12319 200 GELLEMGVVDKVIPE 214 (256)
T ss_pred HHHHHCCCCcEecCC
Confidence 999999999999986
No 109
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.16 E-value=3.6e-05 Score=77.54 Aligned_cols=146 Identities=14% Similarity=0.001 Sum_probs=94.0
Q ss_pred cEEEEccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH------------H-------HHHH
Q 020205 96 RIIFLGSQ-----VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG------------M-------GIYD 147 (329)
Q Consensus 96 rII~l~g~-----Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag------------~-------aIyd 147 (329)
++|.|+-+ ++..+...+...|..++.++..+.|+|.=+ |-||++.+. . .+..
T Consensus 53 ~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~ 132 (407)
T PLN02851 53 RAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVY 132 (407)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 46667665 788899999999998887655554544322 446765321 1 1222
Q ss_pred HHHhcCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 020205 148 AMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATG 227 (329)
Q Consensus 148 ~Ir~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG 227 (329)
.|..+++||++.+.|.|..+|.-|+++|| .|++.+++.|.+-....|.. -++.. . .+ +.+..|
T Consensus 133 ~i~~~pKPvIA~v~G~amGGG~gLal~~D--~rVate~a~famPE~~iGl~---PdvG~--s---~~-------L~rl~g 195 (407)
T PLN02851 133 LQGTYLKPNVAIMDGITMGCGAGISIPGM--FRVVTDKTVFAHPEVQMGFH---PDAGA--S---YY-------LSRLPG 195 (407)
T ss_pred HHHhCCCCEEEEEcCEEeeHHHHHHHhCC--EEEEeCCceEecchhccCCC---CCccH--H---HH-------HHHhcC
Confidence 35577899999999999999999999999 68999988876544433321 12110 0 00 111112
Q ss_pred CCHHHHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 228 KPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 228 ~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
... ..++=.+..|+++||++.||+|+++.++
T Consensus 196 ~~g---~~L~LTG~~i~a~eA~~~GLa~~~v~~~ 226 (407)
T PLN02851 196 YLG---EYLALTGQKLNGVEMIACGLATHYCLNA 226 (407)
T ss_pred HHH---HHHHHhCCcCCHHHHHHCCCceeecCHh
Confidence 110 1122224579999999999999999765
No 110
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.16 E-value=3.6e-05 Score=75.16 Aligned_cols=130 Identities=17% Similarity=0.142 Sum_probs=87.7
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchh-------HHHHHHHHH---HhcCCCeEEEEccccchHHHH
Q 020205 101 GSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVT-------AGMGIYDAM---KLCKADVSTICLGLAASMGAF 170 (329)
Q Consensus 101 ~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~-------ag~aIyd~I---r~~~~pV~t~v~G~AASaas~ 170 (329)
.|.+++..++...+.+...+. -.-+|+-.|||||..+. .+.+|...+ -....|+++++.|-|+|+|++
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~--f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAl 209 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANK--FGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGAL 209 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHH
Confidence 355666677766665554443 24699999999998753 234565554 355699999999999999999
Q ss_pred HHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHHHH
Q 020205 171 LLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKE 250 (329)
Q Consensus 171 Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve 250 (329)
.+..+| .++|.+++.+.+-.|-+.+ .++-+...+ ..+..+. .-+|+++.++
T Consensus 210 al~~aD--~V~m~e~a~~sVisPEg~a----------------------~Il~~d~~~-a~~aA~~----~~ita~dL~~ 260 (322)
T CHL00198 210 GIGIGD--SIMMLEYAVYTVATPEACA----------------------AILWKDSKK-SLDAAEA----LKITSEDLKV 260 (322)
T ss_pred hhhcCC--eEEEeCCeEEEecCHHHHH----------------------HHHhcchhh-HHHHHHH----cCCCHHHHHh
Confidence 888888 5788899999887774310 000000000 1112222 3489999999
Q ss_pred cCCceeecCCC
Q 020205 251 YGLVDAVIDDG 261 (329)
Q Consensus 251 ~GLID~I~~~~ 261 (329)
+|+||+|+.+.
T Consensus 261 ~giiD~ii~Ep 271 (322)
T CHL00198 261 LGIIDEIIPEP 271 (322)
T ss_pred CCCCeEeccCC
Confidence 99999999864
No 111
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.15 E-value=2.5e-05 Score=81.47 Aligned_cols=142 Identities=13% Similarity=0.028 Sum_probs=88.2
Q ss_pred ccChhHHHHHHHHHHhhh-hcCCCCCeEEEEe-----CCCCchhHH---------------HH----HHHHHHhcCCCeE
Q 020205 103 QVDDLTADFIISQLLFLD-AEDSKKDIRLFIN-----SPGGSVTAG---------------MG----IYDAMKLCKADVS 157 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~-~~~~~k~I~L~IN-----SPGGsV~ag---------------~a----Iyd~Ir~~~~pV~ 157 (329)
.++..+...+...+..++ .++..+.|+|.=+ |.|+++... .. +.+.|+.+++||+
T Consensus 48 al~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvI 127 (550)
T PRK08184 48 SYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFI 127 (550)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 367778888888888876 4444555555432 456665321 01 3456677899999
Q ss_pred EEEccccchHHHHHHhcCCCCcEEEecC--ceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHh
Q 020205 158 TICLGLAASMGAFLLAAGSKGKRYCMPN--ARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIEL 235 (329)
Q Consensus 158 t~v~G~AASaas~Ia~AGdkg~R~a~Pn--S~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~ 235 (329)
+.|.|.|..+|..|+++|| .|++.++ ++|.+-... ..|-.-.+..... +...+.........
T Consensus 128 AAVnG~a~GGG~~LALacD--~rIas~~~~a~fg~pEv~--~~Gl~P~~gg~~r------------l~~~~~vg~~~A~~ 191 (550)
T PRK08184 128 AAVNGTCAGGGYELALACD--EIVLVDDRSSAVSLPEVP--LLGVLPGTGGLTR------------VTDKRKVRRDLADI 191 (550)
T ss_pred EEECCEeehHHHHHHHhCC--EEEEecCCCcEEEccchh--ccccCCCcchHHH------------hhhhhhcCHHHHHH
Confidence 9999999999999999999 6888876 666553221 0111111100000 11111122333334
Q ss_pred hhcCCceecHHHHHHcCCceeecCC
Q 020205 236 DTDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 236 l~d~d~~lta~EAve~GLID~I~~~ 260 (329)
++-....|+++||+++||||+|...
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~ 216 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKP 216 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCH
Confidence 4333568999999999999999874
No 112
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.15 E-value=4.3e-05 Score=76.85 Aligned_cols=145 Identities=12% Similarity=0.006 Sum_probs=94.4
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH------------H----H---HHHH
Q 020205 97 IIFLGSQ-----VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG------------M----G---IYDA 148 (329)
Q Consensus 97 II~l~g~-----Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag------------~----a---Iyd~ 148 (329)
+|.|+-| ++..+...+...|..+..++..+.|+|.=. |-||++.+- . . +...
T Consensus 49 ~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (401)
T PLN02157 49 TAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYL 128 (401)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHH
Confidence 3445554 788888889989988876655555554322 557776431 0 1 2234
Q ss_pred HHhcCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 020205 149 MKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGK 228 (329)
Q Consensus 149 Ir~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~ 228 (329)
|..+++||++.+.|.|..+|.-|+++|| .|++.+++.|.+-....|. .-++... . .+.+..|.
T Consensus 129 i~~~pkPvIA~v~G~a~GGG~~Lal~cD--~rvate~a~fa~PE~~iGl---~Pd~G~s--~----------~L~rl~G~ 191 (401)
T PLN02157 129 LGTYLKPHVAILNGVTMGGGTGVSIPGT--FRVATDRTIFATPETIIGF---HPDAGAS--F----------NLSHLPGR 191 (401)
T ss_pred HHhCCCCEEEEEeCeEeehhHHHHHhCC--EEEEeCCCEEEChhhhcCC---CCCccHH--H----------HHHHhhhH
Confidence 7788999999999999999999999999 6899999888754443332 1121100 0 01111221
Q ss_pred CHHHHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 229 PVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 229 s~e~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
....++=.+..|+++||++.||||+++..+
T Consensus 192 ---~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~ 221 (401)
T PLN02157 192 ---LGEYLGLTGLKLSGAEMLACGLATHYIRSE 221 (401)
T ss_pred ---HHHHHHHcCCcCCHHHHHHcCCceEEeCHh
Confidence 111222234689999999999999999764
No 113
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.14 E-value=1.7e-05 Score=77.86 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=86.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC-------CCchhHH-------------------HHHHHHHHhcCCCeE
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFINSP-------GGSVTAG-------------------MGIYDAMKLCKADVS 157 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSP-------GGsV~ag-------------------~aIyd~Ir~~~~pV~ 157 (329)
++..+...+...+..++.++..+.|+| .+. |+++.+- ..++..|..+++||+
T Consensus 27 l~~~m~~~L~~~l~~~~~d~~vrvvVl--tg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 104 (342)
T PRK05617 27 LSLEMIRAIDAALDAWEDDDAVAAVVI--EGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYI 104 (342)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEE--EcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 777888888888887775444443433 333 4444221 123456778899999
Q ss_pred EEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 020205 158 TICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTA---GGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIE 234 (329)
Q Consensus 158 t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~---~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~ 234 (329)
+.|.|.|..+|.-|+++|| -|++.++++|++-....|. .|-..- +.+..| . ...
T Consensus 105 AaVnG~a~GgG~~LalacD--~ria~~~a~f~~pe~~lGl~P~~g~~~~------------------L~r~~g-~--~a~ 161 (342)
T PRK05617 105 ALMDGIVMGGGVGISAHGS--HRIVTERTKMAMPETGIGFFPDVGGTYF------------------LSRAPG-A--LGT 161 (342)
T ss_pred EEEcCEEEccHhHHhhhCC--EEEEcCCCEeeCCccccCcCCCccceeE------------------ehhccc-H--HHH
Confidence 9999999999999999999 6899999998764443222 111110 111111 0 112
Q ss_pred hhhcCCceecHHHHHHcCCceeecCCC
Q 020205 235 LDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 235 ~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
.++=.+..++++||+++||||+|++.+
T Consensus 162 ~llltG~~i~A~eA~~~GLv~~vv~~~ 188 (342)
T PRK05617 162 YLALTGARISAADALYAGLADHFVPSA 188 (342)
T ss_pred HHHHcCCCCCHHHHHHcCCcceecCHH
Confidence 222234679999999999999998754
No 114
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.14 E-value=5e-05 Score=80.57 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=87.5
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchh-------HHHHHHHHHH---hcCCCeEEEEccccchHHHH
Q 020205 101 GSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVT-------AGMGIYDAMK---LCKADVSTICLGLAASMGAF 170 (329)
Q Consensus 101 ~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~-------ag~aIyd~Ir---~~~~pV~t~v~G~AASaas~ 170 (329)
.|.+++..++...+.+..++. -.-+|+-.|||||..+. .+.+|+..+. ....|++++|.|-|+|+|++
T Consensus 220 fG~~~peGyRKAlRlmkLAek--fgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAl 297 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGAL 297 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHH
Confidence 445556666666655554433 24699999999998862 3455666565 44699999999999999999
Q ss_pred HHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHHHH
Q 020205 171 LLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKE 250 (329)
Q Consensus 171 Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve 250 (329)
.++.|| .++|.|++.+.+-.|-+. +.++-+.... ..+..+. .-+|+++-++
T Consensus 298 A~g~aD--~VlMle~A~~sVisPEga----------------------AsILwkd~~~-A~eAAe~----lkiTa~dL~~ 348 (762)
T PLN03229 298 AIGCAN--KLLMLENAVFYVASPEAC----------------------AAILWKSAKA-APKAAEK----LRITAQELCR 348 (762)
T ss_pred HhhcCC--EEEEecCCeEEecCHHHH----------------------HHHHhcCccc-HHHHHHH----cCCCHHHHHh
Confidence 998888 578889998776665421 0111110111 1122222 3489999999
Q ss_pred cCCceeecCCC
Q 020205 251 YGLVDAVIDDG 261 (329)
Q Consensus 251 ~GLID~I~~~~ 261 (329)
+|+||+|+.+.
T Consensus 349 lGiiD~IIpEp 359 (762)
T PLN03229 349 LQIADGIIPEP 359 (762)
T ss_pred CCCCeeeccCC
Confidence 99999999864
No 115
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.13 E-value=3.6e-05 Score=72.15 Aligned_cols=138 Identities=21% Similarity=0.129 Sum_probs=94.2
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCchhHHH----------------HHHHHHHhcCCCeEEEEcc
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLF----INSPGGSVTAGM----------------GIYDAMKLCKADVSTICLG 162 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~----INSPGGsV~ag~----------------aIyd~Ir~~~~pV~t~v~G 162 (329)
.++..+...+.+.|..++.++..+.|+|. .=|-|+++..-. .+...|+.+++||++.+.|
T Consensus 28 al~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 107 (257)
T COG1024 28 ALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNG 107 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcc
Confidence 57888889999999988866444444432 224456654411 2566788899999999999
Q ss_pred ccchHHHHHHhcCCCCcEEEecCceEEEeccCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 163 LAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGT-AGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 163 ~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~-~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
.|..+|.-|+++|| -|++.+++.|.+.....| ..|.-.- ..+.+..|... ...++-.+.
T Consensus 108 ~a~GgG~eLal~~D--~ria~~~a~f~~pe~~iGl~Pg~g~~----------------~~l~r~~G~~~--a~~l~ltg~ 167 (257)
T COG1024 108 YALGGGLELALACD--IRIAAEDAKFGLPEVNLGLLPGDGGT----------------QRLPRLLGRGR--AKELLLTGE 167 (257)
T ss_pred eEeechhhhhhcCC--eEEecCCcEecCcccccccCCCCcHH----------------HHHHHhcCHHH--HHHHHHcCC
Confidence 99999999999999 589999999987765433 2221000 11222333322 222333356
Q ss_pred eecHHHHHHcCCceeecCC
Q 020205 242 FMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~ 260 (329)
.++++||++.||||++...
