Query 020206
Match_columns 329
No_of_seqs 150 out of 1656
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:53:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2.5E-39 5.5E-44 326.5 32.9 316 2-322 206-533 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 3.6E-40 7.8E-45 318.2 23.8 286 2-291 178-496 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.4E-37 1.4E-41 266.8 14.0 249 2-254 18-282 (287)
4 PRK04841 transcriptional regul 99.9 7.4E-21 1.6E-25 190.6 22.8 276 2-294 31-336 (903)
5 COG2909 MalT ATP-dependent tra 99.9 2.3E-20 4.9E-25 173.6 19.4 275 2-294 36-342 (894)
6 COG3899 Predicted ATPase [Gene 99.6 1.6E-13 3.5E-18 134.2 18.4 226 83-319 153-407 (849)
7 PRK00411 cdc6 cell division co 99.5 1.2E-11 2.6E-16 112.7 23.2 258 3-271 55-358 (394)
8 PF05729 NACHT: NACHT domain 99.5 1.4E-12 3E-17 103.9 12.7 142 4-152 1-163 (166)
9 TIGR03015 pepcterm_ATPase puta 99.5 7.2E-12 1.6E-16 108.1 17.9 179 3-187 43-242 (269)
10 TIGR00635 ruvB Holliday juncti 99.4 6.4E-12 1.4E-16 110.4 15.7 138 131-276 151-294 (305)
11 PRK00080 ruvB Holliday junctio 99.4 3.7E-12 8.1E-17 112.8 12.5 137 131-275 172-314 (328)
12 TIGR02928 orc1/cdc6 family rep 99.3 2.1E-09 4.5E-14 97.0 25.0 259 3-272 40-351 (365)
13 PF01637 Arch_ATPase: Archaeal 99.3 2.3E-11 4.9E-16 102.5 11.6 178 3-183 20-234 (234)
14 COG2256 MGS1 ATPase related to 99.3 9.2E-11 2E-15 101.8 13.1 155 3-185 48-214 (436)
15 COG3903 Predicted ATPase [Gene 99.3 8.4E-12 1.8E-16 108.7 6.2 283 2-294 13-318 (414)
16 PF13401 AAA_22: AAA domain; P 99.1 4.8E-10 1E-14 85.6 9.6 115 2-122 3-126 (131)
17 PRK06893 DNA replication initi 99.1 2.1E-09 4.5E-14 90.2 14.0 154 3-187 39-207 (229)
18 PF13173 AAA_14: AAA domain 99.1 1.1E-09 2.5E-14 83.1 9.8 119 3-143 2-126 (128)
19 PF14516 AAA_35: AAA-like doma 99.0 5E-08 1.1E-12 86.3 19.6 261 3-286 31-329 (331)
20 TIGR03420 DnaA_homol_Hda DnaA 99.0 2E-08 4.3E-13 84.3 16.1 154 3-187 38-205 (226)
21 TIGR00678 holB DNA polymerase 99.0 2.9E-08 6.4E-13 80.7 16.1 148 3-178 14-186 (188)
22 PRK07003 DNA polymerase III su 99.0 6.4E-08 1.4E-12 91.7 20.1 97 84-182 119-220 (830)
23 PRK14961 DNA polymerase III su 99.0 5.8E-08 1.3E-12 87.1 18.8 99 84-184 119-221 (363)
24 PRK14087 dnaA chromosomal repl 99.0 1.3E-07 2.8E-12 86.9 20.7 166 4-187 142-323 (450)
25 PF00308 Bac_DnaA: Bacterial d 99.0 1.7E-08 3.7E-13 83.9 13.3 162 4-187 35-212 (219)
26 PRK14949 DNA polymerase III su 99.0 1.4E-07 3.1E-12 91.1 20.7 100 83-184 118-221 (944)
27 PRK14963 DNA polymerase III su 98.9 1.8E-07 3.9E-12 86.9 19.8 171 4-184 37-218 (504)
28 PRK12402 replication factor C 98.9 1.7E-07 3.8E-12 83.5 19.3 99 85-185 126-228 (337)
29 PRK06645 DNA polymerase III su 98.9 2E-07 4.3E-12 86.3 19.8 100 83-184 127-230 (507)
30 PRK14960 DNA polymerase III su 98.9 1.6E-07 3.4E-12 88.1 19.1 99 83-183 117-219 (702)
31 KOG2028 ATPase related to the 98.9 1.5E-08 3.2E-13 87.1 11.3 153 3-179 162-332 (554)
32 PRK08727 hypothetical protein; 98.9 3.8E-08 8.3E-13 82.7 13.7 153 4-187 42-208 (233)
33 PRK08084 DNA replication initi 98.9 6.2E-08 1.3E-12 81.6 14.1 154 3-187 45-213 (235)
34 PRK13342 recombination factor 98.9 8.9E-08 1.9E-12 87.5 16.1 157 3-187 36-200 (413)
35 PRK09087 hypothetical protein; 98.9 5.7E-08 1.2E-12 81.0 13.5 145 3-187 44-199 (226)
36 PRK12323 DNA polymerase III su 98.9 3.1E-07 6.7E-12 86.0 19.5 100 83-184 123-226 (700)
37 PRK14964 DNA polymerase III su 98.9 3.3E-07 7.2E-12 84.2 19.3 158 4-184 36-218 (491)
38 PRK05642 DNA replication initi 98.9 6.7E-08 1.5E-12 81.2 13.3 153 4-187 46-212 (234)
39 PRK00440 rfc replication facto 98.9 4E-07 8.6E-12 80.5 18.9 164 3-185 38-205 (319)
40 PRK04195 replication factor C 98.8 2.4E-07 5.1E-12 86.4 17.9 160 3-188 39-207 (482)
41 PRK14962 DNA polymerase III su 98.8 5.2E-07 1.1E-11 83.2 19.6 101 83-185 116-221 (472)
42 PRK14958 DNA polymerase III su 98.8 3E-07 6.5E-12 85.6 18.0 158 4-184 39-221 (509)
43 PRK00149 dnaA chromosomal repl 98.8 5.9E-07 1.3E-11 83.1 19.9 162 4-187 149-326 (450)
44 PRK14956 DNA polymerase III su 98.8 3.9E-07 8.4E-12 83.0 17.5 100 83-184 120-223 (484)
45 PLN03025 replication factor C 98.8 3.2E-07 6.9E-12 81.0 16.7 164 3-185 34-202 (319)
46 PRK08903 DnaA regulatory inact 98.8 1.6E-07 3.4E-12 78.9 14.1 150 3-187 42-203 (227)
47 COG1474 CDC6 Cdc6-related prot 98.8 5.9E-07 1.3E-11 80.1 18.3 255 5-271 44-334 (366)
48 PRK14957 DNA polymerase III su 98.8 6.3E-07 1.4E-11 83.6 19.1 100 83-184 118-221 (546)
49 PRK05564 DNA polymerase III su 98.8 5.1E-07 1.1E-11 79.6 17.7 154 3-181 26-188 (313)
50 PRK14951 DNA polymerase III su 98.8 7.9E-07 1.7E-11 84.1 19.8 99 84-184 124-226 (618)
51 PRK14086 dnaA chromosomal repl 98.8 1.4E-06 3.1E-11 81.6 21.1 161 5-187 316-492 (617)
52 PRK08691 DNA polymerase III su 98.8 3.5E-07 7.6E-12 86.5 17.0 100 83-184 118-221 (709)
53 PRK07471 DNA polymerase III su 98.8 1.1E-06 2.4E-11 78.4 19.0 96 83-184 140-239 (365)
54 TIGR02397 dnaX_nterm DNA polym 98.8 1.6E-06 3.4E-11 77.9 19.9 101 84-186 117-221 (355)
55 PRK09112 DNA polymerase III su 98.8 7.3E-07 1.6E-11 79.2 17.0 97 83-183 140-240 (351)
56 PRK07940 DNA polymerase III su 98.7 7.2E-07 1.6E-11 80.3 16.7 92 83-181 116-211 (394)
57 PRK14088 dnaA chromosomal repl 98.7 4.4E-07 9.5E-12 83.3 14.7 162 5-187 132-309 (440)
58 TIGR00362 DnaA chromosomal rep 98.7 4.2E-07 9.2E-12 83.0 14.6 162 4-187 137-314 (405)
59 PRK12422 chromosomal replicati 98.7 9.3E-07 2E-11 81.0 16.4 157 4-182 142-312 (445)
60 PRK07994 DNA polymerase III su 98.7 5.6E-07 1.2E-11 85.3 15.1 100 83-184 118-221 (647)
61 PRK07764 DNA polymerase III su 98.7 4.1E-06 8.9E-11 82.0 21.2 100 83-184 119-222 (824)
62 PRK14952 DNA polymerase III su 98.7 4.1E-06 8.9E-11 79.0 20.2 99 84-184 118-220 (584)
63 PRK14969 DNA polymerase III su 98.7 1.4E-06 3.1E-11 81.6 17.0 100 83-184 118-221 (527)
64 cd00009 AAA The AAA+ (ATPases 98.7 3.5E-07 7.5E-12 70.8 11.0 36 3-38 19-54 (151)
65 PRK05896 DNA polymerase III su 98.7 2.4E-06 5.2E-11 80.0 18.1 99 86-186 121-223 (605)
66 PRK14950 DNA polymerase III su 98.7 3.8E-06 8.3E-11 80.1 19.9 102 84-187 120-225 (585)
67 PRK14953 DNA polymerase III su 98.7 6.5E-06 1.4E-10 76.3 20.8 102 83-186 118-223 (486)
68 PRK05707 DNA polymerase III su 98.7 1.1E-06 2.3E-11 77.4 14.9 92 86-183 108-203 (328)
69 PRK13341 recombination factor 98.6 7.9E-07 1.7E-11 85.9 15.0 155 3-186 52-220 (725)
70 PRK14955 DNA polymerase III su 98.6 2.7E-06 5.9E-11 77.3 17.7 100 84-185 127-230 (397)
71 PRK09111 DNA polymerase III su 98.6 3.8E-06 8.3E-11 79.6 19.2 101 84-186 132-236 (598)
72 PRK06620 hypothetical protein; 98.6 6.8E-07 1.5E-11 73.9 12.1 140 4-187 45-193 (214)
73 PRK14970 DNA polymerase III su 98.6 8E-06 1.7E-10 73.7 19.8 163 3-187 39-213 (367)
74 PRK14959 DNA polymerase III su 98.6 5E-06 1.1E-10 78.3 18.6 102 83-186 118-224 (624)
75 PF05496 RuvB_N: Holliday junc 98.6 2.9E-07 6.3E-12 75.0 9.1 152 4-187 51-225 (233)
76 PTZ00112 origin recognition co 98.6 1.7E-06 3.7E-11 83.1 15.5 217 4-233 782-1030(1164)
77 TIGR01242 26Sp45 26S proteasom 98.6 1E-06 2.3E-11 79.2 13.5 150 3-177 156-328 (364)
78 PRK06647 DNA polymerase III su 98.6 1.1E-05 2.3E-10 76.2 20.6 101 83-185 118-222 (563)
79 TIGR02881 spore_V_K stage V sp 98.6 1.2E-06 2.6E-11 75.1 12.8 131 3-153 42-192 (261)
80 PRK08451 DNA polymerase III su 98.6 9.8E-06 2.1E-10 75.4 19.4 99 84-184 117-219 (535)
81 PRK07133 DNA polymerase III su 98.5 1.9E-05 4E-10 75.7 19.8 101 83-185 117-221 (725)
82 PRK14954 DNA polymerase III su 98.5 2.4E-05 5.1E-10 74.4 20.4 98 84-183 127-228 (620)
83 PF00004 AAA: ATPase family as 98.5 2.1E-06 4.5E-11 65.3 11.0 23 6-28 1-23 (132)
84 PRK08116 hypothetical protein; 98.5 9.3E-07 2E-11 75.7 9.9 102 4-122 115-221 (268)
85 COG0593 DnaA ATPase involved i 98.5 3.1E-06 6.7E-11 75.6 13.0 161 3-184 113-287 (408)
86 PRK05563 DNA polymerase III su 98.5 2.6E-05 5.6E-10 73.8 19.7 100 83-184 118-221 (559)
87 PRK14965 DNA polymerase III su 98.5 1.4E-05 3.1E-10 75.8 18.0 97 84-182 119-219 (576)
88 PRK14971 DNA polymerase III su 98.5 2.5E-05 5.5E-10 74.5 19.5 99 84-184 121-223 (614)
89 PRK06305 DNA polymerase III su 98.4 2.2E-05 4.7E-10 72.4 18.2 100 83-184 120-223 (451)
90 PRK14948 DNA polymerase III su 98.4 6E-05 1.3E-09 72.0 21.7 101 84-186 121-225 (620)
91 PF10443 RNA12: RNA12 protein; 98.4 9.1E-05 2E-09 66.2 21.2 106 84-190 148-285 (431)
92 COG1373 Predicted ATPase (AAA+ 98.4 3.4E-05 7.4E-10 70.0 19.1 220 5-269 39-268 (398)
93 PRK08181 transposase; Validate 98.4 1.4E-06 2.9E-11 74.4 9.5 99 4-122 107-209 (269)
94 COG3267 ExeA Type II secretory 98.4 1.7E-05 3.7E-10 65.5 15.1 176 4-186 52-248 (269)
95 PRK08769 DNA polymerase III su 98.4 1.9E-05 4.2E-10 69.0 15.9 92 84-183 113-208 (319)
96 PF05621 TniB: Bacterial TniB 98.4 1.5E-05 3.3E-10 68.0 14.7 177 4-184 62-262 (302)
97 PRK03992 proteasome-activating 98.4 7.2E-06 1.6E-10 74.3 13.6 150 3-177 165-337 (389)
98 TIGR03689 pup_AAA proteasome A 98.4 8.1E-06 1.7E-10 75.6 13.9 136 3-152 216-378 (512)
99 TIGR02880 cbbX_cfxQ probable R 98.4 1.1E-05 2.4E-10 69.9 14.0 128 5-152 60-208 (284)
100 COG1222 RPT1 ATP-dependent 26S 98.4 8.5E-06 1.9E-10 70.3 12.7 149 4-179 186-359 (406)
101 CHL00181 cbbX CbbX; Provisiona 98.4 3.3E-05 7.2E-10 66.9 16.3 129 5-153 61-210 (287)
102 PHA02544 44 clamp loader, smal 98.4 1.5E-05 3.3E-10 70.4 14.5 151 4-178 44-204 (316)
103 PRK12377 putative replication 98.3 4E-06 8.6E-11 70.7 10.1 100 4-122 102-206 (248)
104 PRK06871 DNA polymerase III su 98.3 3.3E-05 7.2E-10 67.7 15.9 88 84-178 107-198 (325)
105 PF01695 IstB_IS21: IstB-like 98.3 9.3E-07 2E-11 70.9 5.7 36 3-38 47-82 (178)
106 KOG0989 Replication factor C, 98.3 4.3E-05 9.3E-10 64.7 15.6 169 2-187 56-234 (346)
107 PTZ00454 26S protease regulato 98.3 8.5E-06 1.8E-10 73.6 11.7 149 3-177 179-351 (398)
108 CHL00176 ftsH cell division pr 98.3 2.7E-05 5.9E-10 74.4 15.6 157 3-184 216-396 (638)
109 COG2255 RuvB Holliday junction 98.3 1.9E-05 4.1E-10 66.2 12.4 152 118-276 158-316 (332)
110 PRK06526 transposase; Provisio 98.3 2.3E-06 4.9E-11 72.6 7.3 34 3-36 98-131 (254)
111 PRK06964 DNA polymerase III su 98.3 0.00018 3.8E-09 63.6 19.3 90 84-183 132-225 (342)
112 PRK09183 transposase/IS protei 98.3 4.9E-06 1.1E-10 71.0 9.3 34 4-37 103-136 (259)
113 PRK08058 DNA polymerase III su 98.2 8.4E-05 1.8E-09 65.8 16.6 68 84-151 110-181 (329)
114 PRK07399 DNA polymerase III su 98.2 0.00021 4.6E-09 62.7 18.9 173 3-185 26-223 (314)
115 PRK07993 DNA polymerase III su 98.2 4.2E-05 9E-10 67.6 14.5 90 83-179 107-200 (334)
116 smart00382 AAA ATPases associa 98.2 5.7E-06 1.2E-10 63.4 8.1 36 3-38 2-37 (148)
117 CHL00195 ycf46 Ycf46; Provisio 98.2 8.1E-06 1.8E-10 75.5 10.2 153 3-178 259-430 (489)
118 PRK06090 DNA polymerase III su 98.2 0.00021 4.5E-09 62.6 18.4 90 84-183 108-201 (319)
119 cd01128 rho_factor Transcripti 98.2 2.6E-06 5.6E-11 71.9 6.4 91 3-95 16-114 (249)
120 PF13191 AAA_16: AAA ATPase do 98.2 1.7E-06 3.6E-11 70.1 4.9 29 2-30 23-51 (185)
121 TIGR02639 ClpA ATP-dependent C 98.2 4.1E-05 8.9E-10 75.1 14.3 150 4-175 204-383 (731)
122 TIGR03345 VI_ClpV1 type VI sec 98.2 5.6E-05 1.2E-09 75.0 15.2 154 4-178 209-391 (852)
123 COG1484 DnaC DNA replication p 98.2 1.1E-05 2.4E-10 68.5 9.0 71 4-93 106-176 (254)
124 PRK07952 DNA replication prote 98.2 1.6E-05 3.4E-10 66.9 9.7 73 4-94 100-172 (244)
125 PRK08939 primosomal protein Dn 98.2 1.7E-05 3.7E-10 69.2 10.3 100 3-122 156-261 (306)
126 KOG0735 AAA+-type ATPase [Post 98.2 0.00017 3.7E-09 67.7 16.9 162 3-184 431-617 (952)
127 PRK06835 DNA replication prote 98.1 1.3E-05 2.8E-10 70.5 9.3 35 4-38 184-218 (329)
128 PLN00020 ribulose bisphosphate 98.1 7.4E-05 1.6E-09 65.6 13.6 150 2-178 147-333 (413)
129 PTZ00361 26 proteosome regulat 98.1 1.8E-05 3.9E-10 72.1 10.0 150 3-178 217-390 (438)
130 TIGR01241 FtsH_fam ATP-depende 98.1 6.8E-05 1.5E-09 70.4 14.0 156 4-184 89-268 (495)
131 PRK09376 rho transcription ter 98.1 5.9E-06 1.3E-10 73.2 6.4 88 4-94 170-266 (416)
132 KOG0744 AAA+-type ATPase [Post 98.1 1.1E-05 2.4E-10 68.6 7.7 35 3-37 177-215 (423)
133 COG2812 DnaX DNA polymerase II 98.1 4E-05 8.7E-10 70.6 12.0 171 6-189 41-226 (515)
134 PRK04132 replication factor C 98.1 0.00022 4.8E-09 69.9 16.9 160 8-187 569-735 (846)
135 TIGR00767 rho transcription te 98.1 1.2E-05 2.6E-10 71.5 7.4 91 4-96 169-267 (415)
136 PRK06921 hypothetical protein; 98.1 2E-05 4.3E-10 67.5 8.4 36 3-38 117-153 (266)
137 PRK08699 DNA polymerase III su 98.1 0.00017 3.6E-09 63.6 14.3 84 86-179 115-202 (325)
138 COG0466 Lon ATP-dependent Lon 98.0 2.6E-05 5.6E-10 73.2 9.3 137 2-152 349-508 (782)
139 PF05673 DUF815: Protein of un 98.0 6.3E-05 1.4E-09 62.4 10.3 28 4-31 53-80 (249)
140 CHL00095 clpC Clp protease ATP 98.0 0.00011 2.4E-09 73.0 13.8 150 4-175 201-379 (821)
141 PF04665 Pox_A32: Poxvirus A32 98.0 3.1E-05 6.7E-10 64.5 8.2 34 5-38 15-48 (241)
142 KOG0741 AAA+-type ATPase [Post 98.0 0.00032 7E-09 63.8 14.9 128 3-151 538-685 (744)
143 PTZ00202 tuzin; Provisional 98.0 0.00048 1E-08 61.9 15.7 137 3-152 286-434 (550)
144 KOG0733 Nuclear AAA ATPase (VC 98.0 5.6E-05 1.2E-09 69.7 9.9 149 3-177 223-396 (802)
145 cd01131 PilT Pilus retraction 98.0 3E-05 6.4E-10 63.5 7.4 107 5-123 3-110 (198)
146 PF07728 AAA_5: AAA domain (dy 97.9 8.8E-06 1.9E-10 62.6 3.9 22 6-27 2-23 (139)
147 TIGR02640 gas_vesic_GvpN gas v 97.9 0.00021 4.6E-09 61.2 12.5 24 4-27 22-45 (262)
148 TIGR02903 spore_lon_C ATP-depe 97.9 0.00016 3.5E-09 69.3 12.5 52 131-184 345-396 (615)
149 TIGR01243 CDC48 AAA family ATP 97.9 0.00026 5.6E-09 69.8 13.9 155 3-183 487-664 (733)
150 PF02562 PhoH: PhoH-like prote 97.9 7E-05 1.5E-09 61.0 8.1 112 3-122 19-156 (205)
151 PRK04296 thymidine kinase; Pro 97.9 3.5E-05 7.5E-10 62.7 6.3 110 4-122 3-116 (190)
152 PF13207 AAA_17: AAA domain; P 97.9 1.4E-05 3.1E-10 59.8 3.7 23 5-27 1-23 (121)
153 PRK10536 hypothetical protein; 97.9 0.00012 2.7E-09 61.3 9.6 117 3-122 74-213 (262)
154 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00041 8.8E-09 69.0 14.8 26 5-30 598-623 (852)
155 TIGR03346 chaperone_ClpB ATP-d 97.9 0.00038 8.1E-09 69.6 14.6 131 4-151 195-348 (852)
156 PF13177 DNA_pol3_delta2: DNA 97.9 0.00039 8.5E-09 54.9 11.8 120 3-140 19-162 (162)
157 TIGR00602 rad24 checkpoint pro 97.8 0.00033 7.1E-09 66.8 13.1 57 131-187 266-327 (637)
158 cd01120 RecA-like_NTPases RecA 97.8 6.2E-05 1.3E-09 59.3 7.1 34 5-38 1-34 (165)
159 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00043 9.2E-09 64.1 13.0 150 6-178 548-719 (802)
160 KOG0730 AAA+-type ATPase [Post 97.8 0.00011 2.3E-09 68.5 9.2 151 3-179 468-639 (693)
161 TIGR01243 CDC48 AAA family ATP 97.8 0.00018 3.8E-09 70.9 11.3 152 3-179 212-383 (733)
162 COG1223 Predicted ATPase (AAA+ 97.8 0.0003 6.4E-09 58.4 10.4 149 3-177 151-319 (368)
163 PF10236 DAP3: Mitochondrial r 97.8 0.00041 8.8E-09 60.8 12.1 48 133-180 258-306 (309)
164 TIGR02639 ClpA ATP-dependent C 97.8 0.00015 3.3E-09 71.2 10.3 24 5-28 486-509 (731)
165 PRK06762 hypothetical protein; 97.8 0.00087 1.9E-08 53.2 12.9 25 3-27 2-26 (166)
166 PF00448 SRP54: SRP54-type pro 97.8 5.7E-05 1.2E-09 61.6 6.0 57 3-63 1-58 (196)
167 KOG2543 Origin recognition com 97.8 0.0004 8.6E-09 60.8 11.3 141 5-152 32-193 (438)
168 PRK10865 protein disaggregatio 97.8 0.00072 1.6E-08 67.5 14.7 26 4-29 200-225 (857)
169 PRK12608 transcription termina 97.8 0.00012 2.5E-09 64.9 8.1 89 4-94 134-230 (380)
170 PRK11034 clpA ATP-dependent Cl 97.7 0.00047 1E-08 67.4 12.7 131 4-152 208-362 (758)
171 PRK08118 topology modulation p 97.7 3.4E-05 7.5E-10 61.3 4.1 25 4-28 2-26 (167)
172 KOG2004 Mitochondrial ATP-depe 97.7 8.9E-05 1.9E-09 69.6 7.2 138 2-153 437-597 (906)
173 COG1618 Predicted nucleotide k 97.7 4.9E-05 1.1E-09 58.3 4.2 26 5-30 7-32 (179)
174 TIGR01420 pilT_fam pilus retra 97.7 0.00015 3.2E-09 64.7 8.0 107 4-122 123-230 (343)
175 COG4088 Predicted nucleotide k 97.7 0.00014 3E-09 58.2 6.8 30 4-33 2-31 (261)
176 PHA00729 NTP-binding motif con 97.7 0.00028 6E-09 58.2 8.9 26 3-28 17-42 (226)
177 PF07693 KAP_NTPase: KAP famil 97.7 0.0021 4.5E-08 57.0 14.9 59 2-60 19-80 (325)
178 PRK07261 topology modulation p 97.7 0.00024 5.1E-09 56.7 8.0 23 5-27 2-24 (171)
179 COG0470 HolB ATPase involved i 97.7 0.001 2.3E-08 58.8 13.0 117 3-139 24-168 (325)
180 PF13604 AAA_30: AAA domain; P 97.7 0.00035 7.6E-09 57.1 9.1 103 2-122 17-131 (196)
181 cd00561 CobA_CobO_BtuR ATP:cor 97.7 0.00044 9.6E-09 53.9 9.2 117 5-123 4-139 (159)
182 PRK11889 flhF flagellar biosyn 97.7 0.00034 7.4E-09 62.3 9.4 37 2-38 240-276 (436)
183 KOG0743 AAA+-type ATPase [Post 97.7 0.0011 2.4E-08 59.4 12.6 149 6-189 238-415 (457)
184 KOG0735 AAA+-type ATPase [Post 97.6 0.0014 3.1E-08 61.8 13.7 148 6-179 704-872 (952)
185 TIGR00763 lon ATP-dependent pr 97.6 0.00038 8.1E-09 68.9 10.6 29 3-31 347-375 (775)
186 COG0542 clpA ATP-binding subun 97.6 0.00012 2.7E-09 70.3 6.7 93 5-108 523-619 (786)
187 PRK06067 flagellar accessory p 97.6 0.00022 4.7E-09 60.1 7.5 36 3-38 25-60 (234)
188 PRK11331 5-methylcytosine-spec 97.6 0.00016 3.4E-09 65.6 6.8 85 3-95 194-283 (459)
189 PRK09361 radB DNA repair and r 97.6 0.00021 4.6E-09 59.8 7.0 36 3-38 23-58 (225)
190 TIGR01359 UMP_CMP_kin_fam UMP- 97.6 0.00065 1.4E-08 54.8 9.6 23 5-27 1-23 (183)
191 PRK14974 cell division protein 97.6 0.00087 1.9E-08 59.1 10.6 35 3-37 140-174 (336)
192 COG2607 Predicted ATPase (AAA+ 97.5 0.00078 1.7E-08 55.3 9.3 33 5-37 87-119 (287)
193 cd01394 radB RadB. The archaea 97.5 0.00027 5.8E-09 58.9 6.8 36 3-38 19-54 (218)
194 KOG0739 AAA+-type ATPase [Post 97.5 0.00099 2.1E-08 56.5 9.9 150 4-178 167-336 (439)
195 PRK11034 clpA ATP-dependent Cl 97.5 0.0013 2.8E-08 64.4 12.3 24 5-28 490-513 (758)
196 PF07724 AAA_2: AAA domain (Cd 97.5 0.00028 6.1E-09 56.2 6.5 36 3-38 3-39 (171)
197 PF03215 Rad17: Rad17 cell cyc 97.5 0.00087 1.9E-08 62.7 10.6 33 3-37 45-77 (519)
198 COG0464 SpoVK ATPases of the A 97.5 0.00083 1.8E-08 63.2 10.6 150 3-175 276-445 (494)
199 PRK10787 DNA-binding ATP-depen 97.5 0.00082 1.8E-08 66.2 10.7 136 3-152 349-506 (784)
200 TIGR01650 PD_CobS cobaltochela 97.5 0.0071 1.5E-07 52.9 15.2 28 4-31 65-92 (327)
201 PF01583 APS_kinase: Adenylyls 97.5 0.00021 4.6E-09 55.5 5.3 36 3-38 2-37 (156)
202 PRK08233 hypothetical protein; 97.5 0.0001 2.2E-09 59.4 3.6 28 1-28 1-28 (182)
203 cd03238 ABC_UvrA The excision 97.5 0.0012 2.6E-08 52.8 9.6 22 3-24 21-42 (176)
204 PRK10733 hflB ATP-dependent me 97.5 0.0018 4E-08 62.6 12.6 146 4-175 186-355 (644)
205 PRK00771 signal recognition pa 97.5 0.001 2.2E-08 60.8 10.3 36 2-37 94-129 (437)
206 cd01122 GP4d_helicase GP4d_hel 97.5 0.0016 3.5E-08 56.1 11.1 36 3-38 30-66 (271)
207 KOG0991 Replication factor C, 97.5 0.0019 4.2E-08 52.8 10.5 27 2-28 47-73 (333)
208 CHL00095 clpC Clp protease ATP 97.4 0.00078 1.7E-08 67.1 10.0 92 5-107 541-636 (821)
209 COG1136 SalX ABC-type antimicr 97.4 0.0013 2.9E-08 54.2 9.7 55 73-128 149-209 (226)
210 PF08433 KTI12: Chromatin asso 97.4 0.00057 1.2E-08 58.5 7.6 35 4-38 2-36 (270)
211 cd00983 recA RecA is a bacter 97.4 0.00026 5.7E-09 61.9 5.7 36 3-38 55-90 (325)
212 cd02027 APSK Adenosine 5'-phos 97.4 0.0011 2.4E-08 51.6 8.7 25 5-29 1-25 (149)
213 cd03214 ABC_Iron-Siderophores_ 97.4 0.00062 1.3E-08 54.9 7.4 120 3-125 25-161 (180)
214 TIGR02012 tigrfam_recA protein 97.4 0.00026 5.6E-09 61.9 5.4 36 3-38 55-90 (321)
215 PF00910 RNA_helicase: RNA hel 97.4 0.0001 2.2E-09 53.9 2.5 25 6-30 1-25 (107)
216 PTZ00301 uridine kinase; Provi 97.4 0.00018 3.9E-09 59.2 4.2 30 1-30 1-30 (210)
217 KOG0734 AAA+-type ATPase conta 97.4 0.0023 5.1E-08 58.5 11.4 25 3-27 337-361 (752)
218 PF13671 AAA_33: AAA domain; P 97.4 0.00016 3.5E-09 55.8 3.6 24 5-28 1-24 (143)
219 PF13238 AAA_18: AAA domain; P 97.4 0.00016 3.5E-09 54.5 3.5 22 6-27 1-22 (129)
220 cd03115 SRP The signal recogni 97.4 0.0015 3.2E-08 52.2 9.3 34 5-38 2-35 (173)
221 PRK05541 adenylylsulfate kinas 97.4 0.0003 6.5E-09 56.5 5.1 36 3-38 7-42 (176)
222 PRK10865 protein disaggregatio 97.4 0.0017 3.6E-08 64.9 11.4 26 5-30 600-625 (857)
223 KOG0731 AAA+-type ATPase conta 97.4 0.0027 5.8E-08 61.1 12.0 154 3-180 344-521 (774)
224 KOG2227 Pre-initiation complex 97.4 0.0055 1.2E-07 55.3 13.1 180 4-188 176-373 (529)
225 COG2884 FtsE Predicted ATPase 97.4 0.0026 5.6E-08 50.5 9.8 57 73-129 144-204 (223)
226 cd01393 recA_like RecA is a b 97.4 0.00083 1.8E-08 56.2 7.7 36 3-38 19-60 (226)
227 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0013 2.7E-08 65.9 10.1 27 4-30 596-622 (852)
228 PF00485 PRK: Phosphoribulokin 97.3 0.00022 4.7E-09 58.3 4.0 26 5-30 1-26 (194)
229 KOG0727 26S proteasome regulat 97.3 0.003 6.4E-08 52.4 10.2 28 3-30 189-216 (408)
230 PRK09354 recA recombinase A; P 97.3 0.00044 9.6E-09 61.0 5.9 36 3-38 60-95 (349)
231 KOG0736 Peroxisome assembly fa 97.3 0.0094 2E-07 57.0 14.7 68 6-95 708-775 (953)
232 TIGR00708 cobA cob(I)alamin ad 97.3 0.0013 2.8E-08 52.0 7.8 119 4-123 6-141 (173)
233 PRK14722 flhF flagellar biosyn 97.3 0.0033 7.2E-08 56.2 11.3 29 3-31 137-165 (374)
234 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00023 5E-09 57.7 3.7 26 2-27 2-27 (188)
235 PRK12726 flagellar biosynthesi 97.3 0.002 4.3E-08 57.3 9.6 37 2-38 205-241 (407)
236 COG1126 GlnQ ABC-type polar am 97.3 0.0017 3.6E-08 52.7 8.3 55 74-128 144-202 (240)
237 cd02019 NK Nucleoside/nucleoti 97.3 0.00025 5.3E-09 47.2 3.2 23 5-27 1-23 (69)
238 cd00544 CobU Adenosylcobinamid 97.3 0.0032 6.9E-08 50.0 10.0 31 5-38 1-31 (169)
239 PF13245 AAA_19: Part of AAA d 97.3 0.00043 9.3E-09 47.0 4.3 25 3-27 10-34 (76)
240 TIGR00064 ftsY signal recognit 97.3 0.00074 1.6E-08 58.0 6.8 37 2-38 71-107 (272)
241 PRK12723 flagellar biosynthesi 97.3 0.0015 3.3E-08 58.8 9.0 27 2-28 173-199 (388)
242 PF03969 AFG1_ATPase: AFG1-lik 97.3 0.00068 1.5E-08 60.5 6.8 100 4-122 63-167 (362)
243 TIGR02237 recomb_radB DNA repa 97.3 0.00064 1.4E-08 56.2 6.2 36 3-38 12-47 (209)
244 CHL00206 ycf2 Ycf2; Provisiona 97.3 0.0032 7E-08 66.0 12.1 25 3-27 1630-1654(2281)
245 TIGR03499 FlhF flagellar biosy 97.3 0.0012 2.5E-08 57.3 7.9 36 3-38 194-231 (282)
246 cd03247 ABCC_cytochrome_bd The 97.3 0.0033 7.1E-08 50.5 10.0 25 4-28 29-53 (178)
247 cd01133 F1-ATPase_beta F1 ATP 97.3 0.0017 3.6E-08 55.4 8.5 52 4-57 70-121 (274)
248 TIGR02902 spore_lonB ATP-depen 97.3 0.0035 7.7E-08 59.2 11.6 24 4-27 87-110 (531)
249 cd01129 PulE-GspE PulE/GspE Th 97.3 0.0011 2.4E-08 56.8 7.6 90 4-105 81-170 (264)
250 COG4133 CcmA ABC-type transpor 97.3 0.0027 5.9E-08 50.3 9.0 34 4-37 29-62 (209)
251 COG0563 Adk Adenylate kinase a 97.3 0.00065 1.4E-08 54.4 5.8 23 5-27 2-24 (178)
252 PRK13531 regulatory ATPase Rav 97.3 0.0026 5.7E-08 58.4 10.2 26 5-30 41-66 (498)
253 COG4608 AppF ABC-type oligopep 97.3 0.0011 2.5E-08 55.6 7.3 123 3-128 39-176 (268)
254 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0014 3E-08 55.3 7.9 36 3-38 19-60 (235)
255 COG1116 TauB ABC-type nitrate/ 97.2 0.0014 3E-08 54.4 7.5 22 4-25 30-51 (248)
256 PRK06696 uridine kinase; Valid 97.2 0.00049 1.1E-08 57.5 5.0 29 2-30 21-49 (223)
257 KOG0729 26S proteasome regulat 97.2 0.0019 4.2E-08 53.9 8.2 30 4-38 212-241 (435)
258 cd01124 KaiC KaiC is a circadi 97.2 0.00088 1.9E-08 54.2 6.3 34 5-38 1-34 (187)
259 cd01121 Sms Sms (bacterial rad 97.2 0.0014 3.1E-08 58.8 8.1 35 4-38 83-117 (372)
260 cd03216 ABC_Carb_Monos_I This 97.2 0.00059 1.3E-08 54.0 5.1 117 3-126 26-146 (163)
261 PF00625 Guanylate_kin: Guanyl 97.2 0.00046 1E-08 55.8 4.4 36 3-38 2-37 (183)
262 PRK05480 uridine/cytidine kina 97.2 0.00037 8.1E-09 57.6 4.0 26 2-27 5-30 (209)
263 PRK04040 adenylate kinase; Pro 97.2 0.00043 9.4E-09 56.1 4.2 26 3-28 2-27 (188)
264 PF03266 NTPase_1: NTPase; In 97.2 0.00033 7E-09 55.6 3.3 25 6-30 2-26 (168)
265 KOG1969 DNA replication checkp 97.2 0.0012 2.7E-08 62.3 7.5 153 3-177 326-504 (877)
266 PRK05986 cob(I)alamin adenolsy 97.2 0.0019 4.2E-08 51.8 7.7 119 3-123 22-159 (191)
267 PRK14531 adenylate kinase; Pro 97.2 0.0015 3.3E-08 52.7 7.3 24 4-27 3-26 (183)
268 PRK14528 adenylate kinase; Pro 97.2 0.0018 4E-08 52.4 7.5 24 4-27 2-25 (186)
269 COG1066 Sms Predicted ATP-depe 97.2 0.0019 4.2E-08 57.3 8.0 34 4-38 94-127 (456)
270 PF03205 MobB: Molybdopterin g 97.2 0.00067 1.5E-08 52.1 4.7 35 4-38 1-36 (140)
271 PF02374 ArsA_ATPase: Anion-tr 97.2 0.00068 1.5E-08 59.3 5.3 46 4-53 2-47 (305)
272 KOG1970 Checkpoint RAD17-RFC c 97.1 0.012 2.5E-07 54.3 13.0 26 2-27 109-134 (634)
273 PF07726 AAA_3: ATPase family 97.1 0.00025 5.4E-09 52.7 2.1 29 6-34 2-30 (131)
274 PRK07667 uridine kinase; Provi 97.1 0.00081 1.8E-08 54.8 5.3 28 3-30 17-44 (193)
275 PRK00279 adk adenylate kinase; 97.1 0.0018 3.8E-08 53.8 7.4 24 5-28 2-25 (215)
276 PRK06547 hypothetical protein; 97.1 0.00049 1.1E-08 54.8 3.9 26 2-27 14-39 (172)
277 cd03228 ABCC_MRP_Like The MRP 97.1 0.0021 4.5E-08 51.3 7.5 25 4-28 29-53 (171)
278 COG0467 RAD55 RecA-superfamily 97.1 0.0013 2.9E-08 56.3 6.8 36 3-38 23-58 (260)
279 KOG2228 Origin recognition com 97.1 0.013 2.7E-07 50.9 12.3 149 3-152 49-219 (408)
280 cd00227 CPT Chloramphenicol (C 97.1 0.00048 1E-08 55.2 3.7 26 3-28 2-27 (175)
281 PRK10867 signal recognition pa 97.1 0.0045 9.7E-08 56.6 10.3 28 3-30 100-127 (433)
282 TIGR00235 udk uridine kinase. 97.1 0.00051 1.1E-08 56.7 4.0 27 2-28 5-31 (207)
283 PF00406 ADK: Adenylate kinase 97.1 0.00093 2E-08 52.1 5.2 20 8-27 1-20 (151)
284 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.00057 1.2E-08 56.6 4.2 23 3-25 29-51 (213)
285 COG1121 ZnuC ABC-type Mn/Zn tr 97.1 0.0043 9.4E-08 52.1 9.3 53 73-127 146-204 (254)
286 cd02028 UMPK_like Uridine mono 97.1 0.00069 1.5E-08 54.5 4.5 26 5-30 1-26 (179)
287 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0022 4.8E-08 49.5 7.2 103 3-126 26-131 (144)
288 PRK05703 flhF flagellar biosyn 97.1 0.0049 1.1E-07 56.5 10.5 36 3-38 221-258 (424)
289 TIGR01069 mutS2 MutS2 family p 97.1 0.0009 1.9E-08 65.8 6.1 24 3-26 322-345 (771)
290 PRK05917 DNA polymerase III su 97.1 0.032 6.9E-07 48.2 14.7 119 3-139 19-154 (290)
291 PF13481 AAA_25: AAA domain; P 97.1 0.0038 8.2E-08 50.8 8.9 26 4-29 33-58 (193)
292 COG1102 Cmk Cytidylate kinase 97.1 0.00044 9.6E-09 53.2 3.0 24 5-28 2-25 (179)
293 PRK07132 DNA polymerase III su 97.1 0.051 1.1E-06 47.4 16.1 130 3-151 18-161 (299)
294 cd03237 ABC_RNaseL_inhibitor_d 97.1 0.0042 9E-08 52.7 9.3 24 4-27 26-49 (246)
295 PRK00131 aroK shikimate kinase 97.1 0.00053 1.1E-08 54.8 3.7 25 3-27 4-28 (175)
296 PRK03839 putative kinase; Prov 97.1 0.00049 1.1E-08 55.4 3.5 24 5-28 2-25 (180)
297 PRK06217 hypothetical protein; 97.1 0.0028 6E-08 51.2 7.8 24 5-28 3-26 (183)
298 cd01125 repA Hexameric Replica 97.1 0.0055 1.2E-07 51.8 9.9 24 5-28 3-26 (239)
299 PRK13539 cytochrome c biogenes 97.1 0.0043 9.4E-08 51.2 9.1 25 3-27 28-52 (207)
300 smart00534 MUTSac ATPase domai 97.1 0.00087 1.9E-08 54.2 4.9 21 5-25 1-21 (185)
301 TIGR01351 adk adenylate kinase 97.1 0.0024 5.1E-08 52.8 7.5 22 6-27 2-23 (210)
302 TIGR02858 spore_III_AA stage I 97.1 0.0054 1.2E-07 52.5 9.8 112 4-124 112-231 (270)
303 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0013 2.8E-08 52.7 5.6 115 3-137 25-146 (177)
304 COG0572 Udk Uridine kinase [Nu 97.0 0.00086 1.9E-08 54.8 4.5 28 3-30 8-35 (218)
305 TIGR00416 sms DNA repair prote 97.0 0.0021 4.5E-08 59.4 7.5 36 3-38 94-129 (454)
306 cd03223 ABCD_peroxisomal_ALDP 97.0 0.0033 7.1E-08 49.9 7.7 115 3-125 27-151 (166)
307 PRK12724 flagellar biosynthesi 97.0 0.0074 1.6E-07 54.6 10.6 25 3-27 223-247 (432)
308 PRK05800 cobU adenosylcobinami 97.0 0.0089 1.9E-07 47.5 10.1 23 5-27 3-25 (170)
309 COG0003 ArsA Predicted ATPase 97.0 0.0013 2.8E-08 57.6 5.6 49 3-55 2-50 (322)
310 PRK10751 molybdopterin-guanine 97.0 0.0012 2.7E-08 52.3 5.1 29 2-30 5-33 (173)
311 TIGR02525 plasmid_TraJ plasmid 97.0 0.0018 3.8E-08 58.1 6.6 95 4-105 150-246 (372)
312 PTZ00088 adenylate kinase 1; P 97.0 0.0032 7E-08 52.6 7.8 24 4-27 7-30 (229)
313 PLN02200 adenylate kinase fami 97.0 0.00074 1.6E-08 56.7 3.9 26 2-27 42-67 (234)
314 cd03246 ABCC_Protease_Secretio 97.0 0.003 6.4E-08 50.5 7.3 26 3-28 28-53 (173)
315 PRK00889 adenylylsulfate kinas 97.0 0.0013 2.8E-08 52.7 5.1 35 3-37 4-38 (175)
316 PRK11823 DNA repair protein Ra 97.0 0.0026 5.6E-08 58.8 7.7 36 3-38 80-115 (446)
317 PRK12339 2-phosphoglycerate ki 97.0 0.00075 1.6E-08 55.0 3.7 27 1-27 1-27 (197)
318 PRK00625 shikimate kinase; Pro 97.0 0.00068 1.5E-08 54.1 3.4 24 5-28 2-25 (173)
319 TIGR02238 recomb_DMC1 meiotic 97.0 0.0033 7.3E-08 55.1 7.9 52 4-60 97-154 (313)
320 PRK05973 replicative DNA helic 97.0 0.0012 2.6E-08 55.2 4.9 36 3-38 64-99 (237)
321 PRK15453 phosphoribulokinase; 97.0 0.0013 2.9E-08 55.9 5.2 29 2-30 4-32 (290)
322 COG3910 Predicted ATPase [Gene 97.0 0.011 2.5E-07 46.9 9.8 24 3-26 37-60 (233)
323 COG0529 CysC Adenylylsulfate k 97.0 0.0015 3.3E-08 51.1 4.9 35 3-38 23-57 (197)
324 PRK14527 adenylate kinase; Pro 97.0 0.00082 1.8E-08 54.7 3.7 27 2-28 5-31 (191)
325 TIGR01425 SRP54_euk signal rec 97.0 0.0082 1.8E-07 54.7 10.3 35 3-37 100-134 (429)
326 KOG0728 26S proteasome regulat 96.9 0.019 4.1E-07 47.7 11.4 25 3-27 181-205 (404)
327 cd02021 GntK Gluconate kinase 96.9 0.00065 1.4E-08 52.9 2.9 23 5-27 1-23 (150)
328 PLN02674 adenylate kinase 96.9 0.0037 8E-08 52.6 7.5 25 3-27 31-55 (244)
329 TIGR02524 dot_icm_DotB Dot/Icm 96.9 0.0017 3.8E-08 58.0 5.9 96 4-105 135-233 (358)
330 COG1936 Predicted nucleotide k 96.9 0.0007 1.5E-08 52.8 2.9 20 5-24 2-21 (180)
331 COG0378 HypB Ni2+-binding GTPa 96.9 0.0014 3E-08 52.3 4.6 35 4-38 14-48 (202)
332 PRK13538 cytochrome c biogenes 96.9 0.0066 1.4E-07 49.9 9.0 25 3-27 27-51 (204)
333 TIGR02322 phosphon_PhnN phosph 96.9 0.00079 1.7E-08 54.1 3.4 25 4-28 2-26 (179)
334 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0014 3E-08 56.0 5.0 36 3-38 36-71 (259)
335 PLN03187 meiotic recombination 96.9 0.0046 9.9E-08 54.8 8.3 52 4-60 127-184 (344)
336 cd00071 GMPK Guanosine monopho 96.9 0.00067 1.4E-08 52.0 2.7 26 5-30 1-26 (137)
337 COG1875 NYN ribonuclease and A 96.9 0.0059 1.3E-07 53.4 8.5 118 2-122 244-388 (436)
338 cd03226 ABC_cobalt_CbiO_domain 96.9 0.0074 1.6E-07 49.6 9.1 25 3-27 26-50 (205)
339 PRK14530 adenylate kinase; Pro 96.9 0.00099 2.1E-08 55.3 3.8 25 3-27 3-27 (215)
340 TIGR00073 hypB hydrogenase acc 96.9 0.0016 3.4E-08 53.8 5.0 29 1-29 20-48 (207)
341 PRK14737 gmk guanylate kinase; 96.9 0.00089 1.9E-08 54.1 3.4 26 2-27 3-28 (186)
342 PRK10875 recD exonuclease V su 96.9 0.0043 9.4E-08 59.3 8.4 27 3-29 167-193 (615)
343 PF03308 ArgK: ArgK protein; 96.9 0.0015 3.3E-08 54.6 4.7 35 2-36 28-62 (266)
344 cd02025 PanK Pantothenate kina 96.9 0.0013 2.9E-08 54.6 4.4 25 5-29 1-25 (220)
345 cd02020 CMPK Cytidine monophos 96.9 0.00087 1.9E-08 51.8 3.1 23 5-27 1-23 (147)
346 PF12775 AAA_7: P-loop contain 96.9 0.00042 9.1E-09 59.5 1.4 26 3-28 33-58 (272)
347 TIGR00041 DTMP_kinase thymidyl 96.9 0.0033 7.2E-08 51.2 6.7 28 3-30 3-30 (195)
348 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0012 2.7E-08 56.1 4.3 26 5-30 1-26 (249)
349 COG2019 AdkA Archaeal adenylat 96.9 0.0013 2.8E-08 51.0 3.8 27 1-27 2-28 (189)
350 cd03232 ABC_PDR_domain2 The pl 96.9 0.0063 1.4E-07 49.5 8.2 24 3-26 33-56 (192)
351 TIGR00959 ffh signal recogniti 96.9 0.014 2.9E-07 53.5 11.1 26 3-28 99-124 (428)
352 COG2805 PilT Tfp pilus assembl 96.9 0.0059 1.3E-07 52.1 7.9 94 4-105 126-219 (353)
353 PRK14529 adenylate kinase; Pro 96.9 0.0045 9.8E-08 51.3 7.3 23 6-28 3-25 (223)
354 PRK07276 DNA polymerase III su 96.9 0.078 1.7E-06 45.9 15.0 66 84-150 104-173 (290)
355 PRK05818 DNA polymerase III su 96.8 0.24 5.2E-06 42.0 18.9 55 85-139 89-147 (261)
356 KOG3928 Mitochondrial ribosome 96.8 0.019 4.1E-07 51.0 11.3 55 130-187 402-460 (461)
357 KOG3347 Predicted nucleotide k 96.8 0.00081 1.8E-08 51.0 2.5 25 3-27 7-31 (176)
358 TIGR00455 apsK adenylylsulfate 96.8 0.0064 1.4E-07 49.1 8.0 27 3-29 18-44 (184)
359 PRK03846 adenylylsulfate kinas 96.8 0.0021 4.5E-08 52.6 5.2 35 3-37 24-58 (198)
360 COG3854 SpoIIIAA ncharacterize 96.8 0.0066 1.4E-07 49.8 7.8 25 6-30 140-164 (308)
361 PF06745 KaiC: KaiC; InterPro 96.8 0.0025 5.4E-08 53.4 5.7 36 3-38 19-55 (226)
362 TIGR02655 circ_KaiC circadian 96.8 0.0019 4.1E-08 60.4 5.5 35 4-38 264-298 (484)
363 PRK13808 adenylate kinase; Pro 96.8 0.0042 9.2E-08 54.5 7.2 22 6-27 3-24 (333)
364 KOG0651 26S proteasome regulat 96.8 0.011 2.5E-07 50.5 9.4 27 3-29 166-192 (388)
365 PRK06761 hypothetical protein; 96.8 0.0018 3.8E-08 55.6 4.7 28 3-30 3-30 (282)
366 cd01672 TMPK Thymidine monopho 96.8 0.0033 7.2E-08 51.3 6.3 27 4-30 1-27 (200)
367 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.0038 8.2E-08 52.7 6.8 36 3-38 21-56 (237)
368 PF14532 Sigma54_activ_2: Sigm 96.8 0.0023 5.1E-08 49.0 5.0 24 4-27 22-45 (138)
369 PRK13543 cytochrome c biogenes 96.8 0.0096 2.1E-07 49.4 9.1 24 4-27 38-61 (214)
370 PRK13947 shikimate kinase; Pro 96.8 0.0011 2.4E-08 52.8 3.3 24 5-28 3-26 (171)
371 smart00072 GuKc Guanylate kina 96.8 0.0011 2.4E-08 53.6 3.3 30 3-32 2-31 (184)
372 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.0021 4.6E-08 53.4 5.1 23 3-25 31-53 (222)
373 PRK00698 tmk thymidylate kinas 96.8 0.0039 8.4E-08 51.2 6.6 29 2-30 2-30 (205)
374 cd02023 UMPK Uridine monophosp 96.8 0.001 2.2E-08 54.5 3.1 23 5-27 1-23 (198)
375 TIGR02768 TraA_Ti Ti-type conj 96.8 0.0097 2.1E-07 58.6 10.3 34 3-36 368-401 (744)
376 PF03029 ATP_bind_1: Conserved 96.8 0.0015 3.4E-08 54.9 4.2 30 8-37 1-30 (238)
377 cd02024 NRK1 Nicotinamide ribo 96.8 0.00099 2.1E-08 53.7 2.9 23 5-27 1-23 (187)
378 KOG0736 Peroxisome assembly fa 96.8 0.021 4.5E-07 54.8 11.8 151 2-178 430-599 (953)
379 PF06414 Zeta_toxin: Zeta toxi 96.8 0.0021 4.5E-08 52.7 4.8 97 2-107 14-116 (199)
380 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0015 3.3E-08 49.3 3.6 26 3-28 22-47 (133)
381 KOG0652 26S proteasome regulat 96.8 0.036 7.8E-07 46.4 11.8 25 4-28 206-230 (424)
382 PF00158 Sigma54_activat: Sigm 96.8 0.0083 1.8E-07 47.6 8.0 22 5-26 24-45 (168)
383 COG0194 Gmk Guanylate kinase [ 96.8 0.0015 3.3E-08 51.7 3.7 25 3-27 4-28 (191)
384 COG0468 RecA RecA/RadA recombi 96.8 0.0089 1.9E-07 51.2 8.6 36 3-38 60-95 (279)
385 PRK13768 GTPase; Provisional 96.8 0.0022 4.8E-08 54.6 5.0 34 4-37 3-36 (253)
386 TIGR01447 recD exodeoxyribonuc 96.8 0.0085 1.8E-07 57.2 9.3 27 3-29 160-186 (586)
387 KOG2035 Replication factor C, 96.8 0.097 2.1E-06 44.3 14.2 185 2-203 33-259 (351)
388 PRK09544 znuC high-affinity zi 96.8 0.011 2.4E-07 50.3 9.2 25 3-27 30-54 (251)
389 PF13086 AAA_11: AAA domain; P 96.8 0.0025 5.3E-08 53.4 5.2 23 5-27 19-41 (236)
390 KOG0726 26S proteasome regulat 96.8 0.0087 1.9E-07 50.8 8.2 29 3-31 219-247 (440)
391 PF02456 Adeno_IVa2: Adenoviru 96.8 0.019 4.1E-07 49.1 10.2 102 75-188 187-299 (369)
392 PRK14493 putative bifunctional 96.8 0.0022 4.7E-08 55.1 4.8 34 4-38 2-35 (274)
393 COG1120 FepC ABC-type cobalami 96.7 0.0083 1.8E-07 50.6 8.1 24 3-26 28-51 (258)
394 PRK00300 gmk guanylate kinase; 96.7 0.0014 3E-08 53.9 3.5 26 2-27 4-29 (205)
395 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0016 3.4E-08 57.6 4.0 27 3-29 78-104 (361)
396 TIGR01313 therm_gnt_kin carboh 96.7 0.001 2.2E-08 52.6 2.6 22 6-27 1-22 (163)
397 cd03369 ABCC_NFT1 Domain 2 of 96.7 0.034 7.4E-07 45.8 11.8 24 4-27 35-58 (207)
398 cd03217 ABC_FeS_Assembly ABC-t 96.7 0.0056 1.2E-07 50.2 7.0 24 3-26 26-49 (200)
399 PRK08533 flagellar accessory p 96.7 0.0049 1.1E-07 51.7 6.8 36 3-38 24-59 (230)
400 PLN02459 probable adenylate ki 96.7 0.0068 1.5E-07 51.3 7.5 23 5-27 31-53 (261)
401 PRK00409 recombination and DNA 96.7 0.0023 4.9E-08 63.2 5.3 111 83-202 406-525 (782)
402 PF08477 Miro: Miro-like prote 96.7 0.0015 3.2E-08 48.5 3.2 21 6-26 2-22 (119)
403 PRK14526 adenylate kinase; Pro 96.7 0.0076 1.6E-07 49.7 7.6 22 6-27 3-24 (211)
404 COG5635 Predicted NTPase (NACH 96.7 0.0025 5.5E-08 63.6 5.6 137 5-149 224-375 (824)
405 cd00464 SK Shikimate kinase (S 96.7 0.0016 3.5E-08 50.8 3.4 22 6-27 2-23 (154)
406 PRK13949 shikimate kinase; Pro 96.7 0.0017 3.6E-08 51.7 3.5 25 4-28 2-26 (169)
407 PRK10416 signal recognition pa 96.7 0.0031 6.6E-08 55.5 5.3 36 2-37 113-148 (318)
408 cd03243 ABC_MutS_homologs The 96.7 0.017 3.7E-07 47.4 9.5 23 4-26 30-52 (202)
409 cd00984 DnaB_C DnaB helicase C 96.7 0.0055 1.2E-07 51.8 6.7 35 4-38 14-49 (242)
410 PRK13948 shikimate kinase; Pro 96.7 0.0019 4.1E-08 51.9 3.7 26 3-28 10-35 (182)
411 PRK13973 thymidylate kinase; P 96.7 0.0062 1.3E-07 50.5 6.8 37 2-38 2-38 (213)
412 KOG0737 AAA+-type ATPase [Post 96.7 0.023 5E-07 49.9 10.3 30 3-32 127-156 (386)
413 TIGR03263 guanyl_kin guanylate 96.7 0.0014 3.1E-08 52.7 2.9 24 4-27 2-25 (180)
414 PRK14738 gmk guanylate kinase; 96.7 0.0018 3.8E-08 53.4 3.5 25 2-26 12-36 (206)
415 TIGR03411 urea_trans_UrtD urea 96.7 0.023 5.1E-07 48.0 10.5 23 4-26 29-51 (242)
416 KOG1051 Chaperone HSP104 and r 96.7 0.019 4.1E-07 56.6 10.8 77 5-95 593-671 (898)
417 cd00046 DEXDc DEAD-like helica 96.6 0.012 2.6E-07 44.4 8.0 34 5-38 2-37 (144)
418 TIGR00176 mobB molybdopterin-g 96.6 0.0027 5.9E-08 49.7 4.3 26 5-30 1-26 (155)
419 cd03233 ABC_PDR_domain1 The pl 96.6 0.012 2.5E-07 48.4 8.3 25 4-28 34-58 (202)
420 COG0465 HflB ATP-dependent Zn 96.6 0.016 3.5E-07 54.6 10.0 151 3-179 183-357 (596)
421 cd03230 ABC_DR_subfamily_A Thi 96.6 0.0073 1.6E-07 48.2 6.9 24 4-27 27-50 (173)
422 PTZ00035 Rad51 protein; Provis 96.6 0.0096 2.1E-07 52.9 8.2 26 3-28 118-143 (337)
423 COG1763 MobB Molybdopterin-gua 96.6 0.0029 6.3E-08 49.4 4.4 35 3-37 2-36 (161)
424 PRK06731 flhF flagellar biosyn 96.6 0.014 3E-07 50.0 8.9 36 3-38 75-110 (270)
425 PRK14532 adenylate kinase; Pro 96.6 0.0016 3.5E-08 52.8 3.1 22 6-27 3-24 (188)
426 TIGR02788 VirB11 P-type DNA tr 96.6 0.0044 9.5E-08 54.5 6.0 108 3-122 144-253 (308)
427 PRK10463 hydrogenase nickel in 96.6 0.0031 6.7E-08 54.2 4.9 36 1-36 102-137 (290)
428 cd03231 ABC_CcmA_heme_exporter 96.6 0.012 2.5E-07 48.3 8.2 24 3-26 26-49 (201)
429 PF00006 ATP-synt_ab: ATP synt 96.6 0.0024 5.2E-08 52.7 4.0 26 4-29 16-41 (215)
430 cd03114 ArgK-like The function 96.6 0.0031 6.8E-08 48.9 4.4 33 5-37 1-33 (148)
431 PRK12338 hypothetical protein; 96.6 0.0021 4.5E-08 56.0 3.7 26 2-27 3-28 (319)
432 COG4619 ABC-type uncharacteriz 96.6 0.0023 4.9E-08 49.8 3.5 28 5-32 31-58 (223)
433 KOG0738 AAA+-type ATPase [Post 96.6 0.043 9.3E-07 48.6 11.6 26 4-29 246-271 (491)
434 cd03285 ABC_MSH2_euk MutS2 hom 96.6 0.0029 6.4E-08 52.7 4.5 24 2-25 29-52 (222)
435 PRK13975 thymidylate kinase; P 96.6 0.0021 4.6E-08 52.4 3.7 26 4-29 3-28 (196)
436 PRK05057 aroK shikimate kinase 96.6 0.0022 4.8E-08 51.2 3.6 26 2-27 3-28 (172)
437 cd01428 ADK Adenylate kinase ( 96.6 0.0018 3.9E-08 52.7 3.2 22 6-27 2-23 (194)
438 cd03213 ABCG_EPDR ABCG transpo 96.6 0.014 3.1E-07 47.5 8.4 24 4-27 36-59 (194)
439 PF02492 cobW: CobW/HypB/UreG, 96.6 0.004 8.7E-08 50.0 5.1 35 4-38 1-35 (178)
440 cd03300 ABC_PotA_N PotA is an 96.6 0.014 3.1E-07 49.0 8.7 25 3-27 26-50 (232)
441 cd03116 MobB Molybdenum is an 96.6 0.004 8.6E-08 48.9 4.9 27 4-30 2-28 (159)
442 COG1124 DppF ABC-type dipeptid 96.6 0.0022 4.8E-08 52.9 3.5 23 4-26 34-56 (252)
443 COG1428 Deoxynucleoside kinase 96.6 0.0021 4.5E-08 51.9 3.3 26 3-28 4-29 (216)
444 TIGR01448 recD_rel helicase, p 96.6 0.026 5.6E-07 55.5 11.4 28 3-30 338-365 (720)
445 PRK13946 shikimate kinase; Pro 96.6 0.0023 5E-08 51.7 3.5 25 3-27 10-34 (184)
446 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.0038 8.1E-08 52.4 5.0 36 3-38 20-55 (229)
447 COG4618 ArpD ABC-type protease 96.6 0.0098 2.1E-07 54.3 7.7 22 4-25 363-384 (580)
448 PRK12727 flagellar biosynthesi 96.6 0.0094 2E-07 55.4 7.8 28 3-30 350-377 (559)
449 PRK09435 membrane ATPase/prote 96.6 0.0041 9E-08 54.8 5.3 36 2-37 55-90 (332)
450 COG2401 ABC-type ATPase fused 96.6 0.008 1.7E-07 53.6 7.0 24 4-27 410-433 (593)
451 PHA02530 pseT polynucleotide k 96.6 0.0021 4.5E-08 56.3 3.5 24 4-27 3-26 (300)
452 PF13521 AAA_28: AAA domain; P 96.5 0.0021 4.6E-08 50.8 3.2 21 6-26 2-22 (163)
453 PF02367 UPF0079: Uncharacteri 96.5 0.0033 7.1E-08 46.8 3.9 26 2-27 14-39 (123)
454 cd00820 PEPCK_HprK Phosphoenol 96.5 0.0027 5.8E-08 46.0 3.3 22 3-24 15-36 (107)
455 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.0039 8.4E-08 44.1 4.3 26 5-30 1-26 (99)
456 cd02117 NifH_like This family 96.5 0.0039 8.4E-08 51.6 4.8 34 4-37 1-34 (212)
457 TIGR02236 recomb_radA DNA repa 96.5 0.0064 1.4E-07 53.6 6.4 36 3-38 95-136 (310)
458 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0047 1E-07 48.5 5.0 116 4-127 26-145 (157)
459 KOG1532 GTPase XAB1, interacts 96.5 0.0034 7.3E-08 52.6 4.3 31 3-33 19-49 (366)
460 TIGR02533 type_II_gspE general 96.5 0.0074 1.6E-07 56.3 7.0 90 4-105 243-332 (486)
461 COG0542 clpA ATP-binding subun 96.5 0.022 4.8E-07 55.3 10.3 123 7-151 195-345 (786)
462 PRK11608 pspF phage shock prot 96.5 0.15 3.3E-06 45.2 15.0 22 5-26 31-52 (326)
463 COG1703 ArgK Putative periplas 96.5 0.004 8.7E-08 53.0 4.7 36 3-38 51-86 (323)
464 TIGR01287 nifH nitrogenase iro 96.5 0.0033 7.2E-08 54.3 4.4 35 4-38 1-35 (275)
465 cd03289 ABCC_CFTR2 The CFTR su 96.5 0.042 9.1E-07 47.4 11.1 26 3-28 30-55 (275)
466 TIGR02173 cyt_kin_arch cytidyl 96.5 0.0025 5.3E-08 50.7 3.4 23 5-27 2-24 (171)
467 PRK10078 ribose 1,5-bisphospho 96.5 0.0021 4.6E-08 52.0 3.0 24 4-27 3-26 (186)
468 PRK09270 nucleoside triphospha 96.5 0.0042 9.2E-08 52.1 4.9 31 2-32 32-62 (229)
469 KOG2170 ATPase of the AAA+ sup 96.5 0.026 5.6E-07 48.2 9.3 27 2-28 109-135 (344)
470 TIGR02974 phageshock_pspF psp 96.5 0.023 5E-07 50.4 9.7 23 5-27 24-46 (329)
471 PRK05439 pantothenate kinase; 96.5 0.0031 6.8E-08 54.9 4.0 28 2-29 85-112 (311)
472 PRK13764 ATPase; Provisional 96.5 0.0075 1.6E-07 57.3 6.8 86 3-102 257-342 (602)
473 TIGR00554 panK_bact pantothena 96.5 0.0033 7.1E-08 54.4 4.1 27 2-28 61-87 (290)
474 PRK13826 Dtr system oriT relax 96.5 0.025 5.4E-07 57.4 10.7 102 2-121 396-505 (1102)
475 PF00154 RecA: recA bacterial 96.5 0.01 2.2E-07 52.0 7.0 36 3-38 53-88 (322)
476 PRK15429 formate hydrogenlyase 96.5 0.14 3.1E-06 50.3 15.8 24 4-27 400-423 (686)
477 PRK04182 cytidylate kinase; Pr 96.4 0.0027 5.9E-08 50.9 3.3 23 5-27 2-24 (180)
478 TIGR03522 GldA_ABC_ATP gliding 96.4 0.018 3.9E-07 50.5 8.7 23 4-26 29-51 (301)
479 PRK08356 hypothetical protein; 96.4 0.0032 6.9E-08 51.4 3.7 23 2-24 4-26 (195)
480 PRK09825 idnK D-gluconate kina 96.4 0.0033 7.2E-08 50.3 3.7 27 2-28 2-28 (176)
481 PRK04301 radA DNA repair and r 96.4 0.0072 1.6E-07 53.4 6.1 36 3-38 102-143 (317)
482 PRK04328 hypothetical protein; 96.4 0.0051 1.1E-07 52.3 4.9 36 3-38 23-58 (249)
483 TIGR01817 nifA Nif-specific re 96.4 0.033 7.2E-07 53.0 11.0 23 5-27 221-243 (534)
484 PRK11174 cysteine/glutathione 96.4 0.021 4.6E-07 55.0 9.8 25 3-27 376-400 (588)
485 PRK12678 transcription termina 96.4 0.011 2.4E-07 55.3 7.3 28 4-31 417-444 (672)
486 PRK11176 lipid transporter ATP 96.4 0.016 3.4E-07 55.9 8.8 25 3-27 369-393 (582)
487 cd03282 ABC_MSH4_euk MutS4 hom 96.4 0.0049 1.1E-07 50.6 4.6 24 3-26 29-52 (204)
488 COG1131 CcmA ABC-type multidru 96.4 0.031 6.7E-07 48.7 9.8 26 3-28 31-56 (293)
489 cd02040 NifH NifH gene encodes 96.4 0.0058 1.3E-07 52.6 5.3 35 4-38 2-36 (270)
490 PRK02496 adk adenylate kinase; 96.4 0.003 6.6E-08 51.0 3.3 23 5-27 3-25 (184)
491 KOG1514 Origin recognition com 96.4 0.13 2.7E-06 49.1 14.0 145 4-155 423-592 (767)
492 PRK13657 cyclic beta-1,2-gluca 96.4 0.017 3.6E-07 55.8 8.8 25 3-27 361-385 (588)
493 cd02029 PRK_like Phosphoribulo 96.4 0.0049 1.1E-07 52.2 4.5 33 5-37 1-33 (277)
494 COG3640 CooC CO dehydrogenase 96.4 0.0061 1.3E-07 50.1 4.8 34 5-38 2-35 (255)
495 PF06068 TIP49: TIP49 C-termin 96.4 0.0039 8.4E-08 54.9 4.0 35 2-36 49-83 (398)
496 PF05970 PIF1: PIF1-like helic 96.4 0.006 1.3E-07 54.9 5.3 35 2-36 21-55 (364)
497 PRK13889 conjugal transfer rel 96.4 0.029 6.2E-07 56.6 10.5 28 3-30 362-389 (988)
498 COG1224 TIP49 DNA helicase TIP 96.4 0.009 1.9E-07 52.1 6.0 35 2-36 64-98 (450)
499 COG0125 Tmk Thymidylate kinase 96.4 0.012 2.5E-07 48.3 6.5 52 2-57 2-53 (208)
500 TIGR02868 CydC thiol reductant 96.4 0.016 3.4E-07 55.1 8.4 25 3-27 361-385 (529)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.5e-39 Score=326.53 Aligned_cols=316 Identities=35% Similarity=0.625 Sum_probs=262.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEecc--c---hhhhc------CChHHHHHHHHHHHhcCCCCCCCC
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNV--R---EAEET------GKLADLRKELLSTLLNDGNMNKFP 70 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~--~---~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~ 70 (329)
++++|+|+||+|+||||||+.+++++..+|+..+|+... . ..... .....+...++..+...... ..