T Consensus 168 ~~~a~eA~~~Glv~~vv~~ 186 (257)
T COG1024 168 PISAAEALELGLVDEVVPD 186 (257)
T ss_pred cCCHHHHHHcCCcCeeeCC
Confidence 7899999999999998874
No 116
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.13 E-value=4.8e-05 Score=76.00 Aligned_cols=138 Identities=17% Similarity=0.122 Sum_probs=88.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHHH-------------------HHHHHHHhcCCCeEEEE
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAGM-------------------GIYDAMKLCKADVSTIC 160 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag~-------------------aIyd~Ir~~~~pV~t~v 160 (329)
++..+...+.+.|..++.++..+.|+|.=+ |-||++.+-. .+...|..+++||++.+
T Consensus 33 Ls~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v 112 (381)
T PLN02988 33 LSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSIL 112 (381)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence 778888899999998876555555544321 4467764311 12235678899999999
Q ss_pred ccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCC
Q 020205 161 LGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRD 240 (329)
Q Consensus 161 ~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d 240 (329)
.|.|..+|.-|+++|| .|++.++++|.+-....|. .-++... .-+. ++....+ ..++=-+
T Consensus 113 ~G~a~GGG~~Lal~~D--~rvate~a~f~mPE~~iGl---~Pd~G~s-~~L~----rl~G~~~----------~~l~LTG 172 (381)
T PLN02988 113 NGIVMGGGAGVSVHGR--FRIATENTVFAMPETALGL---FPDVGAS-YFLS----RLPGFFG----------EYVGLTG 172 (381)
T ss_pred cCeEeehhhHHhhcCC--eEEEcCCcEEeChhhhcCc---CCCccHH-HHHH----HHHHHHH----------HHHHHcC
Confidence 9999999999999999 6899999887653332222 1121110 0011 1111111 1122224
Q ss_pred ceecHHHHHHcCCceeecCCC
Q 020205 241 NFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 241 ~~lta~EAve~GLID~I~~~~ 261 (329)
..+++.||++.||+|+++..+
T Consensus 173 ~~i~a~eA~~~GLv~~vv~~~ 193 (381)
T PLN02988 173 ARLDGAEMLACGLATHFVPST 193 (381)
T ss_pred CCCCHHHHHHcCCceEecCHh
Confidence 578999999999999999754
No 117
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.11 E-value=4.7e-05 Score=81.44 Aligned_cols=139 Identities=18% Similarity=0.133 Sum_probs=90.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCchhH----------------HHHHHHHHHhcCCCeEEEEcc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI-----NSPGGSVTA----------------GMGIYDAMKLCKADVSTICLG 162 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-----NSPGGsV~a----------------g~aIyd~Ir~~~~pV~t~v~G 162 (329)
++..+...+.+.|..++.++..+.|+|.= =|-|+++.+ ...++..|..+++||++.|.|
T Consensus 26 l~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG 105 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHG 105 (699)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 67788888888888887654444444321 144556543 123566788899999999999
Q ss_pred ccchHHHHHHhcCCCCcEEEecC--ceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCC
Q 020205 163 LAASMGAFLLAAGSKGKRYCMPN--ARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRD 240 (329)
Q Consensus 163 ~AASaas~Ia~AGdkg~R~a~Pn--S~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d 240 (329)
.|.++|.-++++|| .|++.++ +.|++.....|.. -...- ...+.+..|.. ...+++-.+
T Consensus 106 ~a~GgG~~LaLacD--~ria~~~~~a~fg~pev~lGl~---p~~g~------------~~~L~r~vG~~--~A~~llltG 166 (699)
T TIGR02440 106 ACLGGGLELALACH--SRVCSDDDKTVLGLPEVQLGLL---PGSGG------------TQRLPRLIGVS--TALDMILTG 166 (699)
T ss_pred EeecHHHHHHHhCC--EEEEcCCCCcEEechhhcccCC---CCccH------------HHHHHHhcCHH--HHHHHHHcC
Confidence 99999999999999 6888876 5666554433321 00000 00122222322 223444445
Q ss_pred ceecHHHHHHcCCceeecCCC
Q 020205 241 NFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 241 ~~lta~EAve~GLID~I~~~~ 261 (329)
..++++||+++||||+|...+
T Consensus 167 ~~~~a~eA~~~GLV~~vv~~~ 187 (699)
T TIGR02440 167 KQLRAKQALKLGLVDDVVPQS 187 (699)
T ss_pred CcCCHHHHHhCCCCcEecChh
Confidence 679999999999999999754
No 118
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.10 E-value=5e-05 Score=75.68 Aligned_cols=145 Identities=19% Similarity=0.135 Sum_probs=90.9
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH----------H-------HHHHHHH
Q 020205 97 IIFLGSQ-----VDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG----------M-------GIYDAMK 150 (329)
Q Consensus 97 II~l~g~-----Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag----------~-------aIyd~Ir 150 (329)
+|.|+-+ ++..+...+...|..++.++..+.|+|.= =|-||++... . .+...|.
T Consensus 23 ~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 102 (379)
T PLN02874 23 VITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIH 102 (379)
T ss_pred EEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 3455554 78888888888888887654445444421 1335554321 0 1123466
Q ss_pred hcCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 020205 151 LCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPV 230 (329)
Q Consensus 151 ~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~ 230 (329)
.+++||++.|.|.|..+|.-|+++|| .|++.+++.|.+-....|.. -+.... .. +.+..|. .
T Consensus 103 ~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~iGl~---p~~g~~-----~~-------L~rl~g~-~ 164 (379)
T PLN02874 103 TYKKTQVALVHGLVMGGGAGLMVPMK--FRVVTEKTVFATPEASVGFH---TDCGFS-----YI-------LSRLPGH-L 164 (379)
T ss_pred hCCCCEEEEecCeEEecHHHHHHhCC--eEEEeCCeEEeccccccCcC---CChhHH-----HH-------HHhhhHH-H
Confidence 78999999999999999999999999 68999999887644433321 121110 00 1111111 0
Q ss_pred HHHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 231 QQIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 231 e~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
...++=.+..++++||+++||||+|+..+
T Consensus 165 --a~~l~ltG~~i~a~eA~~~GLv~~vv~~~ 193 (379)
T PLN02874 165 --GEYLALTGARLNGKEMVACGLATHFVPSE 193 (379)
T ss_pred --HHHHHHcCCcccHHHHHHcCCccEEeCHH
Confidence 11222224579999999999999998754
No 119
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.07 E-value=3.1e-05 Score=73.90 Aligned_cols=138 Identities=21% Similarity=0.134 Sum_probs=97.8
Q ss_pred ccChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCchhHH-------------HHHHHHHHhcCCCeEEEEccccc
Q 020205 103 QVDDLTADFIISQLLFLDAEDSKKDIRLFI----NSPGGSVTAG-------------MGIYDAMKLCKADVSTICLGLAA 165 (329)
Q Consensus 103 ~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I----NSPGGsV~ag-------------~aIyd~Ir~~~~pV~t~v~G~AA 165 (329)
.++..+...+.+++..++.++....|+|+= =|-|.|+.+. +.-++.+..+++||++-+.|.|-
T Consensus 60 al~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~Al 139 (290)
T KOG1680|consen 60 ALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFAL 139 (290)
T ss_pred cccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceee
Confidence 377788889999999988877666666542 1223333222 23455666788999999999999
Q ss_pred hHHHHHHhcCCCCcEEEecCceEEEeccCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCce
Q 020205 166 SMGAFLLAAGSKGKRYCMPNARVMIHQPLGTA---GGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNF 242 (329)
Q Consensus 166 Saas~Ia~AGdkg~R~a~PnS~imIHqp~~~~---~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~ 242 (329)
.+|.-+++.|| -|||.+++.|++-++..|. +|=.. .+.+.-|.+ ...+++-..+.
T Consensus 140 gGG~ELalmCD--irva~~~Akfg~~~~~~Gi~p~~GGT~------------------rl~r~vG~s--~Ale~~ltg~~ 197 (290)
T KOG1680|consen 140 GGGLELALMCD--IRVAGEGAKFGFFEIRMGIIPSWGGTQ------------------RLPRIVGKS--RALEMILTGRR 197 (290)
T ss_pred ccchhhhhhcc--eEeccCCCeecccccccCCccCCCchh------------------hHHHHhChH--HHHHHHHhcCc
Confidence 99999999999 5999999999987765442 22111 112233433 23455555678
Q ss_pred ecHHHHHHcCCceeecCCCC
Q 020205 243 MDAWEAKEYGLVDAVIDDGK 262 (329)
Q Consensus 243 lta~EAve~GLID~I~~~~~ 262 (329)
++++||++.|||++|...+.
T Consensus 198 ~~AqeA~~~GlVn~Vvp~~~ 217 (290)
T KOG1680|consen 198 LGAQEAKKIGLVNKVVPSGD 217 (290)
T ss_pred ccHHHHHhCCceeEeecchh
Confidence 99999999999999998653
No 120
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.06 E-value=8.9e-05 Score=79.52 Aligned_cols=138 Identities=19% Similarity=0.096 Sum_probs=92.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhH------------------HHHHHHHHHhcCCCeEEEEc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTA------------------GMGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~a------------------g~aIyd~Ir~~~~pV~t~v~ 161 (329)
++..+...+.+.|..+..++..+.|+|.=+ |-|+++.+ +..+++.|..+++||++.+.
T Consensus 31 l~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~ 110 (714)
T TIGR02437 31 FDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAIN 110 (714)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 677888888888888876655555554321 33444421 23466778889999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|.-|+++|| .|++.+++.|++-....|.. -.+.-. . .+.+..|... ..+++-.+.
T Consensus 111 G~alGGGleLalacD--~ria~~~a~fglPEv~lGl~---Pg~Ggt----~--------rL~rliG~~~--A~~llltG~ 171 (714)
T TIGR02437 111 GIALGGGCECVLATD--FRIADDTAKIGLPETKLGIM---PGFGGT----V--------RLPRVIGADN--ALEWIASGK 171 (714)
T ss_pred CeeecHHHHHHHhCC--EEEEeCCCEEecchhhcCCC---CCccHH----H--------HHHHHhCHHH--HHHHHHcCC
Confidence 999999999999999 69999999988654433321 010000 0 0122223322 233343456
Q ss_pred eecHHHHHHcCCceeecCC
Q 020205 242 FMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~ 260 (329)
.++++||+++||||+|...
T Consensus 172 ~~~A~eA~~~GLvd~vv~~ 190 (714)
T TIGR02437 172 ENRAEDALKVGAVDAVVTA 190 (714)
T ss_pred cCCHHHHHHCCCCcEeeCh
Confidence 7999999999999999864
No 121
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.03 E-value=7.2e-05 Score=80.20 Aligned_cols=139 Identities=20% Similarity=0.123 Sum_probs=91.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCchhHH------------------HHHHHHHHhcCCCeEEEEc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN----SPGGSVTAG------------------MGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN----SPGGsV~ag------------------~aIyd~Ir~~~~pV~t~v~ 161 (329)
++..+...+.+.+..++.++..+.|+|.=+ |-|+++.+- ..+++.|..+++||++.|.
T Consensus 31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 110 (715)
T PRK11730 31 LDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAIN 110 (715)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 677888888888888776544455544211 345555321 1245567788999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDN 241 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~ 241 (329)
|.|..+|.-|+++|| .|++.++++|++-....|.. -+.... ..+.+..|. ....+++-...
T Consensus 111 G~a~GgG~~LAlacD--~ria~~~a~f~~pe~~lGl~---p~~g~~------------~~L~rlvG~--~~A~~llltG~ 171 (715)
T PRK11730 111 GYALGGGCECVLATD--YRVASPDARIGLPETKLGIM---PGFGGT------------VRLPRLIGA--DNALEWIAAGK 171 (715)
T ss_pred CEeehHHHHHHHhCC--EEEEcCCCEEeCchhhcCCC---CCchHH------------HHHHHhcCH--HHHHHHHHcCC
Confidence 999999999999999 69999999987644433321 111100 011222332 22334444456
Q ss_pred eecHHHHHHcCCceeecCCC
Q 020205 242 FMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 242 ~lta~EAve~GLID~I~~~~ 261 (329)
.++++||++.||||+|+..+
T Consensus 172 ~~~A~eA~~~GLv~~vv~~~ 191 (715)
T PRK11730 172 DVRAEDALKVGAVDAVVAPE 191 (715)
T ss_pred cCCHHHHHHCCCCeEecCHH
Confidence 79999999999999998753
No 122
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.99 E-value=8e-05 Score=77.61 Aligned_cols=141 Identities=15% Similarity=0.078 Sum_probs=85.8
Q ss_pred cChhHHHHHHHHHHhhh-hcCCCCCeEEEEe-----CCCCchhHH-------------------HHHHHHHHhcCCCeEE
Q 020205 104 VDDLTADFIISQLLFLD-AEDSKKDIRLFIN-----SPGGSVTAG-------------------MGIYDAMKLCKADVST 158 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~-~~~~~k~I~L~IN-----SPGGsV~ag-------------------~aIyd~Ir~~~~pV~t 158 (329)
++..+...+.+.|..++ .++..+.|+|.-. |.|+++.+. ..+.+.|+.+++||++
T Consensus 45 l~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIA 124 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLA 124 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 66777788888888776 4444455555432 556665431 1244556788999999
Q ss_pred EEccccchHHHHHHhcCCCCcEEEecC--ceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Q 020205 159 ICLGLAASMGAFLLAAGSKGKRYCMPN--ARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELD 236 (329)
Q Consensus 159 ~v~G~AASaas~Ia~AGdkg~R~a~Pn--S~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l 236 (329)
.|.|.|..+|.-|+++|| -|++.++ ++|.+-... ..|-.-.+..... +.. .+..| ......+
T Consensus 125 AVnG~a~GGG~~LALacD--~rvAs~~a~a~f~~pEv~--~lGl~P~~gg~~~-l~~---------~~~vg--~~~A~~l 188 (546)
T TIGR03222 125 AVNGTCAGGGYELALACD--EIMLVDDRSSSVSLPEVP--LLGVLPGTGGLTR-VTD---------KRRVR--RDHADIF 188 (546)
T ss_pred EECCEeehHHHHHHHhCC--EEEEecCCCcEEEccchh--ccCcCCccchhhh-ccc---------cchhC--HHHHHHH
Confidence 999999999999999999 6888876 566543221 0111111100000 000 01122 2222233
Q ss_pred hcCCceecHHHHHHcCCceeecCC
Q 020205 237 TDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 237 ~d~d~~lta~EAve~GLID~I~~~ 260 (329)
+-...-|+++||+++||||+|++.
T Consensus 189 lltG~~i~A~eA~~~GLV~~vv~~ 212 (546)
T TIGR03222 189 CTIEEGVRGKRAKEWRLVDEVVKP 212 (546)
T ss_pred HHcCCCccHHHHHHcCCceEEeCh
Confidence 323456899999999999999875
No 123
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.98 E-value=0.00015 Score=77.77 Aligned_cols=139 Identities=17% Similarity=0.120 Sum_probs=90.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCchhH----------------HHHHHHHHHhcCCCeEEEEcc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFI-----NSPGGSVTA----------------GMGIYDAMKLCKADVSTICLG 162 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-----NSPGGsV~a----------------g~aIyd~Ir~~~~pV~t~v~G 162 (329)
++..+...+...+..++.++..+.|+|.= =|-|+++.+ ...+++.|..+++||++.+.|
T Consensus 31 l~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 110 (708)
T PRK11154 31 LKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHG 110 (708)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 67778888888888887654444444321 133455422 123567788899999999999
Q ss_pred ccchHHHHHHhcCCCCcEEEecCc--eEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCC
Q 020205 163 LAASMGAFLLAAGSKGKRYCMPNA--RVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRD 240 (329)
Q Consensus 163 ~AASaas~Ia~AGdkg~R~a~PnS--~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d 240 (329)
.|..+|.-|+++|| .|++.+++ .|++.....|.. -...- ...+.+..|.. ...+++-.+
T Consensus 111 ~a~GgG~~LalacD--~ria~~~a~a~fg~pe~~lGl~---p~~gg------------~~~L~r~vG~~--~A~~llltG 171 (708)
T PRK11154 111 ACLGGGLELALACH--YRVCTDDPKTVLGLPEVQLGLL---PGSGG------------TQRLPRLIGVS--TALDMILTG 171 (708)
T ss_pred eeechHHHHHHhCC--EEEEeCCCCceEeCccccCCCC---CCccH------------HhHHHhhcCHH--HHHHHHHhC
Confidence 99999999999999 68999875 676555433321 11100 01122233332 233444446
Q ss_pred ceecHHHHHHcCCceeecCCC
Q 020205 241 NFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 241 ~~lta~EAve~GLID~I~~~~ 261 (329)
..++++||+++||||+++..+
T Consensus 172 ~~i~a~eA~~~GLv~~vv~~~ 192 (708)
T PRK11154 172 KQLRAKQALKLGLVDDVVPHS 192 (708)
T ss_pred CcCCHHHHHHCCCCcEecChH
Confidence 679999999999999998753
No 124
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.87 E-value=0.00017 Score=77.64 Aligned_cols=136 Identities=17% Similarity=0.151 Sum_probs=89.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe------CCCCchhH----------------HHHHHHHHHhcCCCeEEEEc
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFIN------SPGGSVTA----------------GMGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN------SPGGsV~a----------------g~aIyd~Ir~~~~pV~t~v~ 161 (329)
++..+...+.+.|..++.++..+.|+| +. |-|+++.+ ...+++.|..+++||++.+.