T Consensus 206 ~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~-~~- 283 (1153)
T PLN03210 206 EVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI-KI- 283 (1153)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc-cc-
Confidence 578999999999999999999999999999988887421 0 00000 01123344444444333211 11
Q ss_pred CcchHHHHhhhcCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHhcCCCeEEEecCCChhhhHHHHhh
Q 020206 71 NIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLNQ 150 (329)
Q Consensus 71 ~~~~~~l~~~~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~~l~~~e~~~ll~~ 150 (329)
.....+++.+.++++||||||||+...++.+.....+.++|++||||||+..++........++++.++.++|+++|..
T Consensus 284 -~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~ 362 (1153)
T PLN03210 284 -YHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCR 362 (1153)
T ss_pred -CCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHH
Confidence 1235677788899999999999999988888776555678999999999998887666678999999999999999999
Q ss_pred hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhhHHHHHHhhhcCCCh-hhHhHH
Q 020206 151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDD-KEKNIF 229 (329)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~-~~~~~l 229 (329)
.+++...+.....+++.+++++|+|+||||+.+|+.|+..+..+|+..++++.......+..+++.+|+.|++ ..|.+|
T Consensus 363 ~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~F 442 (1153)
T PLN03210 363 SAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIF 442 (1153)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhh
Confidence 9987766666678889999999999999999999999999999999999999887788899999999999986 589999
Q ss_pred HhhhcccCccChhHHHHHHHhCCcchhhhHHHHhhccceeeecCCceeccHHHHHHHHHHHHhcCCCCCCCCccccCcch
Q 020206 230 LDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSRLWHHKE 309 (329)
Q Consensus 230 ~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~H~lir~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (329)
+++|+|+.+.+.+.+..++...+......++.|++++||+.. .++|.||+++|++++++++++. .++..+.++|.+.+
T Consensus 443 l~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~d 520 (1153)
T PLN03210 443 RHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKD 520 (1153)
T ss_pred heehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHH
Confidence 999999988888888888877777777889999999999876 5679999999999999998886 67889999999999
Q ss_pred HHHHHhhcccccc
Q 020206 310 IYEVLTENMVSNY 322 (329)
Q Consensus 310 ~~~~l~~~~~~~~ 322 (329)
++.+++++.|+..
T Consensus 521 i~~vl~~~~g~~~ 533 (1153)
T PLN03210 521 ICDVLEDNTGTKK 533 (1153)
T ss_pred HHHHHHhCcccce
Confidence 9999999887544
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-40 Score=318.23 Aligned_cols=286 Identities=26% Similarity=0.346 Sum_probs=247.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH---HhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCC--CcchHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSK---ISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFP--NIGLNF 76 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~ 76 (329)
+..+++|+||||+||||||+++.++ +..+|+.++|++ ++......+++.+|+..++......... +.....
T Consensus 178 ~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~ 253 (889)
T KOG4658|consen 178 DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASK 253 (889)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHHhccCCcccchhhHHHHHHH
Confidence 3468999999999999999999984 568899999999 7788899999999999887654432222 347778
Q ss_pred HHhhhcCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCC
Q 020206 77 QSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGR 155 (329)
Q Consensus 77 l~~~~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~ 155 (329)
+.+.+.++|++||+||||+..+|+.+...++...+|++|++|||++.+... +.....++++.|+++||+.+|.+.++..
T Consensus 254 i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~ 333 (889)
T KOG4658|consen 254 LLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPN 333 (889)
T ss_pred HHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccc
Confidence 888899999999999999999999999888877788999999999998887 6666789999999999999999998665
Q ss_pred -CCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCC-CHHHHHHHHHhhccC-------ChhhHHHHHHhhhcCCChhhH
Q 020206 156 -DHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK-RKEVWENAISKLEMV-------PQMEIQEVLKISYDGLDDKEK 226 (329)
Q Consensus 156 -~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-~~~~~~~~~~~l~~~-------~~~~~~~~l~~~~~~L~~~~~ 226 (329)
....+..++.+++++++|+|+|||+..+|+.|+.. ...+|+.+.+.+.+. ..+.+..++..||+.|+++.|
T Consensus 334 ~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK 413 (889)
T KOG4658|consen 334 TLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELK 413 (889)
T ss_pred cccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHH
Confidence 34334579999999999999999999999999984 566899999987554 246788999999999999999
Q ss_pred hHHHhhhcccCc--cChhHHHHHHHhCCcc------------hhhhHHHHhhccceeeecC----CceeccHHHHHHHHH
Q 020206 227 NIFLDIACFLVG--EDRDIVTKYLNACEFF------------ATSGIEVLVDKSLITISEY----NKIRMHDLMRNMGRE 288 (329)
Q Consensus 227 ~~l~~ls~~~~~--~~~~~l~~~~~~~~~~------------~~~~l~~L~~~~Ll~~~~~----~~~~~H~lir~~~~~ 288 (329)
.||+++|+||.+ +..+.+..+|.++|+. +.+++.+|++++|+..... ..+.|||++|++|..
T Consensus 414 ~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ 493 (889)
T KOG4658|consen 414 SCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALW 493 (889)
T ss_pred HHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHH
Confidence 999999999988 7899999999998843 4568999999999986542 469999999999999
Q ss_pred HHH
Q 020206 289 IVR 291 (329)
Q Consensus 289 ~~~ 291 (329)
++.
T Consensus 494 ias 496 (889)
T KOG4658|consen 494 IAS 496 (889)
T ss_pred Hhc
Confidence 998
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.4e-37 Score=266.85 Aligned_cols=249 Identities=28% Similarity=0.425 Sum_probs=190.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH--HhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCC---CCCCcchHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSK--ISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMN---KFPNIGLNF 76 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~ 76 (329)
+.++|+|+|+||+|||+||.+++++ ...+|+.++|+. .........+...++..+....... .........
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQ 93 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccc----ccccccccccccccccccccccccccccccccccccc
Confidence 5789999999999999999999988 788999999998 5555666889999999987764321 122226778
Q ss_pred HHhhhcCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHhcCC-CeEEEecCCChhhhHHHHhhhhcCC
Q 020206 77 QSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGV-NKIYQIKELVHVDALKLLNQCAFGR 155 (329)
Q Consensus 77 l~~~~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~-~~~~~l~~l~~~e~~~ll~~~~~~~ 155 (329)
+.+.+.++++||||||||+...++.+...+.....+++||+|||+..+...... ...+++++|+++|+.+||.+.++..
T Consensus 94 l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 94 LRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRK 173 (287)
T ss_dssp HHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSH
T ss_pred chhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 888899999999999999999887777666555668999999999876554433 5789999999999999999988544
Q ss_pred C-CCCCchHHHHHHHHHHhcCCchHHHHHHhhhcC-CCHHHHHHHHHhhccC------ChhhHHHHHHhhhcCCChhhHh
Q 020206 156 D-HPDASYIELTHEAIKYAQGVPIALKILGRFLFR-KRKEVWENAISKLEMV------PQMEIQEVLKISYDGLDDKEKN 227 (329)
Q Consensus 156 ~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~~~~~~~~~~~~l~~~------~~~~~~~~l~~~~~~L~~~~~~ 227 (329)
. ......++.+++|++.|+|+|+||..+|++++. ....+|....+.+... ....+..++..+|+.|+++.|+
T Consensus 174 ~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~ 253 (287)
T PF00931_consen 174 ESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRR 253 (287)
T ss_dssp S----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHH
Confidence 3 222334566899999999999999999999954 2456788887765433 2477999999999999999999
Q ss_pred HHHhhhcccCc--cChhHHHHHHHhCCcc
Q 020206 228 IFLDIACFLVG--EDRDIVTKYLNACEFF 254 (329)
Q Consensus 228 ~l~~ls~~~~~--~~~~~l~~~~~~~~~~ 254 (329)
||.++|+||.+ ++.+.+..+|.+++..
T Consensus 254 ~f~~L~~f~~~~~i~~~~li~lW~~e~~i 282 (287)
T PF00931_consen 254 CFLYLSIFPEGVPIPRERLIRLWVAEGFI 282 (287)
T ss_dssp HHHHGGGSGTTS-EEHHHHHHHHTT-HHT
T ss_pred HHhhCcCCCCCceECHHHHHHHHHHCCCC
Confidence 99999999987 6799999999876554
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.88 E-value=7.4e-21 Score=190.60 Aligned_cols=276 Identities=13% Similarity=0.133 Sum_probs=178.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhh-hcCChHHHHHHHHHHHhcCCCC--CCC---------
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAE-ETGKLADLRKELLSTLLNDGNM--NKF--------- 69 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~--~~~--------- 69 (329)
..|++.|+||+|.||||++.++++.. +.+.|++ .. ....+..++..++..+...... +..
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~----l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 102 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS----LDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQY 102 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe----cCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCc
Confidence 46899999999999999999998642 2688987 43 2345566666666666422111 000
Q ss_pred CCc--chHHHHhhh-c-CceEEEEEecCCCh--hhHHHHhccc-CCCCCCcEEEEEeCchhHHHh--cC-CCeEEEec--
Q 020206 70 PNI--GLNFQSKRL-T-RKKVLIVFDDVNHP--RQIEFLIGNL-DWFASGSRILITARDKQALIN--CG-VNKIYQIK-- 137 (329)
Q Consensus 70 ~~~--~~~~l~~~~-~-~~~~LlvlDdv~~~--~~~~~l~~~l-~~~~~~~~ilitsr~~~~~~~--~~-~~~~~~l~-- 137 (329)
... ....+...+ . +++++|||||++.. ..+..++..+ ...+++..+|+|||..+.... .. ......+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~ 182 (903)
T PRK04841 103 ASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQ 182 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHH
Confidence 110 122222222 2 57999999999532 2222222222 223567788899998532211 11 12234455
Q ss_pred --CCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhhHHHHH-
Q 020206 138 --ELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVL- 214 (329)
Q Consensus 138 --~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~l- 214 (329)
+|+.+|+.+++....... . .++.+..|++.|+|||+++.+++..+...+. ........+.......+...+
T Consensus 183 ~l~f~~~e~~~ll~~~~~~~-~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 256 (903)
T PRK04841 183 QLAFDHQEAQQFFDQRLSSP-I----EAAESSRLCDDVEGWATALQLIALSARQNNS-SLHDSARRLAGINASHLSDYLV 256 (903)
T ss_pred hCCCCHHHHHHHHHhccCCC-C----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCC-chhhhhHhhcCCCchhHHHHHH
Confidence 899999999998765222 1 2344889999999999999999887755321 111122222222234455544
Q ss_pred HhhhcCCChhhHhHHHhhhcccCccChhHHHHHHHhCCcchhhhHHHHhhccceee-ec--CCceeccHHHHHHHHHHHH
Q 020206 215 KISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITI-SE--YNKIRMHDLMRNMGREIVR 291 (329)
Q Consensus 215 ~~~~~~L~~~~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~-~~--~~~~~~H~lir~~~~~~~~ 291 (329)
...++.||++.++++..+|+++ .++.+.+..+++ ..+....|+.|.+.+|+.. .+ ..+|++|+++|++++..+.
T Consensus 257 ~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 257 EEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred HHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 4458999999999999999986 788777766664 3456788999999999653 32 2379999999999999986
Q ss_pred hcC
Q 020206 292 QES 294 (329)
Q Consensus 292 ~~~ 294 (329)
...
T Consensus 334 ~~~ 336 (903)
T PRK04841 334 WEL 336 (903)
T ss_pred hcC
Confidence 543
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.86 E-value=2.3e-20 Score=173.61 Aligned_cols=275 Identities=16% Similarity=0.166 Sum_probs=188.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhh-cCChHHHHHHHHHHHhcCCCCCCCCCc--------
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE-TGKLADLRKELLSTLLNDGNMNKFPNI-------- 72 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~-------- 72 (329)
+.|++.|..|+|.|||||+.++++ ....-..+.|++ .++ ...+..++..++..+....+.......
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wls----lde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~ 110 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLS----LDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQY 110 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEee----cCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhccc
Confidence 579999999999999999999998 555667899998 443 567788888888777633221011000
Q ss_pred -----chHHHHhhhc--CceEEEEEecCC---Ch---hhHHHHhcccCCCCCCcEEEEEeCchhHHHhcC---CCeEEEe
Q 020206 73 -----GLNFQSKRLT--RKKVLIVFDDVN---HP---RQIEFLIGNLDWFASGSRILITARDKQALINCG---VNKIYQI 136 (329)
Q Consensus 73 -----~~~~l~~~~~--~~~~LlvlDdv~---~~---~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~---~~~~~~l 136 (329)
++..+...+. .+++.+||||.+ ++ +.++.++.. .+++..+++|||+.+.....+ ....+++
T Consensus 111 ~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~lvv~SR~rP~l~la~lRlr~~llEi 187 (894)
T COG2909 111 VSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENLTLVVTSRSRPQLGLARLRLRDELLEI 187 (894)
T ss_pred ccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCeEEEEEeccCCCCcccceeehhhHHhc
Confidence 2233333222 368999999984 32 234444444 357889999999985543321 1122233
Q ss_pred c----CCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhhHHH
Q 020206 137 K----ELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQE 212 (329)
Q Consensus 137 ~----~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (329)
. .|+.+|+.++|.... +..- ....++.|.+.++|++-|+.+.+-.++.+... ......+......-...
T Consensus 188 ~~~~Lrf~~eE~~~fl~~~~-~l~L----d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~--~q~~~~LsG~~~~l~dY 260 (894)
T COG2909 188 GSEELRFDTEEAAAFLNDRG-SLPL----DAADLKALYDRTEGWAAALQLIALALRNNTSA--EQSLRGLSGAASHLSDY 260 (894)
T ss_pred ChHhhcCChHHHHHHHHHcC-CCCC----ChHHHHHHHhhcccHHHHHHHHHHHccCCCcH--HHHhhhccchHHHHHHH
Confidence 3 489999999998775 2211 12338999999999999999999888843311 12233333332222344
Q ss_pred HHHhhhcCCChhhHhHHHhhhcccCccChhHHHHHHHhCCcchhhhHHHHhhcccee---eecCCceeccHHHHHHHHHH
Q 020206 213 VLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLIT---ISEYNKIRMHDLMRNMGREI 289 (329)
Q Consensus 213 ~l~~~~~~L~~~~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~---~~~~~~~~~H~lir~~~~~~ 289 (329)
+.+..+++||++.|.++..+|++. .++.+...++. ...++...|++|.+++|+- .+++++|++|+++.+|.+.+
T Consensus 261 L~eeVld~Lp~~l~~FLl~~svl~-~f~~eL~~~Lt--g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 261 LVEEVLDRLPPELRDFLLQTSVLS-RFNDELCNALT--GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhHH-HhhHHHHHHHh--cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhh
Confidence 677889999999999999999983 44555544454 3445667899999999854 34467899999999999999
Q ss_pred HHhcC
Q 020206 290 VRQES 294 (329)
Q Consensus 290 ~~~~~ 294 (329)
...+.
T Consensus 338 ~~~~~ 342 (894)
T COG2909 338 LQREL 342 (894)
T ss_pred hcccc
Confidence 88754
No 6
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.56 E-value=1.6e-13 Score=134.25 Aligned_cols=226 Identities=15% Similarity=0.217 Sum_probs=141.2
Q ss_pred CceEEEEEecC-CChhh----HHHHhcccC--CC-CCCcEEEEEeCch--hHHHhcCCCeEEEecCCChhhhHHHHhhhh
Q 020206 83 RKKVLIVFDDV-NHPRQ----IEFLIGNLD--WF-ASGSRILITARDK--QALINCGVNKIYQIKELVHVDALKLLNQCA 152 (329)
Q Consensus 83 ~~~~LlvlDdv-~~~~~----~~~l~~~l~--~~-~~~~~ilitsr~~--~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~ 152 (329)
.++.++|+||+ |-+.. ++.++.... .. ....-.+.+.+.. ...........+.|.||+..+...++....
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 46999999999 54443 343433322 00 0011122233332 122222355789999999999999999887
Q ss_pred cCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCC-------CHHHHHHHHHhhcc-CChhhHHHHHHhhhcCCChh
Q 020206 153 FGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK-------RKEVWENAISKLEM-VPQMEIQEVLKISYDGLDDK 224 (329)
Q Consensus 153 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-------~~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~L~~~ 224 (329)
...... .....+.+++++.|||+++..+.+.+..+ ....|..-...+.. ...+.+...+...++.||+.
T Consensus 233 ~~~~~~---~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 233 GCTKLL---PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred CCcccc---cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHH
Confidence 332222 23458889999999999999999888663 23333333333221 11233556789999999999
Q ss_pred hHhHHHhhhcccCccChhHHHHHHHhCCcchhhhHHHHhhccceeeec--------CC-c-e-eccHHHHHHHHHHHHhc
Q 020206 225 EKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISE--------YN-K-I-RMHDLMRNMGREIVRQE 293 (329)
Q Consensus 225 ~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~~~--------~~-~-~-~~H~lir~~~~~~~~~~ 293 (329)
.|+++...||++..|+.+.+..++..........+......+++.+.+ .. . | ..|+++++.+...
T Consensus 310 t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~---- 385 (849)
T COG3899 310 TREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNL---- 385 (849)
T ss_pred HHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhcc----
Confidence 999999999999999999999998643333333344444445554321 11 1 3 4588888887644
Q ss_pred CCCCCCCCccccCcchHHHHHhhccc
Q 020206 294 SINDPSKRSRLWHHKEIYEVLTENMV 319 (329)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (329)
.....|...|-.+.+.|..+-.
T Consensus 386 ----i~~~~rq~~H~~i~~lL~~~~~ 407 (849)
T COG3899 386 ----IPESQRQYLHLRIGQLLEQNIP 407 (849)
T ss_pred ----CchhhHHHHHHHHHHHHHHhCC
Confidence 2333444567777777665544
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.49 E-value=1.2e-11 Score=112.67 Aligned_cols=258 Identities=14% Similarity=0.056 Sum_probs=146.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCC--CcchHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFP--NIGLNFQS 78 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~l~ 78 (329)
.+.+.|+|++|+|||++++.+++.+....+. .+++. +........++..++.++.....+.... ......+.
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 130 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIA 130 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence 3568999999999999999999987665422 33333 2233456677888888876532211111 11334444
Q ss_pred hhhc--CceEEEEEecCCCh------hhHHHHhcccCCCCC-CcEEEEEeCchhHHHhc-------CCCeEEEecCCChh
Q 020206 79 KRLT--RKKVLIVFDDVNHP------RQIEFLIGNLDWFAS-GSRILITARDKQALINC-------GVNKIYQIKELVHV 142 (329)
Q Consensus 79 ~~~~--~~~~LlvlDdv~~~------~~~~~l~~~l~~~~~-~~~ilitsr~~~~~~~~-------~~~~~~~l~~l~~~ 142 (329)
+.+. +++++||||+++.. +.+..++........ +..+|.++......... -....+.+++++.+
T Consensus 131 ~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~ 210 (394)
T PRK00411 131 EYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTAD 210 (394)
T ss_pred HHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHH
Confidence 4443 45789999999653 234444333222121 33456666554222111 12346889999999
Q ss_pred hhHHHHhhhhcCCCCCCCchHHHHHHHHHHh---cC-CchHHHHHHhhhc----C----CCHHHHHHHHHhhccCChhhH
Q 020206 143 DALKLLNQCAFGRDHPDASYIELTHEAIKYA---QG-VPIALKILGRFLF----R----KRKEVWENAISKLEMVPQMEI 210 (329)
Q Consensus 143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~---~g-~Plal~~~~~~l~----~----~~~~~~~~~~~~l~~~~~~~~ 210 (329)
+..+++..++.....+....+++++.+++.+ .| .+.++.++-.... . -....+....+.. -
T Consensus 211 e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~-------~ 283 (394)
T PRK00411 211 EIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS-------E 283 (394)
T ss_pred HHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH-------H
Confidence 9999999876322112223445566666666 33 4455555432211 1 1233333333333 1
Q ss_pred HHHHHhhhcCCChhhHhHHHhhhccc----CccChhHHHHH-------HHhCC---cchhhhHHHHhhccceeee
Q 020206 211 QEVLKISYDGLDDKEKNIFLDIACFL----VGEDRDIVTKY-------LNACE---FFATSGIEVLVDKSLITIS 271 (329)
Q Consensus 211 ~~~l~~~~~~L~~~~~~~l~~ls~~~----~~~~~~~l~~~-------~~~~~---~~~~~~l~~L~~~~Ll~~~ 271 (329)
...+...+..||...+.++..++... ..++...+... .+.+. ....+.+..|...|||+..
T Consensus 284 ~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 284 IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 23456678999999999988777443 23444443322 11111 2234579999999999853
No 8
>PF05729 NACHT: NACHT domain
Probab=99.46 E-value=1.4e-12 Score=103.94 Aligned_cols=142 Identities=17% Similarity=0.226 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ 77 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l 77 (329)
|+++|+|++|+|||++++.++..+.... ...+|+. .+..........+...+.......... ....+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~------~~~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESIAP------IEELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccchhh------hHHHH
Confidence 6899999999999999999999876553 2333333 333333222234444444443222111 11112
Q ss_pred Hh-hhcCceEEEEEecCCChhh---------HHHHhcccCC--CCCCcEEEEEeCchhH---HHhcCCCeEEEecCCChh
Q 020206 78 SK-RLTRKKVLIVFDDVNHPRQ---------IEFLIGNLDW--FASGSRILITARDKQA---LINCGVNKIYQIKELVHV 142 (329)
Q Consensus 78 ~~-~~~~~~~LlvlDdv~~~~~---------~~~l~~~l~~--~~~~~~ilitsr~~~~---~~~~~~~~~~~l~~l~~~ 142 (329)
.. .....+++||+|++++... +..++..+.. ..++.++++|+|.... .........+.+.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 11 2346799999999954322 2233322222 2568899999998754 223345568999999999
Q ss_pred hhHHHHhhhh
Q 020206 143 DALKLLNQCA 152 (329)
Q Consensus 143 e~~~ll~~~~ 152 (329)
+..+++++..
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 9
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.45 E-value=7.2e-12 Score=108.09 Aligned_cols=179 Identities=13% Similarity=0.050 Sum_probs=108.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHH----
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS---- 78 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~---- 78 (329)
...++|+|++|+|||||++.++..+...-...+++. .......+++..++..++..... .........+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHH
Confidence 347899999999999999999987653211122222 12335567777887776544221 11111112222
Q ss_pred h-hhcCceEEEEEecCCCh--hhHHHHh---cccCCCCCCcEEEEEeCchhHHHh-------c--CCCeEEEecCCChhh
Q 020206 79 K-RLTRKKVLIVFDDVNHP--RQIEFLI---GNLDWFASGSRILITARDKQALIN-------C--GVNKIYQIKELVHVD 143 (329)
Q Consensus 79 ~-~~~~~~~LlvlDdv~~~--~~~~~l~---~~l~~~~~~~~ilitsr~~~~~~~-------~--~~~~~~~l~~l~~~e 143 (329)
. ...+++.+||+||++.. ..++.+. ...........+++|......... . .....+.+++++.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 23567889999999753 2333332 111111223355666654321110 1 123467899999999
Q ss_pred hHHHHhhhhcCCC--CCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 144 ALKLLNQCAFGRD--HPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 144 ~~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
..+++........ ......++.++.|++.++|+|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987763221 1223456889999999999999999988776
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.42 E-value=6.4e-12 Score=110.40 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=92.6
Q ss_pred CeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhhH
Q 020206 131 NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEI 210 (329)
Q Consensus 131 ~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 210 (329)
...+.+++++.++..+++.+.+.... ....++.++.|++.|+|+|..+..++..+.. ..... .......+.+
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~-----~a~~~-~~~~it~~~v 222 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRVRD-----FAQVR-GQKIINRDIA 222 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHHHH-----HHHHc-CCCCcCHHHH
Confidence 34678999999999999998774322 2345677899999999999877665554310 00000 0001111111
Q ss_pred H---HHHHhhhcCCChhhHhHHH-hhhcccC-ccChhHHHHHHHhCCcchhhhHH-HHhhccceeeecCCce
Q 020206 211 Q---EVLKISYDGLDDKEKNIFL-DIACFLV-GEDRDIVTKYLNACEFFATSGIE-VLVDKSLITISEYNKI 276 (329)
Q Consensus 211 ~---~~l~~~~~~L~~~~~~~l~-~ls~~~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Ll~~~~~~~~ 276 (329)
. ..+...+..+++..+..+. .+..+.+ +++.+.++..++.+....+..++ .|++++||+....|++
T Consensus 223 ~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~ 294 (305)
T TIGR00635 223 LKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRI 294 (305)
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhh
Confidence 1 1245567788888888776 3354543 48889999999888888888899 6999999986666644
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.39 E-value=3.7e-12 Score=112.75 Aligned_cols=137 Identities=14% Similarity=0.064 Sum_probs=94.0
Q ss_pred CeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhh-
Q 020206 131 NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQME- 209 (329)
Q Consensus 131 ~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~- 209 (329)
...+.+++++.++..+++........ ....++.+..|++.|+|.|..+..+...+.. |.... .-.......
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~-----~a~~~-~~~~I~~~~v 243 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVRD-----FAQVK-GDGVITKEIA 243 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHHH-----HHHHc-CCCCCCHHHH
Confidence 35688999999999999998763322 2245677999999999999766665554321 11110 001111111
Q ss_pred --HHHHHHhhhcCCChhhHhHHH-hhhcccC-ccChhHHHHHHHhCCcchhhhHH-HHhhccceeeecCCc
Q 020206 210 --IQEVLKISYDGLDDKEKNIFL-DIACFLV-GEDRDIVTKYLNACEFFATSGIE-VLVDKSLITISEYNK 275 (329)
Q Consensus 210 --~~~~l~~~~~~L~~~~~~~l~-~ls~~~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Ll~~~~~~~ 275 (329)
....+...+..|++..+..+. .+..|.+ ++..+.++..++.+....++.++ .|++.+||+....|+
T Consensus 244 ~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr 314 (328)
T PRK00080 244 DKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGR 314 (328)
T ss_pred HHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCchH
Confidence 223345566788888888886 5556554 48999999999888888888889 999999998666663
No 12
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=2.1e-09 Score=96.96 Aligned_cols=259 Identities=16% Similarity=0.083 Sum_probs=138.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCC------ceEEEeccchhhhcCChHHHHHHHHHHHhc--CCCCC-CCC-Cc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFE------GSYFAHNVREAEETGKLADLRKELLSTLLN--DGNMN-KFP-NI 72 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~-~~~-~~ 72 (329)
.+.+.|+|++|+|||++++.+++.+.+... ..+|+. +........++..++.++.. ...+. ... ..
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 115 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSE 115 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHH
Confidence 357899999999999999999987653322 233333 22334566778888887742 11110 111 11
Q ss_pred chHHHHhhh--cCceEEEEEecCCCh-----hhHHHHhcc--cCCCC-CCcEEEEEeCchhHHHhc------C-CCeEEE
Q 020206 73 GLNFQSKRL--TRKKVLIVFDDVNHP-----RQIEFLIGN--LDWFA-SGSRILITARDKQALINC------G-VNKIYQ 135 (329)
Q Consensus 73 ~~~~l~~~~--~~~~~LlvlDdv~~~-----~~~~~l~~~--l~~~~-~~~~ilitsr~~~~~~~~------~-~~~~~~ 135 (329)
....+.+.+ .+++++||||+++.. +.+..+... ..... .+..+|.++......... . ....+.
T Consensus 116 ~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~ 195 (365)
T TIGR02928 116 VFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEII 195 (365)
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceee
Confidence 223333333 356789999999654 112233222 11111 233455555443221111 1 124688
Q ss_pred ecCCChhhhHHHHhhhhcCC---CCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcC---------CCHHHHHHHHHhhc
Q 020206 136 IKELVHVDALKLLNQCAFGR---DHPDASYIELTHEAIKYAQGVPIALKILGRFLFR---------KRKEVWENAISKLE 203 (329)
Q Consensus 136 l~~l~~~e~~~ll~~~~~~~---~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~---------~~~~~~~~~~~~l~ 203 (329)
+++++.+|..+++..+.... ...+++.-+.+..++..+.|.|.....+...... -....+....+.+
T Consensus 196 f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~- 274 (365)
T TIGR02928 196 FPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI- 274 (365)
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-
Confidence 99999999999999887311 1112222234455666777998655443322110 1223333322222
Q ss_pred cCChhhHHHHHHhhhcCCChhhHhHHHhhhccc----CccChhHHHH----HHHhCC------cchhhhHHHHhhcccee
Q 020206 204 MVPQMEIQEVLKISYDGLDDKEKNIFLDIACFL----VGEDRDIVTK----YLNACE------FFATSGIEVLVDKSLIT 269 (329)
Q Consensus 204 ~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~----~~~~~~~l~~----~~~~~~------~~~~~~l~~L~~~~Ll~ 269 (329)
-...+...+..||.+.+.++..+.... ..++...+.. ++...+ ....+.+..|...|||+
T Consensus 275 ------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~ 348 (365)
T TIGR02928 275 ------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVE 348 (365)
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeE
Confidence 123455678899999888877665321 1233333222 111111 12335789999999998
Q ss_pred eec
Q 020206 270 ISE 272 (329)
Q Consensus 270 ~~~ 272 (329)
...
T Consensus 349 ~~~ 351 (365)
T TIGR02928 349 AEE 351 (365)
T ss_pred EEE
Confidence 543
No 13
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.31 E-value=2.3e-11 Score=102.48 Aligned_cols=178 Identities=20% Similarity=0.182 Sum_probs=88.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHH------HHHHHHHHhcCCCCCC--------
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADL------RKELLSTLLNDGNMNK-------- 68 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~-------- 68 (329)
.+.++|+|+.|+|||+|++++.+...+....++|+........ .....+ ...+...+........
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 4789999999999999999999987554434555542221111 111111 1111222221111000
Q ss_pred --CCCcchHHHHhhhc--CceEEEEEecCCChh-----------hHHHHhcccCCCCCCcEEEEEeCchhHHHh------
Q 020206 69 --FPNIGLNFQSKRLT--RKKVLIVFDDVNHPR-----------QIEFLIGNLDWFASGSRILITARDKQALIN------ 127 (329)
Q Consensus 69 --~~~~~~~~l~~~~~--~~~~LlvlDdv~~~~-----------~~~~l~~~l~~~~~~~~ilitsr~~~~~~~------ 127 (329)
........+.+.+. +++++||+||++... .+..++.... ...+..+++++........
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~v~~~S~~~~~~~~~~~~~ 177 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQNVSIVITGSSDSLMEEFLDDKS 177 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEEEEEEESSHHHHHHTT-TTS
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccCCceEEEECCchHHHHHhhcccC
Confidence 11112222322222 245999999995333 1222222222 1334455566555433332
Q ss_pred --cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 020206 128 --CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL 183 (329)
Q Consensus 128 --~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (329)
......+.+++|+.+++.+++.......... +..++.++.+++.+||+|..|..+
T Consensus 178 ~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 178 PLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp TTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred ccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhcC
Confidence 2333459999999999999999875333111 234566899999999999988753
No 14
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.27 E-value=9.2e-11 Score=101.75 Aligned_cols=155 Identities=21% Similarity=0.298 Sum_probs=98.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
+.-+++|||||+||||||+.++......|...-=+ .....++...+ .. .-.....
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr~i~-e~----------------a~~~~~~ 102 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLREII-EE----------------ARKNRLL 102 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHHHHH-HH----------------HHHHHhc
Confidence 45688999999999999999999776554322111 12222222211 11 1122344
Q ss_pred CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEE--EeCchhHHH---hcCCCeEEEecCCChhhhHHHHhhhhcC-
Q 020206 83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILI--TARDKQALI---NCGVNKIYQIKELVHVDALKLLNQCAFG- 154 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ili--tsr~~~~~~---~~~~~~~~~l~~l~~~e~~~ll~~~~~~- 154 (329)
+++++|++|+|+ +..+.+.|++.+ ..|..++| ||.|+.... .....+++.+++|+.++...++.+....
T Consensus 103 gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~ 179 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDE 179 (436)
T ss_pred CCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhh
Confidence 789999999994 667777787775 35666666 555552111 1245578999999999999999883311
Q ss_pred CC----CCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206 155 RD----HPDASYIELTHEAIKYAQGVPIALKILGR 185 (329)
Q Consensus 155 ~~----~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (329)
.. ......+++.+.++..++|--...-.+..
T Consensus 180 ~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE 214 (436)
T COG2256 180 ERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLE 214 (436)
T ss_pred hcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHH
Confidence 11 11123466788999999997765544433
No 15
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.26 E-value=8.4e-12 Score=108.72 Aligned_cols=283 Identities=18% Similarity=0.186 Sum_probs=189.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
..|.+.++|++||||||++.+++. ....|.+.+|+.+...+.. ...+...+...++....+ .+.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD---~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD---PALVFPTLAGALGLHVQP---GDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCc---hhHhHHHHHhhccccccc---chHHHHHHHHHH
Confidence 458899999999999999999999 8889999998886555433 334444444444433221 111344566667
Q ss_pred cCceEEEEEecCCCh-hhHHHHhcccCCCCCCcEEEEEeCchhHHHhcCCCeEEEecCCChh-hhHHHHhhhhcC---CC
Q 020206 82 TRKKVLIVFDDVNHP-RQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHV-DALKLLNQCAFG---RD 156 (329)
Q Consensus 82 ~~~~~LlvlDdv~~~-~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~~l~~~-e~~~ll~~~~~~---~~ 156 (329)
.+++.++++||..+. .....++..+..+.....++.|+|.... ........+++++.. ++.++|...+.. +-
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 788999999998554 3344444444444555567888887522 234456777887755 677887665511 11
Q ss_pred CCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHh----hccC------ChhhHHHHHHhhhcCCChhhH
Q 020206 157 HPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISK----LEMV------PQMEIQEVLKISYDGLDDKEK 226 (329)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~----l~~~------~~~~~~~~l~~~~~~L~~~~~ 226 (329)
.........+..|++..+|.|++|..++...+..........+++ +... ........+..++.=|+.-++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 112233455889999999999999999999988654444333332 2221 124456778888888999999
Q ss_pred hHHHhhhcccCccChhHHHHHHHhC-----CcchhhhHHHHhhccceeeec---CCceeccHHHHHHHHHHHHhcC
Q 020206 227 NIFLDIACFLVGEDRDIVTKYLNAC-----EFFATSGIEVLVDKSLITISE---YNKIRMHDLMRNMGREIVRQES 294 (329)
Q Consensus 227 ~~l~~ls~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~L~~~~Ll~~~~---~~~~~~H~lir~~~~~~~~~~~ 294 (329)
-.+..++.|...|..+......... .+.+-..+..+++++++...+ .-.|+.-...|.|+.+++.+..
T Consensus 243 ~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 243 ALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred HHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999888887433322221 122334577888999887443 3358888899999998888765
No 16
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.12 E-value=4.8e-10 Score=85.58 Aligned_cols=115 Identities=20% Similarity=0.273 Sum_probs=74.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcC-----CCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR-----FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNF 76 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 76 (329)
+.+.+.|+|++|+|||+++.++++.+... ...++|+. .........+...++..+..............+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 46789999999999999999999976543 35566766 5555689999999999998776641222224455
Q ss_pred HHhhhcCc-eEEEEEecCCCh---hhHHHHhcccCCCCCCcEEEEEeCch
Q 020206 77 QSKRLTRK-KVLIVFDDVNHP---RQIEFLIGNLDWFASGSRILITARDK 122 (329)
Q Consensus 77 l~~~~~~~-~~LlvlDdv~~~---~~~~~l~~~l~~~~~~~~ilitsr~~ 122 (329)
+.+.+... ..+||+|+++.. +.+..+..... ..+.++|++.+..
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 66555544 459999999654 23444433222 5677888887763
No 17
>PRK06893 DNA replication initiation factor; Validated
Probab=99.12 E-value=2.1e-09 Score=90.17 Aligned_cols=154 Identities=17% Similarity=0.175 Sum_probs=95.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.+.|+|++|+|||+|+..+++.+..+...+.|+. .... ...... ..+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----~~~~---~~~~~~---------------------~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----LSKS---QYFSPA---------------------VLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----HHHh---hhhhHH---------------------HHhhcc
Confidence 467899999999999999999998776666667765 2110 000001 111111
Q ss_pred CceEEEEEecCCCh---hhHH-HHhcccCCC-CCCcEE-EEEeCchh---------HHHhcCCCeEEEecCCChhhhHHH
Q 020206 83 RKKVLIVFDDVNHP---RQIE-FLIGNLDWF-ASGSRI-LITARDKQ---------ALINCGVNKIYQIKELVHVDALKL 147 (329)
Q Consensus 83 ~~~~LlvlDdv~~~---~~~~-~l~~~l~~~-~~~~~i-litsr~~~---------~~~~~~~~~~~~l~~l~~~e~~~l 147 (329)
+.-+|++||++.. ..++ .+...+... ..+..+ |+|++..+ ....+.....+++++++.++..++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 2348999999642 2222 232222211 234455 45554422 111223445789999999999999
Q ss_pred HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
+++.+.... ....+++.+.|++.+.|....+..+...+
T Consensus 170 L~~~a~~~~--l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 170 LQRNAYQRG--IELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 998774332 22446778999999999988877766655
No 18
>PF13173 AAA_14: AAA domain
Probab=99.08 E-value=1.1e-09 Score=83.14 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=76.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.++++|+|+.|+|||||++++++... ....++++. ...... . .... . + ..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~---~-~~~~---~---------~----~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD---R-RLAD---P---------D----LLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH---H-HHhh---h---------h----hHHHHHHhhc
Confidence 57899999999999999999998876 223444444 111100 0 0000 0 0 1122333333
Q ss_pred CceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHhc------CCCeEEEecCCChhh
Q 020206 83 RKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINC------GVNKIYQIKELVHVD 143 (329)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~------~~~~~~~l~~l~~~e 143 (329)
.++.+|+||++.....+...+..+.+..++.++++|++.......- +....+.+.||+..|
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 3678999999988888877777776656678999999887555321 233467888988776
No 19
>PF14516 AAA_35: AAA-like domain
Probab=99.03 E-value=5e-08 Score=86.30 Aligned_cols=261 Identities=10% Similarity=0.126 Sum_probs=138.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhh--cCChHHHHHHHHHHHhcCCCCCC-CC---------
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE--TGKLADLRKELLSTLLNDGNMNK-FP--------- 70 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~-~~--------- 70 (329)
...+.|.||..+|||+|...+.+.....-...++++ ...... ......+++.++..+...-..+. ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 467899999999999999999998876544444444 333322 23455555555554433221111 00
Q ss_pred -CcchHHHHhh-h--cCceEEEEEecCCCh----hhHHHHhcccC---CC---C---CCcEEEEEeCchhHH-H-----h
Q 020206 71 -NIGLNFQSKR-L--TRKKVLIVFDDVNHP----RQIEFLIGNLD---WF---A---SGSRILITARDKQAL-I-----N 127 (329)
Q Consensus 71 -~~~~~~l~~~-~--~~~~~LlvlDdv~~~----~~~~~l~~~l~---~~---~---~~~~ilitsr~~~~~-~-----~ 127 (329)
......+.+. + .+++++|+||+++.. .....++..+. .. . +..++++....+... . .
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SP 189 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSP 189 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCC
Confidence 0122222222 1 258999999999532 22223332221 10 0 122333333222111 1 1
Q ss_pred cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCCh
Q 020206 128 CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQ 207 (329)
Q Consensus 128 ~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~ 207 (329)
++....+.|++|+.+|+..|+...... - .+...+.|...++|+|..+..++..+.... ...+.++.......
T Consensus 190 FNIg~~i~L~~Ft~~ev~~L~~~~~~~--~----~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~~-~~~~~l~~~a~~~~- 261 (331)
T PF14516_consen 190 FNIGQPIELPDFTPEEVQELAQRYGLE--F----SQEQLEQLMDWTGGHPYLVQKACYLLVEEQ-ITLEQLLEEAITDN- 261 (331)
T ss_pred cccccceeCCCCCHHHHHHHHHhhhcc--C----CHHHHHHHHHHHCCCHHHHHHHHHHHHHcc-CcHHHHHHHHHHhc-
Confidence 234568899999999999999876421 1 122299999999999999999999997642 12333333221111
Q ss_pred hhHHHHHHhhhcCC--ChhhHhHHHhhhcccCccChhHHHHHHHhCCcchhhhHHHHhhccceeeecCCcee-ccHHHHH
Q 020206 208 MEIQEVLKISYDGL--DDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIR-MHDLMRN 284 (329)
Q Consensus 208 ~~~~~~l~~~~~~L--~~~~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~-~H~lir~ 284 (329)
.....-++.-+..| .++.+..+..+-.-... ..........|...|||... +|.+. -.++.|.
T Consensus 262 ~~~~~hL~~l~~~L~~~~~L~~~~~~il~~~~~-------------~~~~~~~~~~L~~~GLV~~~-~~~~~~~n~iY~~ 327 (331)
T PF14516_consen 262 GIYNDHLDRLLDRLQQNPELLEAYQQILFSGEP-------------VDLDSDDIYKLESLGLVKRD-GNQLEVRNPIYRQ 327 (331)
T ss_pred ccHHHHHHHHHHHHccCHHHHHHHHHHHhCCCC-------------cccChHHHHHHHHCCeEEEe-CCEEEEEcHHHHH
Confidence 11122333333444 23333333322111111 11122346789999999988 44443 3556666
Q ss_pred HH
Q 020206 285 MG 286 (329)
Q Consensus 285 ~~ 286 (329)
|-
T Consensus 328 yF 329 (331)
T PF14516_consen 328 YF 329 (331)
T ss_pred Hh
Confidence 53
No 20
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.02 E-value=2e-08 Score=84.29 Aligned_cols=154 Identities=21% Similarity=0.209 Sum_probs=92.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.+.|+|++|+|||+||+.+++.........+++. ....... . ..+ ...+.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~--~----~~~---------------------~~~~~ 89 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA--D----PEV---------------------LEGLE 89 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh--H----HHH---------------------Hhhcc
Confidence 467899999999999999999988765444444444 1111100 0 011 01111
Q ss_pred CceEEEEEecCCChh---h-HHHHhcccCC-CCCCcEEEEEeCchhHH---------HhcCCCeEEEecCCChhhhHHHH
Q 020206 83 RKKVLIVFDDVNHPR---Q-IEFLIGNLDW-FASGSRILITARDKQAL---------INCGVNKIYQIKELVHVDALKLL 148 (329)
Q Consensus 83 ~~~~LlvlDdv~~~~---~-~~~l~~~l~~-~~~~~~ilitsr~~~~~---------~~~~~~~~~~l~~l~~~e~~~ll 148 (329)
+ .-+|||||++... . ...+...+.. ...+..+|+||+..... ..+.....+.+++++.++...++
T Consensus 90 ~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l 168 (226)
T TIGR03420 90 Q-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAAL 168 (226)
T ss_pred c-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHH
Confidence 2 2389999995322 1 2233322211 12244788888754311 11222457899999999999999
Q ss_pred hhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 149 NQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
........ ....++.++.|.+.+.|||..+..+...+
T Consensus 169 ~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 169 QSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 87652221 12345778889999999999887776554
No 21
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.01 E-value=2.9e-08 Score=80.73 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=91.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC---------------------CCceEEEeccchhhhcCChHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR---------------------FEGSYFAHNVREAEETGKLADLRKELLSTLL 61 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 61 (329)
+..+.++|++|+|||++|+.++..+... ++...++... ...... +-++.+...+.
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~~~-~~i~~i~~~~~ 89 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSIKV-DQVRELVEFLS 89 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcCCH-HHHHHHHHHHc
Confidence 3678999999999999999999886432 1222222100 000111 11222222211
Q ss_pred cCCCCCCCCCcchHHHHhhhcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEec
Q 020206 62 NDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIK 137 (329)
Q Consensus 62 ~~~~~~~~~~~~~~~l~~~~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~ 137 (329)
... ..+.+-++|+||++. ......++..+...++...+|+++++.. .... ......+.+.
T Consensus 90 ~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~ 153 (188)
T TIGR00678 90 RTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFP 153 (188)
T ss_pred cCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCC
Confidence 110 123456899999954 3446667777766556677777776542 2111 1344689999
Q ss_pred CCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch
Q 020206 138 ELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI 178 (329)
Q Consensus 138 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 178 (329)
+++.++..+++... + ..++.+..|++.++|+|.
T Consensus 154 ~~~~~~~~~~l~~~--g------i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 154 PLSEEALLQWLIRQ--G------ISEEAAELLLALAGGSPG 186 (188)
T ss_pred CCCHHHHHHHHHHc--C------CCHHHHHHHHHHcCCCcc
Confidence 99999999999876 1 224669999999999986
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=6.4e-08 Score=91.74 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=68.2
Q ss_pred ceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCchhHHH-h-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQALI-N-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~~~~~-~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
+.-++|||+++.. ..+..++..+.+...+.++|++|++..... . .+....+.++.++.++..+.+.+.+.....
T Consensus 119 r~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-- 196 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-- 196 (830)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--
Confidence 4458999999643 447777777766566788888887753222 1 234568999999999999999887733221
Q ss_pred CchHHHHHHHHHHhcCCch-HHHH
Q 020206 160 ASYIELTHEAIKYAQGVPI-ALKI 182 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Pl-al~~ 182 (329)
...++.+..|++.++|... +|.+
T Consensus 197 ~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 197 AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2345778999999999775 4444
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=5.8e-08 Score=87.14 Aligned_cols=99 Identities=10% Similarity=0.024 Sum_probs=67.1
Q ss_pred ceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
+.-++|+|+++.. .....++..+...++...+|++|.+.. .... .+....+++++++.++..+++...+.... .
T Consensus 119 ~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~ 196 (363)
T PRK14961 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--I 196 (363)
T ss_pred CceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--C
Confidence 4459999999654 346667777665566777777765543 2211 23446899999999999999988663322 1
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHH
Q 020206 160 ASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
...++.+..|+..++|.|..+....
T Consensus 197 ~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 197 DTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2345668889999999997554444
No 24
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.97 E-value=1.3e-07 Score=86.90 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC--CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
.-+.|+|++|+|||+|+..+++.+.... ..++++. ..++...+...+.... .....+.+..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~-------~~~~~~~~~~ 204 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH-------KEIEQFKNEI 204 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh-------hHHHHHHHHh
Confidence 3478999999999999999998765432 2233333 3345555554443211 0122333333
Q ss_pred cCceEEEEEecCCC----hhhHHHHhcccCCC-CCCcEEEEEeCchh-HHHh--------cCCCeEEEecCCChhhhHHH
Q 020206 82 TRKKVLIVFDDVNH----PRQIEFLIGNLDWF-ASGSRILITARDKQ-ALIN--------CGVNKIYQIKELVHVDALKL 147 (329)
Q Consensus 82 ~~~~~LlvlDdv~~----~~~~~~l~~~l~~~-~~~~~ilitsr~~~-~~~~--------~~~~~~~~l~~l~~~e~~~l 147 (329)
+ ..-+||+||+.. ....+.+...+... ..+..+|+||...+ .... +...-...+++++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 3 334889999943 22233443333221 23446888876543 1111 22445678999999999999
Q ss_pred HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
+.+.+..........++++..|++.+.|+|..+..+...+
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9988733221113557889999999999999888776544
No 25
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.96 E-value=1.7e-08 Score=83.87 Aligned_cols=162 Identities=16% Similarity=0.188 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCC--ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE--GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
..+.|+|++|+|||.|...+++.+.+..+ .++|+. ..++...+...+... ....+.+.+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~~---------~~~~~~~~~ 95 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRDG---------EIEEFKDRL 95 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHTT---------SHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHcc---------cchhhhhhh
Confidence 35789999999999999999998765433 344443 344555554444331 233444445
Q ss_pred cCceEEEEEecCCCh---hh-HHHHhcccCC-CCCCcEEEEEeCchhHHH---------hcCCCeEEEecCCChhhhHHH
Q 020206 82 TRKKVLIVFDDVNHP---RQ-IEFLIGNLDW-FASGSRILITARDKQALI---------NCGVNKIYQIKELVHVDALKL 147 (329)
Q Consensus 82 ~~~~~LlvlDdv~~~---~~-~~~l~~~l~~-~~~~~~ilitsr~~~~~~---------~~~~~~~~~l~~l~~~e~~~l 147 (329)
+.-. +|++||++.. .. .+.+...+.. ...|.++|+|+...+... .+...-.+++++++.++-.++
T Consensus 96 ~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 4333 8999999532 21 2233322221 134668999996553211 123556899999999999999
Q ss_pred HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
+++.+....-. ..+++++.|++.+.++...|..+...+
T Consensus 175 l~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 175 LQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 99887332222 456778889999888887776665544
No 26
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=1.4e-07 Score=91.08 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=71.0
Q ss_pred CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
++.-++|||+++ +.+....|+..+...+...++|++|.+. .+... ......+.+.+++.++...++.+.+....
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-- 195 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-- 195 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence 456699999995 4566788888777656677776665544 33322 23457899999999999999988763321
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
....++.+..|+..++|.|..+..++
T Consensus 196 I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 196 LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23445679999999999997665554
No 27
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=1.8e-07 Score=86.90 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc--CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh-
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR--RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR- 80 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~- 80 (329)
..+.++|++|+||||+|+.+++.+.. ..+..++.+............++. .+.... ...-..+..+.+.
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~-----el~~~~---~~~vd~iR~l~~~~ 108 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL-----EIDAAS---NNSVEDVRDLREKV 108 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE-----Eecccc---cCCHHHHHHHHHHH
Confidence 45799999999999999999987642 122234433111000000000000 000000 0000011111111
Q ss_pred ----hcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhh
Q 020206 81 ----LTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCA 152 (329)
Q Consensus 81 ----~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~ 152 (329)
..+++-++|+|+++. ...+..++..+........+|+++... .+... ......+++.+++.++...++...+
T Consensus 109 ~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 109 LLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred hhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHH
Confidence 123456899999964 345667776665544555666555443 22222 2345689999999999999998876
Q ss_pred cCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 153 FGRDHPDASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 153 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
..... ...++.+..|++.++|++.-+....
T Consensus 189 ~~egi--~i~~~Al~~ia~~s~GdlR~aln~L 218 (504)
T PRK14963 189 EAEGR--EAEPEALQLVARLADGAMRDAESLL 218 (504)
T ss_pred HHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33222 1345678999999999997665443
No 28
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.92 E-value=1.7e-07 Score=83.51 Aligned_cols=99 Identities=11% Similarity=0.021 Sum_probs=62.7
Q ss_pred eEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCC
Q 020206 85 KVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDA 160 (329)
Q Consensus 85 ~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~ 160 (329)
+-+||+||++.. .....+...+......+++|+|+.... .... ......+.+.+++.++...++...+..... .
T Consensus 126 ~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~ 203 (337)
T PRK12402 126 YKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--D 203 (337)
T ss_pred CcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--C
Confidence 448999999643 223334333333345567777775432 1111 133457888999999999999887632222 1
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHh
Q 020206 161 SYIELTHEAIKYAQGVPIALKILGR 185 (329)
Q Consensus 161 ~~~~~~~~i~~~~~g~Plal~~~~~ 185 (329)
..++.+..|++.++|++..+.....
T Consensus 204 ~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 204 YDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3467799999999999877655443
No 29
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.92 E-value=2e-07 Score=86.34 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=67.8
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEe-CchhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITA-RDKQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilits-r~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
+++-++|+|+++. ...+..++..+...++...+|++| +...+... ......+++.+++.++...++...+....
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg-- 204 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN-- 204 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--
Confidence 3556899999964 455777777766555566666544 33333322 23446789999999999999998873322
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
....++.+..|++.++|.+.-+....
T Consensus 205 i~ie~eAL~~Ia~~s~GslR~al~~L 230 (507)
T PRK06645 205 LKTDIEALRIIAYKSEGSARDAVSIL 230 (507)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22345678899999999987665444
No 30
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=1.6e-07 Score=88.11 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=69.1
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhHH--HhcCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQAL--INCGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~~--~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
++.-++|+|+++. ......++..+...+++..+|++|.+.... ........+.+.+++.++....+...+....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg-- 194 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ-- 194 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--
Confidence 4556899999964 356677777766556677788777664222 1124556899999999999999988773322
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKIL 183 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~ 183 (329)
....++.+..|++.++|.+..+...
T Consensus 195 I~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 195 IAADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2244567899999999988665544
No 31
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.91 E-value=1.5e-08 Score=87.05 Aligned_cols=153 Identities=17% Similarity=0.252 Sum_probs=95.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+-+++|||+|+||||||+-++..-+..- ..|+. .+....-..-++.+..+... ...+.
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 46789999999999999999988765543 23333 22212222222333333211 12355
Q ss_pred CceEEEEEecC--CChhhHHHHhcccCCCCCCcEEEE--EeCchhHHH---hcCCCeEEEecCCChhhhHHHHhhhhc--
Q 020206 83 RKKVLIVFDDV--NHPRQIEFLIGNLDWFASGSRILI--TARDKQALI---NCGVNKIYQIKELVHVDALKLLNQCAF-- 153 (329)
Q Consensus 83 ~~~~LlvlDdv--~~~~~~~~l~~~l~~~~~~~~ili--tsr~~~~~~---~~~~~~~~~l~~l~~~e~~~ll~~~~~-- 153 (329)
+++++|++|+| .+..+.+.|++.+ ..|..++| ||.++.... ......++.|+.|..++...++.+-..
T Consensus 221 krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 78999999999 4667777777765 35666666 555552211 124556889999999999999887321
Q ss_pred CC-C-------C-CCCchHHHHHHHHHHhcCCchH
Q 020206 154 GR-D-------H-PDASYIELTHEAIKYAQGVPIA 179 (329)
Q Consensus 154 ~~-~-------~-~~~~~~~~~~~i~~~~~g~Pla 179 (329)
+. . . .......+++.++..|+|-..+
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 11 1 1 1124567788899999996543
No 32
>PRK08727 hypothetical protein; Validated
Probab=98.91 E-value=3.8e-08 Score=82.71 Aligned_cols=153 Identities=19% Similarity=0.080 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
..+.|+|++|+|||+|+..+++...++...+.|+. .. +....+.. .+ +.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~----~~------~~~~~~~~-----------------~~-~~l~- 92 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP----LQ------AAAGRLRD-----------------AL-EALE- 92 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe----HH------HhhhhHHH-----------------HH-HHHh-
Confidence 35899999999999999999998776655566665 11 11111110 01 1111
Q ss_pred ceEEEEEecCCC----hhhHHHHhcccCC-CCCCcEEEEEeCchhHHH-----h----cCCCeEEEecCCChhhhHHHHh
Q 020206 84 KKVLIVFDDVNH----PRQIEFLIGNLDW-FASGSRILITARDKQALI-----N----CGVNKIYQIKELVHVDALKLLN 149 (329)
Q Consensus 84 ~~~LlvlDdv~~----~~~~~~l~~~l~~-~~~~~~ilitsr~~~~~~-----~----~~~~~~~~l~~l~~~e~~~ll~ 149 (329)
..-+||+||++. ......++..+.. ...+..+|+||+..+..- . +.....+.+++++.++-.+++.
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 223899999952 2222233332221 123567999998653211 1 1234688999999999999999
Q ss_pred hhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 150 QCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
+++.... -...++.+..|++.+.|....+..+...+
T Consensus 173 ~~a~~~~--l~l~~e~~~~La~~~~rd~r~~l~~L~~l 208 (233)
T PRK08727 173 ERAQRRG--LALDEAAIDWLLTHGERELAGLVALLDRL 208 (233)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8663322 22445778889999988777665544443
No 33
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.88 E-value=6.2e-08 Score=81.55 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=94.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.+.|+|++|+|||+|+..+++........+.|+. ..... ..... +.+...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~~---~~~~~---------------------~~~~~~ 96 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKRA---WFVPE---------------------VLEGME 96 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHHh---hhhHH---------------------HHHHhh
Confidence 357899999999999999999987765544455554 21100 00000 111111
Q ss_pred CceEEEEEecCCCh---hhH-HHHhcccCCC-CC-CcEEEEEeCchhHHH---------hcCCCeEEEecCCChhhhHHH
Q 020206 83 RKKVLIVFDDVNHP---RQI-EFLIGNLDWF-AS-GSRILITARDKQALI---------NCGVNKIYQIKELVHVDALKL 147 (329)
Q Consensus 83 ~~~~LlvlDdv~~~---~~~-~~l~~~l~~~-~~-~~~ilitsr~~~~~~---------~~~~~~~~~l~~l~~~e~~~l 147 (329)
+ --+|++||++.. ..+ +.+...+... .. +..+|+||+..+..- -+.....+++++++.++-.++
T Consensus 97 ~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 97 Q-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQA 175 (235)
T ss_pred h-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHH
Confidence 1 137999999432 222 2222222211 12 347889988653221 123446889999999999999
Q ss_pred HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
+++.+.... -.-.+++.+.|++.+.|....+..+...+
T Consensus 176 l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 176 LQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 987653321 23456789999999999888777666555
No 34
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.88 E-value=8.9e-08 Score=87.51 Aligned_cols=157 Identities=18% Similarity=0.246 Sum_probs=92.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.+.|+|++|+||||||+.+++.....|. .+.. . .....+ ++.+..... .....
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a---~--~~~~~~-ir~ii~~~~----------------~~~~~ 90 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSA---V--TSGVKD-LREVIEEAR----------------QRRSA 90 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEec---c--cccHHH-HHHHHHHHH----------------Hhhhc
Confidence 346889999999999999999987654321 1110 0 011111 111211110 00123
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEE--eCchhHH---HhcCCCeEEEecCCChhhhHHHHhhhhcCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILIT--ARDKQAL---INCGVNKIYQIKELVHVDALKLLNQCAFGR 155 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilit--sr~~~~~---~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~ 155 (329)
+++.+|++|+++. ....+.++..+. .+..+++. |.+.... ........+.+++++.++...++.+.....
T Consensus 91 g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~ 167 (413)
T PRK13342 91 GRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDK 167 (413)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHh
Confidence 4678999999964 344555555543 24444442 3333211 112334678999999999999998865221
Q ss_pred -CCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 156 -DHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 156 -~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
.......++..+.|++.++|++..+..+....
T Consensus 168 ~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 168 ERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred hcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 11113446778899999999998776665544
No 35
>PRK09087 hypothetical protein; Validated
Probab=98.88 E-value=5.7e-08 Score=81.04 Aligned_cols=145 Identities=13% Similarity=0.093 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.+.|+|++|+|||+|++.++.... ..|+. . ..+...+... +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~----~------~~~~~~~~~~---------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH----P------NEIGSDAANA---------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec----H------HHcchHHHHh---------------------hh
Confidence 45789999999999999999887632 22433 1 1111111111 00
Q ss_pred CceEEEEEecCCChh-hHHHHhcccCCC-CCCcEEEEEeCchhHH---------HhcCCCeEEEecCCChhhhHHHHhhh
Q 020206 83 RKKVLIVFDDVNHPR-QIEFLIGNLDWF-ASGSRILITARDKQAL---------INCGVNKIYQIKELVHVDALKLLNQC 151 (329)
Q Consensus 83 ~~~~LlvlDdv~~~~-~~~~l~~~l~~~-~~~~~ilitsr~~~~~---------~~~~~~~~~~l~~l~~~e~~~ll~~~ 151 (329)
+ -+|++||++... .-..+...+... ..+..+|+|++..+.. ..+.....+++++++.++-.+++++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 1 178889994321 112233332211 3467788888754221 11235568999999999999999988
Q ss_pred hcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 152 AFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 152 ~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
+... . -...+++...|++.+.|....+..+...+
T Consensus 166 ~~~~-~-~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 166 FADR-Q-LYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHc-C-CCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 7332 1 23456789999999999888777655544
No 36
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=3.1e-07 Score=86.01 Aligned_cols=100 Identities=11% Similarity=0.082 Sum_probs=69.0
Q ss_pred CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
++.-++|||+++ +......|+..+.+-..++.+|++|.+. .+... .+..+.+.++.++.++..+.+.+.+....
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-- 200 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-- 200 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--
Confidence 455699999996 4466788888877666677777666654 33222 23446789999999999999987763222
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
....++.++.|++.++|.|.....+.
T Consensus 201 i~~d~eAL~~IA~~A~Gs~RdALsLL 226 (700)
T PRK12323 201 IAHEVNALRLLAQAAQGSMRDALSLT 226 (700)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12334668889999999997555443
No 37
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=3.3e-07 Score=84.24 Aligned_cols=158 Identities=14% Similarity=0.096 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC---------------------CCceEEEeccchhhhcCChHHHHHHHHHHHhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR---------------------FEGSYFAHNVREAEETGKLADLRKELLSTLLN 62 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 62 (329)
..+.++|++|+||||+|+.+++.+.-. +..++.+. ........+ ++.+......
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid----aas~~~vdd-IR~Iie~~~~ 110 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID----AASNTSVDD-IKVILENSCY 110 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe----cccCCCHHH-HHHHHHHHHh
Confidence 478899999999999999999854211 12222222 111112222 1122221111
Q ss_pred CCCCCCCCCcchHHHHhhhcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecC
Q 020206 63 DGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKE 138 (329)
Q Consensus 63 ~~~~~~~~~~~~~~l~~~~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~ 138 (329)
.+ ..++.-++|+|+++. .+....++..+.+.++...+|++|.+. .+... ....+.+.+.+
T Consensus 111 ~P----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~ 174 (491)
T PRK14964 111 LP----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQK 174 (491)
T ss_pred cc----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeeccc
Confidence 00 123445899999953 455777777776656677777666443 32222 34557889999
Q ss_pred CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
++.++....+...+.... ....++.+..|++.++|.+..+....
T Consensus 175 l~~~el~~~L~~ia~~Eg--i~i~~eAL~lIa~~s~GslR~alslL 218 (491)
T PRK14964 175 IPTDKLVEHLVDIAKKEN--IEHDEESLKLIAENSSGSMRNALFLL 218 (491)
T ss_pred ccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999988763322 22445778999999999987555444
No 38
>PRK05642 DNA replication initiation factor; Validated
Probab=98.86 E-value=6.7e-08 Score=81.24 Aligned_cols=153 Identities=22% Similarity=0.240 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+.+.|+|++|+|||.|++.+++.+..+...++|+. . .++.... ..+.+.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~----~------~~~~~~~------------------~~~~~~~~~ 97 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP----L------AELLDRG------------------PELLDNLEQ 97 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee----H------HHHHhhh------------------HHHHHhhhh
Confidence 56899999999999999999988766555566665 1 1121110 112222222
Q ss_pred ceEEEEEecCCC---hhh-HHHHhcccCCC-CCCcEEEEEeCchhHHHh---------cCCCeEEEecCCChhhhHHHHh
Q 020206 84 KKVLIVFDDVNH---PRQ-IEFLIGNLDWF-ASGSRILITARDKQALIN---------CGVNKIYQIKELVHVDALKLLN 149 (329)
Q Consensus 84 ~~~LlvlDdv~~---~~~-~~~l~~~l~~~-~~~~~ilitsr~~~~~~~---------~~~~~~~~l~~l~~~e~~~ll~ 149 (329)
-. ++++||+.. ... -+.+...+... ..+..+|+|++..+..-. +.....+.+++++.++-.++++
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 688999942 122 23344333221 346678888876532211 1233578899999999999998
Q ss_pred hhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 150 QCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
.++.... -...+++.+.|++.+.|....+..+...|
T Consensus 177 ~ka~~~~--~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRG--LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6553321 22446789999999999888777766665
No 39
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.85 E-value=4e-07 Score=80.54 Aligned_cols=164 Identities=12% Similarity=0.065 Sum_probs=92.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.+.|+|++|+|||++++.+++..........++. .. ....... +........+....+ ...
T Consensus 38 ~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~-~~~~~~i~~~~~~~~--------------~~~ 100 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGI-DVIRNKIKEFARTAP--------------VGG 100 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccch-HHHHHHHHHHHhcCC--------------CCC
Confidence 355799999999999999999987643221111111 00 0011111 111111111111110 011
Q ss_pred CceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCchh-HHH-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
..+-++++|+++.. .....+...+......+.+|+++.... ... .......+++++++.++...++...+.....