T Consensus 38 l~~~~~~~L~~al~~~~~d~~vr~vVv-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~ 116 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWTNEAIKSAVL-ISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAIS 116 (737)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCEEEEE-EECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 667778888888888775444443332 33 33455432 23466778889999999999
Q ss_pred cccchHHHHHHhcCCCCcEEEecCc--eEEEeccCCCC-CCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhc
Q 020205 162 GLAASMGAFLLAAGSKGKRYCMPNA--RVMIHQPLGTA-GGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTD 238 (329)
Q Consensus 162 G~AASaas~Ia~AGdkg~R~a~PnS--~imIHqp~~~~-~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d 238 (329)
|.|..+|.-|+++|| .|++.+++ .|++.....|. -|--. . ..+.+..|.. ...+++-
T Consensus 117 G~a~GgG~eLALacD--~ria~~~a~a~fglpEv~lGl~Pg~Gg--------t--------~rLprliG~~--~A~~l~l 176 (737)
T TIGR02441 117 GSCLGGGLELALACH--YRIATKDRKTLLGLPEVMLGLLPGAGG--------T--------QRLPKLTGVP--AALDMML 176 (737)
T ss_pred CEeecHHHHHHHhCC--EEEEcCCCCCeEecchhhhCCCCCccH--------h--------hhHHHhhCHH--HHHHHHH
Confidence 999999999999999 69999874 56654433221 11000 0 0112223322 2233444
Q ss_pred CCceecHHHHHHcCCceeecCC
Q 020205 239 RDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 239 ~d~~lta~EAve~GLID~I~~~ 260 (329)
.+..++++||++.||||+|.+.
T Consensus 177 tG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 177 TGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred cCCcCCHHHHHHCCCCeEecCC
Confidence 4678899999999999999874
No 125
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.75 E-value=0.00075 Score=63.52 Aligned_cols=131 Identities=19% Similarity=0.152 Sum_probs=82.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCch----------hHHHHHHHHHH---hcCCCeEEEEccccchHHHH
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSV----------TAGMGIYDAMK---LCKADVSTICLGLAASMGAF 170 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV----------~ag~aIyd~Ir---~~~~pV~t~v~G~AASaas~ 170 (329)
++-..+......+...-.++..-+|+..||+||=.+ .+.-.+...+. ..+.|+++++.|.+.|+|++
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 444445555555554311224579999999999764 23332334444 44599999999999998887
Q ss_pred HHhc-CCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhc--CCceecHHH
Q 020205 171 LLAA-GSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTD--RDNFMDAWE 247 (329)
Q Consensus 171 Ia~A-Gdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d--~d~~lta~E 247 (329)
-... +| ..++.|++.+.+-.|-+. ++.+.++.+++.+... ...-.+++.
T Consensus 125 amg~~ad--~v~Alp~A~i~vm~~e~a--------------------------a~I~~~~~~~~~e~a~~~~~~a~~~~~ 176 (238)
T TIGR03134 125 AHGLQAD--RIIALPGAMVHVMDLESM--------------------------ARVTKRSVEELEALAKSSPVFAPGIEN 176 (238)
T ss_pred HHccCcC--eEEEcCCcEEEecCHHHH--------------------------HHHHccCHhHHHHHHHhhhhhccCHHH
Confidence 6642 55 578899998876655321 1111122233333222 124567889
Q ss_pred HHHcCCceeecCCCC
Q 020205 248 AKEYGLVDAVIDDGK 262 (329)
Q Consensus 248 Ave~GLID~I~~~~~ 262 (329)
+.+.|+||+|++...
T Consensus 177 ~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 177 FVKLGGVHALLDVAD 191 (238)
T ss_pred HHhCCCccEEeCCCC
Confidence 999999999998654
No 126
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.58 E-value=0.0012 Score=68.87 Aligned_cols=141 Identities=15% Similarity=0.056 Sum_probs=87.5
Q ss_pred cChhHHHHHHHHHHhhhhc-CCCCCeEEEEe-----CCCCchh-----------HH----HHHHHHHHhcCCCeEEEE-c
Q 020205 104 VDDLTADFIISQLLFLDAE-DSKKDIRLFIN-----SPGGSVT-----------AG----MGIYDAMKLCKADVSTIC-L 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~-~~~k~I~L~IN-----SPGGsV~-----------ag----~aIyd~Ir~~~~pV~t~v-~ 161 (329)
++..+...+...+..++.+ +....|+|.=. |-|+++. +. ..++..|..+++||++.| .
T Consensus 295 l~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~ 374 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEP 374 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 6677778888888877643 22333332211 2233331 10 124567888899999999 8
Q ss_pred cccchHH-HHHHhcCCCCcEEE-------ecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHc-CCCHHH
Q 020205 162 GLAASMG-AFLLAAGSKGKRYC-------MPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRAT-GKPVQQ 232 (329)
Q Consensus 162 G~AASaa-s~Ia~AGdkg~R~a-------~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~t-G~s~e~ 232 (329)
|.|..+| .=|+++|| -|++ .+++.|++-....|..-...-. ..+.+.. |.....
T Consensus 375 G~a~GgG~~eLalacD--~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~---------------~~L~~~v~G~~~a~ 437 (546)
T TIGR03222 375 GSCFAGTLAELAFAAD--RSYMLAFPDNNDPEPAITLSELNFGLYPMVNGL---------------SRLATRFYAEPAPV 437 (546)
T ss_pred CeEeHHHHHHHHHhCc--eeeecCCCCCCCCCCEEeCCccccccCCCcCcH---------------HHHHHHhcCchhHH
Confidence 9999999 99999999 5888 7999987655443322110000 0123333 443332
Q ss_pred HHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 233 IELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 233 I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
-.+++-....++++||+++|||++|.+.+
T Consensus 438 ~~~~~ltg~~i~A~eA~~~Glv~~vv~~~ 466 (546)
T TIGR03222 438 AAVRDKIGQALDAEEAERLGLVTAAPDDI 466 (546)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcccccCch
Confidence 22222234679999999999999998754
No 127
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.51 E-value=0.0009 Score=69.95 Aligned_cols=141 Identities=18% Similarity=0.108 Sum_probs=85.7
Q ss_pred cChhHHHHHHHHHHhhhh-cCCCCCeEEEE-----eCCCCchh-----------HH----HHHHHHHHhcCCCeEEEEc-
Q 020205 104 VDDLTADFIISQLLFLDA-EDSKKDIRLFI-----NSPGGSVT-----------AG----MGIYDAMKLCKADVSTICL- 161 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~-~~~~k~I~L~I-----NSPGGsV~-----------ag----~aIyd~Ir~~~~pV~t~v~- 161 (329)
++..+...+...+..++. ++..+.|+|.= =|-|+++. .. ..++..|..+++||++.|.
T Consensus 299 l~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~ 378 (550)
T PRK08184 299 WPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEP 378 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 567777888888877764 23334344321 12234421 00 1244567778899999997
Q ss_pred cccchHH-HHHHhcCCCCcEEEe-------cCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH
Q 020205 162 GLAASMG-AFLLAAGSKGKRYCM-------PNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRA-TGKPVQQ 232 (329)
Q Consensus 162 G~AASaa-s~Ia~AGdkg~R~a~-------PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~-tG~s~e~ 232 (329)
|.|..+| .-|+++|| -|++. +++.|++-....|..-...-. ..+.++ .|.....
T Consensus 379 G~a~GgG~~eLalacD--~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~---------------~~L~r~~vG~~~A~ 441 (550)
T PRK08184 379 GSCFAGTLAELALAAD--RSYMLALPDDNDPAPAITLSALNFGLYPMVNGL---------------SRLARRFYGEPDPL 441 (550)
T ss_pred CceehhHHHHHHHHCC--hhhhcCCCCCCCCCCEEECccccccCCCCCCcH---------------HHhHHHhcChHHHH
Confidence 9999999 99999999 58999 999988655443321100000 012222 2433221
Q ss_pred HHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 233 IELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 233 I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
-..++-....++++||+++||||+|.+++
T Consensus 442 ~~~l~~tg~~i~A~eA~~~GLv~~vv~~~ 470 (550)
T PRK08184 442 AAVRAKIGQPLDADAAEELGLVTAAPDDI 470 (550)
T ss_pred HHHHHHhCCcCCHHHHHHcCCcccccChH
Confidence 11111224679999999999999998754
No 128
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.41 E-value=0.0013 Score=68.16 Aligned_cols=139 Identities=22% Similarity=0.267 Sum_probs=90.4
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC----------chhHHHHHHHHHHhcCCCeEEEEccccchHHHH
Q 020205 101 GSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGG----------SVTAGMGIYDAMKLCKADVSTICLGLAASMGAF 170 (329)
Q Consensus 101 ~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGG----------sV~ag~aIyd~Ir~~~~pV~t~v~G~AASaas~ 170 (329)
+|.++...++.+.+.+...+. -.-+|+..+||||= .+..+..+..++-....|+++++.|.|+++|++
T Consensus 328 ~G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred cCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 577889899988887776543 35799999999996 345566666677777899999999999998766
Q ss_pred HHhc----CCCCcEEEecCceEEEeccCCCCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecH
Q 020205 171 LLAA----GSKGKRYCMPNARVMIHQPLGTAGG-KATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDA 245 (329)
Q Consensus 171 Ia~A----Gdkg~R~a~PnS~imIHqp~~~~~G-~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta 245 (329)
.+++ +| ..++.|++.+.+-.|.+...= -..++.. .++-.. .. .+++.+..+ .+.++
T Consensus 406 am~~~~~~~d--~~~a~p~a~~~v~~pe~a~~i~~~~~l~~-~~~~~~---~~-----------~~~~~~~~~--~~~~~ 466 (512)
T TIGR01117 406 AMCSKHLGAD--QVYAWPTAEIAVMGPAGAANIIFRKDIKE-AKDPAA---TR-----------KQKIAEYRE--EFANP 466 (512)
T ss_pred HhccccCCCC--EEEEcCCCeEeecCHHHHHHHHhhhhccc-ccCHHH---HH-----------HHHHHHHHH--hhcCH
Confidence 5543 45 578889999988777532100 0001000 000000 00 111222222 35688
Q ss_pred HHHHHcCCceeecCC
Q 020205 246 WEAKEYGLVDAVIDD 260 (329)
Q Consensus 246 ~EAve~GLID~I~~~ 260 (329)
..+.+.|+||.|++.
T Consensus 467 ~~~a~~g~vD~VI~P 481 (512)
T TIGR01117 467 YKAAARGYVDDVIEP 481 (512)
T ss_pred HHHHhcCCCCeeECh
Confidence 899999999999974
No 129
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.18 E-value=0.0074 Score=58.49 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=68.7
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHH-------HHHHH---HhcCCCeEEEEccccchHH
Q 020205 99 FLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMG-------IYDAM---KLCKADVSTICLGLAASMG 168 (329)
Q Consensus 99 ~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~a-------Iyd~I---r~~~~pV~t~v~G~AASaa 168 (329)
|++|.++...++.+.+.+...... .-+++...+|+|....++.. +..++ .....|.++++.|-|+.++
T Consensus 132 f~gGS~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~ 209 (292)
T PRK05654 132 FMGGSMGSVVGEKIVRAVERAIEE--KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 209 (292)
T ss_pred cccCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHH
Confidence 468889999999998888765542 46889999999998776653 22233 2335899999999999887
Q ss_pred HHHHh-cCCCCcEEEecCceEEEecc
Q 020205 169 AFLLA-AGSKGKRYCMPNARVMIHQP 193 (329)
Q Consensus 169 s~Ia~-AGdkg~R~a~PnS~imIHqp 193 (329)
++.+. .+| -+++.|++.+++..|
T Consensus 210 aas~a~~~D--~iia~p~A~ig~aGp 233 (292)
T PRK05654 210 SASFAMLGD--IIIAEPKALIGFAGP 233 (292)
T ss_pred HHHHHHcCC--EEEEecCcEEEecCH
Confidence 77644 477 477889999988766
No 130
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.15 E-value=0.0064 Score=58.71 Aligned_cols=125 Identities=12% Similarity=0.163 Sum_probs=88.2
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHH-------HH---HHhcCCCeEEEEccccchHH
Q 020205 99 FLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIY-------DA---MKLCKADVSTICLGLAASMG 168 (329)
Q Consensus 99 ~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIy-------d~---Ir~~~~pV~t~v~G~AASaa 168 (329)
|++|.+.....+.+.+.+..+.. ..-+|++.++|+|....++.... .+ +.....|.++++.|-|+.++
T Consensus 131 f~gGSmg~~~geKi~r~~e~A~~--~~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~ 208 (285)
T TIGR00515 131 FMGGSMGSVVGEKFVRAIEKALE--DNCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGV 208 (285)
T ss_pred ccCCCccHHHHHHHHHHHHHHHH--cCCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHH
Confidence 45788999999999888876553 24699999999999876665322 22 22335899999999999887
Q ss_pred HHHH-hcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHH
Q 020205 169 AFLL-AAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWE 247 (329)
Q Consensus 169 s~Ia-~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~E 247 (329)
++.+ +.+| -+++.|++.+++..|. ++.+.+|. ++ . +-+-+++-
T Consensus 209 aas~a~~~D--~iia~p~A~ig~aGpr--------------------------Vie~ti~e---~l----p-e~~q~ae~ 252 (285)
T TIGR00515 209 SASFAMLGD--LNIAEPKALIGFAGPR--------------------------VIEQTVRE---KL----P-EGFQTSEF 252 (285)
T ss_pred HHHHHhCCC--EEEEECCeEEEcCCHH--------------------------HHHHHhcC---cc----c-hhcCCHHH
Confidence 7766 5787 4778899999876662 01112221 11 1 22557777
Q ss_pred HHHcCCceeecCCC
Q 020205 248 AKEYGLVDAVIDDG 261 (329)
Q Consensus 248 Ave~GLID~I~~~~ 261 (329)
+.+.|+||.|++..