T Consensus 101 ~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~- 179 (319)
T PRK00440 101 APFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI- 179 (319)
T ss_pred CCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC-
Confidence 23458999998543 333444444444445667777664431 111 1123346899999999999999887733221
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILGR 185 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (329)
...++.+..+++.++|++.-+.....
T Consensus 180 -~i~~~al~~l~~~~~gd~r~~~~~l~ 205 (319)
T PRK00440 180 -EITDDALEAIYYVSEGDMRKAINALQ 205 (319)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23467799999999999887555443
No 40
>PRK04195 replication factor C large subunit; Provisional
Probab=98.85 E-value=2.4e-07 Score=86.43 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=94.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.+.|+||+|+||||+|..+++.+. ++ .+.+. .+.. ...+.+..+......... ...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~--~~-~ieln----asd~-r~~~~i~~~i~~~~~~~s--------------l~~ 96 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG--WE-VIELN----ASDQ-RTADVIERVAGEAATSGS--------------LFG 96 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEc----cccc-ccHHHHHHHHHHhhccCc--------------ccC
Confidence 57899999999999999999998863 22 11111 1111 112223333222211111 011
Q ss_pred CceEEEEEecCCCh------hhHHHHhcccCCCCCCcEEEEEeCchh-H-H-HhcCCCeEEEecCCChhhhHHHHhhhhc
Q 020206 83 RKKVLIVFDDVNHP------RQIEFLIGNLDWFASGSRILITARDKQ-A-L-INCGVNKIYQIKELVHVDALKLLNQCAF 153 (329)
Q Consensus 83 ~~~~LlvlDdv~~~------~~~~~l~~~l~~~~~~~~ilitsr~~~-~-~-~~~~~~~~~~l~~l~~~e~~~ll~~~~~ 153 (329)
.++-+||+|+++.. .....+...+. ..+..+|+++.+.. . . ........+.+++++.++....+...+.
T Consensus 97 ~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 97 ARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICR 174 (482)
T ss_pred CCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHH
Confidence 25679999999643 22444544443 23445666664431 1 1 1123456789999999999999988773
Q ss_pred CCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhc
Q 020206 154 GRDHPDASYIELTHEAIKYAQGVPIALKILGRFLF 188 (329)
Q Consensus 154 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 188 (329)
..... ..++++..|++.++|....+......+.
T Consensus 175 ~egi~--i~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 175 KEGIE--CDDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred HcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 32222 3357799999999998887765554443
No 41
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=5.2e-07 Score=83.19 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=64.3
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
+++-++|+|+++. ......++..+...++...+|++|.+. .+... ......+.+.+++.++....+...+....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-- 193 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-- 193 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC--
Confidence 3556999999964 344566666665444455555555443 22221 23556889999999999999988763222
Q ss_pred CCchHHHHHHHHHHhcCCc-hHHHHHHh
Q 020206 159 DASYIELTHEAIKYAQGVP-IALKILGR 185 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~P-lal~~~~~ 185 (329)
....++++..|++.++|.. .++..+-.
T Consensus 194 i~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 194 IEIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1244577899999887764 45554443
No 42
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=3e-07 Score=85.62 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC---------------------CCceEEEeccchhhhcCChHHHHHHHHHHHhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR---------------------FEGSYFAHNVREAEETGKLADLRKELLSTLLN 62 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 62 (329)
..+.++|++|+||||+|+.+++.+... ++.+..+. ......+.++ +.+...+..
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid----aas~~~v~~i-R~l~~~~~~ 113 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD----AASRTKVEDT-RELLDNIPY 113 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc----ccccCCHHHH-HHHHHHHhh
Confidence 457899999999999999999875321 11111111 0011112211 222222111
Q ss_pred CCCCCCCCCcchHHHHhhhcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecC
Q 020206 63 DGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKE 138 (329)
Q Consensus 63 ~~~~~~~~~~~~~~l~~~~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~ 138 (329)
. -..++.-++|+|+++. .+....++..+...+...++|++|.+. ..... .+....+.+++
T Consensus 114 ~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~ 177 (509)
T PRK14958 114 A----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQ 177 (509)
T ss_pred c----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCC
Confidence 0 0123445899999963 456777777777666677777766544 22211 23445788999
Q ss_pred CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
++.++....+...+..... ...++.+..|++.++|.+..+....
T Consensus 178 l~~~~i~~~l~~il~~egi--~~~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 178 LPPLQIAAHCQHLLKEENV--EFENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred CCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999888777633221 2345668899999999987665544
No 43
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.83 E-value=5.9e-07 Score=83.15 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
+-+.|+|++|+|||+|+..+++.+...++. ++|+. ..++...+...+... ....+.+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~---------~~~~~~~~~ 209 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFVNALRNN---------TMEEFKEKY 209 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHcC---------cHHHHHHHH
Confidence 458999999999999999999988776533 33333 222333333332211 122333333
Q ss_pred cCceEEEEEecCCCh----hhHHHHhcccCCC-CCCcEEEEEeCchhHH-H--------hcCCCeEEEecCCChhhhHHH
Q 020206 82 TRKKVLIVFDDVNHP----RQIEFLIGNLDWF-ASGSRILITARDKQAL-I--------NCGVNKIYQIKELVHVDALKL 147 (329)
Q Consensus 82 ~~~~~LlvlDdv~~~----~~~~~l~~~l~~~-~~~~~ilitsr~~~~~-~--------~~~~~~~~~l~~l~~~e~~~l 147 (329)
+ +.-+|+|||++.. ...+.++..+... ..+..+++||...+.. . .+.....+.+++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 3448999999431 1223343332211 2345577777654211 1 123345789999999999999
Q ss_pred HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
++..+... .....+++++.|++.+.|+...+.-+...+
T Consensus 289 l~~~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l 326 (450)
T PRK00149 289 LKKKAEEE--GIDLPDEVLEFIAKNITSNVRELEGALNRL 326 (450)
T ss_pred HHHHHHHc--CCCCCHHHHHHHHcCcCCCHHHHHHHHHHH
Confidence 99887432 222446779999999999988766554444
No 44
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=3.9e-07 Score=83.01 Aligned_cols=100 Identities=9% Similarity=-0.028 Sum_probs=68.8
Q ss_pred CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
++.-++|+|+++ +.+....++..+........+|++|.+. .+... ....+.+.+.+++.++..+++...+....
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-- 197 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-- 197 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--
Confidence 455699999996 4456788877776545566666566543 22222 23446799999999999999988763322
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
....++++..|++.++|.+.-...+.
T Consensus 198 i~~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 198 VQYDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred CCCCHHHHHHHHHHcCChHHHHHHHH
Confidence 22346779999999999996555444
No 45
>PLN03025 replication factor C subunit; Provisional
Probab=98.81 E-value=3.2e-07 Score=81.01 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=92.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc-CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR-RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
.+-+.++||+|+||||+|..+++.+.. .+...+.-.+ .+..... +.++.....+...... ..
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~-~~vr~~i~~~~~~~~~-------------~~ 96 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGI-DVVRNKIKMFAQKKVT-------------LP 96 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccH-HHHHHHHHHHHhcccc-------------CC
Confidence 355789999999999999999987633 2322221111 1111111 2233332222111100 00
Q ss_pred cCceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCC
Q 020206 82 TRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDH 157 (329)
Q Consensus 82 ~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~ 157 (329)
.++.-++|+|+++.. .....+...+...+...++++++... ..... ......+++++++.++....+...+.....
T Consensus 97 ~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi 176 (319)
T PLN03025 97 PGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKV 176 (319)
T ss_pred CCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCC
Confidence 134569999999643 33344443333334556677666443 22111 123357889999999999999887633221
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206 158 PDASYIELTHEAIKYAQGVPIALKILGR 185 (329)
Q Consensus 158 ~~~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (329)
...++.+..|++.++|....+.....
T Consensus 177 --~i~~~~l~~i~~~~~gDlR~aln~Lq 202 (319)
T PLN03025 177 --PYVPEGLEAIIFTADGDMRQALNNLQ 202 (319)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23356789999999998866554443
No 46
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.81 E-value=1.6e-07 Score=78.85 Aligned_cols=150 Identities=18% Similarity=0.177 Sum_probs=90.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.+.|+|++|+|||+||..+++.....-....++. .... ...+ ...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~~---------~~~~----------------------~~~- 88 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AASP---------LLAF----------------------DFD- 88 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHHh---------HHHH----------------------hhc-
Confidence 357899999999999999999987654433444443 1110 0000 001
Q ss_pred CceEEEEEecCCCh--hhHHHHhcccCCC-CCCc-EEEEEeCchhHHH--------hcCCCeEEEecCCChhhhHHHHhh
Q 020206 83 RKKVLIVFDDVNHP--RQIEFLIGNLDWF-ASGS-RILITARDKQALI--------NCGVNKIYQIKELVHVDALKLLNQ 150 (329)
Q Consensus 83 ~~~~LlvlDdv~~~--~~~~~l~~~l~~~-~~~~-~ilitsr~~~~~~--------~~~~~~~~~l~~l~~~e~~~ll~~ 150 (329)
...-+|++||++.. .....+...+... ..+. .+++|++..+... .+.....+.+++++.++-..++.+
T Consensus 89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 12337999999532 2223333333211 1233 4666666432111 112346889999999887788776
Q ss_pred hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
...... ....+++.+.|++.+.||+..+..+...+
T Consensus 169 ~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 169 AAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 542222 22445779999999999999888877766
No 47
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5.9e-07 Score=80.07 Aligned_cols=255 Identities=16% Similarity=0.098 Sum_probs=140.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCC-CcchHHHHhhh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFP-NIGLNFQSKRL 81 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~l~~~~ 81 (329)
-+.|+|++|+|||+.++.+++.+.+..+. ++++. +........++..++..+...... +.. ......+.+.+
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~i~~~i~~~~~~~p~~-g~~~~~~~~~l~~~~ 118 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQVLSKILNKLGKVPLT-GDSSLEILKRLYDNL 118 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHHHHHHHHHHcCCCCCC-CCchHHHHHHHHHHH
Confidence 38899999999999999999988766444 45655 555677888888888888633322 222 22444444444
Q ss_pred c--CceEEEEEecCCChhhH--HHHhcccCCCCC-CcE--EEEEeCchhHHHhcC-------CCeEEEecCCChhhhHHH
Q 020206 82 T--RKKVLIVFDDVNHPRQI--EFLIGNLDWFAS-GSR--ILITARDKQALINCG-------VNKIYQIKELVHVDALKL 147 (329)
Q Consensus 82 ~--~~~~LlvlDdv~~~~~~--~~l~~~l~~~~~-~~~--ilitsr~~~~~~~~~-------~~~~~~l~~l~~~e~~~l 147 (329)
. ++.+++|||+++....- +.+...+..... ..+ +|..+.+......+. ....+..++.+.+|...+
T Consensus 119 ~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~I 198 (366)
T COG1474 119 SKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDI 198 (366)
T ss_pred HhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHH
Confidence 3 47899999999533211 222222221111 232 333444432222211 223578999999999999
Q ss_pred HhhhhcCCC---CCCCchHHHHHHHHHHhcCCc-hHHHHH--HhhhcCC------CHHHHHHHHHhhccCChhhHHHHHH
Q 020206 148 LNQCAFGRD---HPDASYIELTHEAIKYAQGVP-IALKIL--GRFLFRK------RKEVWENAISKLEMVPQMEIQEVLK 215 (329)
Q Consensus 148 l~~~~~~~~---~~~~~~~~~~~~i~~~~~g~P-lal~~~--~~~l~~~------~~~~~~~~~~~l~~~~~~~~~~~l~ 215 (329)
+..++.... ..++..-+.+..++...+|-. .||..+ |+.+.+. ..+...... ...-.....
T Consensus 199 l~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~-------~~~~~~~~~ 271 (366)
T COG1474 199 LRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQ-------EEIERDVLE 271 (366)
T ss_pred HHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH-------HHhhHHHHH
Confidence 999874332 222333333444445555422 222222 1222110 111111110 111123455
Q ss_pred hhhcCCChhhHhHHHhhhcccCccChhH----HHHHHHhCCc---chhhhHHHHhhccceeee
Q 020206 216 ISYDGLDDKEKNIFLDIACFLVGEDRDI----VTKYLNACEF---FATSGIEVLVDKSLITIS 271 (329)
Q Consensus 216 ~~~~~L~~~~~~~l~~ls~~~~~~~~~~----l~~~~~~~~~---~~~~~l~~L~~~~Ll~~~ 271 (329)
..+..|+.+.+-.+........+++... ...++..... ...+.+..|...|+|...
T Consensus 272 ~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 272 EVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFSDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHHHHHHHHHhcCeEEee
Confidence 6688999998888777665533444333 3333333333 233578889999998743
No 48
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=6.3e-07 Score=83.61 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=67.6
Q ss_pred CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
+++-++|+|+++ +......++..+...+....+|++|.+. ..... ......+++.+++.++....+...+....
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-- 195 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-- 195 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--
Confidence 455699999996 4455777777776655666666655443 22222 23457899999999999988887653222
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
....++.+..|++.++|.+.-+..+.
T Consensus 196 i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 196 INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22445678899999999886443333
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=5.1e-07 Score=79.55 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=95.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc-----CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR-----RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ 77 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l 77 (329)
+.+..++|+.|+|||++|..+++.+.. .++....+.... ........ ++++...+...+
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~--~~~i~v~~-ir~~~~~~~~~p------------- 89 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN--KKSIGVDD-IRNIIEEVNKKP------------- 89 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc--CCCCCHHH-HHHHHHHHhcCc-------------
Confidence 457789999999999999999997532 233332222100 01122222 223333222111
Q ss_pred HhhhcCceEEEEEecC--CChhhHHHHhcccCCCCCCcEEEEEeCchhHH-Hh-cCCCeEEEecCCChhhhHHHHhhhhc
Q 020206 78 SKRLTRKKVLIVFDDV--NHPRQIEFLIGNLDWFASGSRILITARDKQAL-IN-CGVNKIYQIKELVHVDALKLLNQCAF 153 (329)
Q Consensus 78 ~~~~~~~~~LlvlDdv--~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~-~~-~~~~~~~~l~~l~~~e~~~ll~~~~~ 153 (329)
..+++-++|+|++ .+.+....++..+.+.++++.+|++|.+.... .. ....+.+.+.++++++...++.+...
T Consensus 90 ---~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~ 166 (313)
T PRK05564 90 ---YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN 166 (313)
T ss_pred ---ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc
Confidence 1133446777776 46667888888888777788888887665322 11 23456889999999999999876641
Q ss_pred CCCCCCCchHHHHHHHHHHhcCCchHHH
Q 020206 154 GRDHPDASYIELTHEAIKYAQGVPIALK 181 (329)
Q Consensus 154 ~~~~~~~~~~~~~~~i~~~~~g~Plal~ 181 (329)
. ..++.++.++..++|.|.-+.
T Consensus 167 -~-----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 167 -D-----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred -C-----CCHHHHHHHHHHcCCCHHHHH
Confidence 1 123447788999999987554
No 50
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=7.9e-07 Score=84.07 Aligned_cols=99 Identities=10% Similarity=0.098 Sum_probs=68.5
Q ss_pred ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHH-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
+.-++|||+++ +......++..+.+.+....+|++|.+. .+.. .......+.+++++.++..+.+...+.....
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-- 201 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-- 201 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--
Confidence 34589999996 4456777887777656666777666443 2222 2345578999999999999999887632221
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHH
Q 020206 160 ASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
...++.+..|++.++|.+..+..+.
T Consensus 202 ~ie~~AL~~La~~s~GslR~al~lL 226 (618)
T PRK14951 202 PAEPQALRLLARAARGSMRDALSLT 226 (618)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2345678999999999887665553
No 51
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.80 E-value=1.4e-06 Score=81.61 Aligned_cols=161 Identities=12% Similarity=0.107 Sum_probs=97.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCC--CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.++|+|.+|+|||.|+..+++.....+ ..++|+. ..++...+...+... ....+.+...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~---------~~~~f~~~y~ 376 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG---------KGDSFRRRYR 376 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc---------cHHHHHHHhh
Confidence 489999999999999999999876543 2334443 233333333332211 1222333333
Q ss_pred CceEEEEEecCCC----hhhHHHHhcccCCC-CCCcEEEEEeCchhHH---------HhcCCCeEEEecCCChhhhHHHH
Q 020206 83 RKKVLIVFDDVNH----PRQIEFLIGNLDWF-ASGSRILITARDKQAL---------INCGVNKIYQIKELVHVDALKLL 148 (329)
Q Consensus 83 ~~~~LlvlDdv~~----~~~~~~l~~~l~~~-~~~~~ilitsr~~~~~---------~~~~~~~~~~l~~l~~~e~~~ll 148 (329)
+ .-+|+|||++. ...-+.|+..+... ..+..|||||...+.. .-+...-.+.|...+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 24888999942 22123333333221 2355688888764211 11234567899999999999999
Q ss_pred hhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 149 NQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
++.+.... ....++++..|++.+.++...|.-+...|
T Consensus 456 ~kka~~r~--l~l~~eVi~yLa~r~~rnvR~LegaL~rL 492 (617)
T PRK14086 456 RKKAVQEQ--LNAPPEVLEFIASRISRNIRELEGALIRV 492 (617)
T ss_pred HHHHHhcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 98873322 22446789999999998877766655444
No 52
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=3.5e-07 Score=86.50 Aligned_cols=100 Identities=10% Similarity=0.038 Sum_probs=67.3
Q ss_pred CceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
++.-++|||+++.. .....++..+.......++|++|.+.. +... .+....+.+.+++.++....+.+.+.....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi- 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI- 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 34568999999643 346666666655456677777775442 1111 123346788899999999999887733222
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
...++.+..|++.++|.+.-+..+.
T Consensus 197 -~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 197 -AYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred -CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 2345678999999999997666555
No 53
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=1.1e-06 Score=78.42 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=65.6
Q ss_pred CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
+.+.++|+|+++ +......++..+...+.+..+|++|.+.. .... ....+.+.+.+++.+++.+++..... . .+
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~-~-~~ 217 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP-D-LP 217 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc-c-CC
Confidence 456799999995 45667777777765555666777776653 2222 24557899999999999999987641 1 11
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
.+....++..++|+|+....+.
T Consensus 218 ----~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 218 ----DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHh
Confidence 1224678999999998554443
No 54
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.76 E-value=1.6e-06 Score=77.94 Aligned_cols=101 Identities=12% Similarity=0.030 Sum_probs=67.3
Q ss_pred ceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
.+-++|+|+++.. .....++..+...++...+|++|.+.. .... ......++++++++++..+++...+.....
T Consensus 117 ~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-- 194 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-- 194 (355)
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC--
Confidence 4458999998543 456667766655455666667765543 2222 234467889999999999999887633221
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206 160 ASYIELTHEAIKYAQGVPIALKILGRF 186 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~~~~ 186 (329)
...++.+..+++.++|.|..+......
T Consensus 195 ~i~~~a~~~l~~~~~g~~~~a~~~lek 221 (355)
T TIGR02397 195 KIEDEALELIARAADGSLRDALSLLDQ 221 (355)
T ss_pred CCCHHHHHHHHHHcCCChHHHHHHHHH
Confidence 233567889999999999877665543
No 55
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=7.3e-07 Score=79.17 Aligned_cols=97 Identities=12% Similarity=0.127 Sum_probs=64.4
Q ss_pred CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHhc-CCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALINC-GVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
++.-++|+|+++ +......++..+...+.+..+|++|... ...... .....+.+.+++.++..+++...... ..
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC-
Confidence 455699999995 4555667777776545556555555443 222222 34468999999999999999875421 11
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKIL 183 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~ 183 (329)
..++.+..+++.++|+|.....+
T Consensus 218 --~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 218 --SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22455788999999999855443
No 56
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=7.2e-07 Score=80.32 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=61.4
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
+++-++|+|+++. ......++..+...+++..+|++|.+. .+.+. .+..+.+.+++++.++..+++.+.. +
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C----
Confidence 3445888899953 445566777666555666666666654 33322 2345789999999999999887542 1
Q ss_pred CCchHHHHHHHHHHhcCCchHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALK 181 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~ 181 (329)
..++.+..++..++|.|..-.
T Consensus 191 --~~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 191 --VDPETARRAARASQGHIGRAR 211 (394)
T ss_pred --CCHHHHHHHHHHcCCCHHHHH
Confidence 113447889999999996443
No 57
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.71 E-value=4.4e-07 Score=83.33 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=97.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
-+.|+|++|+|||+|+..+++.+.+.++. ++|+. ..++...+...+... ....+.+...
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~---------~~~~f~~~~~ 192 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG---------KLNEFREKYR 192 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc---------cHHHHHHHHH
Confidence 48999999999999999999987765432 34433 233444444443221 1122333333
Q ss_pred CceEEEEEecCCCh---h-hHHHHhcccCCC-CCCcEEEEEeC-chhHHHh--------cCCCeEEEecCCChhhhHHHH
Q 020206 83 RKKVLIVFDDVNHP---R-QIEFLIGNLDWF-ASGSRILITAR-DKQALIN--------CGVNKIYQIKELVHVDALKLL 148 (329)
Q Consensus 83 ~~~~LlvlDdv~~~---~-~~~~l~~~l~~~-~~~~~ilitsr-~~~~~~~--------~~~~~~~~l~~l~~~e~~~ll 148 (329)
...-+|++||++.. . .-..++..+... ..+..+|+||. .+..... +.....+.+++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 34458999999532 1 112333332211 23456888775 3322211 123447789999999999999
Q ss_pred hhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 149 NQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
++.+.... ....++++..|++.+.|+...|.-+...+
T Consensus 273 ~~~~~~~~--~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l 309 (440)
T PRK14088 273 RKMLEIEH--GELPEEVLNFVAENVDDNLRRLRGAIIKL 309 (440)
T ss_pred HHHHHhcC--CCCCHHHHHHHHhccccCHHHHHHHHHHH
Confidence 88873222 22446789999999999887776665444
No 58
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.71 E-value=4.2e-07 Score=83.01 Aligned_cols=162 Identities=17% Similarity=0.134 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCC--ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE--GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
..+.|+|++|+|||+|++.+++.+.+..+ .++|+. ..++...+...+... ....+.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~---------~~~~~~~~~ 197 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN---------KMEEFKEKY 197 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC---------CHHHHHHHH
Confidence 35789999999999999999998776543 233433 223333333333221 122233333
Q ss_pred cCceEEEEEecCCCh----hhHHHHhcccCCC-CCCcEEEEEeCchhH-HHh--------cCCCeEEEecCCChhhhHHH
Q 020206 82 TRKKVLIVFDDVNHP----RQIEFLIGNLDWF-ASGSRILITARDKQA-LIN--------CGVNKIYQIKELVHVDALKL 147 (329)
Q Consensus 82 ~~~~~LlvlDdv~~~----~~~~~l~~~l~~~-~~~~~ilitsr~~~~-~~~--------~~~~~~~~l~~l~~~e~~~l 147 (329)
.+ .-+|+|||++.. ...+.++..+... ..+..+|+|+...+. ... +.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 32 338999999532 1223333333211 235567887765321 111 12334688999999999999
Q ss_pred HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
+.+.+.... ....++++..|++.+.|++..+.-+...+
T Consensus 277 l~~~~~~~~--~~l~~e~l~~ia~~~~~~~r~l~~~l~~l 314 (405)
T TIGR00362 277 LQKKAEEEG--LELPDEVLEFIAKNIRSNVRELEGALNRL 314 (405)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 998874322 22346779999999999988766555444
No 59
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.70 E-value=9.3e-07 Score=81.05 Aligned_cols=157 Identities=12% Similarity=0.052 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
.-+.|+|++|+|||+|++.+++.+......++++. ...+...+...+... ....+.....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~~---------~~~~f~~~~~- 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRSG---------EMQRFRQFYR- 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhcc---------hHHHHHHHcc-
Confidence 35789999999999999999998765544455544 223333333333211 1223333333
Q ss_pred ceEEEEEecCCCh----hhHHHHhcccCCC-CCCcEEEEEeCchh-HHHh--------cCCCeEEEecCCChhhhHHHHh
Q 020206 84 KKVLIVFDDVNHP----RQIEFLIGNLDWF-ASGSRILITARDKQ-ALIN--------CGVNKIYQIKELVHVDALKLLN 149 (329)
Q Consensus 84 ~~~LlvlDdv~~~----~~~~~l~~~l~~~-~~~~~ilitsr~~~-~~~~--------~~~~~~~~l~~l~~~e~~~ll~ 149 (329)
..-+|++||++.. ...+.+...+... ..+..+|+||...+ .... +.....+.+.+++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 3348889998432 2223333332211 23556888885532 1111 2234678899999999999998
Q ss_pred hhhcCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 020206 150 QCAFGRDHPDASYIELTHEAIKYAQGVPIALKI 182 (329)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 182 (329)
+.+.... ....++++..|+..+.++-..+.-
T Consensus 282 ~k~~~~~--~~l~~evl~~la~~~~~dir~L~g 312 (445)
T PRK12422 282 RKAEALS--IRIEETALDFLIEALSSNVKSLLH 312 (445)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHH
Confidence 8773322 234467788888888877644443
No 60
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=5.6e-07 Score=85.28 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=69.6
Q ss_pred CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
++.-++|||+++ +......++..+.+-+...++|++|.+.. +... ......+.+++++.++....+...+....
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-- 195 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-- 195 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--
Confidence 455699999995 45667888887776566777766665542 2222 23457899999999999999988762222
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
....++.+..|+..++|.+.....+.
T Consensus 196 i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 196 IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12345668889999999988555544
No 61
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=4.1e-06 Score=82.05 Aligned_cols=100 Identities=7% Similarity=0.039 Sum_probs=68.3
Q ss_pred CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
++.-++|||+++ +.+....|+..+.+....+.+|++|.+. .+... .+..+.+.+..++.++..+++.+.+.....
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv- 197 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV- 197 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-
Confidence 344588999996 4456777777777666777777666443 33322 245578999999999999999887632221
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
...++.+..|++.++|.+..+....
T Consensus 198 -~id~eal~lLa~~sgGdlR~Al~eL 222 (824)
T PRK07764 198 -PVEPGVLPLVIRAGGGSVRDSLSVL 222 (824)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2345668889999999996554444
No 62
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=4.1e-06 Score=78.98 Aligned_cols=99 Identities=9% Similarity=0.047 Sum_probs=67.5
Q ss_pred ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
+.-++|+|+++ +.+....|+..+...+....+|++|.+. .+... ......+++.+++.++..+++...+.....
T Consensus 118 ~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-- 195 (584)
T PRK14952 118 RYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-- 195 (584)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--
Confidence 44589999995 4556777777777666677766655443 33322 234578999999999999999887633221
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHH
Q 020206 160 ASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
...++.+..|++.++|.+..+..+.
T Consensus 196 ~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 196 VVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2335668889999999986444443
No 63
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.4e-06 Score=81.60 Aligned_cols=100 Identities=10% Similarity=0.040 Sum_probs=66.3
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
+++-++|+|+++. .+....++..+...+....+|++|.+.. .... ......+.+++++.++....+.+.+....
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-- 195 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-- 195 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--
Confidence 4556999999964 3456777777766556677766665432 2211 12345788999999999998887663222
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
....++.+..|++.++|.+..+..+.
T Consensus 196 i~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 196 IPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12345668899999999887444443
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.66 E-value=3.5e-07 Score=70.80 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+.+.|+|++|+|||++++.+++.+......++++.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 568999999999999999999998754434444544
No 65
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=2.4e-06 Score=80.05 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=64.5
Q ss_pred EEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCCc
Q 020206 86 VLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDAS 161 (329)
Q Consensus 86 ~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~ 161 (329)
-++|+|+++. .+....++..+...+....+|++|... .+... ....+.+++.+++.++....+...+.... ...
T Consensus 121 KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg--i~I 198 (605)
T PRK05896 121 KVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK--IKI 198 (605)
T ss_pred EEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC--CCC
Confidence 3699999954 455666766665545566666555443 23222 23456889999999999999988763221 123
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHhh
Q 020206 162 YIELTHEAIKYAQGVPIALKILGRF 186 (329)
Q Consensus 162 ~~~~~~~i~~~~~g~Plal~~~~~~ 186 (329)
.++.+..+++.++|.+..+......
T Consensus 199 s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 199 EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3566889999999988755444443
No 66
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=3.8e-06 Score=80.05 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=68.0
Q ss_pred ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
.+-++|+|+++ +.+....|+..+........+|+++.+. ..... .+....+.+..++..+....+...+.....
T Consensus 120 ~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-- 197 (585)
T PRK14950 120 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-- 197 (585)
T ss_pred CeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC--
Confidence 45689999995 3455777777766555566666666443 22221 234457889999999999988877633221
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 160 ASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
...++.+..|+..++|++..+......+
T Consensus 198 ~i~~eal~~La~~s~Gdlr~al~~LekL 225 (585)
T PRK14950 198 NLEPGALEAIARAATGSMRDAENLLQQL 225 (585)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2345678899999999998666655443
No 67
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=6.5e-06 Score=76.35 Aligned_cols=102 Identities=7% Similarity=-0.018 Sum_probs=67.4
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
+++-++|+|+++. ......++..+...++...+|++|.+. ..... ......+.+.+++.++...++...+.....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi- 196 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI- 196 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 3556999999963 345666766666545555666655433 22222 234567899999999999999887632221
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILGRF 186 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~~~ 186 (329)
...++.+..|++.++|++..+......
T Consensus 197 -~id~~al~~La~~s~G~lr~al~~Ldk 223 (486)
T PRK14953 197 -EYEEKALDLLAQASEGGMRDAASLLDQ 223 (486)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 234566889999999998866655533
No 68
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=1.1e-06 Score=77.42 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=63.4
Q ss_pred EEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCCc
Q 020206 86 VLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDAS 161 (329)
Q Consensus 86 ~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~ 161 (329)
-++|+|+++ +.+....++..+.+.+++..+|++|.+.. +... .+..+.+.+.+++.+++.+.+.... +..
T Consensus 108 kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~----- 181 (328)
T PRK05707 108 KVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES----- 181 (328)
T ss_pred eEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC-----
Confidence 355779995 55678888888877666777777777653 3322 2345678999999999999997654 111
Q ss_pred hHHHHHHHHHHhcCCchHHHHH
Q 020206 162 YIELTHEAIKYAQGVPIALKIL 183 (329)
Q Consensus 162 ~~~~~~~i~~~~~g~Plal~~~ 183 (329)
.++.+..++..++|.|.....+
T Consensus 182 ~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233667789999999754433
No 69
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.64 E-value=7.9e-07 Score=85.89 Aligned_cols=155 Identities=20% Similarity=0.250 Sum_probs=89.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh--
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR-- 80 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-- 80 (329)
.+-+.|+|++|+||||||+.+++.....|. .+. .. .....++ +.+... ..+.
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln---a~--~~~i~di-r~~i~~-----------------a~~~l~ 105 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN---AV--LAGVKDL-RAEVDR-----------------AKERLE 105 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh---hh--hhhhHHH-HHHHHH-----------------HHHHhh
Confidence 346789999999999999999987654431 111 00 0011111 111111 1111
Q ss_pred hcCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEe--CchhH--HH-hcCCCeEEEecCCChhhhHHHHhhhhc
Q 020206 81 LTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITA--RDKQA--LI-NCGVNKIYQIKELVHVDALKLLNQCAF 153 (329)
Q Consensus 81 ~~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilits--r~~~~--~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~ 153 (329)
..+++.+|+|||++ +....+.++..+. .+..+++++ .+... .. .......+.+++++.++...++.....
T Consensus 106 ~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 106 RHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHH
Confidence 12356799999995 4445555655442 344445433 33211 11 112345789999999999999987663
Q ss_pred C-----CCCCCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206 154 G-----RDHPDASYIELTHEAIKYAQGVPIALKILGRF 186 (329)
Q Consensus 154 ~-----~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 186 (329)
. ........++..+.|++.+.|+...+..+...
T Consensus 183 ~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~ 220 (725)
T PRK13341 183 DKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALEL 220 (725)
T ss_pred HHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1 01222345677899999999987665555443
No 70
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=2.7e-06 Score=77.30 Aligned_cols=100 Identities=8% Similarity=0.041 Sum_probs=65.8
Q ss_pred ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCc-hhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARD-KQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
.+-++|+|+++. .+....++..+.+.++...+|+++.+ ...... ......+++.++++++....+...+.... .
T Consensus 127 ~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~ 204 (397)
T PRK14955 127 RYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--I 204 (397)
T ss_pred CeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--C
Confidence 455899999963 34566777776655556666665543 333222 12335688999999999999988763221 2
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHh
Q 020206 160 ASYIELTHEAIKYAQGVPIALKILGR 185 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (329)
...++.++.|+..++|++.-+.....
T Consensus 205 ~i~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 205 SVDADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 24467799999999999976655443
No 71
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=3.8e-06 Score=79.56 Aligned_cols=101 Identities=10% Similarity=0.048 Sum_probs=68.8
Q ss_pred ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCc-hhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARD-KQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
++-++|+|+++. ......++..+.+.++.+.+|++|.. ...... ....+.+.+..++.++....+.+.+.... .
T Consensus 132 ~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg--i 209 (598)
T PRK09111 132 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG--V 209 (598)
T ss_pred CcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--C
Confidence 345899999953 45577777777665667777665533 332222 23456889999999999999988763222 1
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206 160 ASYIELTHEAIKYAQGVPIALKILGRF 186 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~~~~ 186 (329)
...++.+..|++.++|.+..+......
T Consensus 210 ~i~~eAl~lIa~~a~Gdlr~al~~Ldk 236 (598)
T PRK09111 210 EVEDEALALIARAAEGSVRDGLSLLDQ 236 (598)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 234567899999999999877655533
No 72
>PRK06620 hypothetical protein; Validated
Probab=98.62 E-value=6.8e-07 Score=73.94 Aligned_cols=140 Identities=11% Similarity=0.005 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+.+.|+|++|+|||+|++.+++... ..+.. ..... . . .. +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~------~~~~~----~--------------------~----~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-----AYIIK------DIFFN----E--------------------E----IL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-----CEEcc------hhhhc----h--------------------h----HH-h
Confidence 5689999999999999998766542 12211 00000 0 0 01 1
Q ss_pred ceEEEEEecCCChhh--HHHHhcccCCCCCCcEEEEEeCchhHH---Hh----cCCCeEEEecCCChhhhHHHHhhhhcC
Q 020206 84 KKVLIVFDDVNHPRQ--IEFLIGNLDWFASGSRILITARDKQAL---IN----CGVNKIYQIKELVHVDALKLLNQCAFG 154 (329)
Q Consensus 84 ~~~LlvlDdv~~~~~--~~~l~~~l~~~~~~~~ilitsr~~~~~---~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~ 154 (329)
..-++++||++..+. +-.+...+. ..|..+|+|++.++.. .. +...-.+++++++.++-..++.+....
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 224788999964332 222322222 3456788888865432 11 224457899999999988888877632
Q ss_pred CCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 155 RDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 155 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
.. -...+++++.|++.+.|.-..+..+...+
T Consensus 163 ~~--l~l~~ev~~~L~~~~~~d~r~l~~~l~~l 193 (214)
T PRK06620 163 SS--VTISRQIIDFLLVNLPREYSKIIEILENI 193 (214)
T ss_pred cC--CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 21 22446779999999988887776655554
No 73
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=8e-06 Score=73.71 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=93.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC--------CCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcch
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR--------FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGL 74 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 74 (329)
++.+.++|++|+|||++|..+++.+... +...+...+ ........+ +..+.......+
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~-i~~l~~~~~~~p---------- 104 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD---AASNNSVDD-IRNLIDQVRIPP---------- 104 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec---cccCCCHHH-HHHHHHHHhhcc----------
Confidence 3578899999999999999998876431 121111110 000111111 222222211110
Q ss_pred HHHHhhhcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhh
Q 020206 75 NFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQ 150 (329)
Q Consensus 75 ~~l~~~~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~ 150 (329)
..+++-++++|+++. ...+..++..+...+....+|+++... ..... ......++++++++++...++..
T Consensus 105 ------~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~ 178 (367)
T PRK14970 105 ------QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAG 178 (367)
T ss_pred ------ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHH
Confidence 112445899999853 344666665554434455566555332 22211 23445789999999999999987
Q ss_pred hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
.+..... ...++.+..|+..++|.+..+......+
T Consensus 179 ~~~~~g~--~i~~~al~~l~~~~~gdlr~~~~~lekl 213 (367)
T PRK14970 179 IAVKEGI--KFEDDALHIIAQKADGALRDALSIFDRV 213 (367)
T ss_pred HHHHcCC--CCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6633222 2345779999999999887655544433
No 74
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=5e-06 Score=78.33 Aligned_cols=102 Identities=9% Similarity=0.104 Sum_probs=66.3
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
++.-+||||+++. ......|+..+........+|++|.+. .+... ......+++++++.++....+...+....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-- 195 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-- 195 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC--
Confidence 3556999999954 355667777665444556666655543 33222 23345789999999999999987663222
Q ss_pred CCchHHHHHHHHHHhcCCch-HHHHHHhh
Q 020206 159 DASYIELTHEAIKYAQGVPI-ALKILGRF 186 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Pl-al~~~~~~ 186 (329)
....++.+..|++.++|.+. ++.++-..
T Consensus 196 i~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 196 VDYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12345678999999999874 55555433
No 75
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.60 E-value=2.9e-07 Score=74.98 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
.-+.+|||||+||||||.-+++.....|. +.+ ...-....++... +. .+ +
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s----g~~i~k~~dl~~i---------------------l~-~l-~ 100 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFK---ITS----GPAIEKAGDLAAI---------------------LT-NL-K 100 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE----CCC--SCHHHHHH---------------------HH-T---
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeE---ecc----chhhhhHHHHHHH---------------------HH-hc-C
Confidence 45899999999999999999998775542 222 1001112222221 11 12 2
Q ss_pred ceEEEEEecCC--ChhhHHHHhcccCCC--------CC----------CcEEE-EEeCchhHHHhcC--CCeEEEecCCC
Q 020206 84 KKVLIVFDDVN--HPRQIEFLIGNLDWF--------AS----------GSRIL-ITARDKQALINCG--VNKIYQIKELV 140 (329)
Q Consensus 84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~--------~~----------~~~il-itsr~~~~~~~~~--~~~~~~l~~l~ 140 (329)
++.+|++|+++ +...-+.+.+.+.+. ++ ...+| -|||.......+. ..-...++..+
T Consensus 101 ~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~ 180 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYS 180 (233)
T ss_dssp TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----T
T ss_pred CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCC
Confidence 34588889995 334444443332211 11 11222 3666543333222 33456799999
Q ss_pred hhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 141 HVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 141 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
.+|-.+++.+.+.. -.....++.+.+|+..+.|-|.--.-+.+..
T Consensus 181 ~~el~~Iv~r~a~~--l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 181 EEELAKIVKRSARI--LNIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp HHHHHHHHHHCCHC--TT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 99999999876522 2223556779999999999997554444443
No 76
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.60 E-value=1.7e-06 Score=83.09 Aligned_cols=217 Identities=14% Similarity=0.112 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC-----CC--ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-chH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR-----FE--GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLN 75 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~ 75 (329)
.++.|+|++|+|||+.++.+++.+.+. .+ .++++. +........++..|..++............ ...
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLe 857 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILD 857 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHH
Confidence 456799999999999999999876432 22 123443 222345666777777777443322121111 222
Q ss_pred HHHhhh-c--CceEEEEEecCCChh--hHHHHhcccCCC-CCCcEE--EEEeCchh----HHHhcC---CCeEEEecCCC
Q 020206 76 FQSKRL-T--RKKVLIVFDDVNHPR--QIEFLIGNLDWF-ASGSRI--LITARDKQ----ALINCG---VNKIYQIKELV 140 (329)
Q Consensus 76 ~l~~~~-~--~~~~LlvlDdv~~~~--~~~~l~~~l~~~-~~~~~i--litsr~~~----~~~~~~---~~~~~~l~~l~ 140 (329)
.+...+ . +...+||||+++... .-+.|...+.+. ..++++ |..+.... ...... ....+.+++++
T Consensus 858 rLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYT 937 (1164)
T PTZ00112 858 RLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYK 937 (1164)
T ss_pred HHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCC
Confidence 233222 1 234699999995321 111122111111 123433 33333221 111111 11246779999
Q ss_pred hhhhHHHHhhhhcCCCCCCCchHHHHHHHHH---HhcCCc-hHHHHHHhhhc--CC---CHHHHHHHHHhhccCChhhHH
Q 020206 141 HVDALKLLNQCAFGRDHPDASYIELTHEAIK---YAQGVP-IALKILGRFLF--RK---RKEVWENAISKLEMVPQMEIQ 211 (329)
Q Consensus 141 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~---~~~g~P-lal~~~~~~l~--~~---~~~~~~~~~~~l~~~~~~~~~ 211 (329)
.+|..+++..++... .....++++..+++ ...|.- .||.++-.... .. ...........+ ..
T Consensus 938 aEQL~dILk~RAe~A--~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAleei-------E~ 1008 (1164)
T PTZ00112 938 GDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQL-------FD 1008 (1164)
T ss_pred HHHHHHHHHHHHHhC--CCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHH-------Hh
Confidence 999999999988432 12233444555554 333433 33333322221 11 112222222111 12
Q ss_pred HHHHhhhcCCChhhHhHHHhhh
Q 020206 212 EVLKISYDGLDDKEKNIFLDIA 233 (329)
Q Consensus 212 ~~l~~~~~~L~~~~~~~l~~ls 233 (329)
..+...+..||.+.+-+|..+.
T Consensus 1009 srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 1009 SPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred hhHHHHHHcCCHHHHHHHHHHH
Confidence 2345567789988888776544
No 77
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.59 E-value=1e-06 Score=79.23 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
++-+.|+|++|+|||++|+.+++.....|-.+ . ..++..... ... .......+...-.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---~----------~~~l~~~~~----g~~-----~~~i~~~f~~a~~ 213 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---V----------GSELVRKYI----GEG-----ARLVREIFELAKE 213 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEec---c----------hHHHHHHhh----hHH-----HHHHHHHHHHHHh
Confidence 35689999999999999999999765432111 0 011111100 000 0001111222223
Q ss_pred CceEEEEEecCCCh-------------h---hHHHHhcccCCC--CCCcEEEEEeCchhHH-----HhcCCCeEEEecCC
Q 020206 83 RKKVLIVFDDVNHP-------------R---QIEFLIGNLDWF--ASGSRILITARDKQAL-----INCGVNKIYQIKEL 139 (329)
Q Consensus 83 ~~~~LlvlDdv~~~-------------~---~~~~l~~~l~~~--~~~~~ilitsr~~~~~-----~~~~~~~~~~l~~l 139 (329)
..+.+|++|+++.. . .+..++..+... ..+..+|.||...... ........+.++..
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 46789999998532 1 122333222211 2355677777654211 11123457889999
Q ss_pred ChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 020206 140 VHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP 177 (329)
Q Consensus 140 ~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (329)
+.++..+++.....+...... -....+++.+.|..
T Consensus 294 ~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 999999999877643332211 11677888887764
No 78
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=1.1e-05 Score=76.20 Aligned_cols=101 Identities=8% Similarity=0.007 Sum_probs=68.2
Q ss_pred CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
+++-++|+|+++ +......++..+...+....+|++|.+. ..... ....+.+++.+++.++....+...+....
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-- 195 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-- 195 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC--
Confidence 345589999995 3455777777776555666676666543 22222 23456789999999999999988763322
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILGR 185 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (329)
....++.+..|++.++|.+..+..+..
T Consensus 196 i~id~eAl~lLa~~s~GdlR~alslLd 222 (563)
T PRK06647 196 IKYEDEALKWIAYKSTGSVRDAYTLFD 222 (563)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 223457788899999999876655543
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.58 E-value=1.2e-06 Score=75.09 Aligned_cols=131 Identities=10% Similarity=0.098 Sum_probs=69.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCC--CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
..-+.++|++|+|||++|+.+++.+.... ....++. + ...++.. ..... ........+..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~----~----~~~~l~~----~~~g~-----~~~~~~~~~~~- 103 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE----V----ERADLVG----EYIGH-----TAQKTREVIKK- 103 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE----e----cHHHhhh----hhccc-----hHHHHHHHHHh-
Confidence 34678999999999999999998764321 1111111 0 0111111 10000 00001122221
Q ss_pred hcCceEEEEEecCCC----------hhhHHHHhcccCCCCCCcEEEEEeCchhH--HH----h--cCCCeEEEecCCChh
Q 020206 81 LTRKKVLIVFDDVNH----------PRQIEFLIGNLDWFASGSRILITARDKQA--LI----N--CGVNKIYQIKELVHV 142 (329)
Q Consensus 81 ~~~~~~LlvlDdv~~----------~~~~~~l~~~l~~~~~~~~ilitsr~~~~--~~----~--~~~~~~~~l~~l~~~ 142 (329)
. ...+|++|+++. .+.+..++..+........+++++..... .. . ......+.+++++.+
T Consensus 104 a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~ 181 (261)
T TIGR02881 104 A--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVE 181 (261)
T ss_pred c--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHH
Confidence 1 234899999953 23455565555443344455565543211 00 1 123356889999999
Q ss_pred hhHHHHhhhhc
Q 020206 143 DALKLLNQCAF 153 (329)
Q Consensus 143 e~~~ll~~~~~ 153 (329)
|..+++...+.
T Consensus 182 el~~Il~~~~~ 192 (261)
T TIGR02881 182 ELMEIAERMVK 192 (261)
T ss_pred HHHHHHHHHHH
Confidence 99999988773
No 80
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=9.8e-06 Score=75.39 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=68.8
Q ss_pred ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhH-HH-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQA-LI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~-~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
+.-++|+|+++. .+....++..+...++.+.+|++|.+... .. .......+++.+++.++....+...+.....
T Consensus 117 ~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-- 194 (535)
T PRK08451 117 RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-- 194 (535)
T ss_pred CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--
Confidence 445899999963 45567777777665667777777765421 11 1234568999999999999999877633221
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHH
Q 020206 160 ASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
...++.+..|++.++|.+.-+....
T Consensus 195 ~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 195 SYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 2345778999999999997666655
No 81
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=1.9e-05 Score=75.73 Aligned_cols=101 Identities=8% Similarity=0.068 Sum_probs=66.5
Q ss_pred CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCc-hhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARD-KQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
++.-++|+|+++ ..+....++..+...+....+|++|.. ..+... ....+.+.+.+++.++....+...+....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-- 194 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-- 194 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--
Confidence 345589999995 345677777776655556665555543 333322 34456899999999999999987652222
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILGR 185 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (329)
....++++..++..++|.+.-+..+..
T Consensus 195 I~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 195 ISYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 123346688999999998865554443
No 82
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=2.4e-05 Score=74.45 Aligned_cols=98 Identities=8% Similarity=0.067 Sum_probs=65.0
Q ss_pred ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCc-hhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARD-KQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
.+-++|+||++. ......|+..+...+....+|++|.+ ..+... ......+++.+++.++....+...+.... .
T Consensus 127 ~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i 204 (620)
T PRK14954 127 RYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG--I 204 (620)
T ss_pred CCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--C
Confidence 344889999954 34567777777655556666555543 333222 34567899999999999999887663221 1
Q ss_pred CchHHHHHHHHHHhcCCchHHHHH
Q 020206 160 ASYIELTHEAIKYAQGVPIALKIL 183 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~ 183 (329)
...++.++.|++.++|....+...
T Consensus 205 ~I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 205 QIDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHH
Confidence 134566899999999987755443
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.49 E-value=2.1e-06 Score=65.28 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
|.|+|++|+|||++|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 67999999999999999999974
No 84
>PRK08116 hypothetical protein; Validated
Probab=98.49 E-value=9.3e-07 Score=75.73 Aligned_cols=102 Identities=22% Similarity=0.309 Sum_probs=58.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+-+.|+|++|+|||.||..+++.+..+...++++. ..+++..+...+..... .....+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~~------~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSGK------EDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcccc------ccHHHHHHHhcC
Confidence 35889999999999999999998876644455544 34445555444322111 112223333444
Q ss_pred ceEEEEEecCC--Ch--hhHHHHhcccCC-CCCCcEEEEEeCch
Q 020206 84 KKVLIVFDDVN--HP--RQIEFLIGNLDW-FASGSRILITARDK 122 (329)
Q Consensus 84 ~~~LlvlDdv~--~~--~~~~~l~~~l~~-~~~~~~ilitsr~~ 122 (329)
.+ ||||||+. .. .....+...+.. ...+..+|+||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44 89999993 11 122223322221 12455688888754
No 85
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.48 E-value=3.1e-06 Score=75.56 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=97.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
...+.|+|+.|.|||.|+..+++......+...++. + ...++.......+... ..+.+++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~----~se~f~~~~v~a~~~~---------~~~~Fk~~y- 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----L----TSEDFTNDFVKALRDN---------EMEKFKEKY- 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----c----cHHHHHHHHHHHHHhh---------hHHHHHHhh-
Confidence 356899999999999999999998887777544443 2 2334444444443321 233344444
Q ss_pred CceEEEEEecCC----ChhhHHHHhcccCCC-CCCcEEEEEeCchhHHH---------hcCCCeEEEecCCChhhhHHHH
Q 020206 83 RKKVLIVFDDVN----HPRQIEFLIGNLDWF-ASGSRILITARDKQALI---------NCGVNKIYQIKELVHVDALKLL 148 (329)
Q Consensus 83 ~~~~LlvlDdv~----~~~~~~~l~~~l~~~-~~~~~ilitsr~~~~~~---------~~~~~~~~~l~~l~~~e~~~ll 148 (329)
.--++++||++ .....+.++..+... ..+..||+|++..+..- .+.....+.+.+++.+....++
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 22389999994 223344444444432 23448888886653221 1235578899999999999999
Q ss_pred hhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 149 NQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
++.+..... ...+++..-+++....+-..+.-+.
T Consensus 254 ~kka~~~~~--~i~~ev~~~la~~~~~nvReLegaL 287 (408)
T COG0593 254 RKKAEDRGI--EIPDEVLEFLAKRLDRNVRELEGAL 287 (408)
T ss_pred HHHHHhcCC--CCCHHHHHHHHHHhhccHHHHHHHH
Confidence 986622221 2334566667766666555444443
No 86
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=2.6e-05 Score=73.83 Aligned_cols=100 Identities=11% Similarity=0.030 Sum_probs=65.5
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
++.-++|+|+++. ......++..+...+....+|++|... .+... .+....+.+.+++.++....+...+.....
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi- 196 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI- 196 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-
Confidence 3456899999964 455777777766545565666555433 22222 234567889999999999999887632221
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
...++.+..|++.++|.+.......
T Consensus 197 -~i~~~al~~ia~~s~G~~R~al~~L 221 (559)
T PRK05563 197 -EYEDEALRLIARAAEGGMRDALSIL 221 (559)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1335668889999999887555444
No 87
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=1.4e-05 Score=75.85 Aligned_cols=97 Identities=8% Similarity=0.054 Sum_probs=63.8
Q ss_pred ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
+.-++|+|+++. ......|+..+.+.+....+|++|.+. .+... .+....+++.+++.++....+...+.... .
T Consensus 119 ~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg--i 196 (576)
T PRK14965 119 RYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG--I 196 (576)
T ss_pred CceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--C
Confidence 344899999953 455677777776555666666655443 33322 23456788999999999988887663222 1
Q ss_pred CchHHHHHHHHHHhcCCchHHHH
Q 020206 160 ASYIELTHEAIKYAQGVPIALKI 182 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~ 182 (329)
...++.+..|++.++|....+..
T Consensus 197 ~i~~~al~~la~~a~G~lr~al~ 219 (576)
T PRK14965 197 SISDAALALVARKGDGSMRDSLS 219 (576)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHH
Confidence 23456688999999998754433
No 88
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=2.5e-05 Score=74.52 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=66.4
Q ss_pred ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEe-CchhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITA-RDKQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilits-r~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
.+=++|+|+++. .+....|+..+...+....+|++| +...+... ......+++++++.++....+...+.....
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-- 198 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-- 198 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--
Confidence 344889999853 455777777776655666666555 33333332 245568999999999999999876632221
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHH
Q 020206 160 ASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
...++.+..|++.++|...-+....
T Consensus 199 ~i~~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 199 TAEPEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2334668999999999887665544
No 89
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=2.2e-05 Score=72.38 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=64.9
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
..+-++|+|+++. .+....++..+...+....+|++|.+. .+... ......+++.++++++....+...+....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-- 197 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-- 197 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence 3456899999853 344566666666545566666666433 22221 23456789999999999999887653221
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
....++.+..|+..++|.+.-+....
T Consensus 198 ~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 198 IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12345678999999999886544443
No 90
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=6e-05 Score=72.01 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=65.9
Q ss_pred ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
+.-++|+|+++. .+....++..+........+|++|.+. .+... ......+.+..++.++....+...+.... .
T Consensus 121 ~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~keg--i 198 (620)
T PRK14948 121 RWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKES--I 198 (620)
T ss_pred CceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhC--C
Confidence 445899999964 455777777776545566666555443 22222 23456788899999998888877653211 1
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206 160 ASYIELTHEAIKYAQGVPIALKILGRF 186 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~~~~ 186 (329)
...++.+..|++.++|.+..+..+...
T Consensus 199 ~is~~al~~La~~s~G~lr~A~~lLek 225 (620)
T PRK14948 199 EIEPEALTLVAQRSQGGLRDAESLLDQ 225 (620)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 133466889999999998766555443
No 91
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.44 E-value=9.1e-05 Score=66.18 Aligned_cols=106 Identities=13% Similarity=0.071 Sum_probs=68.4
Q ss_pred ceEEEEEecCCCh--------hhHHHHhcccCCCCCCcEEEEEeCchhHHH----hc--CCCeEEEecCCChhhhHHHHh
Q 020206 84 KKVLIVFDDVNHP--------RQIEFLIGNLDWFASGSRILITARDKQALI----NC--GVNKIYQIKELVHVDALKLLN 149 (329)
Q Consensus 84 ~~~LlvlDdv~~~--------~~~~~l~~~l~~~~~~~~ilitsr~~~~~~----~~--~~~~~~~l~~l~~~e~~~ll~ 149 (329)
.+-+||+||+... +.+.++...+.. .+-..||+.|.+..... .+ ...+.+.|...+++.|.+++.
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 4669999999321 112222222221 23446787776653222 22 355678899999999999999
Q ss_pred hhhcCCCCC--------------C----CchHHHHHHHHHHhcCCchHHHHHHhhhcCC
Q 020206 150 QCAFGRDHP--------------D----ASYIELTHEAIKYAQGVPIALKILGRFLFRK 190 (329)
Q Consensus 150 ~~~~~~~~~--------------~----~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~ 190 (329)
.++...... . .....-.+.+++..||=-.-|+.+++.++..
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 887432110 0 1234457888999999999999999999884
No 92
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.44 E-value=3.4e-05 Score=69.98 Aligned_cols=220 Identities=17% Similarity=0.099 Sum_probs=125.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCc
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRK 84 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (329)
+++|.||.++||||+++.+.+...+. .+++...........+.+..... ...-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~---------------------~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAY---------------------IELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHH---------------------HHhhccC
Confidence 89999999999999997777766554 45554221111111111111111 1111116
Q ss_pred eEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHh------cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 85 KVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALIN------CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 85 ~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~------~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
+..|+||.|+....|...+..+.+..+. .+++|+.+...... .+....+.+.||+..|-..+-.... ..
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~~ 169 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----EP 169 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----ch
Confidence 7899999999999998888887765655 78888876643322 1344678899999888776643100 00
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhhHH-HHHHhhhcCCC-hhhHhHHHhhh-cc
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQ-EVLKISYDGLD-DKEKNIFLDIA-CF 235 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~l~~~~~~L~-~~~~~~l~~ls-~~ 235 (329)
. .... .-.-.-.+||.|-++..--..-. ...+... .+. .+.+. ....+ ...++++..++ -.
T Consensus 170 ~-~~~~-~f~~Yl~~GGfP~~v~~~~~~~~------~~~~~~~-------~~~~Di~~~-~~~~~~~~~k~i~~~l~~~~ 233 (398)
T COG1373 170 S-KLEL-LFEKYLETGGFPESVKADLSEKK------LKEYLDT-------ILKRDIIER-GKIENADLMKRILRFLASNI 233 (398)
T ss_pred h-HHHH-HHHHHHHhCCCcHHHhCcchhhH------HHHHHHH-------HHHHHHHHH-cCcccHHHHHHHHHHHHhhc
Confidence 0 1111 22335567899986643221111 1111111 011 11111 11111 35566655555 55
Q ss_pred cCccChhHHHHHH-HhCCcchhhhHHHHhhcccee
Q 020206 236 LVGEDRDIVTKYL-NACEFFATSGIEVLVDKSLIT 269 (329)
Q Consensus 236 ~~~~~~~~l~~~~-~~~~~~~~~~l~~L~~~~Ll~ 269 (329)
+..++...++..+ +.+.......++.|.+..++.
T Consensus 234 g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~ 268 (398)
T COG1373 234 GSPISYSSLARELKGISKDTIRKYLSYLEDAFLLF 268 (398)
T ss_pred CCccCHHHHHHHHhccchHHHHHHHHHHHHhhheE
Confidence 5668999999998 455555667888888888775
No 93
>PRK08181 transposase; Validated
Probab=98.44 E-value=1.4e-06 Score=74.41 Aligned_cols=99 Identities=23% Similarity=0.218 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
.-+.|+|++|+|||.|+..+++....+...+.|+. ..+++..+...... . ......+.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~----------~~~L~~~l~~a~~~-~--------~~~~~l~~l~- 166 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR----------TTDLVQKLQVARRE-L--------QLESAIAKLD- 166 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee----------HHHHHHHHHHHHhC-C--------cHHHHHHHHh-
Confidence 46899999999999999999998766554555554 34455544333211 0 1111222222
Q ss_pred ceEEEEEecCC----ChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206 84 KKVLIVFDDVN----HPRQIEFLIGNLDWFASGSRILITARDK 122 (329)
Q Consensus 84 ~~~LlvlDdv~----~~~~~~~l~~~l~~~~~~~~ilitsr~~ 122 (329)
+.-||||||+. +......+...+.....+..+||||...
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 33499999993 2222233333332212234688888765
No 94
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.43 E-value=1.7e-05 Score=65.51 Aligned_cols=176 Identities=15% Similarity=0.099 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc----chHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI----GLNFQSK 79 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~l~~ 79 (329)
.++.|+|+-|+|||.+++.......++-..++++. ....+...+...+...+..... ...+. ....+..
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~--~~~~~~~e~~~~~L~a 124 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPK--VNVNAVLEQIDRELAA 124 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCcc--chhHHHHHHHHHHHHH
Confidence 48999999999999999955555443322222222 1233455666666666655222 11111 1222222
Q ss_pred h-hcCce-EEEEEecCCCh-----hhHHHHhcccCCCCCCcEEEEEeCch-------hHHHhcC--CCeEEEecCCChhh
Q 020206 80 R-LTRKK-VLIVFDDVNHP-----RQIEFLIGNLDWFASGSRILITARDK-------QALINCG--VNKIYQIKELVHVD 143 (329)
Q Consensus 80 ~-~~~~~-~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ilitsr~~-------~~~~~~~--~~~~~~l~~l~~~e 143 (329)
. .++++ +.+++|+.+.. +.++-|...-.+...-.+|+.....+ +...... ..-.|.++|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 2 23455 89999998432 22333333322222223455544433 1222222 22238899999999
Q ss_pred hHHHHhhhhcCCCC-CCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206 144 ALKLLNQCAFGRDH-PDASYIELTHEAIKYAQGVPIALKILGRF 186 (329)
Q Consensus 144 ~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 186 (329)
...+++.+..+... .+-...+.+..|+....|+|.+|..++..
T Consensus 205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999988855432 22335677889999999999999988743
No 95
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=1.9e-05 Score=69.02 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=63.7
Q ss_pred ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
+.-++|||+++ +.+....++..+.+-++++.+|++|.+. .++.. .+..+.+.+.+++.+++.+.+.... .+
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~~ 187 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----VS 187 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----CC
Confidence 44589999996 4566788888877766777777777654 33333 2345678899999999999997532 11
Q ss_pred CchHHHHHHHHHHhcCCchHHHHH
Q 020206 160 ASYIELTHEAIKYAQGVPIALKIL 183 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~ 183 (329)
...+..++..++|.|+....+
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 122667899999999855433
No 96
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.40 E-value=1.5e-05 Score=68.05 Aligned_cols=177 Identities=14% Similarity=0.074 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCC------ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE------GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ 77 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l 77 (329)
+.+.|+|++|+|||++++++....-..++ .++.+. ..+..+...++..|+..++................
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~ 137 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQV 137 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHH
Confidence 56889999999999999999976422221 123333 56678899999999999987765423332233333
Q ss_pred HhhhcC-ceEEEEEecCCCh-----hhHHHHhcccCCCCC---CcEEEEEeCchhHHHhc-----CCCeEEEecCCChh-
Q 020206 78 SKRLTR-KKVLIVFDDVNHP-----RQIEFLIGNLDWFAS---GSRILITARDKQALINC-----GVNKIYQIKELVHV- 142 (329)
Q Consensus 78 ~~~~~~-~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~---~~~ilitsr~~~~~~~~-----~~~~~~~l~~l~~~- 142 (329)
...++. +-=+||+|++++. ..-+.++..+...++ -+.|.+-|++-...... +....+.++....+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ 217 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDE 217 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCc
Confidence 333433 2338999999652 223333333322222 22344444433222111 22345566665443
Q ss_pred hhHHHHhhh---hcCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 143 DALKLLNQC---AFGRDHPDASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 143 e~~~ll~~~---~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
+...|+... ..-...+.-..++.+..|++.++|+.--+..+.
T Consensus 218 ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 218 EFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 444554432 211222223456788999999999987655443
No 97
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.40 E-value=7.2e-06 Score=74.28 Aligned_cols=150 Identities=15% Similarity=0.208 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
++-|.++|++|+|||++|+.+++.....| +.+. . .++.. ...... .......+.....
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~---i~v~-~---------~~l~~----~~~g~~-----~~~i~~~f~~a~~ 222 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATF---IRVV-G---------SELVQ----KFIGEG-----ARLVRELFELARE 222 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCE---EEee-h---------HHHhH----hhccch-----HHHHHHHHHHHHh
Confidence 45689999999999999999998765321 1111 1 11111 100000 0001111222223
Q ss_pred CceEEEEEecCCCh-------------hh---HHHHhcccCCC--CCCcEEEEEeCchhHHHh-----cCCCeEEEecCC
Q 020206 83 RKKVLIVFDDVNHP-------------RQ---IEFLIGNLDWF--ASGSRILITARDKQALIN-----CGVNKIYQIKEL 139 (329)
Q Consensus 83 ~~~~LlvlDdv~~~-------------~~---~~~l~~~l~~~--~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l 139 (329)
..+.+|+||+++.. +. +..++..+... ..+..||.||........ ......+.++..
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 46789999999532 11 22222222211 124456666654321111 123457899999
Q ss_pred ChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 020206 140 VHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP 177 (329)
Q Consensus 140 ~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (329)
+.++-.+++..+......... -....++..+.|.-
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~s 337 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLADD---VDLEELAELTEGAS 337 (389)
T ss_pred CHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCCC
Confidence 999999999877633222111 11667778887754
No 98
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.39 E-value=8.1e-06 Score=75.55 Aligned_cols=136 Identities=15% Similarity=0.263 Sum_probs=70.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCC-----CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF-----EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ 77 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l 77 (329)
++-+.++||+|+|||++|+.+++.+.... ....|+. +.. .+++. ....... ......+...
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~----v~~----~eLl~----kyvGete--~~ir~iF~~A 281 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN----IKG----PELLN----KYVGETE--RQIRLIFQRA 281 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe----ccc----hhhcc----cccchHH--HHHHHHHHHH
Confidence 35589999999999999999999875542 1222332 110 00100 0000000 0000011111
Q ss_pred Hhh-hcCceEEEEEecCCCh---------hh-----HHHHhcccCCCC--CCcEEEEEeCchhHHH-h----cCCCeEEE
Q 020206 78 SKR-LTRKKVLIVFDDVNHP---------RQ-----IEFLIGNLDWFA--SGSRILITARDKQALI-N----CGVNKIYQ 135 (329)
Q Consensus 78 ~~~-~~~~~~LlvlDdv~~~---------~~-----~~~l~~~l~~~~--~~~~ilitsr~~~~~~-~----~~~~~~~~ 135 (329)
... ..+++++|+||+++.. .+ +..++..+.... .+..+|.||....... . ......+.
T Consensus 282 r~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~ 361 (512)
T TIGR03689 282 REKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIR 361 (512)
T ss_pred HHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEE
Confidence 211 2347899999999521 11 223433332211 2334444554332211 1 13345689
Q ss_pred ecCCChhhhHHHHhhhh
Q 020206 136 IKELVHVDALKLLNQCA 152 (329)
Q Consensus 136 l~~l~~~e~~~ll~~~~ 152 (329)
++..+.++..++|..+.
T Consensus 362 ~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 362 IERPDAEAAADIFSKYL 378 (512)
T ss_pred eCCCCHHHHHHHHHHHh
Confidence 99999999999998876
No 99
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.39 E-value=1.1e-05 Score=69.88 Aligned_cols=128 Identities=12% Similarity=0.140 Sum_probs=69.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCC--CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
-+.++|++|+|||++|+.+++.+.... ....++. ++ ..++.. .+..... ......+.+ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~----~~~l~~----~~~g~~~-----~~~~~~~~~-a- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VT----RDDLVG----QYIGHTA-----PKTKEILKR-A- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ec----HHHHhH----hhcccch-----HHHHHHHHH-c-
Confidence 488999999999999999888764321 1112222 11 112211 1111100 001112222 1
Q ss_pred CceEEEEEecCCC-----------hhhHHHHhcccCCCCCCcEEEEEeCchh--HHHhc------CCCeEEEecCCChhh
Q 020206 83 RKKVLIVFDDVNH-----------PRQIEFLIGNLDWFASGSRILITARDKQ--ALINC------GVNKIYQIKELVHVD 143 (329)
Q Consensus 83 ~~~~LlvlDdv~~-----------~~~~~~l~~~l~~~~~~~~ilitsr~~~--~~~~~------~~~~~~~l~~l~~~e 143 (329)
.+-+|+||++.. .+....++..+.....+.++|+++.... ..... .....+.+++++.+|
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 235889999952 2224445555544344556666664321 11111 224578999999999
Q ss_pred hHHHHhhhh
Q 020206 144 ALKLLNQCA 152 (329)
Q Consensus 144 ~~~ll~~~~ 152 (329)
..+++....