T Consensus 253 ~~~~G~vD~iv~~~ 266 (285)
T TIGR00515 253 LLEHGAIDMIVHRP 266 (285)
T ss_pred HHhCCCCcEEECcH
Confidence 88999999998753
No 131
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=96.88 E-value=0.008 Score=57.74 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=70.6
Q ss_pred EEccccChhHHHHHHHHHHhhhhcC---CCCCeEEEEeCCCCchhHHH-------HHHHHHHhcC--CCeEEEEccc--c
Q 020205 99 FLGSQVDDLTADFIISQLLFLDAED---SKKDIRLFINSPGGSVTAGM-------GIYDAMKLCK--ADVSTICLGL--A 164 (329)
Q Consensus 99 ~l~g~Id~~~a~~ii~~L~~l~~~~---~~k~I~L~INSPGGsV~ag~-------aIyd~Ir~~~--~pV~t~v~G~--A 164 (329)
|.+|.+.+.....+...+..+..++ ..-++++.++|.|+.+.++. .|+..+-.++ .|+++++.|- |
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc 149 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGC 149 (274)
T ss_pred ccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCc
Confidence 4678888888888888777554322 22489999999999987644 3443433333 8999999999 8
Q ss_pred chHHHHHHhcCCCCcEEEecCceEEEecc
Q 020205 165 ASMGAFLLAAGSKGKRYCMPNARVMIHQP 193 (329)
Q Consensus 165 ASaas~Ia~AGdkg~R~a~PnS~imIHqp 193 (329)
+.+++++++.+| ..+|.|.+++++..|
T Consensus 150 ~GG~a~~a~l~D--~vim~~~a~i~~aGP 176 (274)
T TIGR03133 150 FGGMGIAAGLCS--YLIMTEEGRLGLSGP 176 (274)
T ss_pred chHHHHHHhcCC--EEEEeCCcEEeccCH
Confidence 899999999999 578889988887665
No 132
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.73 E-value=0.0042 Score=64.07 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=66.0
Q ss_pred cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CchhHHHHHHHHHHhcCCCeEEEEccccchHHHHH
Q 020205 102 SQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPG----------GSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFL 171 (329)
Q Consensus 102 g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPG----------GsV~ag~aIyd~Ir~~~~pV~t~v~G~AASaas~I 171 (329)
|.++...+....+-+...+.. .-+|+..+|+|| |.+..+..+.+++-.+..|+++++.|.+.++|++.
T Consensus 308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a 385 (493)
T PF01039_consen 308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA 385 (493)
T ss_dssp GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence 678888888887777766542 359999999999 55677888999999999999999999999988876
Q ss_pred HhcCCC--CcEEEecCceEEEeccC
Q 020205 172 LAAGSK--GKRYCMPNARVMIHQPL 194 (329)
Q Consensus 172 a~AGdk--g~R~a~PnS~imIHqp~ 194 (329)
+++... ...++.|++.+.+..|.
T Consensus 386 m~~~~~~~~~~~Awp~a~~~vm~~e 410 (493)
T PF01039_consen 386 MCGRGYGPDFVFAWPTAEIGVMGPE 410 (493)
T ss_dssp TTGGGGTTSEEEEETT-EEESS-HH
T ss_pred hcccccchhhhhhhhcceeeecChh
Confidence 665511 14678899988876654
No 133
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.72 E-value=0.0098 Score=57.87 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=71.4
Q ss_pred EEccccChhHHHHHHHHHHhhhhcC---CCCCeEEEEeCCCCchhHHH-------HHHHHHHhcC--CCeEEEEccc--c
Q 020205 99 FLGSQVDDLTADFIISQLLFLDAED---SKKDIRLFINSPGGSVTAGM-------GIYDAMKLCK--ADVSTICLGL--A 164 (329)
Q Consensus 99 ~l~g~Id~~~a~~ii~~L~~l~~~~---~~k~I~L~INSPGGsV~ag~-------aIyd~Ir~~~--~pV~t~v~G~--A 164 (329)
|++|.+.+.....+...+..+.... ..-++++.++|.|+.+.++. .|+..+..++ .|+++++.|. |
T Consensus 79 f~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc 158 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGC 158 (301)
T ss_pred ccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 5688898888999988877554321 02589999999999976543 3444433333 8999999998 9
Q ss_pred chHHHHHHhcCCCCcEEEecCceEEEecc
Q 020205 165 ASMGAFLLAAGSKGKRYCMPNARVMIHQP 193 (329)
Q Consensus 165 ASaas~Ia~AGdkg~R~a~PnS~imIHqp 193 (329)
+.+++++++.|| .++|.+++++++..|
T Consensus 159 ~GG~a~~a~l~D--~iIm~~~a~iglaGP 185 (301)
T PRK07189 159 FGGMGIAAALCS--YLIVSEEGRLGLSGP 185 (301)
T ss_pred cHHHHHHHhcCC--EEEEECCcEEeccCH
Confidence 999999999999 578889999987766
No 134
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.49 E-value=0.0077 Score=58.17 Aligned_cols=108 Identities=21% Similarity=0.341 Sum_probs=76.4
Q ss_pred CCCeEEEEeCCCCch-------hHHHHHHHHHHh---cCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccC
Q 020205 125 KKDIRLFINSPGGSV-------TAGMGIYDAMKL---CKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPL 194 (329)
Q Consensus 125 ~k~I~L~INSPGGsV-------~ag~aIyd~Ir~---~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~ 194 (329)
.-+|+.+||+||-.. -.+.+|..-|.. ++.||+++|.|-..|+|++-..-|| +.+|.-||++.+-.|-
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad--~V~mle~s~ySVisPE 227 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVAD--RVLMLENSTYSVISPE 227 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHH--HHHHHHhceeeecChh
Confidence 469999999999774 356777766654 4689999999999999999888898 4677789988877775
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 195 GTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 195 ~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
+- ++=+ ++ -+.+.. +..+.|. +|+.+-+++||||.|+.+.
T Consensus 228 G~----AsIL---Wk---------------D~~ka~-eAAe~mk----ita~dLk~lgiID~II~Ep 267 (317)
T COG0825 228 GC----ASIL---WK---------------DASKAK-EAAEAMK----ITAHDLKELGIIDGIIPEP 267 (317)
T ss_pred hh----hhhh---hc---------------ChhhhH-HHHHHcC----CCHHHHHhCCCcceeccCC
Confidence 32 1100 00 011111 1222232 7899999999999999864
No 135
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.27 E-value=0.043 Score=57.75 Aligned_cols=92 Identities=17% Similarity=0.096 Sum_probs=65.8
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCch----------hHHHHHHHHHHhcCCCeEEEEccccchHHHH
Q 020205 101 GSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSV----------TAGMGIYDAMKLCKADVSTICLGLAASMGAF 170 (329)
Q Consensus 101 ~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV----------~ag~aIyd~Ir~~~~pV~t~v~G~AASaas~ 170 (329)
+|.++...++...+-+...+. -.-+|+..+|+||-.+ ..+..+..++.....|+++++.|.|+++|++
T Consensus 379 ~g~l~~~~a~Kaarfi~lc~~--~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~ 456 (569)
T PLN02820 379 NGILFTESALKGAHFIELCAQ--RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNY 456 (569)
T ss_pred CCccCHHHHHHHHHHHHHHHh--cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHH
Confidence 366888888877666665443 2468999999999654 4555666666677899999999999999888
Q ss_pred HHhcCC--CCcEEEecCceEEEeccC
Q 020205 171 LLAAGS--KGKRYCMPNARVMIHQPL 194 (329)
Q Consensus 171 Ia~AGd--kg~R~a~PnS~imIHqp~ 194 (329)
.+++.. ....++.|++.+.+-.|.
T Consensus 457 aM~g~~~~~d~~~awp~A~i~vmg~e 482 (569)
T PLN02820 457 GMCGRAYSPNFLFMWPNARIGVMGGA 482 (569)
T ss_pred HhcCcCCCCCEEEECCCCeEEecCHH
Confidence 776321 124567788887765543
No 136
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=96.19 E-value=0.0085 Score=56.31 Aligned_cols=104 Identities=23% Similarity=0.253 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHH
Q 020205 140 TAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLN 219 (329)
Q Consensus 140 ~ag~aIyd~Ir~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~ 219 (329)
.....-|..|.++++||++-+.|.|-.+|.=|..||| -||+...+.|-+...-.+ -+.|+.. +.+ +-
T Consensus 113 k~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcD--IRycsqDAffsvkEVDvg---laADvGT----L~R----lp 179 (292)
T KOG1681|consen 113 KRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACD--IRYCSQDAFFSVKEVDVG---LAADVGT----LNR----LP 179 (292)
T ss_pred HHHHHHHHHHHhCChhHHHHHHhhhccccccceeecc--eeeecccceeeeeeeeee---hhhchhh----Hhh----hh
Confidence 3445556778899999999999999999999999999 599999999988876433 3334331 111 11
Q ss_pred HHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCCC
Q 020205 220 KILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 220 ~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~~ 261 (329)
+++ |- ...+.++.-..+-|++.||++.||+-+|.++.
T Consensus 180 kvV----Gn-~s~~~elafTar~f~a~EAl~~GLvSrvf~dk 216 (292)
T KOG1681|consen 180 KVV----GN-QSLARELAFTARKFSADEALDSGLVSRVFPDK 216 (292)
T ss_pred HHh----cc-hHHHHHHHhhhhhcchhhhhhcCcchhhcCCH
Confidence 111 10 11122222223568999999999999998864
No 137
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=96.12 E-value=0.08 Score=51.48 Aligned_cols=124 Identities=16% Similarity=0.160 Sum_probs=86.2
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHH-------HH----HHHHHhcCCCeEEEEccccchH
Q 020205 99 FLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGM-------GI----YDAMKLCKADVSTICLGLAASM 167 (329)
Q Consensus 99 ~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~-------aI----yd~Ir~~~~pV~t~v~G~AASa 167 (329)
|++|.+...+.+.+.+.+..+.. ..-++++...|.|+.+.++. .+ +...+.-..|.++++.|-++.+
T Consensus 144 f~gGSmG~v~geKi~ra~e~A~~--~rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG 221 (296)
T CHL00174 144 FMGGSMGSVVGEKITRLIEYATN--ESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGG 221 (296)
T ss_pred ccccCcCHHHHHHHHHHHHHHHH--cCCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchH
Confidence 56888888889999888876543 24689999999998876554 12 2112234579999999998888
Q ss_pred HHHHHh-cCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCceecHH
Q 020205 168 GAFLLA-AGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFMDAW 246 (329)
Q Consensus 168 as~Ia~-AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~lta~ 246 (329)
+++.+. .|| -+++.|++.+++..|.. +.+.+|.. +. +-|=+++
T Consensus 222 ~aas~a~l~D--iiiae~~A~IgfAGPrV--------------------------Ie~t~ge~-------lp-e~fq~ae 265 (296)
T CHL00174 222 VTASFGMLGD--IIIAEPNAYIAFAGKRV--------------------------IEQTLNKT-------VP-EGSQAAE 265 (296)
T ss_pred HHHHHHHccc--EEEEeCCeEEEeeCHHH--------------------------HHHhcCCc-------CC-cccccHH
Confidence 888755 588 46777899988776631 22222311 11 2255788
Q ss_pred HHHHcCCceeecCC
Q 020205 247 EAKEYGLVDAVIDD 260 (329)
Q Consensus 247 EAve~GLID~I~~~ 260 (329)
-.++.|+||.|++.
T Consensus 266 ~l~~~G~vD~iV~r 279 (296)
T CHL00174 266 YLFDKGLFDLIVPR 279 (296)
T ss_pred HHHhCcCceEEEcH
Confidence 88999999999874
No 138
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=96.03 E-value=0.018 Score=53.77 Aligned_cols=132 Identities=20% Similarity=0.194 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC-----c---------------hhHHHHHHHHHHhcCCCeEEEEccccch
Q 020205 107 LTADFIISQLLFLDAEDSKKDIRLFINSPGG-----S---------------VTAGMGIYDAMKLCKADVSTICLGLAAS 166 (329)
Q Consensus 107 ~~a~~ii~~L~~l~~~~~~k~I~L~INSPGG-----s---------------V~ag~aIyd~Ir~~~~pV~t~v~G~AAS 166 (329)
...+.+.+.|..+..+++...|.|+=-+||= + |..-..+++.|.+++.||++-++|.|..
T Consensus 58 ~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALG 137 (291)
T KOG1679|consen 58 VFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALG 137 (291)
T ss_pred HHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcc
Confidence 3445555666667766666666655555662 2 3445567788889999999999999999
Q ss_pred HHHHHHhcCCCCcEEEecCceEEEeccC----CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCce
Q 020205 167 MGAFLLAAGSKGKRYCMPNARVMIHQPL----GTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNF 242 (329)
Q Consensus 167 aas~Ia~AGdkg~R~a~PnS~imIHqp~----~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~ 242 (329)
+|-=+++||| -|++..++.+++-... .|..|.-- +-+..|.. ..++++-..+.
T Consensus 138 GGLElALACD--iRva~s~akmGLvET~laiiPGaGGtQR-------------------LpR~vg~a--laKELIftarv 194 (291)
T KOG1679|consen 138 GGLELALACD--IRVAASSAKMGLVETKLAIIPGAGGTQR-------------------LPRIVGVA--LAKELIFTARV 194 (291)
T ss_pred cchhhhhhcc--ceehhhhccccccccceeeecCCCccch-------------------hHHHHhHH--HHHhHhhhhee
Confidence 9999999999 4888888888765432 23444210 11112222 22344445678
Q ss_pred ecHHHHHHcCCceeecCCC
Q 020205 243 MDAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 243 lta~EAve~GLID~I~~~~ 261 (329)
|++.||...|||..+++..
T Consensus 195 l~g~eA~~lGlVnhvv~qn 213 (291)
T KOG1679|consen 195 LNGAEAAKLGLVNHVVEQN 213 (291)
T ss_pred ccchhHHhcchHHHHHhcC
Confidence 9999999999999998754
No 139
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=95.17 E-value=0.054 Score=50.74 Aligned_cols=136 Identities=22% Similarity=0.169 Sum_probs=89.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC-------CCCc----------h-------hHHHHHHHHHHhcCCCeEEE
Q 020205 104 VDDLTADFIISQLLFLDAEDSKKDIRLFINS-------PGGS----------V-------TAGMGIYDAMKLCKADVSTI 159 (329)
Q Consensus 104 Id~~~a~~ii~~L~~l~~~~~~k~I~L~INS-------PGGs----------V-------~ag~aIyd~Ir~~~~pV~t~ 159 (329)
..+.+...++.++..+..+.....|+|-=|+ -||+ + -..+.+-..||.+++||++.
T Consensus 43 frP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpViA~ 122 (282)
T COG0447 43 FRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAM 122 (282)
T ss_pred CCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceEEE
Confidence 3556777888888877665555555554342 2232 2 23456677899999999999
Q ss_pred EccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCC-CChhhHHHHHHHHHHHHHHHHHHHHHHcCCC-HHHHHhhh
Q 020205 160 CLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAG-GKATDMSIRIREMSYHKVKLNKILSRATGKP-VQQIELDT 237 (329)
Q Consensus 160 v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~-G~~~dl~~~a~el~~~~~~i~~iya~~tG~s-~e~I~~l~ 237 (329)
|.|.|..+|-++-+-||- -++..|++|+=..|..+.. |-.- + .++++.-|.. ..+|.-+
T Consensus 123 V~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~G-----s-----------~ylar~VGqKkArEIwfL- 183 (282)
T COG0447 123 VAGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYG-----S-----------SYLARIVGQKKAREIWFL- 183 (282)
T ss_pred EeeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCccc-----H-----------HHHHHHhhhhhhHHhhhh-
Confidence 999999999999998984 5778899998777764421 1110 0 1122223322 2233322
Q ss_pred cCCceecHHHHHHcCCceeecCC
Q 020205 238 DRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 238 d~d~~lta~EAve~GLID~I~~~ 260 (329)
-+-++++||++.|+|..|+.-
T Consensus 184 --cR~Y~A~eal~MGlVN~Vvp~ 204 (282)
T COG0447 184 --CRQYDAEEALDMGLVNTVVPH 204 (282)
T ss_pred --hhhccHHHHHhcCceeeeccH
Confidence 245799999999999999864
No 140
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.11 E-value=0.16 Score=53.62 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=67.1
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchh---H-------HHHHHHH-HHhc--CCCeEEEEccccc
Q 020205 99 FLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVT---A-------GMGIYDA-MKLC--KADVSTICLGLAA 165 (329)
Q Consensus 99 ~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~---a-------g~aIyd~-Ir~~--~~pV~t~v~G~AA 165 (329)
+++|.+.....+.+.+.+..... ..-+|+..++|+|+.+. + .-.|+.. .+.+ ..|.++++.|-|+
T Consensus 140 v~GGs~g~~~~~Ki~r~~elA~~--~~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~ 217 (569)
T PLN02820 140 VKGGTYYPITVKKHLRAQEIAAQ--CRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCT 217 (569)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 45788999999999887775443 24699999999998872 1 1134443 3323 4799999999999
Q ss_pred hHHHHHHhcCCCCcEEEe-cCceEEEecc
Q 020205 166 SMGAFLLAAGSKGKRYCM-PNARVMIHQP 193 (329)
Q Consensus 166 Saas~Ia~AGdkg~R~a~-PnS~imIHqp 193 (329)
++|+|+...+| ..++. +++.+.+..|
T Consensus 218 gGgAy~~a~~D--~vim~~~~a~i~~aGP 244 (569)
T PLN02820 218 AGGAYVPAMAD--ESVIVKGNGTIFLAGP 244 (569)
T ss_pred hHHHHHHHhCC--ceEEecCCcEEEecCH
Confidence 99999988787 45665 5788888766
No 141
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=94.05 E-value=0.76 Score=43.35 Aligned_cols=133 Identities=20% Similarity=0.190 Sum_probs=86.4
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCc---hhHHHHH----------HHHHHhcCCCeEEEEccccchH
Q 020205 101 GSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGS---VTAGMGI----------YDAMKLCKADVSTICLGLAASM 167 (329)
Q Consensus 101 ~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGs---V~ag~aI----------yd~Ir~~~~pV~t~v~G~AASa 167 (329)
+++|.-.-+-.+.+.++..=.+.+..+|++.|++||=. -++.+.| |..-|....||+..+.|.|.|+
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SG 119 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSG 119 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccH
Confidence 34444333333333333222445678999999999944 3444444 4445566789999999999999
Q ss_pred HHHH-HhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCce--ec
Q 020205 168 GAFL-LAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNF--MD 244 (329)
Q Consensus 168 as~I-a~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~--lt 244 (329)
|.+- .+.++ ..++.|. .|+|-.. ....++.|.++.|+++++...--. +.
T Consensus 120 aFLA~GlqA~--rl~AL~g--a~i~vM~------------------------~~s~ARVTk~~ve~Le~la~s~PvfA~g 171 (234)
T PF06833_consen 120 AFLAHGLQAN--RLIALPG--AMIHVMG------------------------KPSAARVTKRPVEELEELAKSVPVFAPG 171 (234)
T ss_pred HHHHHHHHhc--chhcCCC--CeeecCC------------------------hHHhHHHhhcCHHHHHHHhhcCCCcCCC
Confidence 8764 23445 4678783 3444221 023577788999999998754333 45
Q ss_pred HHHHHHcCCceeecCCC
Q 020205 245 AWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 245 a~EAve~GLID~I~~~~ 261 (329)
.+-=..+|.++++.+..
T Consensus 172 i~ny~~lG~l~~l~~~~ 188 (234)
T PF06833_consen 172 IENYAKLGALDELWDGD 188 (234)
T ss_pred HHHHHHhccHHHHhccc
Confidence 66678889999999854
No 142
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=93.66 E-value=0.23 Score=51.80 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=64.0
Q ss_pred EccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CchhHHHHHHHHHHhcCCCeEEEEccccchHHH
Q 020205 100 LGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPG----------GSVTAGMGIYDAMKLCKADVSTICLGLAASMGA 169 (329)
Q Consensus 100 l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPG----------GsV~ag~aIyd~Ir~~~~pV~t~v~G~AASaas 169 (329)
++|.|+.+.+..-.+-+..-+. -.=+|+...|.|| |-+.-|-.|..++-.+..|.+|++.+.+..+|+
T Consensus 336 ~~G~l~~~sa~KaArFI~~cd~--~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~ 413 (526)
T COG4799 336 LGGVLDIDSADKAARFIRLCDA--FNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAY 413 (526)
T ss_pred cccccchHHHHHHHHHHHhhhc--cCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEeccccccee
Confidence 3678888887766555543222 2458999999998 446788889999999999999999999999888
Q ss_pred HHHhcCCCCc--EEEecCceEEEec
Q 020205 170 FLLAAGSKGK--RYCMPNARVMIHQ 192 (329)
Q Consensus 170 ~Ia~AGdkg~--R~a~PnS~imIHq 192 (329)
+..++..-+- .|+-|++.+.+-.
T Consensus 414 ~~M~~~~~~~~~~~AwP~a~iaVMG 438 (526)
T COG4799 414 YVMGGKALGPDFNYAWPTAEIAVMG 438 (526)
T ss_pred eeecCccCCCceeEecCcceeeecC
Confidence 7665533221 2333555555443
No 143
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=92.94 E-value=0.72 Score=48.10 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=69.1
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHH-------HHH-HHHHh-cCCCeEEEEccccchHHH
Q 020205 99 FLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGM-------GIY-DAMKL-CKADVSTICLGLAASMGA 169 (329)
Q Consensus 99 ~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~-------aIy-d~Ir~-~~~pV~t~v~G~AASaas 169 (329)
|++|.+.....+.+.+.+..+.. ..-+++..++|.|+.+.++. .++ ...+. -..|+++++.|-|+.+++
T Consensus 93 ~~gGS~g~~~~~K~~r~~e~A~~--~~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a 170 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVKIMDLAMK--MGAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAV 170 (512)
T ss_pred ccccCCCHHHHHHHHHHHHHHHH--cCCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHH
Confidence 56888999999999887775543 24689999999999975543 233 22222 247999999999999999
Q ss_pred HHHhcCCCCcEEEecC-ceEEEeccC
Q 020205 170 FLLAAGSKGKRYCMPN-ARVMIHQPL 194 (329)
Q Consensus 170 ~Ia~AGdkg~R~a~Pn-S~imIHqp~ 194 (329)
+.++.|| .++|.++ +.+++..|.
T Consensus 171 ~~~al~D--~vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 171 YSPALTD--FIYMVDNTSQMFITGPQ 194 (512)
T ss_pred HHHHhcC--ceEEeccceEEEecChH
Confidence 9999999 5788886 567776653
No 144
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=92.04 E-value=0.33 Score=50.25 Aligned_cols=92 Identities=18% Similarity=0.295 Sum_probs=66.5
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC--chhHHH-------HHHHHHHhc--CCCeEEEEccccchH
Q 020205 99 FLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGG--SVTAGM-------GIYDAMKLC--KADVSTICLGLAASM 167 (329)
Q Consensus 99 ~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGG--sV~ag~-------aIyd~Ir~~--~~pV~t~v~G~AASa 167 (329)
+++|.+.....+.+.+.+..+... .-+++..++|.|+ .+.+++ .|+..+..+ ..|+++++.|.|..+
T Consensus 68 ~~gGs~g~~~~~Ki~ra~~~A~~~--~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg 145 (493)
T PF01039_consen 68 VLGGSVGEVHGEKIARAIELALEN--GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGG 145 (493)
T ss_dssp SGGGTBSHHHHHHHHHHHHHHHHH--TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGG
T ss_pred eecCCCCcccceeeehHHHHHHHc--CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccc
Confidence 357888899999988887755443 4688889999999 443332 233222222 589999999999999
Q ss_pred HHHHHhcCCCCcEEEecC-ceEEEeccC
Q 020205 168 GAFLLAAGSKGKRYCMPN-ARVMIHQPL 194 (329)
Q Consensus 168 as~Ia~AGdkg~R~a~Pn-S~imIHqp~ 194 (329)
++|++..+| ..++.+. +.+++..|.
T Consensus 146 ~A~~~~~~d--~~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 146 GAYLAALSD--FVIMVKGTARIFLAGPR 171 (493)
T ss_dssp GGHHHHHSS--EEEEETTTCEEESSTHH
T ss_pred hhhcccccC--ccccCccceEEEecccc
Confidence 999988888 4677776 888877663
No 145
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=91.88 E-value=0.88 Score=42.45 Aligned_cols=95 Identities=19% Similarity=0.135 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCC----CCCChhhHHHHHHHHHHHHHHHH
Q 020205 144 GIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGT----AGGKATDMSIRIREMSYHKVKLN 219 (329)
Q Consensus 144 aIyd~Ir~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~----~~G~~~dl~~~a~el~~~~~~i~ 219 (329)
.+.+.||.++.||++.|.|.|+-+|.-+..+||. .++..++.|..-..-.| .-|-+ +.
T Consensus 116 dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tPG~~vGlFCSTPGvA----------------la 177 (287)
T KOG1682|consen 116 DVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTPGAGVGLFCSTPGVA----------------LA 177 (287)
T ss_pred HHHHHHhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCCCCceeeEecCcchh----------------Hh
Confidence 4567789999999999999999999999888883 46667777643222111 12211 00
Q ss_pred HHHHHHcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCCCC
Q 020205 220 KILSRATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDDGK 262 (329)
Q Consensus 220 ~iya~~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~~~ 262 (329)
+++ +......|+-.+.-++++||+-.||+.+++.+++
T Consensus 178 Rav------pRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~e 214 (287)
T KOG1682|consen 178 RAV------PRKVAAYMLMTGLPITGEEALISGLVSKVVPAEE 214 (287)
T ss_pred hhc------chhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHH
Confidence 111 1111112222234578999999999999988654
No 146
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=91.41 E-value=1.9 Score=41.33 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=59.5
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 020205 145 IYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSR 224 (329)
Q Consensus 145 Iyd~Ir~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~ 224 (329)
..+.+-.+++|+++.+.|-|-..|..|+--+| -.++. -..-+|.|+.. .|...|--. .+. +-+
T Consensus 99 ~v~~fi~f~Kplia~vNGPAIGlgasil~lcD--~V~A~--Dka~F~TPfa~-lGq~PEG~S---s~t---------~p~ 161 (266)
T KOG0016|consen 99 FVNTFINFPKPLVALVNGPAIGLGASILPLCD--YVWAS--DKAWFQTPFAK-LGQSPEGCS---SVT---------LPK 161 (266)
T ss_pred HHHHHhcCCCCEEEEecCCccchhhHHhhhhh--eEEec--cceEEeccchh-cCCCCCcce---eee---------ehH
Confidence 45677788999999999999999999998888 23444 44556777642 222211000 000 011
Q ss_pred HcCCCHHHHHhhhcCCceecHHHHHHcCCceeecCC
Q 020205 225 ATGKPVQQIELDTDRDNFMDAWEAKEYGLVDAVIDD 260 (329)
Q Consensus 225 ~tG~s~e~I~~l~d~d~~lta~EAve~GLID~I~~~ 260 (329)
..|.. ...+++=-..-|+++||.++|||++|...
T Consensus 162 imG~~--~A~E~ll~~~kltA~Ea~~~glVskif~~ 195 (266)
T KOG0016|consen 162 IMGSA--SANEMLLFGEKLTAQEACEKGLVSKIFPA 195 (266)
T ss_pred hhchh--hHHHHHHhCCcccHHHHHhcCchhhhcCh
Confidence 11211 11222212356899999999999999875
No 147
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=89.51 E-value=2.2 Score=38.73 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCchhHHHHHHHHHHh--------------------------cCCCeE
Q 020205 105 DDLTADFIISQLLFLDAEDSKKDIRLFI-NSPGGSVTAGMGIYDAMKL--------------------------CKADVS 157 (329)
Q Consensus 105 d~~~a~~ii~~L~~l~~~~~~k~I~L~I-NSPGGsV~ag~aIyd~Ir~--------------------------~~~pV~ 157 (329)
.+...+.+.+.+..+.. +.+.++|.+ +-+||++..+..|...+-. ...||+
T Consensus 71 ~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 148 (224)
T cd06567 71 AESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGSLYDGPLV 148 (224)
T ss_pred CcchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCcccCCCEE
Confidence 35566666666666654 578888888 7799999999999988763 236899
Q ss_pred EEEccccchHHHHHHhcCC
Q 020205 158 TICLGLAASMGAFLLAAGS 176 (329)
Q Consensus 158 t~v~G~AASaas~Ia~AGd 176 (329)
+.+.+..+|+|-+++.+-.
T Consensus 149 vL~~~~taSaaE~~a~~lk 167 (224)
T cd06567 149 VLVNEGSASASEIFAGALQ 167 (224)
T ss_pred EEECCCCccHHHHHHHHHH
Confidence 9999999999999887644
No 148
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=86.09 E-value=6.7 Score=38.03 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=80.4
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHH-------HH---HHHHHhcCCCeEEEEc-----cc
Q 020205 99 FLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGM-------GI---YDAMKLCKADVSTICL-----GL 163 (329)
Q Consensus 99 ~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~-------aI---yd~Ir~~~~pV~t~v~-----G~ 163 (329)
|++|-+...+.+.|++.+.++-.+ .-+++++--|.|-.+-+|. .+ .+.+++.+.|++++.. |+
T Consensus 133 FmgGSmGsVvGeki~ra~E~A~e~--k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGV 210 (294)
T COG0777 133 FMGGSMGSVVGEKITRAIERAIED--KLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 210 (294)
T ss_pred ccccchhHHHHHHHHHHHHHHHHh--CCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 678888888889999999876543 4688888888887765543 12 2334445678888776 45
Q ss_pred cchHHHHHHhcCCCCcEEEecCceEEEeccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhhcCCcee
Q 020205 164 AASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYHKVKLNKILSRATGKPVQQIELDTDRDNFM 243 (329)
Q Consensus 164 AASaas~Ia~AGdkg~R~a~PnS~imIHqp~~~~~G~~~dl~~~a~el~~~~~~i~~iya~~tG~s~e~I~~l~d~d~~l 243 (329)
-||- ++.|| -.++-|.+.|++..|... .+. |.+..- +-+=
T Consensus 211 sASf----A~lGD--i~iAEP~AlIGFAGpRVI----------------------EQT-----------ire~LP-egfQ 250 (294)
T COG0777 211 SASF----AMLGD--IIIAEPGALIGFAGPRVI----------------------EQT-----------IREKLP-EGFQ 250 (294)
T ss_pred hHhH----HhccC--eeecCcccccccCcchhh----------------------hhh-----------hcccCC-cchh
Confidence 5554 35588 367789999998877521 011 111111 1245
Q ss_pred cHHHHHHcCCceeecCCC
Q 020205 244 DAWEAKEYGLVDAVIDDG 261 (329)
Q Consensus 244 ta~EAve~GLID~I~~~~ 261 (329)
+++--++.|+||.|+...
T Consensus 251 ~aEfLlehG~iD~iv~R~ 268 (294)
T COG0777 251 TAEFLLEHGMIDMIVHRD 268 (294)
T ss_pred hHHHHHHcCCceeeecHH
Confidence 688889999999998753
No 149
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=85.86 E-value=4.8 Score=36.91 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=52.6
Q ss_pred ChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCchhHHHHHHHHHHh------------------------cCCCeEEE
Q 020205 105 DDLTADFIISQLLFLDAEDSKKDIRLFI-NSPGGSVTAGMGIYDAMKL------------------------CKADVSTI 159 (329)
Q Consensus 105 d~~~a~~ii~~L~~l~~~~~~k~I~L~I-NSPGGsV~ag~aIyd~Ir~------------------------~~~pV~t~ 159 (329)
+....+.+.+.|..+... ..+.++|.+ +.+||++..+..|...+-. ...||++.