T Consensus 200 l~~I~~~~l 208 (284)
T TIGR02880 200 LLVIAGLML 208 (284)
T ss_pred HHHHHHHHH
Confidence 999998876
No 100
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=8.5e-06 Score=70.33 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc-
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT- 82 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~- 82 (329)
+=|.+|||||+|||-||+.+|++.... |+...+ .++.....+++.. ....+-+..+
T Consensus 186 KGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvg------------SElVqKYiGEGaR------lVRelF~lAre 242 (406)
T COG1222 186 KGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVG------------SELVQKYIGEGAR------LVRELFELARE 242 (406)
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCce-----EEEecc------------HHHHHHHhccchH------HHHHHHHHHhh
Confidence 448899999999999999999875433 333111 1122222222221 2222222222
Q ss_pred CceEEEEEecCCC-------------hh---hHHHHhcccCCC--CCCcEEEEEeCchhHH-----HhcCCCeEEEecCC
Q 020206 83 RKKVLIVFDDVNH-------------PR---QIEFLIGNLDWF--ASGSRILITARDKQAL-----INCGVNKIYQIKEL 139 (329)
Q Consensus 83 ~~~~LlvlDdv~~-------------~~---~~~~l~~~l~~~--~~~~~ilitsr~~~~~-----~~~~~~~~~~l~~l 139 (329)
..+++|++|+++. .+ .+-.++..+... ..+.+||.+|.....+ +.....+.++++.-
T Consensus 243 kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplP 322 (406)
T COG1222 243 KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLP 322 (406)
T ss_pred cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCC
Confidence 4689999999842 11 133344443322 3355888877554322 22235567778755
Q ss_pred ChhhhHHHHhhhhcC-CCCCCCchHHHHHHHHHHhcCCchH
Q 020206 140 VHVDALKLLNQCAFG-RDHPDASYIELTHEAIKYAQGVPIA 179 (329)
Q Consensus 140 ~~~e~~~ll~~~~~~-~~~~~~~~~~~~~~i~~~~~g~Pla 179 (329)
+.+.=.++|.-+... ....+.. ++.|+..|.|..-|
T Consensus 323 d~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGA 359 (406)
T COG1222 323 DEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGA 359 (406)
T ss_pred CHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchH
Confidence 555555555544422 2222222 77788888886643
No 101
>CHL00181 cbbX CbbX; Provisional
Probab=98.36 E-value=3.3e-05 Score=66.89 Aligned_cols=129 Identities=11% Similarity=0.135 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC-C-CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR-F-EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.++|++|+|||++|+.+++.+... + ...-|+. + +..++... ...... ......+.. .
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v----~~~~l~~~----~~g~~~-----~~~~~~l~~-a- 121 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----V----TRDDLVGQ----YIGHTA-----PKTKEVLKK-A- 121 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----e----cHHHHHHH----Hhccch-----HHHHHHHHH-c-
Confidence 47899999999999999999875432 1 1111222 1 11122211 111100 001111222 2
Q ss_pred CceEEEEEecCCC-----------hhhHHHHhcccCCCCCCcEEEEEeCchhHH--------HhcCCCeEEEecCCChhh
Q 020206 83 RKKVLIVFDDVNH-----------PRQIEFLIGNLDWFASGSRILITARDKQAL--------INCGVNKIYQIKELVHVD 143 (329)
Q Consensus 83 ~~~~LlvlDdv~~-----------~~~~~~l~~~l~~~~~~~~ilitsr~~~~~--------~~~~~~~~~~l~~l~~~e 143 (329)
..-+|+||+++. .+....++..+.....+..||+++...... ........+.+++++.+|
T Consensus 122 -~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 122 -MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred -cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 234999999953 233444545444434556676776543211 111344578999999999
Q ss_pred hHHHHhhhhc
Q 020206 144 ALKLLNQCAF 153 (329)
Q Consensus 144 ~~~ll~~~~~ 153 (329)
..+++...+.
T Consensus 201 l~~I~~~~l~ 210 (287)
T CHL00181 201 LLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHH
Confidence 9999988773
No 102
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.36 E-value=1.5e-05 Score=70.41 Aligned_cols=151 Identities=14% Similarity=0.171 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
.++.++|++|+|||+++..+++..... ...+. ... .. .+..+..+..+..... ...
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~----~~~-~~-~~~i~~~l~~~~~~~~---------------~~~ 99 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN----GSD-CR-IDFVRNRLTRFASTVS---------------LTG 99 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec----cCc-cc-HHHHHHHHHHHHHhhc---------------ccC
Confidence 466779999999999999998876322 22222 111 11 1122221111111000 112
Q ss_pred ceEEEEEecCCCh---hhHHHHhcccCCCCCCcEEEEEeCchhHH-Hh-cCCCeEEEecCCChhhhHHHHhhhhcC----
Q 020206 84 KKVLIVFDDVNHP---RQIEFLIGNLDWFASGSRILITARDKQAL-IN-CGVNKIYQIKELVHVDALKLLNQCAFG---- 154 (329)
Q Consensus 84 ~~~LlvlDdv~~~---~~~~~l~~~l~~~~~~~~ilitsr~~~~~-~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~---- 154 (329)
.+-++|+|+++.. +....+...+.....++.+|+|+...... .. .+....+.++..+.++..+++......
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~ 179 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGI 179 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 3458999999643 22233333333335677888888654211 11 123346777778888777665432100
Q ss_pred -CCCCCCchHHHHHHHHHHhcCCch
Q 020206 155 -RDHPDASYIELTHEAIKYAQGVPI 178 (329)
Q Consensus 155 -~~~~~~~~~~~~~~i~~~~~g~Pl 178 (329)
........++++..+++...|.-.
T Consensus 180 ~~~~~~~i~~~al~~l~~~~~~d~r 204 (316)
T PHA02544 180 LEAEGVEVDMKVLAALVKKNFPDFR 204 (316)
T ss_pred HHhcCCCCCHHHHHHHHHhcCCCHH
Confidence 011112234456667766666543
No 103
>PRK12377 putative replication protein; Provisional
Probab=98.35 E-value=4e-06 Score=70.67 Aligned_cols=100 Identities=18% Similarity=0.141 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
.-+.|+|++|+|||+||..+++.+..+...+.++. ..+++..+-....... ....+.+.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~----------~~~l~~~l~~~~~~~~--------~~~~~l~~l~- 162 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT----------VPDVMSRLHESYDNGQ--------SGEKFLQELC- 162 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE----------HHHHHHHHHHHHhccc--------hHHHHHHHhc-
Confidence 46899999999999999999998876655566655 3345554444332110 1112222232
Q ss_pred ceEEEEEecCC----ChhhHHHHhcccCCC-CCCcEEEEEeCch
Q 020206 84 KKVLIVFDDVN----HPRQIEFLIGNLDWF-ASGSRILITARDK 122 (329)
Q Consensus 84 ~~~LlvlDdv~----~~~~~~~l~~~l~~~-~~~~~ilitsr~~ 122 (329)
+.-||||||+. +....+.+...+... .+...+||||.-.
T Consensus 163 ~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 163 KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 34499999992 122223333332211 2234577777643
No 104
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=3.3e-05 Score=67.68 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=62.9
Q ss_pred ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
+.=++|+|+++ +.+....++..+.+-+++..+|++|.+. .+++. .+..+.+.+.+++.+++.+.+.... . ..
T Consensus 107 ~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~-~--~~- 182 (325)
T PRK06871 107 GNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQS-S--AE- 182 (325)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHh-c--cC-
Confidence 44588899996 4567888888888777777777777665 33333 2345789999999999999998764 1 11
Q ss_pred CchHHHHHHHHHHhcCCch
Q 020206 160 ASYIELTHEAIKYAQGVPI 178 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Pl 178 (329)
...+..+...++|.|.
T Consensus 183 ---~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 183 ---ISEILTALRINYGRPL 198 (325)
T ss_pred ---hHHHHHHHHHcCCCHH
Confidence 1126667889999996
No 105
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.33 E-value=9.3e-07 Score=70.92 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..-+.++|++|+|||.||..+++....+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 456899999999999999999998776555566665
No 106
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.33 E-value=4.3e-05 Score=64.73 Aligned_cols=169 Identities=16% Similarity=0.104 Sum_probs=93.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc--CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISR--RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSK 79 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~ 79 (329)
+.+...+|||+|.|||+-|..++..+-. -|+.++.-.+............=........... .
T Consensus 56 ~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~---------------~ 120 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLL---------------K 120 (346)
T ss_pred CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhcc---------------c
Confidence 5688999999999999999999987533 2333333111111111000000000000000000 0
Q ss_pred hhcC---ce-EEEEEecCCCh--hhHHHHhcccCCCCCCcEEE-EEeCchhHHH-hcCCCeEEEecCCChhhhHHHHhhh
Q 020206 80 RLTR---KK-VLIVFDDVNHP--RQIEFLIGNLDWFASGSRIL-ITARDKQALI-NCGVNKIYQIKELVHVDALKLLNQC 151 (329)
Q Consensus 80 ~~~~---~~-~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~il-itsr~~~~~~-~~~~~~~~~l~~l~~~e~~~ll~~~ 151 (329)
...+ .+ -+||||+++.. +.+..+...+.......+++ ||+--..+.. .....+.+..++|..+....-++..
T Consensus 121 ~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~I 200 (346)
T KOG0989|consen 121 RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKI 200 (346)
T ss_pred cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHH
Confidence 0111 12 38999999643 44666655555445555554 4443332111 1233457889999999999999888
Q ss_pred hcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 152 AFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 152 ~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
+..... ...+++.+.|+..++|--.--..+...+
T Consensus 201 a~~E~v--~~d~~al~~I~~~S~GdLR~Ait~Lqsl 234 (346)
T KOG0989|consen 201 ASKEGV--DIDDDALKLIAKISDGDLRRAITTLQSL 234 (346)
T ss_pred HHHhCC--CCCHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 733332 2446779999999999766544444444
No 107
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.30 E-value=8.5e-06 Score=73.63 Aligned_cols=149 Identities=13% Similarity=0.203 Sum_probs=79.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
++-+.++|++|+|||+||+.+++.....| +.+. . .++.. ...... .......+.....
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~-~---------s~l~~----k~~ge~-----~~~lr~lf~~A~~ 236 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV-G---------SEFVQ----KYLGEG-----PRMVRDVFRLARE 236 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-h---------HHHHH----Hhcchh-----HHHHHHHHHHHHh
Confidence 46789999999999999999998754322 1111 0 01111 110000 0001122222334
Q ss_pred CceEEEEEecCCCh------------h----hHHHHhcccCCC--CCCcEEEEEeCchhHHHh-----cCCCeEEEecCC
Q 020206 83 RKKVLIVFDDVNHP------------R----QIEFLIGNLDWF--ASGSRILITARDKQALIN-----CGVNKIYQIKEL 139 (329)
Q Consensus 83 ~~~~LlvlDdv~~~------------~----~~~~l~~~l~~~--~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l 139 (329)
..+++|++|+++.. . .+..++..+... ..+..+|+||........ ......+.++..
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 57899999997421 1 122333333211 234567777765432211 134457888888
Q ss_pred ChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc
Q 020206 140 VHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP 177 (329)
Q Consensus 140 ~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 177 (329)
+.++-..+|+....... .++.. ...++..+.|..
T Consensus 317 ~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 317 DRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 88888888876653221 11212 666777777654
No 108
>CHL00176 ftsH cell division protein; Validated
Probab=98.30 E-value=2.7e-05 Score=74.41 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=85.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
++-|.++||+|+|||+||+.++...... ++. ++ ..++... ..... .......+.....
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is----~s~f~~~----~~g~~-----~~~vr~lF~~A~~ 273 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----IS----GSEFVEM----FVGVG-----AARVRDLFKKAKE 273 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----cc----HHHHHHH----hhhhh-----HHHHHHHHHHHhc
Confidence 3468999999999999999998875321 221 10 1111110 00000 0012233444445
Q ss_pred CceEEEEEecCCCh----------------hhHHHHhcccCCC--CCCcEEEEEeCchhHHHh-----cCCCeEEEecCC
Q 020206 83 RKKVLIVFDDVNHP----------------RQIEFLIGNLDWF--ASGSRILITARDKQALIN-----CGVNKIYQIKEL 139 (329)
Q Consensus 83 ~~~~LlvlDdv~~~----------------~~~~~l~~~l~~~--~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l 139 (329)
..+++|+|||++.. ..+..++..+... ..+..+|.+|........ ......+.++..
T Consensus 274 ~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lP 353 (638)
T CHL00176 274 NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLP 353 (638)
T ss_pred CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCC
Confidence 67899999999432 1133333332211 224445555554322211 124467889999
Q ss_pred ChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcC-CchHHHHHH
Q 020206 140 VHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILG 184 (329)
Q Consensus 140 ~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~ 184 (329)
+.++-.++++..+.... .........+++.+.| .+.-|..++
T Consensus 354 d~~~R~~IL~~~l~~~~---~~~d~~l~~lA~~t~G~sgaDL~~lv 396 (638)
T CHL00176 354 DREGRLDILKVHARNKK---LSPDVSLELIARRTPGFSGADLANLL 396 (638)
T ss_pred CHHHHHHHHHHHHhhcc---cchhHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999988763311 1223347778888887 555555544
No 109
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.29 E-value=1.9e-05 Score=66.18 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=88.6
Q ss_pred EeCchhHHHhc--CCCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHH
Q 020206 118 TARDKQALINC--GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVW 195 (329)
Q Consensus 118 tsr~~~~~~~~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~ 195 (329)
|||.......+ +.....+++-.+.+|..+++.+.+.- -+. ...++.+.+|++...|-|.--.-+.+..+. +
T Consensus 158 TTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~i-~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD-----f 230 (332)
T COG2255 158 TTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LGI-EIDEEAALEIARRSRGTPRIANRLLRRVRD-----F 230 (332)
T ss_pred ccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hCC-CCChHHHHHHHHhccCCcHHHHHHHHHHHH-----H
Confidence 67654222211 34456788889999999999876621 111 233456899999999999643333332221 1
Q ss_pred HHHHHh--hccCChhhHHHHHHhhhcCCChhhHhHHHhhh-cc-cCccChhHHHHHHHhCCcchhhhHH-HHhhccceee
Q 020206 196 ENAISK--LEMVPQMEIQEVLKISYDGLDDKEKNIFLDIA-CF-LVGEDRDIVTKYLNACEFFATSGIE-VLVDKSLITI 270 (329)
Q Consensus 196 ~~~~~~--l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls-~~-~~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Ll~~ 270 (329)
...... +...........+...=..|+...++.+..+. -| .+++..+.++..++.+....++.++ -|.+.|+++.
T Consensus 231 a~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~R 310 (332)
T COG2255 231 AQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQR 310 (332)
T ss_pred HHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchhhh
Confidence 111100 00111122233344444466777777776665 33 3557888888877665555555555 4899999998
Q ss_pred ecCCce
Q 020206 271 SEYNKI 276 (329)
Q Consensus 271 ~~~~~~ 276 (329)
...|+.
T Consensus 311 TpRGR~ 316 (332)
T COG2255 311 TPRGRI 316 (332)
T ss_pred CCCcce
Confidence 888864
No 110
>PRK06526 transposase; Provisional
Probab=98.29 E-value=2.3e-06 Score=72.63 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
.+-+.|+|++|+|||+||..++.........+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 4568999999999999999999876654333444
No 111
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=0.00018 Score=63.63 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=61.5
Q ss_pred ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCc-hhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARD-KQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
+.=++|+|+++ +.+....++..+.+-+++..+|++|.+ ...++. .+..+.+.+.+++.++..+.+.... .+.
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~~ 207 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VAD 207 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CCh
Confidence 34488889985 567788888888776777766665555 444433 3455789999999999999997652 111
Q ss_pred CchHHHHHHHHHHhcCCchHHHHH
Q 020206 160 ASYIELTHEAIKYAQGVPIALKIL 183 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~ 183 (329)
...+...++|.|.....+
T Consensus 208 ------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 208 ------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ------HHHHHHHcCCCHHHHHHH
Confidence 233577889999744433
No 112
>PRK09183 transposase/IS protein; Provisional
Probab=98.29 E-value=4.9e-06 Score=71.00 Aligned_cols=34 Identities=29% Similarity=0.223 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
..+.|+|++|+|||+|+..++.........+.++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999999988755443334443
No 113
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=8.4e-05 Score=65.83 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=48.4
Q ss_pred ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhh
Q 020206 84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQC 151 (329)
Q Consensus 84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~ 151 (329)
.+-++|+|+++ +.+....++..+.+.+++..+|++|.+.. +... .+....+++.+++.++..+.+...
T Consensus 110 ~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 110 NKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 44589999985 44567778888877677777777776543 2222 245578999999999998888654
No 114
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=0.00021 Score=62.66 Aligned_cols=173 Identities=13% Similarity=0.056 Sum_probs=95.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc---------------CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCC-C
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR---------------RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGN-M 66 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 66 (329)
++...++|+.|+||+++|..+++.+-. .++...|+.............+. +...+.... .
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~----~~~~~~~~~~~ 101 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASE----AEEAGLKRKAP 101 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhh----hhhcccccccc
Confidence 467899999999999999999987522 23444554311000000000000 000000000 0
Q ss_pred CCCCCcchHHHHhhh-----cCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEec
Q 020206 67 NKFPNIGLNFQSKRL-----TRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIK 137 (329)
Q Consensus 67 ~~~~~~~~~~l~~~~-----~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~ 137 (329)
..+.-..+..+.+.+ .+.+-++|+|+++ +......++..+.+.+ ...+|++|.+. ..... .+..+.+++.
T Consensus 102 ~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~ 180 (314)
T PRK07399 102 PQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFY 180 (314)
T ss_pred ccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecC
Confidence 011100112222222 2345589999985 4456777777776655 55555555443 33332 2455789999
Q ss_pred CCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206 138 ELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 185 (329)
Q Consensus 138 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (329)
+++.++..+.+...... .... .....++..++|.|........
T Consensus 181 ~l~~~~~~~~L~~~~~~-~~~~----~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 181 RLSDEQLEQVLKRLGDE-EILN----INFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred CCCHHHHHHHHHHhhcc-ccch----hHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999876521 1111 1146789999999976655443
No 115
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=4.2e-05 Score=67.64 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=62.9
Q ss_pred CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
+..=++|+|+++ +.+....++..+.+-+++..+|++|.+. .++.. .+..+.+.+.+++.+++.+.+.... + .+
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~--~~ 183 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T--MS 183 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C--CC
Confidence 344589999885 5667888888888766777777666654 34433 3445678899999999999886542 1 11
Q ss_pred CCchHHHHHHHHHHhcCCchH
Q 020206 159 DASYIELTHEAIKYAQGVPIA 179 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Pla 179 (329)
++.+..++..++|.|..
T Consensus 184 ----~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 184 ----QDALLAALRLSAGAPGA 200 (334)
T ss_pred ----HHHHHHHHHHcCCCHHH
Confidence 22367789999999963
No 116
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.24 E-value=5.7e-06 Score=63.36 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+.+.|+|++|+||||+++.++..+......++++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 467899999999999999999998776543344443
No 117
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.23 E-value=8.1e-06 Score=75.52 Aligned_cols=153 Identities=14% Similarity=0.060 Sum_probs=79.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
++-|.++||+|+|||.+|+.++....-. ++..+... +.. ...+. ........+...-.
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~----~~~l~~~~---------l~~----~~vGe-----se~~l~~~f~~A~~ 316 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLP----LLRLDVGK---------LFG----GIVGE-----SESRMRQMIRIAEA 316 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCC----EEEEEhHH---------hcc----cccCh-----HHHHHHHHHHHHHh
Confidence 3568999999999999999999876432 12211111 000 00000 00001112222223
Q ss_pred CceEEEEEecCCCh----------h----hHHHHhcccCCCCCCcEEEEEeCchhHH-----HhcCCCeEEEecCCChhh
Q 020206 83 RKKVLIVFDDVNHP----------R----QIEFLIGNLDWFASGSRILITARDKQAL-----INCGVNKIYQIKELVHVD 143 (329)
Q Consensus 83 ~~~~LlvlDdv~~~----------~----~~~~l~~~l~~~~~~~~ilitsr~~~~~-----~~~~~~~~~~l~~l~~~e 143 (329)
..+++|++|+++.. . .+..++..+.....+..+|.||...... +.......+.++..+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 46899999998421 0 1222333332222333445566544221 112345678888889888
Q ss_pred hHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch
Q 020206 144 ALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI 178 (329)
Q Consensus 144 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 178 (329)
-.++|+.+..... +........+.+++.+.|..-
T Consensus 397 R~~Il~~~l~~~~-~~~~~~~dl~~La~~T~GfSG 430 (489)
T CHL00195 397 REKIFKIHLQKFR-PKSWKKYDIKKLSKLSNKFSG 430 (489)
T ss_pred HHHHHHHHHhhcC-CCcccccCHHHHHhhcCCCCH
Confidence 8888887763321 111111226777777777653
No 118
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=0.00021 Score=62.59 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=63.4
Q ss_pred ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
..=++|+|+++ +.+....++..+.+-+++..+|++|.+. ..++. .+..+.+.+.+++.+++.+.+.... .+
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~~ 182 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-----IT 182 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC-----Cc
Confidence 34488999985 4567888888888767777777666654 33333 3455688999999999999997542 11
Q ss_pred CchHHHHHHHHHHhcCCchHHHHH
Q 020206 160 ASYIELTHEAIKYAQGVPIALKIL 183 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~ 183 (329)
. ...+...++|.|+....+
T Consensus 183 ~-----~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 V-----PAYALKLNMGSPLKTLAM 201 (319)
T ss_pred h-----HHHHHHHcCCCHHHHHHH
Confidence 1 346789999999865444
No 119
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.23 E-value=2.6e-06 Score=71.89 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc-CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCC-CCCCc-----chH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR-RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMN-KFPNI-----GLN 75 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~-----~~~ 75 (329)
...+.|.|++|+|||||++.+++.... +|+..+|+...++ ....+.++++.+...+....... ..... ...
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999997654 5777878773222 12467788887733322221110 00000 111
Q ss_pred HHHh-hhcCceEEEEEecCCC
Q 020206 76 FQSK-RLTRKKVLIVFDDVNH 95 (329)
Q Consensus 76 ~l~~-~~~~~~~LlvlDdv~~ 95 (329)
.... ...++++++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 1111 1347899999999943
No 120
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.22 E-value=1.7e-06 Score=70.06 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+.+.|+|++|+|||+|++.+...+...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46889999999999999999999987766
No 121
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.18 E-value=4.1e-05 Score=75.14 Aligned_cols=150 Identities=14% Similarity=0.083 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhhcC----ChHHHHHHHHHHHhcCCCCCCCCCcc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETG----KLADLRKELLSTLLNDGNMNKFPNIG 73 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~ 73 (329)
.-+.++|++|+|||++|+.+++++.... ...+|..+........ .+..- .
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~--------------------l 263 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEER--------------------L 263 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHH--------------------H
Confidence 4578999999999999999999875431 2334443221111100 01111 1
Q ss_pred hHHHHhhhcCceEEEEEecCCCh-----------hhHHHHhcccCCCCCCcEEEEEeCchhHH------Hh-cCCCeEEE
Q 020206 74 LNFQSKRLTRKKVLIVFDDVNHP-----------RQIEFLIGNLDWFASGSRILITARDKQAL------IN-CGVNKIYQ 135 (329)
Q Consensus 74 ~~~l~~~~~~~~~LlvlDdv~~~-----------~~~~~l~~~l~~~~~~~~ilitsr~~~~~------~~-~~~~~~~~ 135 (329)
...+.+.....+++|++|+++.. +....+.+.+. .....+|-+|..+... .. .+..+.+.
T Consensus 264 ~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~ 341 (731)
T TIGR02639 264 KAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKID 341 (731)
T ss_pred HHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEE
Confidence 11111111235789999998421 11222333332 2233445444432111 01 12345789
Q ss_pred ecCCChhhhHHHHhhhhcC--CCCCCCchHHHHHHHHHHhcC
Q 020206 136 IKELVHVDALKLLNQCAFG--RDHPDASYIELTHEAIKYAQG 175 (329)
Q Consensus 136 l~~l~~~e~~~ll~~~~~~--~~~~~~~~~~~~~~i~~~~~g 175 (329)
+++++.++..++++..... ........+++...+++.+..
T Consensus 342 v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r 383 (731)
T TIGR02639 342 VGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR 383 (731)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc
Confidence 9999999999999864411 111223445556666666643
No 122
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.17 E-value=5.6e-05 Score=74.96 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhh----cCChHHHHHHHHHHHhcCCCCCCCCCcc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEE----TGKLADLRKELLSTLLNDGNMNKFPNIG 73 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 73 (329)
.-++++|++|+|||++|+.+++++.... ...+|..+.+.... ...+..-++.++..
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e-------------- 274 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDE-------------- 274 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHH--------------
Confidence 3467999999999999999999875432 12334332222211 01111111111111
Q ss_pred hHHHHhhhcCceEEEEEecCCCh---------hhHH-HHhcccCCCCCCcEEEEEeCchhHHH-------hcCCCeEEEe
Q 020206 74 LNFQSKRLTRKKVLIVFDDVNHP---------RQIE-FLIGNLDWFASGSRILITARDKQALI-------NCGVNKIYQI 136 (329)
Q Consensus 74 ~~~l~~~~~~~~~LlvlDdv~~~---------~~~~-~l~~~l~~~~~~~~ilitsr~~~~~~-------~~~~~~~~~l 136 (329)
..+ .+.+++|++|+++.. .+.. .+.+.+. ....++|-+|....... ..+..+.+.+
T Consensus 275 ---~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v 347 (852)
T TIGR03345 275 ---VKA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKV 347 (852)
T ss_pred ---HHh--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEe
Confidence 111 246789999998422 1111 2333332 22345555555421110 1134468999
Q ss_pred cCCChhhhHHHHhhhhcC--CCCCCCchHHHHHHHHHHhcCCch
Q 020206 137 KELVHVDALKLLNQCAFG--RDHPDASYIELTHEAIKYAQGVPI 178 (329)
Q Consensus 137 ~~l~~~e~~~ll~~~~~~--~~~~~~~~~~~~~~i~~~~~g~Pl 178 (329)
++++.++..++++..... ........+++...+++.+.+++-
T Consensus 348 ~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 348 EEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred CCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 999999999997544311 111223456667777777776543
No 123
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.17 E-value=1.1e-05 Score=68.45 Aligned_cols=71 Identities=24% Similarity=0.241 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
.-+.++|++|+|||.||..+++.+..+.-.+.++. ..+++..+....... . ....+.+.+..
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~----------~~el~~~Lk~~~~~~-~-------~~~~l~~~l~~ 167 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT----------APDLLSKLKAAFDEG-R-------LEEKLLRELKK 167 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcC-c-------hHHHHHHHhhc
Confidence 35789999999999999999999884434455544 556666665555431 1 12223332332
Q ss_pred ceEEEEEecC
Q 020206 84 KKVLIVFDDV 93 (329)
Q Consensus 84 ~~~LlvlDdv 93 (329)
- =||||||+
T Consensus 168 ~-dlLIiDDl 176 (254)
T COG1484 168 V-DLLIIDDI 176 (254)
T ss_pred C-CEEEEecc
Confidence 2 39999999
No 124
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.17 E-value=1.6e-05 Score=66.94 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=45.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
..+.++|++|+|||+|+..+++.+......++++. ..++...+-..+.... .....+.+.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it----------~~~l~~~l~~~~~~~~-------~~~~~~l~~l~- 161 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT----------VADIMSAMKDTFSNSE-------TSEEQLLNDLS- 161 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----------HHHHHHHHHHHHhhcc-------ccHHHHHHHhc-
Confidence 46899999999999999999998876655555553 3444444433332110 11222333343
Q ss_pred ceEEEEEecCC
Q 020206 84 KKVLIVFDDVN 94 (329)
Q Consensus 84 ~~~LlvlDdv~ 94 (329)
+.-+|||||+.
T Consensus 162 ~~dlLvIDDig 172 (244)
T PRK07952 162 NVDLLVIDEIG 172 (244)
T ss_pred cCCEEEEeCCC
Confidence 33388899993
No 125
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.16 E-value=1.7e-05 Score=69.16 Aligned_cols=100 Identities=15% Similarity=0.242 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+-+.|+|++|+|||.|+..+++.+..+...+.++. ..+++..+-...... ......+.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~----------~~~l~~~lk~~~~~~---------~~~~~l~~l~ 216 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH----------FPEFIRELKNSISDG---------SVKEKIDAVK 216 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE----------HHHHHHHHHHHHhcC---------cHHHHHHHhc
Confidence 356889999999999999999998876555566655 234444444443211 1112222333
Q ss_pred CceEEEEEecCC--ChhhHH--HHhcccC-CC-CCCcEEEEEeCch
Q 020206 83 RKKVLIVFDDVN--HPRQIE--FLIGNLD-WF-ASGSRILITARDK 122 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~--~l~~~l~-~~-~~~~~ilitsr~~ 122 (329)
+.-||||||+. ....|. .++..+. .. ..+..+|+||.-.
T Consensus 217 -~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 217 -EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred -CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 33499999993 222221 2333321 11 2355677777643
No 126
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00017 Score=67.74 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=87.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
...|.|.|+.|+|||+|++.++..+.......+-+.++..... ..+.++...+ .+.+...+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~-~~~e~iQk~l-----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDG-SSLEKIQKFL-----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccc-hhHHHHHHHH-----------------HHHHHHHHh
Confidence 3568999999999999999999988755433333332222222 2244444333 222344455
Q ss_pred CceEEEEEecCCCh---------------hhHHHHhccc-CC-CCCCcE--EEEEeCchhHHHh-c----CCCeEEEecC
Q 020206 83 RKKVLIVFDDVNHP---------------RQIEFLIGNL-DW-FASGSR--ILITARDKQALIN-C----GVNKIYQIKE 138 (329)
Q Consensus 83 ~~~~LlvlDdv~~~---------------~~~~~l~~~l-~~-~~~~~~--ilitsr~~~~~~~-~----~~~~~~~l~~ 138 (329)
-.+-+|||||++.. ..+..++..+ .. ...+.+ +|.|......... + -......|++
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 67889999999321 1122222111 10 122333 3444443322111 1 1234567888
Q ss_pred CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCC-chHHHHHH
Q 020206 139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKILG 184 (329)
Q Consensus 139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 184 (329)
+...+=.+++........ .+ ...+.++.+..+|+|. |.-+.++.
T Consensus 573 p~~~~R~~IL~~~~s~~~-~~-~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNL-SD-ITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred cchhHHHHHHHHHHHhhh-hh-hhhHHHHHHHHhcCCccchhHHHHH
Confidence 887777777766552222 22 2234466688999884 55565554
No 127
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.15 E-value=1.3e-05 Score=70.51 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.-+.++|++|+|||.|+..+++.+.++...++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56899999999999999999998876655666665
No 128
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.14 E-value=7.4e-05 Score=65.60 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=79.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhh--cCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE--TGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSK 79 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~ 79 (329)
-++.+.||||+|+|||.+|+.++....-. +...+..++.. ....+..++++.... .+
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~----~i~vsa~eL~sk~vGEsEk~IR~~F~~A-----------------~~ 205 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIE----PIVMSAGELESENAGEPGKLIRQRYREA-----------------AD 205 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCC----eEEEEHHHhhcCcCCcHHHHHHHHHHHH-----------------HH
Confidence 35788999999999999999999986543 22222222211 122333333332221 11
Q ss_pred h--hcCceEEEEEecCCC-------h-----hhH--HHHhcccC--------------CCCCCcEEEEEeCchhHHHh--
Q 020206 80 R--LTRKKVLIVFDDVNH-------P-----RQI--EFLIGNLD--------------WFASGSRILITARDKQALIN-- 127 (329)
Q Consensus 80 ~--~~~~~~LlvlDdv~~-------~-----~~~--~~l~~~l~--------------~~~~~~~ilitsr~~~~~~~-- 127 (329)
. -+.++++|+||+++. . ..+ ..|+..+. ...++..||.||.....+..
T Consensus 206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL 285 (413)
T PLN00020 206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL 285 (413)
T ss_pred HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence 1 245799999999842 0 111 23332211 11234566777765532221
Q ss_pred cC---CCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch
Q 020206 128 CG---VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI 178 (329)
Q Consensus 128 ~~---~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 178 (329)
.+ .... +...+.++=.++++........+ ...+.+|+..+-|-|+
T Consensus 286 lRpGRfDk~--i~lPd~e~R~eIL~~~~r~~~l~----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 286 IRDGRMEKF--YWAPTREDRIGVVHGIFRDDGVS----REDVVKLVDTFPGQPL 333 (413)
T ss_pred cCCCCCCce--eCCCCHHHHHHHHHHHhccCCCC----HHHHHHHHHcCCCCCc
Confidence 11 1122 33446666667777665332222 2447778888877775
No 129
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.13 E-value=1.8e-05 Score=72.14 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=80.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
++-|.|+|++|+|||++|+.+++.....|- .+. .. ++.. ...... .......+.....