T Consensus 59 ~~~~~~~~~~~l~~~~~~-~~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pvvVL 137 (211)
T cd07560 59 SENTAEELKKALKELKKQ-GMKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNGKREAYASDDGGLYDGPLVVL 137 (211)
T ss_pred CchhHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCCceEEEecCCCccCCCCEEEE
Confidence 345566777777766643 367888888 7789999999888875542 34688888
Q ss_pred EccccchHHHHHHhcCC
Q 020205 160 CLGLAASMGAFLLAAGS 176 (329)
Q Consensus 160 v~G~AASaas~Ia~AGd 176 (329)
+.+..+|+|-+++++-.
T Consensus 138 vn~~TaSaaE~~a~~lk 154 (211)
T cd07560 138 VNGGSASASEIVAGALQ 154 (211)
T ss_pred eCCCcccHHHHHHHHHh
Confidence 99999999988877654
No 150
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=82.12 E-value=6 Score=40.12 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=60.9
Q ss_pred cEEEEcc-ccChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCchhHHHHHHHHHHh----------------------
Q 020205 96 RIIFLGS-QVDDLTADFIISQLLFLDAEDSKKDIRLFI-NSPGGSVTAGMGIYDAMKL---------------------- 151 (329)
Q Consensus 96 rII~l~g-~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-NSPGGsV~ag~aIyd~Ir~---------------------- 151 (329)
||-||.- .....+.+.+..+|..|+.+. .+.++|.+ |-|||.+.++..|.++...
T Consensus 204 ~IGyI~I~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~ 282 (406)
T COG0793 204 RIGYIRIPSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASG 282 (406)
T ss_pred eEEEEEecccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeecccccc
Confidence 3666531 124456666778887887654 89999999 8899999999999988762
Q ss_pred ---cCCCeEEEEccccchHHHHHHhcCC
Q 020205 152 ---CKADVSTICLGLAASMGAFLLAAGS 176 (329)
Q Consensus 152 ---~~~pV~t~v~G~AASaas~Ia~AGd 176 (329)
...|+++.+.+..||++=+++-|-.
T Consensus 283 ~~~~~~PlvvLvn~~SASAsEI~agalq 310 (406)
T COG0793 283 EALYDGPLVVLVNEGSASASEIFAGALQ 310 (406)
T ss_pred ccCCCCCEEEEECCCCccHHHHHHHHHH
Confidence 1368999999999999998876644
No 151
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=80.92 E-value=3 Score=36.94 Aligned_cols=44 Identities=14% Similarity=0.325 Sum_probs=30.8
Q ss_pred EEEEccccChhHHHHHHHHHHh-hhhcCCCCCeEEEEeCCCCchh
Q 020205 97 IIFLGSQVDDLTADFIISQLLF-LDAEDSKKDIRLFINSPGGSVT 140 (329)
Q Consensus 97 II~l~g~Id~~~a~~ii~~L~~-l~~~~~~k~I~L~INSPGGsV~ 140 (329)
|+-+.|.|...-++.+.+.+.. +.-..+.+.|.|++-||||-|.
T Consensus 102 VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rLES~GG~Vh 146 (155)
T PF08496_consen 102 VLDFKGDIKASEVESLREEISAILSVATPEDEVLVRLESPGGMVH 146 (155)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCceee
Confidence 3446899988777766554442 2223456899999999999774
No 152
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=80.71 E-value=4.8 Score=40.43 Aligned_cols=100 Identities=18% Similarity=0.170 Sum_probs=67.9
Q ss_pred cCcEEEEccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCchhHHH-------------------H
Q 020205 94 RQRIIFLGSQ-----VDDLTADFIISQLLFLDAEDSKKDIRLFIN-----SPGGSVTAGM-------------------G 144 (329)
Q Consensus 94 ~~rII~l~g~-----Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN-----SPGGsV~ag~-------------------a 144 (329)
..|+|.|+-| ++-++...+...|..++.++..+-|+|.=+ |-||||.+.. .
T Consensus 47 ~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYs 126 (401)
T KOG1684|consen 47 CARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYS 126 (401)
T ss_pred ceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 3477777644 677788888888888876555554444434 4578853221 2
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHhcCCCCcEE-------EecCceEEEeccCC
Q 020205 145 IYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRY-------CMPNARVMIHQPLG 195 (329)
Q Consensus 145 Iyd~Ir~~~~pV~t~v~G~AASaas~Ia~AGdkg~R~-------a~PnS~imIHqp~~ 195 (329)
+...|-.+.+|+++.++|+-+.+|.=+...|. .|+ |||..-|++|.-.+
T Consensus 127 l~~~igtY~KP~ValmdGITMGgG~GLS~hg~--fRVATerT~~AmPEt~IGlfPDVG 182 (401)
T KOG1684|consen 127 LNHLIGTYLKPYVALMDGITMGGGVGLSVHGR--FRVATERTVFAMPETGIGLFPDVG 182 (401)
T ss_pred HHHHHHHhcCceEEEeeceeecCCcceeecce--eEEeeccceecccccccccccCcc
Confidence 23345567799999999999999998888776 455 56666677775443
No 153
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=79.40 E-value=11 Score=32.12 Aligned_cols=69 Identities=13% Similarity=0.049 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCchhHHHHHHHHHHh-----------------------------cCCCe
Q 020205 107 LTADFIISQLLFLDAEDSKKDIRLFI-NSPGGSVTAGMGIYDAMKL-----------------------------CKADV 156 (329)
Q Consensus 107 ~~a~~ii~~L~~l~~~~~~k~I~L~I-NSPGGsV~ag~aIyd~Ir~-----------------------------~~~pV 156 (329)
...+.+.+.+..+.. ...+.++|.+ +.+||+...+..+...+.. ...||
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (169)
T PF03572_consen 15 SFDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPV 93 (169)
T ss_dssp HHHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEE
T ss_pred ccHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCE
Confidence 445556666666553 4578999999 8889999999988877652 34679
Q ss_pred EEEEccccchHHHHHHhcCC
Q 020205 157 STICLGLAASMGAFLLAAGS 176 (329)
Q Consensus 157 ~t~v~G~AASaas~Ia~AGd 176 (329)
++.+.+.++|+|-+++.+..
T Consensus 94 ~vL~~~~t~Saae~fa~~lk 113 (169)
T PF03572_consen 94 YVLTDENTASAAEIFASALK 113 (169)
T ss_dssp EEEE-TTBBTHHHHHHHHHH
T ss_pred EEEeCCCCCChhHHHHHHHH
Confidence 99999999999999887643
No 154
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=79.29 E-value=7.5 Score=37.91 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=58.1
Q ss_pred cEEEEcc-ccChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCchhHHHHHHHHHHh----------------------
Q 020205 96 RIIFLGS-QVDDLTADFIISQLLFLDAEDSKKDIRLFI-NSPGGSVTAGMGIYDAMKL---------------------- 151 (329)
Q Consensus 96 rII~l~g-~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-NSPGGsV~ag~aIyd~Ir~---------------------- 151 (329)
+|.||.- ..+....+.+.+.|..++.. +.+.++|.+ +-+||++..+..|...+-.
T Consensus 152 ~igYi~i~~f~~~~~~~~~~~l~~l~~~-~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~ 230 (334)
T TIGR00225 152 SVGYIRISSFSEHTTEDVKKALDKLEKK-NAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGR 230 (334)
T ss_pred EEEEEEEEecccchHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCC
Confidence 3555421 13445567777777776543 568888888 7899999999999887621
Q ss_pred --cCCCeEEEEccccchHHHHHHhcCC
Q 020205 152 --CKADVSTICLGLAASMGAFLLAAGS 176 (329)
Q Consensus 152 --~~~pV~t~v~G~AASaas~Ia~AGd 176 (329)
...||++.+.+..||+|-+++.+-.
T Consensus 231 ~~~~~pv~vLvn~~TaSaaE~~a~~l~ 257 (334)
T TIGR00225 231 QPYNLPLVVLVNRGSASASEIFAGALQ 257 (334)
T ss_pred ccCCCCEEEEECCCCCcHHHHHHHHHH
Confidence 2468889999999999998887654
No 155
>PRK11186 carboxy-terminal protease; Provisional
Probab=76.48 E-value=12 Score=40.62 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=58.4
Q ss_pred CcEEEEccc-cChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCchhHHHHHHHHHH----------------------
Q 020205 95 QRIIFLGSQ-VDDLTADFIISQLLFLDAEDSKKDIRLFI-NSPGGSVTAGMGIYDAMK---------------------- 150 (329)
Q Consensus 95 ~rII~l~g~-Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-NSPGGsV~ag~aIyd~Ir---------------------- 150 (329)
++|.||.-+ ....+.+.+.+.|..+.. .+.+.++|.+ |-|||.+.++..|...+-
T Consensus 353 ~kIGYI~I~sF~~~~~~d~~~~l~~l~~-~~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~ 431 (667)
T PRK11186 353 EKVGVLDIPGFYVGLTDDVKKQLQKLEK-QNVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTD 431 (667)
T ss_pred CcEEEEEecccccchHHHHHHHHHHHHH-CCCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCC
Confidence 456655211 123356677777777764 3578999998 889999999999988742
Q ss_pred ---hcCCCeEEEEccccchHHHHHHhcC
Q 020205 151 ---LCKADVSTICLGLAASMGAFLLAAG 175 (329)
Q Consensus 151 ---~~~~pV~t~v~G~AASaas~Ia~AG 175 (329)
....|+++.+.+..||++-+++.|=
T Consensus 432 ~~~~~~gPlvVLVN~~SASASEIfA~al 459 (667)
T PRK11186 432 GVVYYKGPLVVLVDRYSASASEIFAAAM 459 (667)
T ss_pred cccccCCCEEEEeCCCCccHHHHHHHHH
Confidence 1235899999999999999988664
No 156
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=76.37 E-value=14 Score=37.03 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=55.3
Q ss_pred CcEEEEc-cccChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCchhHHHHHHHHHHhc--------------------
Q 020205 95 QRIIFLG-SQVDDLTADFIISQLLFLDAEDSKKDIRLFI-NSPGGSVTAGMGIYDAMKLC-------------------- 152 (329)
Q Consensus 95 ~rII~l~-g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-NSPGGsV~ag~aIyd~Ir~~-------------------- 152 (329)
++|.||. ...+..+++.+.+.|..+... ..+.++|.+ +-|||.+..+..|.+.+-..
T Consensus 194 ~~IgYi~i~~F~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (389)
T PLN00049 194 PKIGYIKLTTFNQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADG 272 (389)
T ss_pred CCEEEEEeccccchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCC
Confidence 3666653 123445677788888777643 468888888 77899999999999887321
Q ss_pred ------CCCeEEEEccccchHHHHHHhcC
Q 020205 153 ------KADVSTICLGLAASMGAFLLAAG 175 (329)
Q Consensus 153 ------~~pV~t~v~G~AASaas~Ia~AG 175 (329)
..|+++.+.+..||++-+++.+=
T Consensus 273 ~~~~~~~~PvvVLvn~~TaSasEi~a~al 301 (389)
T PLN00049 273 SSAIATSEPLAVLVNKGTASASEILAGAL 301 (389)
T ss_pred CccccCCCCEEEEECCCCccHHHHHHHHH
Confidence 24677777777777777766553
No 157
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=74.51 E-value=18 Score=34.09 Aligned_cols=80 Identities=19% Similarity=0.124 Sum_probs=50.7
Q ss_pred hhcCcEEEEccc-cChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCchhHHHHHHHHHHh------------------
Q 020205 92 LLRQRIIFLGSQ-VDDLTADFIISQLLFLDAEDSKKDIRLFI-NSPGGSVTAGMGIYDAMKL------------------ 151 (329)
Q Consensus 92 ll~~rII~l~g~-Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-NSPGGsV~ag~aIyd~Ir~------------------ 151 (329)
+..++|.||.-+ ..+...+.+..+++. ....+.++|.+ +-+||++. ..|.+.+..
T Consensus 84 ~~~~~igYi~i~~~~~~~~~~~~~~~~~---~~~~~glIiDlR~N~GG~~~--~~l~~~~~~~~~~~~~~r~~~~~~~~p 158 (266)
T cd07562 84 LSDGRIGYVHIPDMGDDGFAEFLRDLLA---EVDKDGLIIDVRFNGGGNVA--DLLLDFLSRRRYGYDIPRGGGKPVTYP 158 (266)
T ss_pred hcCCcEEEEEeCCCChHHHHHHHHHHHh---cCCCceEEEEecCCCCCcHH--HHHHHHhCCCceEEEccCCCCCCCCCc
Confidence 445778776322 233444445555442 22268888888 56777743 344444421
Q ss_pred ---cCCCeEEEEccccchHHHHHHhcCC
Q 020205 152 ---CKADVSTICLGLAASMGAFLLAAGS 176 (329)
Q Consensus 152 ---~~~pV~t~v~G~AASaas~Ia~AGd 176 (329)
.+.||++.+.+.++|+|-+++.+-.
T Consensus 159 ~~~~~~pv~vL~~~~t~SaaE~~a~~lk 186 (266)
T cd07562 159 SGRWRGPVVVLVNEGSASDAEIFAYGFR 186 (266)
T ss_pred ccccCCCEEEEECCCCCchHHHHHHHHH
Confidence 3579999999999999999887654
No 158
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=73.45 E-value=23 Score=33.52 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=41.0
Q ss_pred cCcEEEE--ccccChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCchhHHHHHHHHHHh
Q 020205 94 RQRIIFL--GSQVDDLTADFIISQLLFLDAEDSKKDIRLFI-NSPGGSVTAGMGIYDAMKL 151 (329)
Q Consensus 94 ~~rII~l--~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-NSPGGsV~ag~aIyd~Ir~ 151 (329)
.++|.|| .. ....+.+.+.+.+..++.+ ..+.++|.+ +-+||.+..+..|...+-.
T Consensus 63 ~~~IGYi~i~~-F~~~~~~~l~~a~~~l~~~-~~~~LIlDLR~N~GG~~~~a~~las~f~~ 121 (256)
T cd07561 63 GKKVGYLVYNS-FTSGYDDELNQAFAEFKAQ-GVTELVLDLRYNGGGLVSSANLLASLLAP 121 (256)
T ss_pred CCcEEEEEECc-cccchHHHHHHHHHHHHHc-CCCeEEEEeCCCCCccHHHHHHHHHHhcC
Confidence 4556664 32 2334667788888877754 578888888 7799999999999988875
No 159
>smart00245 TSPc tail specific protease. tail specific protease
Probab=72.17 E-value=21 Score=31.90 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=55.1
Q ss_pred CcEEEEc-cccChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCchhHHHHHHHHHHhc--------------------
Q 020205 95 QRIIFLG-SQVDDLTADFIISQLLFLDAEDSKKDIRLFI-NSPGGSVTAGMGIYDAMKLC-------------------- 152 (329)
Q Consensus 95 ~rII~l~-g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-NSPGGsV~ag~aIyd~Ir~~-------------------- 152 (329)
++|-|+. ...+..+.+.+.+.+..+... +.+.++|.+ +.+||.+..+..|.+.+-..
T Consensus 28 ~~igYi~i~~f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 106 (192)
T smart00245 28 GNIGYIRIPEFSEHTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGELETYPAN 106 (192)
T ss_pred CcEEEEEEeEEChhhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCceEEEecC
Confidence 4555542 123444556777777777643 468888888 56999999999998877321
Q ss_pred -----CCCeEEEEccccchHHHHHHhcCC
Q 020205 153 -----KADVSTICLGLAASMGAFLLAAGS 176 (329)
Q Consensus 153 -----~~pV~t~v~G~AASaas~Ia~AGd 176 (329)
..||++.+.+..+|+|-+++.+-.
T Consensus 107 ~~~~~~~pv~vL~~~~TaSaaE~~a~~lk 135 (192)
T smart00245 107 LGRKYSKPLVVLVNEGTASASEIFAGALK 135 (192)
T ss_pred CCcccCCCEEEEECCCCeeHHHHHHHHHh
Confidence 146778888888888888776644
No 160
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=70.45 E-value=25 Score=32.55 Aligned_cols=65 Identities=12% Similarity=-0.021 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhhcCCCCCeEEEE-eCCCCchhHHHHHHHHHHh---------------------------------cCC
Q 020205 109 ADFIISQLLFLDAEDSKKDIRLFI-NSPGGSVTAGMGIYDAMKL---------------------------------CKA 154 (329)
Q Consensus 109 a~~ii~~L~~l~~~~~~k~I~L~I-NSPGGsV~ag~aIyd~Ir~---------------------------------~~~ 154 (329)
.+.+-+.+..+.. .+.++|.+ +.+||+...+..|...+-. .+.
T Consensus 82 ~~~~~~~~~~l~~---~~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (250)
T cd07563 82 EALLDEALDKLAD---TDALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTK 158 (250)
T ss_pred HHHHHHHHHHhcC---CCeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCC
Confidence 3444444444442 37888888 6689999888888887751 125
Q ss_pred CeEEEEccccchHHHHHHhcCC
Q 020205 155 DVSTICLGLAASMGAFLLAAGS 176 (329)
Q Consensus 155 pV~t~v~G~AASaas~Ia~AGd 176 (329)
||++.+.+.++|+|-+++.+-.
T Consensus 159 pv~vL~~~~T~SaaE~~a~~lk 180 (250)
T cd07563 159 PVYVLTSPVTFSAAEEFAYALK 180 (250)
T ss_pred CEEEEeCCCcCcHHHHHHHHHH
Confidence 7888888888888888777654
No 161
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=67.03 E-value=15 Score=38.74 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=64.8
Q ss_pred EccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhH--------HHHHHHHHHhcC-CCeEEEEccccchHHHH
Q 020205 100 LGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTA--------GMGIYDAMKLCK-ADVSTICLGLAASMGAF 170 (329)
Q Consensus 100 l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~a--------g~aIyd~Ir~~~-~pV~t~v~G~AASaas~ 170 (329)
++|..-+..++.+++....+.. ...+++...+|-|+.+.. |.-.|+..+.+. .|.++++.|-|+.+|+|
T Consensus 103 ~gGt~~~~~~~Ki~r~~~~A~~--~g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY 180 (526)
T COG4799 103 KGGTLGEMTAKKILRAQELAIE--NGLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAY 180 (526)
T ss_pred ecccccccccchHHHHHHHHHH--cCCCEEEEEcccccccccCccccccchHHHHHHHHhccCCCEEEEEEecCcccccc
Confidence 4667777777777766553332 246788888888877533 455566666665 79999999999999999
Q ss_pred HHhcCCCCcEEEecC-ceEEEecc
Q 020205 171 LLAAGSKGKRYCMPN-ARVMIHQP 193 (329)
Q Consensus 171 Ia~AGdkg~R~a~Pn-S~imIHqp 193 (329)
+-.-+| ..+|..+ +.+.+..|
T Consensus 181 ~pal~D--~~imv~~~~~mfltGP 202 (526)
T COG4799 181 SPALTD--FVIMVRDQSYMFLTGP 202 (526)
T ss_pred cccccc--eEEEEcCCccEEeeCH
Confidence 998898 4677776 66665554
No 162
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=47.30 E-value=50 Score=32.30 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=49.6
Q ss_pred EEEEccc--cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccc
Q 020205 97 IIFLGSQ--VDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAA 165 (329)
Q Consensus 97 II~l~g~--Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AA 165 (329)
+|-+|.. .|- .+.+-|.++..++..+.|.||+-+-|-.+..+..+.++.++ ++||+++..|..+
T Consensus 180 ~VS~Gn~~~adv----~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 180 CVGIGGDPFNGT----NFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEeCCCCCCCC----CHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 4556766 443 24455667777788999999999988888888888888664 7999999998875
No 163
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=40.68 E-value=63 Score=28.44 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=24.7
Q ss_pred EEEeCCCCchhHHHHHHHHHHhcCCCeEE
Q 020205 130 LFINSPGGSVTAGMGIYDAMKLCKADVST 158 (329)
Q Consensus 130 L~INSPGGsV~ag~aIyd~Ir~~~~pV~t 158 (329)
+.|| ||+.--.+.+|.|+|+....||+=
T Consensus 70 IvIN-pga~THTSvAlrDAi~av~iP~vE 97 (146)
T COG0757 70 IVIN-PGAYTHTSVALRDAIAAVSIPVVE 97 (146)
T ss_pred EEEc-CccchhhHHHHHHHHHhcCCCEEE
Confidence 5566 999999999999999999999763
No 164
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=40.20 E-value=1.7e+02 Score=25.77 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=52.9
Q ss_pred CCCccccCChhhhhh------cCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhc
Q 020205 79 YLPKFEELDTTNMLL------RQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLC 152 (329)
Q Consensus 79 ~~p~~~~~di~~~ll------~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~ 152 (329)
..+++.+.|++..++ ..+|.++|+. +++.+.+.+.|.. ..+.-.|.-+-+-|-+..... +|.+.|+.+
T Consensus 25 ~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~---~yp~l~i~g~~~g~~~~~~~~-~i~~~I~~~ 98 (171)
T cd06533 25 LPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRA---RYPGLKIVGYHHGYFGPEEEE-EIIERINAS 98 (171)
T ss_pred CCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHH---HCCCcEEEEecCCCCChhhHH-HHHHHHHHc
Confidence 445666777777776 2467777754 4555555555543 334444444456666654444 499999999
Q ss_pred CCCeEEEEccccchH
Q 020205 153 KADVSTICLGLAASM 167 (329)
Q Consensus 153 ~~pV~t~v~G~AASa 167 (329)
+.+++.+..|.=-.-
T Consensus 99 ~pdiv~vglG~PkQE 113 (171)
T cd06533 99 GADILFVGLGAPKQE 113 (171)
T ss_pred CCCEEEEECCCCHHH
Confidence 999999988854443
No 165
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=39.94 E-value=80 Score=31.18 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=44.7
Q ss_pred EEEEcccc-ChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccc
Q 020205 97 IIFLGSQV-DDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAA 165 (329)
Q Consensus 97 II~l~g~I-d~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AA 165 (329)
+|-+|+.- .+ -.+.+-|.++..++..+.|.|++-.-|-...++.+.... ...++||+++..|..+
T Consensus 199 ~VsiGnd~~~g---~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 199 CVGIGGDPFNG---TNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred EEEeCCCCCCC---CCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence 44566552 11 134556667777778899999999888776666665554 2346899999998776
No 166
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=39.34 E-value=75 Score=30.51 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=45.5
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEE
Q 020205 96 RIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTIC 160 (329)
Q Consensus 96 rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v 160 (329)
||+|+|..+-..-.+.+...|..+..+.+.+-++..-....|...-...+++.|+....+|.|..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~G 66 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITMG 66 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEcc
Confidence 68899877766556666666767776655554444444443334556899999999999999885
No 167
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=37.11 E-value=47 Score=25.01 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCC-CHHHHHhhhcCCceecHHHHHHc
Q 020205 217 KLNKILSRATGK-PVQQIELDTDRDNFMDAWEAKEY 251 (329)
Q Consensus 217 ~i~~iya~~tG~-s~e~I~~l~d~d~~lta~EAve~ 251 (329)
.+.+-+.+.+|. +.++|..++. +..|+|.||++.
T Consensus 7 k~VQ~iKEiv~~hse~eIya~L~-ecnMDpnea~qr 41 (60)
T PF06972_consen 7 KTVQSIKEIVGCHSEEEIYAMLK-ECNMDPNEAVQR 41 (60)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH-HhCCCHHHHHHH
Confidence 345566777777 8999988776 789999999875
No 168
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=36.88 E-value=2.2e+02 Score=22.83 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=28.9
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccc
Q 020205 125 KKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAA 165 (329)
Q Consensus 125 ~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AA 165 (329)
.+++.|.| |-.|.-.+..+.....++.+.+|++.......
T Consensus 47 ~~d~vi~i-S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 47 PGDVVIAI-SNSGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCCEEEEE-eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 45676666 77777777788888888888888877664433
No 169
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=36.24 E-value=81 Score=30.85 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=36.2
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEeCCCCchhHH-HHHHHHHHhcCCCeEEEEccccc
Q 020205 111 FIISQLLFLDAEDSKKDIRLFINSPGGSVTAG-MGIYDAMKLCKADVSTICLGLAA 165 (329)
Q Consensus 111 ~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag-~aIyd~Ir~~~~pV~t~v~G~AA 165 (329)
.++..|..+++ |+.....+.|-=.||...+- ...+.. +..++||++|+.|..|
T Consensus 187 ~fid~L~~fe~-Dp~T~~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 187 SFIDALEMFEA-DPETEAIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred cHHHHHHHHhc-CccccEEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEEeccCC
Confidence 44677776664 45566777899999986532 222222 4455999999999988
No 170
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=36.19 E-value=1.5e+02 Score=23.01 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=40.3
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCCeEE------EEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccchHHHH
Q 020205 97 IIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRL------FINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAF 170 (329)
Q Consensus 97 II~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L------~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AASaas~ 170 (329)
++.+.|.++-..+..+.+.|..+......+.|+| +|+|-|-.+. ..++..++..+ +..++.|.-....-+
T Consensus 15 vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssgl~~L--~~~~~~~~~~~--~~~~l~~~~~~~~~~ 90 (108)
T TIGR00377 15 IVRLSGELDAHTAPLLREKVTPAAERTGPRPIVLDLEDLEFMDSSGLGVL--LGRYKQVRRVG--GQLVLVSVSPRVARL 90 (108)
T ss_pred EEEEecccccccHHHHHHHHHHHHHhcCCCeEEEECCCCeEEccccHHHH--HHHHHHHHhcC--CEEEEEeCCHHHHHH
Confidence 4468899999989888888876554334455666 4455442222 23344444433 344444544444444
Q ss_pred HHh
Q 020205 171 LLA 173 (329)
Q Consensus 171 Ia~ 173 (329)
+-.
T Consensus 91 l~~ 93 (108)
T TIGR00377 91 LDI 93 (108)
T ss_pred HHH
Confidence 433
No 171
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.68 E-value=2e+02 Score=25.26 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=54.4
Q ss_pred CccccCChhhhhhc------CcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCchhHHHHHHHHHHhcC
Q 020205 81 PKFEELDTTNMLLR------QRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFI-NSPGGSVTAGMGIYDAMKLCK 153 (329)
Q Consensus 81 p~~~~~di~~~ll~------~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-NSPGGsV~ag~aIyd~Ir~~~ 153 (329)
.++.+.|+...++. .+|.++|+. +++.+.+.+.|.. ..+ .+.+.- .+|--+-.+..+|.+.|+.++
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~---~yP--~l~ivg~~~g~f~~~~~~~i~~~I~~~~ 101 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRR---RYP--GLRIVGYHHGYFDEEEEEAIINRINASG 101 (172)
T ss_pred cccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHH---HCC--CeEEEEecCCCCChhhHHHHHHHHHHcC
Confidence 66667788887774 477788865 5666666666653 223 344432 333237778899999999999
Q ss_pred CCeEEEEccccchH
Q 020205 154 ADVSTICLGLAASM 167 (329)
Q Consensus 154 ~pV~t~v~G~AASa 167 (329)
.+++.+..|.==.-
T Consensus 102 pdiv~vglG~PkQE 115 (172)
T PF03808_consen 102 PDIVFVGLGAPKQE 115 (172)
T ss_pred CCEEEEECCCCHHH
Confidence 99999888855443
No 172
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=34.34 E-value=1.2e+02 Score=31.67 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=56.0
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CchhHHHHHHHHHHhcCCCeEEEEccccchHHHH
Q 020205 101 GSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPG----------GSVTAGMGIYDAMKLCKADVSTICLGLAASMGAF 170 (329)
Q Consensus 101 ~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPG----------GsV~ag~aIyd~Ir~~~~pV~t~v~G~AASaas~ 170 (329)
+|.+..+++.....-+++-.+ ..=++++..|+|| |-...|-.+..+.-..+.|-+|++.|-+..+.|-
T Consensus 362 ~G~L~s~sa~KgarfIe~c~q--~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syGG~y~ 439 (536)
T KOG0540|consen 362 GGVLFSESAVKGARFIELCDQ--RNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYGGNYA 439 (536)
T ss_pred ccccchhhhhhhHHHHHHHHh--cCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccCCccc
Confidence 366777777766655554443 3468999999998 2234455556666667789999999988884443
Q ss_pred H---HhcCCCCcEEEecCceEEEe
Q 020205 171 L---LAAGSKGKRYCMPNARVMIH 191 (329)
Q Consensus 171 I---a~AGdkg~R~a~PnS~imIH 191 (329)
+ .+.|| -.|+-|+++|.+.
T Consensus 440 m~sr~~~gd--~~yawP~A~Iavm 461 (536)
T KOG0540|consen 440 MCSRGYSGD--INYAWPNARIAVM 461 (536)
T ss_pred ccccccCCc--eeEEcccceeeec
Confidence 1 22344 3466677777543
No 173
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=33.46 E-value=1.2e+02 Score=25.99 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=33.2
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcC--CCeEEEEccc
Q 020205 96 RIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCK--ADVSTICLGL 163 (329)
Q Consensus 96 rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~--~pV~t~v~G~ 163 (329)
.+|-+|...|-. +.+-|.++..++..+.|.+||.+-+- +....+++++.. +||+++-.|.
T Consensus 30 ~~vs~Gn~~dv~----~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 30 YVVSVGNEADVD----FADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp EEEE-TT-SSS-----HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE---
T ss_pred EEEEeCccccCC----HHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcCCCEEEEeCCC
Confidence 355667666543 33445566667778999999997543 577777777665 8999998887
No 174
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=33.15 E-value=93 Score=27.42 Aligned_cols=57 Identities=23% Similarity=0.138 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhhcCCCCCeEEEEeCC-CCchhHHHHHHHHHHhcC-----CCeEEEEccccch
Q 020205 110 DFIISQLLFLDAEDSKKDIRLFINSP-GGSVTAGMGIYDAMKLCK-----ADVSTICLGLAAS 166 (329)
Q Consensus 110 ~~ii~~L~~l~~~~~~k~I~L~INSP-GGsV~ag~aIyd~Ir~~~-----~pV~t~v~G~AAS 166 (329)
+.+.+.|..+..++..+.|.|.+=-. |..-+.+..+..+++..+ .||++++.|..+-
T Consensus 59 ~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 59 STRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp SHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCC
Confidence 34455566555555556555554444 334577888888888764 7899999987765
No 175
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=32.93 E-value=1.9e+02 Score=23.87 Aligned_cols=42 Identities=10% Similarity=0.038 Sum_probs=24.5
Q ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccch
Q 020205 125 KKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAAS 166 (329)
Q Consensus 125 ~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AAS 166 (329)
-.-++|=|.+.+=+.....++.++|...+.||.++|..-.=|
T Consensus 58 l~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra 99 (110)
T PF04273_consen 58 LQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSGTRA 99 (110)
T ss_dssp -EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCSHHH
T ss_pred CeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCChhH
Confidence 345555555544445667778888999999999999843333
No 176
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=32.21 E-value=2.1e+02 Score=22.29 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=43.5
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCCeEE------EEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccchHHHH
Q 020205 97 IIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRL------FINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAF 170 (329)
Q Consensus 97 II~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L------~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AASaas~ 170 (329)
++.+.|+++-..++.+.+++..+-...+.+.|.| +|+|.|=.+ -..++..++..+ +..+..|.....--+
T Consensus 11 vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgi~~--L~~~~~~~~~~g--~~l~l~~~~~~v~~~ 86 (106)
T TIGR02886 11 IVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGV--ILGRYKKIKNEG--GEVIVCNVSPAVKRL 86 (106)
T ss_pred EEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchHHHH--HHHHHHHHHHcC--CEEEEEeCCHHHHHH
Confidence 5578999999999999998876533233456666 344443211 122334444433 444455655555555
Q ss_pred HHhcCC
Q 020205 171 LLAAGS 176 (329)
Q Consensus 171 Ia~AGd 176 (329)
+-.+|-
T Consensus 87 l~~~gl 92 (106)
T TIGR02886 87 FELSGL 92 (106)
T ss_pred HHHhCC
Confidence 555553
No 177
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=31.85 E-value=2.5e+02 Score=21.99 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=45.6
Q ss_pred EEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEe-CCCCchhHHHHHHHHHHhcC-CCeEEEEccccchHHHHHHhc
Q 020205 97 IIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFIN-SPGGSVTAGMGIYDAMKLCK-ADVSTICLGLAASMGAFLLAA 174 (329)
Q Consensus 97 II~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~IN-SPGGsV~ag~aIyd~Ir~~~-~pV~t~v~G~AASaas~Ia~A 174 (329)
++.+.|+++...+..+.+.+...-.+...+.|+|.+. .+-=+.+....+.+..+.++ ..+..++.|.-....-++-.+
T Consensus 13 v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l~~~ 92 (109)
T cd07041 13 VLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTLVEL 92 (109)
T ss_pred EEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHh
Confidence 4568999999999999887754332234456666442 22222333344444444433 335555666666666666665
Q ss_pred CC
Q 020205 175 GS 176 (329)
Q Consensus 175 Gd 176 (329)
|-
T Consensus 93 gl 94 (109)
T cd07041 93 GI 94 (109)
T ss_pred CC
Confidence 53
No 178
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=31.39 E-value=1.1e+02 Score=29.65 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=46.9
Q ss_pred hcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHH--HHHHHH
Q 020205 93 LRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAG--MGIYDA 148 (329)
Q Consensus 93 l~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag--~aIyd~ 148 (329)
+.++|.-..+.++......+..+|..|+++...+-++|.|.|-||+-.+. ..+++.
T Consensus 32 ~~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~IE~ya~rlfd~ 89 (271)
T COG1512 32 LSQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGETIEQYATRLFDK 89 (271)
T ss_pred ccceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 36788888999999999999999999999888999999999999986544 444454
No 179
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=29.14 E-value=2.5e+02 Score=21.04 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=49.1
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeC-CCCchhHHHHHHHHHHhcC-CCeEEEEccccchHHHHHHh
Q 020205 96 RIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINS-PGGSVTAGMGIYDAMKLCK-ADVSTICLGLAASMGAFLLA 173 (329)
Q Consensus 96 rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INS-PGGsV~ag~aIyd~Ir~~~-~pV~t~v~G~AASaas~Ia~ 173 (329)
.++.+.|+++-..+..+.+++..+..+ ..+.|.|.+.. +.=+..+...|....+.+. ..+.+.+.|.-.....++-.
T Consensus 10 ~ii~l~G~l~~~~~~~~~~~~~~~~~~-~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~~~~~~~l~~ 88 (99)
T cd07043 10 LVVRLSGELDAATAPELREALEELLAE-GPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLEL 88 (99)
T ss_pred EEEEEeceecccchHHHHHHHHHHHHc-CCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 356788999998888888887755432 23566655432 2223455555666666654 35666666766666666666
Q ss_pred cC
Q 020205 174 AG 175 (329)
Q Consensus 174 AG 175 (329)
+|
T Consensus 89 ~g 90 (99)
T cd07043 89 TG 90 (99)
T ss_pred hC
Confidence 55
No 180
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=27.73 E-value=3.2e+02 Score=21.90 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=51.6
Q ss_pred hhhhhhcC---cEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC-CCchhHHHHHHHHHHhcCC-CeEEEEcc
Q 020205 88 TTNMLLRQ---RIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSP-GGSVTAGMGIYDAMKLCKA-DVSTICLG 162 (329)
Q Consensus 88 i~~~ll~~---rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSP-GGsV~ag~aIyd~Ir~~~~-pV~t~v~G 162 (329)
+...+++. ++++++..+.. +.+++.+... ++-.+-|.+. +........+.+.+++... .+..++.|
T Consensus 18 ~~~~~l~~~G~~V~~lg~~~~~---~~l~~~~~~~------~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 18 IVARALRDAGFEVIDLGVDVPP---EEIVEAAKEE------DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred HHHHHHHHCCCEEEECCCCCCH---HHHHHHHHHc------CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 34444533 57888866554 4555555432 2334445555 7778888999999999876 68889999
Q ss_pred ccchHH--HHHHhcCC
Q 020205 163 LAASMG--AFLLAAGS 176 (329)
Q Consensus 163 ~AASaa--s~Ia~AGd 176 (329)
.+.+.. .+...+.|
T Consensus 89 ~~~~~~~~~~~~~G~D 104 (119)
T cd02067 89 AIVTRDFKFLKEIGVD 104 (119)
T ss_pred CCCChhHHHHHHcCCe
Confidence 888864 33334444
No 181
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=26.63 E-value=3.2e+02 Score=21.56 Aligned_cols=80 Identities=20% Similarity=0.154 Sum_probs=49.7
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCC--------CCCeEEEEeC-CCCchhHHHHHHHHHHhcC-CCeEEEEccccc
Q 020205 96 RIIFLGSQVDDLTADFIISQLLFLDAEDS--------KKDIRLFINS-PGGSVTAGMGIYDAMKLCK-ADVSTICLGLAA 165 (329)
Q Consensus 96 rII~l~g~Id~~~a~~ii~~L~~l~~~~~--------~k~I~L~INS-PGGsV~ag~aIyd~Ir~~~-~pV~t~v~G~AA 165 (329)
.|+.+.|+++-..++.+.+.+..+-...+ .+.|+|.+.. +.=+..+...|.+..+.++ ..+..+..|..-
T Consensus 11 ~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 11 LIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp EEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred EEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46678999999999999999987665443 3566666532 2233444455555555554 455566666555
Q ss_pred hHHHHHHhcC
Q 020205 166 SMGAFLLAAG 175 (329)
Q Consensus 166 Saas~Ia~AG 175 (329)
..-..+-.+|
T Consensus 91 ~v~~~l~~~~ 100 (117)
T PF01740_consen 91 DVRRILERSG 100 (117)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 5554444433
No 182
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=26.57 E-value=1.5e+02 Score=28.01 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=44.2
Q ss_pred EEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEE
Q 020205 99 FLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVST 158 (329)
Q Consensus 99 ~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t 158 (329)
.-+.+|-..+...+..++..++ ..-..+.+|+||+.++++.++-++++..+.-+.+
T Consensus 52 ~atPaiaaG~~~el~r~~~~~d----gr~l~VvVse~~a~~da~sal~~lir~~G~y~~t 107 (245)
T COG3904 52 SATPAIAAGTPAELKRTLKTLD----GRQLPVVVSEPGANVDAASALGRLIRKAGLYIAT 107 (245)
T ss_pred cCCCcccCCCHHHHHHhhhhcc----CceeeEEEcCCCCCccHHHHHHHHHhccCceeEE
Confidence 3456676666677777766544 4678889999999999999999999999877766
No 183
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=25.91 E-value=48 Score=22.89 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCceecHHHHHHcCCceee
Q 020205 239 RDNFMDAWEAKEYGLVDAV 257 (329)
Q Consensus 239 ~d~~lta~EAve~GLID~I 257 (329)
....|+-+||++.||||.-
T Consensus 18 tg~~lsv~~A~~~glId~~ 36 (45)
T PF00681_consen 18 TGERLSVEEAIQRGLIDSD 36 (45)
T ss_dssp TTEEEEHHHHHHTTSS-HH
T ss_pred CCeEEcHHHHHHCCCcCHH
Confidence 4567999999999999964
No 184
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=25.73 E-value=1.8e+02 Score=27.66 Aligned_cols=65 Identities=22% Similarity=0.171 Sum_probs=44.1
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCchhHHHHHHHHHHhcCCCeEEEEc
Q 020205 96 RIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFI-NSPGGSVTAGMGIYDAMKLCKADVSTICL 161 (329)
Q Consensus 96 rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~I-NSPGGsV~ag~aIyd~Ir~~~~pV~t~v~ 161 (329)
||+|+|..+-..-...+...|..+..+.+.+-+...- |.-||. --...+++.|.....++.|...
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~-gl~~~~~~~L~~~G~D~iTlGN 66 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGK-GITPKIAKELLSAGVDVITMGN 66 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCC-CCCHHHHHHHHhcCCCEEEecc
Confidence 6899998888877777888888777654433222222 445552 1236889999999999888754
No 185
>PRK06091 membrane protein FdrA; Validated
Probab=24.93 E-value=1.6e+02 Score=31.47 Aligned_cols=52 Identities=25% Similarity=0.380 Sum_probs=41.6
Q ss_pred HHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccc
Q 020205 112 IISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAA 165 (329)
Q Consensus 112 ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AA 165 (329)
+...|.++..+...+.|.||+-=|+-.+.. .+.+++++.++||+++..|.-.
T Consensus 240 ~~D~L~~L~~DP~TkvIvly~kppaE~v~~--~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 240 ALTALEMLSADEKSEVIAFVSKPPAEAVRL--KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHHHhhCCCCcEEEEEEecCchHHHH--HHHHHHhhCCCCEEEEEecCCc
Confidence 445666777777889999999778877775 8888888889999999988654
No 186
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=24.89 E-value=3.5e+02 Score=21.38 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=49.6
Q ss_pred cEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeC-CCCchhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHh
Q 020205 96 RIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINS-PGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLA 173 (329)
Q Consensus 96 rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INS-PGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AASaas~Ia~ 173 (329)
++.+++..++. +.+.+.+...+ .++ +-|.+ .+........+.+.+|.....+.+++.|..++...-.++
T Consensus 30 ~v~~~d~~~~~---~~l~~~~~~~~-----pd~-V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l 99 (121)
T PF02310_consen 30 EVDILDANVPP---EELVEALRAER-----PDV-VGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEIL 99 (121)
T ss_dssp EEEEEESSB-H---HHHHHHHHHTT-----CSE-EEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHH
T ss_pred eEEEECCCCCH---HHHHHHHhcCC-----CcE-EEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHh
Confidence 46677766654 55555554322 233 55666 888899999999999999889999999998887776543
No 187
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=24.10 E-value=2e+02 Score=24.78 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=32.3
Q ss_pred cCcEEEEccccChh------HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCc--hhHHHHHHHHHH
Q 020205 94 RQRIIFLGSQVDDL------TADFIISQLLFLDAEDSKKDIRLFINSPGGS--VTAGMGIYDAMK 150 (329)
Q Consensus 94 ~~rII~l~g~Id~~------~a~~ii~~L~~l~~~~~~k~I~L~INSPGGs--V~ag~aIyd~Ir 150 (329)
...+-|.--+|++. ..+.|++.+..+ .+.-.|++||-.|. -+.++.||++|+
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-----p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-----PKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHHHHHHHHHHHTS------TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45566766666553 445555555543 24677788888877 688999999986
No 188
>smart00250 PLEC Plectin repeat.
Probab=22.96 E-value=54 Score=21.72 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.1
Q ss_pred CceecHHHHHHcCCceee
Q 020205 240 DNFMDAWEAKEYGLVDAV 257 (329)
Q Consensus 240 d~~lta~EAve~GLID~I 257 (329)
..-||-.||++.||||..
T Consensus 19 ~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 19 GQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCcCHHHHHHcCCCCcc
Confidence 446899999999999964
No 189
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=21.25 E-value=1.6e+02 Score=27.29 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhc
Q 020205 108 TADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLC 152 (329)
Q Consensus 108 ~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~ 152 (329)
-...|.++++.+..-...+.|-+|++.++|.|+.+.-|-++++.=
T Consensus 30 Qs~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~g 74 (200)
T KOG3093|consen 30 QSEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDG 74 (200)
T ss_pred HHHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcC
Confidence 344555555554433457899999999999999987777777654
No 190
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=21.12 E-value=4.3e+02 Score=22.30 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=35.8
Q ss_pred CcEEEEccccChh---HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeE
Q 020205 95 QRIIFLGSQVDDL---TADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVS 157 (329)
Q Consensus 95 ~rII~l~g~Id~~---~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~ 157 (329)
.+|..+++.-+.. ..++|.+.+..+. +..+.|.+..+= ||++......++.++.-+..++
T Consensus 28 ~~i~~~gg~~d~~~gt~~~~I~~ai~~~~--~~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~~~~~v 90 (125)
T TIGR02364 28 VTIISAGGTDDGRLGTSPDKIIEAIEKAD--NEADGVLIFYDL-GSAVMNAEMAVELLEDEDRDKV 90 (125)
T ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhc--CCCCCEEEEEcC-CCcHhHHHHHHHHhccccccEE
Confidence 4566666554433 2344555555432 225788888888 9999877666677664433333
No 191
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=20.77 E-value=2.6e+02 Score=21.93 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=39.6
Q ss_pred hhcCcEEEEccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCchhHHHHHHHHHHhcCCCeEEEEccccch
Q 020205 92 LLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAAS 166 (329)
Q Consensus 92 ll~~rII~l~g~Id~~~a~~ii~~L~~l~~~~~~k~I~L~INSPGGsV~ag~aIyd~Ir~~~~pV~t~v~G~AAS 166 (329)
+|.+++|++.|+=+......+.+.+ ...-....|. .|+. ||. ........+...+.|+.+..++-...
T Consensus 1 fFa~~vIlVEG~tE~~~l~~~~~~~---~~~~~~~~i~-ii~~-gG~--~~~~~~~ll~~~~i~~~vi~D~D~~~ 68 (97)
T cd01026 1 FFADKVILVEGDSEEILLPALAKKL---GLDLDEAGIS-IIPV-GGK--NFKPFIKLLNALGIPVAVLTDLDAKR 68 (97)
T ss_pred CCCCeEEEEecHHHHHHHHHHHHHh---CCCHHHCCEE-EEEe-CCc--chHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 4788999998876554444444333 1111123333 3555 454 34445678888888988888764433
No 192
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.42 E-value=2.3e+02 Score=25.15 Aligned_cols=37 Identities=24% Similarity=0.151 Sum_probs=24.9
Q ss_pred cccChhHHHHHHHHHHh-hhhcCCC-CCeEEEEeCCCCc
Q 020205 102 SQVDDLTADFIISQLLF-LDAEDSK-KDIRLFINSPGGS 138 (329)
Q Consensus 102 g~Id~~~a~~ii~~L~~-l~~~~~~-k~I~L~INSPGGs 138 (329)
|.|+=+.+..+.+++.. |+.+++. ..-+|.+.|||-+
T Consensus 47 g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGld 85 (153)
T COG0779 47 GGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGLD 85 (153)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCCC
Confidence 66666667666666653 4444543 4677999999987
Done!