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~-~s---------eL~~----k~~Ge~-----~~~vr~lF~~A~~ 274 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSATFL---RVV-GS---------ELIQ----KYLGDG-----PKLVRELFRVAEE 274 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe-cc---------hhhh----hhcchH-----HHHHHHHHHHHHh
Confidence 456889999999999999999998654331 111 00 1110 000000 0001112222233
Q ss_pred CceEEEEEecCCCh-------------h---hHHHHhcccCC--CCCCcEEEEEeCchhHHHh-----cCCCeEEEecCC
Q 020206 83 RKKVLIVFDDVNHP-------------R---QIEFLIGNLDW--FASGSRILITARDKQALIN-----CGVNKIYQIKEL 139 (329)
Q Consensus 83 ~~~~LlvlDdv~~~-------------~---~~~~l~~~l~~--~~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l 139 (329)
..+++|+||+++.. + .+..++..+.. ...+..||+||........ ......+.++..
T Consensus 275 ~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~P 354 (438)
T PTZ00361 275 NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNP 354 (438)
T ss_pred CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCC
Confidence 56789999997321 0 12223322221 1235567777765533222 123457889999
Q ss_pred ChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCch
Q 020206 140 VHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPI 178 (329)
Q Consensus 140 ~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl 178 (329)
+.++-.++|..+...-. ..+.. ...++..+.|.--
T Consensus 355 d~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~sg 390 (438)
T PTZ00361 355 DEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELSG 390 (438)
T ss_pred CHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCCH
Confidence 99999999987653221 11212 5667777766544
No 130
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.12 E-value=6.8e-05 Score=70.36 Aligned_cols=156 Identities=14% Similarity=0.138 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+-+.++||+|+|||+||+.++...... ++.. +..++... ..... .......+......
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~----~~~i---------~~~~~~~~----~~g~~-----~~~l~~~f~~a~~~ 146 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVP----FFSI---------SGSDFVEM----FVGVG-----ASRVRDLFEQAKKN 146 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC----eeec---------cHHHHHHH----Hhccc-----HHHHHHHHHHHHhc
Confidence 458899999999999999998875321 1111 11111111 00000 00112223333345
Q ss_pred ceEEEEEecCCCh----------------hhHHHHhcccCCC--CCCcEEEEEeCchhHH-----HhcCCCeEEEecCCC
Q 020206 84 KKVLIVFDDVNHP----------------RQIEFLIGNLDWF--ASGSRILITARDKQAL-----INCGVNKIYQIKELV 140 (329)
Q Consensus 84 ~~~LlvlDdv~~~----------------~~~~~l~~~l~~~--~~~~~ilitsr~~~~~-----~~~~~~~~~~l~~l~ 140 (329)
.+++|+|||++.. ..+..++..+... ..+..||.||...... ........+.++..+
T Consensus 147 ~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd 226 (495)
T TIGR01241 147 APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD 226 (495)
T ss_pred CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCC
Confidence 6789999999431 1122333332211 1233444455443211 111344678888889
Q ss_pred hhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCC-chHHHHHH
Q 020206 141 HVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKILG 184 (329)
Q Consensus 141 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 184 (329)
.++-.+++........... ......+++.+.|. +..|..++
T Consensus 227 ~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 227 IKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred HHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHHH
Confidence 8888888887763322211 12266788888874 45555544
No 131
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.11 E-value=5.9e-06 Score=73.15 Aligned_cols=88 Identities=14% Similarity=0.165 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc-CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-------chH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR-RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-------GLN 75 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~ 75 (329)
....|+|++|+|||||++++++.+.. +|+..+|+...++. .....++++.+...+... ..+..... ...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~s-t~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVAS-TFDEPAERHVQVAEMVIE 246 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEE-CCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999997654 58888898844432 125666777665321111 11111111 111
Q ss_pred HHHh-hhcCceEEEEEecCC
Q 020206 76 FQSK-RLTRKKVLIVFDDVN 94 (329)
Q Consensus 76 ~l~~-~~~~~~~LlvlDdv~ 94 (329)
.-.. ...+++++|++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 1111 135689999999994
No 132
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.1e-05 Score=68.65 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH----hcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI----SRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~----~~~~~~~~~~ 37 (329)
.|+|.++||||.|||+|++.+|+.+ .++|.....+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 5899999999999999999999975 3445544443
No 133
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.11 E-value=4e-05 Score=70.64 Aligned_cols=171 Identities=15% Similarity=0.087 Sum_probs=103.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCC---CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh-
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISRRF---EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL- 81 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~- 81 (329)
-..+|+.|+||||+|+-+++.+.-.- ...|-.+............+++. -+...+..++.+++..
T Consensus 41 YlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviE-----------iDaASn~gVddiR~i~e 109 (515)
T COG2812 41 YLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIE-----------IDAASNTGVDDIREIIE 109 (515)
T ss_pred hhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchh-----------hhhhhccChHHHHHHHH
Confidence 45789999999999999998653221 11111110000001111222221 0011111333333322
Q ss_pred -------cCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh--HHHhcCCCeEEEecCCChhhhHHHHhh
Q 020206 82 -------TRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ--ALINCGVNKIYQIKELVHVDALKLLNQ 150 (329)
Q Consensus 82 -------~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~--~~~~~~~~~~~~l~~l~~~e~~~ll~~ 150 (329)
.++.=+.|+|+|+ ....+..++..+...+....+|+.|++.. ..+.....+.+.++.++.++....+..
T Consensus 110 ~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~ 189 (515)
T COG2812 110 KVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAA 189 (515)
T ss_pred HhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHH
Confidence 2234489999995 56779999999988788888888777663 223345667899999999999999988
Q ss_pred hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcC
Q 020206 151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR 189 (329)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~ 189 (329)
.+.... -...++++..|.+..+|...-...+..++..
T Consensus 190 i~~~E~--I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~ 226 (515)
T COG2812 190 ILDKEG--INIEEDALSLIARAAEGSLRDALSLLDQAIA 226 (515)
T ss_pred HHHhcC--CccCHHHHHHHHHHcCCChhhHHHHHHHHHH
Confidence 873222 2345677888999999977655555444433
No 134
>PRK04132 replication factor C small subunit; Provisional
Probab=98.08 E-value=0.00022 Score=69.87 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=95.7
Q ss_pred EEc--CCCCcHHHHHHHHHHHH-hcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCc
Q 020206 8 IWG--IGGVGKTAIAGAFFSKI-SRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRK 84 (329)
Q Consensus 8 I~G--~~GiGKTtLa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (329)
+.| |.++||||+|..+++.+ .+.+...+.-.+. +..... +.++.+...+....+. ...+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNA---Sd~rgi-d~IR~iIk~~a~~~~~--------------~~~~ 630 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNA---SDERGI-NVIREKVKEFARTKPI--------------GGAS 630 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeC---CCcccH-HHHHHHHHHHHhcCCc--------------CCCC
Confidence 457 88999999999999876 3333332332222 111122 2333433332211110 0113
Q ss_pred eEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCC
Q 020206 85 KVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDA 160 (329)
Q Consensus 85 ~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~ 160 (329)
.-++|+|+++. .+....++..+...+..+++|+++.+.. +... .+..+.+.+.+++.++....+...+..... .
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~ 708 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--E 708 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--C
Confidence 46999999964 3456666666655456777777666552 2222 234578999999999999888876632221 1
Q ss_pred chHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 161 SYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 161 ~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
..++.+..|+..++|.+.....+...+
T Consensus 709 i~~e~L~~Ia~~s~GDlR~AIn~Lq~~ 735 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRRAINILQAA 735 (846)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 235679999999999997655554433
No 135
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.07 E-value=1.2e-05 Score=71.53 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCC-c-----chHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPN-I-----GLNF 76 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~-----~~~~ 76 (329)
..+.|+|++|+|||||++.+++.+..+ |+..+|+...++ ....+.++++.+...+........... . ..+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 468899999999999999999987655 777888873322 124677888887543322221111111 0 1111
Q ss_pred HHh-hhcCceEEEEEecCCCh
Q 020206 77 QSK-RLTRKKVLIVFDDVNHP 96 (329)
Q Consensus 77 l~~-~~~~~~~LlvlDdv~~~ 96 (329)
... ...+++++|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 111 13578999999999543
No 136
>PRK06921 hypothetical protein; Provisional
Probab=98.06 E-value=2e-05 Score=67.50 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~ 38 (329)
..-+.++|++|+|||.|+..+++.+.++ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4568999999999999999999988765 44555655
No 137
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00017 Score=63.62 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=51.6
Q ss_pred EEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCCc
Q 020206 86 VLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDAS 161 (329)
Q Consensus 86 ~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~ 161 (329)
-++|+|+++ +.+....++..+.....+..+|++|.+.. +... ....+.+.+.+++.+++.+.+.+.. ....
T Consensus 115 kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~ 189 (325)
T PRK08699 115 RVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VAEP 189 (325)
T ss_pred eEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CCcH
Confidence 355668874 45556666666554445666777777753 2222 2345678899999999999987542 1111
Q ss_pred hHHHHHHHHHHhcCCchH
Q 020206 162 YIELTHEAIKYAQGVPIA 179 (329)
Q Consensus 162 ~~~~~~~i~~~~~g~Pla 179 (329)
.. ....++|.|+.
T Consensus 190 ----~~-~l~~~~g~p~~ 202 (325)
T PRK08699 190 ----EE-RLAFHSGAPLF 202 (325)
T ss_pred ----HH-HHHHhCCChhh
Confidence 11 23567898854
No 138
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.6e-05 Score=73.22 Aligned_cols=137 Identities=12% Similarity=0.131 Sum_probs=73.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
+.++++++||||+|||+|++.+|+...++|-... ++++.... ++ +........ ..+.-.+..+.+ .
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s----LGGvrDEA---EI-----RGHRRTYIG-amPGrIiQ~mkk-a 414 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS----LGGVRDEA---EI-----RGHRRTYIG-AMPGKIIQGMKK-A 414 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe----cCccccHH---Hh-----ccccccccc-cCChHHHHHHHH-h
Confidence 3479999999999999999999999877653222 22222111 00 011000000 111112222332 3
Q ss_pred cCceEEEEEecCCCh------------------hhHHHHhcccCCCCC-CcEE-EEEeCch-h--HHHhcCCCeEEEecC
Q 020206 82 TRKKVLIVFDDVNHP------------------RQIEFLIGNLDWFAS-GSRI-LITARDK-Q--ALINCGVNKIYQIKE 138 (329)
Q Consensus 82 ~~~~~LlvlDdv~~~------------------~~~~~l~~~l~~~~~-~~~i-litsr~~-~--~~~~~~~~~~~~l~~ 138 (329)
.-++-+++||+++.. ++-..|.....+..- =+.| .|+|-|. . ..+..+....+++.+
T Consensus 415 ~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsg 494 (782)
T COG0466 415 GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSG 494 (782)
T ss_pred CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecC
Confidence 345669999999431 111111111111111 1223 3444433 2 223345677899999
Q ss_pred CChhhhHHHHhhhh
Q 020206 139 LVHVDALKLLNQCA 152 (329)
Q Consensus 139 l~~~e~~~ll~~~~ 152 (329)
.+++|-.++-.+++
T Consensus 495 Yt~~EKl~IAk~~L 508 (782)
T COG0466 495 YTEDEKLEIAKRHL 508 (782)
T ss_pred CChHHHHHHHHHhc
Confidence 99999999988776
No 139
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.02 E-value=6.3e-05 Score=62.36 Aligned_cols=28 Identities=21% Similarity=0.523 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF 31 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~ 31 (329)
.-|.++|..|+|||++++.+...+..+-
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 4578999999999999999999887655
No 140
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.01 E-value=0.00011 Score=73.01 Aligned_cols=150 Identities=14% Similarity=0.088 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC-C-----CceEEEeccchhhhc----CChHHHHHHHHHHHhcCCCCCCCCCcc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR-F-----EGSYFAHNVREAEET----GKLADLRKELLSTLLNDGNMNKFPNIG 73 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~-~-----~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~ 73 (329)
+-+.++|++|+|||++|..+++.+... . ...+|..+....... ..+.+-+
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl-------------------- 260 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERL-------------------- 260 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHH--------------------
Confidence 456899999999999999999987532 1 234454322211100 0011111
Q ss_pred hHHHHhhhcCceEEEEEecCCCh---------hhHHHHhc-ccCCCCCCcEEEEEeCchhHHH-------hcCCCeEEEe
Q 020206 74 LNFQSKRLTRKKVLIVFDDVNHP---------RQIEFLIG-NLDWFASGSRILITARDKQALI-------NCGVNKIYQI 136 (329)
Q Consensus 74 ~~~l~~~~~~~~~LlvlDdv~~~---------~~~~~l~~-~l~~~~~~~~ilitsr~~~~~~-------~~~~~~~~~l 136 (329)
...+.+....++++|++|+++.. .+...++. .+. ....++|.+|.....-. .....+.+.+
T Consensus 261 ~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v 338 (821)
T CHL00095 261 KRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYV 338 (821)
T ss_pred HHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEec
Confidence 11122222346789999999411 11223332 221 22345555555443211 1123457788
Q ss_pred cCCChhhhHHHHhhhhc--CCCCCCCchHHHHHHHHHHhcC
Q 020206 137 KELVHVDALKLLNQCAF--GRDHPDASYIELTHEAIKYAQG 175 (329)
Q Consensus 137 ~~l~~~e~~~ll~~~~~--~~~~~~~~~~~~~~~i~~~~~g 175 (329)
+..+.++...+++.... .........++++..++..+.+
T Consensus 339 ~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 339 GEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 88899988888764320 0111111334556666666653
No 141
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.00 E-value=3.1e-05 Score=64.52 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.++|.|++|+|||+|+..+.......|..++++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5789999999999999999999999997776664
No 142
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00032 Score=63.79 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=73.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
..-|.+.|++|+|||+||.+++.. ..|+++-.++ ......+.+-.+... ....+.+.-+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~sEsaKc~~---------------i~k~F~DAYk 596 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGLSESAKCAH---------------IKKIFEDAYK 596 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCccHHHHHHH---------------HHHHHHHhhc
Confidence 456789999999999999999764 6788877766 222222222211110 0111112222
Q ss_pred CceEEEEEecCCChh------------hHHHHhcccCCCCC-CcEEE--EEeCchhHHHhcC----CCeEEEecCCCh-h
Q 020206 83 RKKVLIVFDDVNHPR------------QIEFLIGNLDWFAS-GSRIL--ITARDKQALINCG----VNKIYQIKELVH-V 142 (329)
Q Consensus 83 ~~~~LlvlDdv~~~~------------~~~~l~~~l~~~~~-~~~il--itsr~~~~~~~~~----~~~~~~l~~l~~-~ 142 (329)
..--.||+||++..- .++.++-.+...++ |-+++ -||....++..++ ....+.++.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 334589999984322 24444444443333 33443 3555556666653 445788999977 6
Q ss_pred hhHHHHhhh
Q 020206 143 DALKLLNQC 151 (329)
Q Consensus 143 e~~~ll~~~ 151 (329)
+..+.+...
T Consensus 677 ~~~~vl~~~ 685 (744)
T KOG0741|consen 677 QLLEVLEEL 685 (744)
T ss_pred HHHHHHHHc
Confidence 677777654
No 143
>PTZ00202 tuzin; Provisional
Probab=97.98 E-value=0.00048 Score=61.94 Aligned_cols=137 Identities=10% Similarity=0.007 Sum_probs=79.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc----chHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI----GLNFQS 78 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~l~ 78 (329)
++++.|+|++|+|||||++.+..... ...++.+.. +..+++..++..++.... ..... +.+.+.
T Consensus 286 privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl 353 (550)
T PTZ00202 286 PRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPNV--EACGDLLDFISEACR 353 (550)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCCc--ccHHHHHHHHHHHHH
Confidence 45889999999999999999986543 335554332 568999999999986432 22122 233333
Q ss_pred hh-hc-CceEEEEEecCCChhh---HHHHhcccCCCCCCcEEEEEeCchhHH---HhcCCCeEEEecCCChhhhHHHHhh
Q 020206 79 KR-LT-RKKVLIVFDDVNHPRQ---IEFLIGNLDWFASGSRILITARDKQAL---INCGVNKIYQIKELVHVDALKLLNQ 150 (329)
Q Consensus 79 ~~-~~-~~~~LlvlDdv~~~~~---~~~l~~~l~~~~~~~~ilitsr~~~~~---~~~~~~~~~~l~~l~~~e~~~ll~~ 150 (329)
+. .. ++..+||+-=-+..+. +.+.... ..-..-|.|++----+... ...+....+.+++|+.++|-++.++
T Consensus 354 ~~~~e~GrtPVLII~lreg~~l~rvyne~v~l-a~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 354 RAKKMNGETPLLVLKLREGSSLQRVYNEVVAL-ACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred HHHHhCCCCEEEEEEecCCCcHHHHHHHHHHH-HccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 32 22 5666777643322221 2222111 1112344555433222111 1123445788999999999999877
Q ss_pred hh
Q 020206 151 CA 152 (329)
Q Consensus 151 ~~ 152 (329)
..
T Consensus 433 ~~ 434 (550)
T PTZ00202 433 AI 434 (550)
T ss_pred cc
Confidence 65
No 144
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=5.6e-05 Score=69.69 Aligned_cols=149 Identities=15% Similarity=0.179 Sum_probs=78.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
+|=|.+|||+|+|||.||..++....- -++. ++ . .++.....++.. ....+.+.+...
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~v-----Pf~~----is----A----peivSGvSGESE-----kkiRelF~~A~~ 280 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELGV-----PFLS----IS----A----PEIVSGVSGESE-----KKIRELFDQAKS 280 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcCC-----ceEe----ec----c----hhhhcccCcccH-----HHHHHHHHHHhc
Confidence 456899999999999999999887542 2222 10 1 112222221111 112333444455
Q ss_pred CceEEEEEecCCCh--------h-----hHHHHhcccCCCC----CCc-EEEE--EeCchhHHHhc----CCCeEEEecC
Q 020206 83 RKKVLIVFDDVNHP--------R-----QIEFLIGNLDWFA----SGS-RILI--TARDKQALINC----GVNKIYQIKE 138 (329)
Q Consensus 83 ~~~~LlvlDdv~~~--------~-----~~~~l~~~l~~~~----~~~-~ili--tsr~~~~~~~~----~~~~~~~l~~ 138 (329)
..+|++++|+++.. . -...++..+.... .|- .++| |+|....-..+ +..+.|.|.-
T Consensus 281 ~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~v 360 (802)
T KOG0733|consen 281 NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGV 360 (802)
T ss_pred cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecC
Confidence 67999999999421 1 1223333332211 122 2333 44443222222 3446777777
Q ss_pred CChhhhHHHHhhhhcCCCCCC-CchHHHHHHHHHHhcCCc
Q 020206 139 LVHVDALKLLNQCAFGRDHPD-ASYIELTHEAIKYAQGVP 177 (329)
Q Consensus 139 l~~~e~~~ll~~~~~~~~~~~-~~~~~~~~~i~~~~~g~P 177 (329)
-++.+=.++++..+.+-..+. -. .++|+..+-|+-
T Consensus 361 P~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGfV 396 (802)
T KOG0733|consen 361 PSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGFV 396 (802)
T ss_pred CchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCcc
Confidence 777777777777664433222 12 666777777653
No 145
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.96 E-value=3e-05 Score=63.54 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=60.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe-ccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH-NVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
++.|.|++|+||||++..++..+.......++.. +..+..... ...+. .............+.+...++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~-----~~~~i----~q~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHES-----KRSLI----NQREVGLDTLSFENALKAALRQ 73 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccC-----cccee----eecccCCCccCHHHHHHHHhcC
Confidence 6899999999999999998887765444343332 111110000 00000 0000001111244556666666
Q ss_pred ceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchh
Q 020206 84 KKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQ 123 (329)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~ 123 (329)
.+=+|++|++.+.+.+...+... ..|..++.|+....
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~ 110 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNS 110 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCc
Confidence 77799999998877766655442 23455677776553
No 146
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.94 E-value=8.8e-06 Score=62.62 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
|.|+|++|+|||+|++.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 147
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.93 E-value=0.00021 Score=61.21 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+-+.|.|++|+|||++|+.++...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999855
No 148
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.91 E-value=0.00016 Score=69.33 Aligned_cols=52 Identities=13% Similarity=-0.002 Sum_probs=34.1
Q ss_pred CeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206 131 NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 184 (329)
Q Consensus 131 ~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 184 (329)
...+.+++++.++...++.+.+..... ...+++.+.|.+.+..-+.++..++
T Consensus 345 ~~~i~~~pls~edi~~Il~~~a~~~~v--~ls~eal~~L~~ys~~gRraln~L~ 396 (615)
T TIGR02903 345 CAEVFFEPLTPEDIALIVLNAAEKINV--HLAAGVEELIARYTIEGRKAVNILA 396 (615)
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHCCCcHHHHHHHHH
Confidence 346789999999999999987632211 1234566667666654456666554
No 149
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.89 E-value=0.00026 Score=69.75 Aligned_cols=155 Identities=14% Similarity=0.172 Sum_probs=81.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
++-+.++||+|+|||++|+.++......| ..... .++. ....++ ........+...-.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~---------~~l~----~~~vGe-----se~~i~~~f~~A~~ 544 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRG---------PEIL----SKWVGE-----SEKAIREIFRKARQ 544 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEeh---------HHHh----hcccCc-----HHHHHHHHHHHHHh
Confidence 34588999999999999999998765322 11111 1111 111000 00011222233334
Q ss_pred CceEEEEEecCCCh--------------hhHHHHhcccCCC--CCCcEEEEEeCchhHHH-h----cCCCeEEEecCCCh
Q 020206 83 RKKVLIVFDDVNHP--------------RQIEFLIGNLDWF--ASGSRILITARDKQALI-N----CGVNKIYQIKELVH 141 (329)
Q Consensus 83 ~~~~LlvlDdv~~~--------------~~~~~l~~~l~~~--~~~~~ilitsr~~~~~~-~----~~~~~~~~l~~l~~ 141 (329)
..+++|++|+++.. .....++..+... ..+..||.||....... . ......+.++..+.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 56799999998421 1123343333321 22334444554432211 1 13446788888898
Q ss_pred hhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCch-HHHHH
Q 020206 142 VDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPI-ALKIL 183 (329)
Q Consensus 142 ~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 183 (329)
++-.++|.....+.. .+..+ +..+++.+.|..- .|..+
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~sgadi~~~ 664 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYTGADIEAV 664 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCCHHHHHHH
Confidence 888888876552222 11112 6778888887653 34443
No 150
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.88 E-value=7e-05 Score=60.99 Aligned_cols=112 Identities=19% Similarity=0.235 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH-H-hcCCCceEEEeccchhhh--cCChHH-------HHHHHHHHHhcCCCCCCCCC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK-I-SRRFEGSYFAHNVREAEE--TGKLAD-------LRKELLSTLLNDGNMNKFPN 71 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~-~-~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~i~~~~~~~~~~~~~~~ 71 (329)
.++|++.|++|+|||.||...+-+ + ...|..+++....-.... ..-+.+ ....+...+..-.. .
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~-----~ 93 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFG-----K 93 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS------T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhC-----h
Confidence 578999999999999999998864 3 355677777654322111 001111 11112212111100 0
Q ss_pred cchHHHH----------hhhcCc---eEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206 72 IGLNFQS----------KRLTRK---KVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK 122 (329)
Q Consensus 72 ~~~~~l~----------~~~~~~---~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~ 122 (329)
...+.+. ..++++ +.+||+|++.+ ++++..++..+ +.+++++++.-..
T Consensus 94 ~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~ 156 (205)
T PF02562_consen 94 EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPS 156 (205)
T ss_dssp TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE---
T ss_pred HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCce
Confidence 0111111 133443 57999999954 56788888775 5789999988755
No 151
>PRK04296 thymidine kinase; Provisional
Probab=97.87 E-value=3.5e-05 Score=62.67 Aligned_cols=110 Identities=13% Similarity=0.008 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCC--CCCCCcchHHHHhhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNM--NKFPNIGLNFQSKRL 81 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~l~~~~ 81 (329)
.++.|+|++|.||||++..++.+...+...++++. . ....... ...++..++..... -.........+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~----~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYG----EGKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-ccccccc----CCcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 47899999999999999999998866544444442 1 0111111 11222332211110 0001112222222 2
Q ss_pred cCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206 82 TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK 122 (329)
Q Consensus 82 ~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~ 122 (329)
.++.-+||+|++.- .+++.+++..+. ..+..+++|.++.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 23445899999843 343555544432 4577899999884
No 152
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.87 E-value=1.4e-05 Score=59.80 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 153
>PRK10536 hypothetical protein; Provisional
Probab=97.87 E-value=0.00012 Score=61.33 Aligned_cols=117 Identities=14% Similarity=0.195 Sum_probs=60.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH-H-hcCCCceEEEeccchhhh-----cCChH----HHHHHHHHHHhcCCCCCCC--
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK-I-SRRFEGSYFAHNVREAEE-----TGKLA----DLRKELLSTLLNDGNMNKF-- 69 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~-~-~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~i~~~~~~~~~~~~~-- 69 (329)
..+|+++|++|+|||+||..++.. + ...|..++.....-.... +.+.. ..+..+...+......+..
T Consensus 74 ~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~ 153 (262)
T PRK10536 74 KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQY 153 (262)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 458999999999999999999874 3 344544444332111111 11111 1112221111110000000
Q ss_pred -----CCcchHHHHhhhcCce---EEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206 70 -----PNIGLNFQSKRLTRKK---VLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK 122 (329)
Q Consensus 70 -----~~~~~~~l~~~~~~~~---~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~ 122 (329)
.....-.-..+++++. .+||+|+..+ ..++..++..+ +.++++|++.-..
T Consensus 154 ~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~GD~~ 213 (262)
T PRK10536 154 CLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVIVNGDIT 213 (262)
T ss_pred HHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEEEeCChh
Confidence 0000001112344543 4999999964 45667676665 5788999887654
No 154
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.86 E-value=0.00041 Score=69.01 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
++.++||+|+|||.||+.+++.+-..
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 68999999999999999999987543
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.86 E-value=0.00038 Score=69.58 Aligned_cols=131 Identities=12% Similarity=0.053 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ 77 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l 77 (329)
..++++|++|+|||+++..+++++.... ...+|..+............ .........+
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g----------------~~e~~l~~~l 258 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRG----------------EFEERLKAVL 258 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhh----------------hHHHHHHHHH
Confidence 4567999999999999999999875431 23344332211100000000 0000011112
Q ss_pred Hhhh-cCceEEEEEecCCChh---------hHHHHhcccCCCCCCcEEEEEeCchhHHH-------hcCCCeEEEecCCC
Q 020206 78 SKRL-TRKKVLIVFDDVNHPR---------QIEFLIGNLDWFASGSRILITARDKQALI-------NCGVNKIYQIKELV 140 (329)
Q Consensus 78 ~~~~-~~~~~LlvlDdv~~~~---------~~~~l~~~l~~~~~~~~ilitsr~~~~~~-------~~~~~~~~~l~~l~ 140 (329)
.... .+++++|++|+++... +...++.... ......+|-+|..+..-. ..+..+.+.++..+
T Consensus 259 ~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~ 337 (852)
T TIGR03346 259 NEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPT 337 (852)
T ss_pred HHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCC
Confidence 2111 2368999999995221 1222322221 122334554444332211 11234568899999
Q ss_pred hhhhHHHHhhh
Q 020206 141 HVDALKLLNQC 151 (329)
Q Consensus 141 ~~e~~~ll~~~ 151 (329)
.++...+++..
T Consensus 338 ~~~~~~iL~~~ 348 (852)
T TIGR03346 338 VEDTISILRGL 348 (852)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 156
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.85 E-value=0.00039 Score=54.90 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=65.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc--------------------CCCceEEEeccchhhhcCChHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR--------------------RFEGSYFAHNVREAEETGKLADLRKELLSTLLN 62 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 62 (329)
+..+.++|+.|+||+++|..+++.+-. .++...|+... .........++. .+...+..
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~~~~i~i~~ir-~i~~~~~~ 96 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KKKKSIKIDQIR-EIIEFLSL 96 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TSSSSBSHHHHH-HHHHHCTS
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cccchhhHHHHH-HHHHHHHH
Confidence 356899999999999999999986522 23334443210 000011222221 22222211
Q ss_pred CCCCCCCCCcchHHHHhhhcCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecC
Q 020206 63 DGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKE 138 (329)
Q Consensus 63 ~~~~~~~~~~~~~~l~~~~~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~ 138 (329)
.. ..+..=++|+||++ +.+....++..+.+.+.+..+|++|++.. +... ......+.+.+
T Consensus 97 ~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 97 SP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRP 160 (162)
T ss_dssp S-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE--
T ss_pred HH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCC
Confidence 11 11234589999996 45667778777777677888888887763 2222 34556777776
Q ss_pred CC
Q 020206 139 LV 140 (329)
Q Consensus 139 l~ 140 (329)
++
T Consensus 161 ls 162 (162)
T PF13177_consen 161 LS 162 (162)
T ss_dssp --
T ss_pred CC
Confidence 54
No 157
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=0.00033 Score=66.81 Aligned_cols=57 Identities=9% Similarity=-0.115 Sum_probs=35.3
Q ss_pred CeEEEecCCChhhhHHHHhhhhcCCCC---CC--CchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 131 NKIYQIKELVHVDALKLLNQCAFGRDH---PD--ASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 131 ~~~~~l~~l~~~e~~~ll~~~~~~~~~---~~--~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
...+.+.+++..+....+...+..... .. ...++.+..|+..++|--.....+...+
T Consensus 266 v~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 266 VSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFS 327 (637)
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 346889999999977777766532110 11 1124668888888888665544444443
No 158
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.83 E-value=6.2e-05 Score=59.27 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
++.|+|++|+|||+++.+++.........++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999998766555566665
No 159
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00043 Score=64.09 Aligned_cols=150 Identities=18% Similarity=0.214 Sum_probs=77.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCce
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK 85 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (329)
|.+|||+|+|||-||+.+++.-.-.| ++.. .+ +++....++.. ......+.+.-...+
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag~NF-----isVK-------GP-----ELlNkYVGESE-----rAVR~vFqRAR~saP 605 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEAGANF-----ISVK-------GP-----ELLNKYVGESE-----RAVRQVFQRARASAP 605 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhccCce-----Eeec-------CH-----HHHHHHhhhHH-----HHHHHHHHHhhcCCC
Confidence 78999999999999999998754433 3311 11 12222222111 012223333344579
Q ss_pred EEEEEecCCCh-------------hhHHHHhcccCCCC--CCcEEEEEe-CchhH----HHhcCCCeEEEecCCChhhhH
Q 020206 86 VLIVFDDVNHP-------------RQIEFLIGNLDWFA--SGSRILITA-RDKQA----LINCGVNKIYQIKELVHVDAL 145 (329)
Q Consensus 86 ~LlvlDdv~~~-------------~~~~~l~~~l~~~~--~~~~ilits-r~~~~----~~~~~~~~~~~l~~l~~~e~~ 145 (329)
|+|+||+++.. ..+..++.-+.... .|.-||-.| |..-+ ++..+....+-++.-+.+|-.
T Consensus 606 CVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~ 685 (802)
T KOG0733|consen 606 CVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERV 685 (802)
T ss_pred eEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHH
Confidence 99999999421 12334443333221 233344333 33222 121234456667777888888
Q ss_pred HHHhhhhcCCCCCCCchHHHHHHHHHH--hcCCch
Q 020206 146 KLLNQCAFGRDHPDASYIELTHEAIKY--AQGVPI 178 (329)
Q Consensus 146 ~ll~~~~~~~~~~~~~~~~~~~~i~~~--~~g~Pl 178 (329)
+++.........+... +=.++.|+.. |.|+.-
T Consensus 686 ~ILK~~tkn~k~pl~~-dVdl~eia~~~~c~gftG 719 (802)
T KOG0733|consen 686 AILKTITKNTKPPLSS-DVDLDEIARNTKCEGFTG 719 (802)
T ss_pred HHHHHHhccCCCCCCc-ccCHHHHhhcccccCCch
Confidence 8888776432211111 1115556544 446554
No 160
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00011 Score=68.51 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
++-|.++||||+|||++|+.+++...-.| +. +.. .+++..+.+++. ....+.+.+.-.
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAne~~~nF-----ls----vkg--------pEL~sk~vGeSE-----r~ir~iF~kAR~ 525 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALANEAGMNF-----LS----VKG--------PELFSKYVGESE-----RAIREVFRKARQ 525 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhhhhcCCe-----ee----ccC--------HHHHHHhcCchH-----HHHHHHHHHHhh
Confidence 46789999999999999999998765443 21 000 111222222111 112222333333
Q ss_pred CceEEEEEecCCChh-------------hHHHHhcccCCCCCC-cEEEEE--eCchhHHHh----cCCCeEEEecCCChh
Q 020206 83 RKKVLIVFDDVNHPR-------------QIEFLIGNLDWFASG-SRILIT--ARDKQALIN----CGVNKIYQIKELVHV 142 (329)
Q Consensus 83 ~~~~LlvlDdv~~~~-------------~~~~l~~~l~~~~~~-~~ilit--sr~~~~~~~----~~~~~~~~l~~l~~~ 142 (329)
-.+++|.||+++... -+..++.-+...... ..+|+. .|...+-.. .+..+.+.++.-+.+
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 457899999984321 133333333222222 233443 333322111 134567777777777
Q ss_pred hhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCchH
Q 020206 143 DALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPIA 179 (329)
Q Consensus 143 e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pla 179 (329)
--.++|..+...-. .+..+ ..+|++.++|..-|
T Consensus 606 aR~~Ilk~~~kkmp~~~~vd----l~~La~~T~g~SGA 639 (693)
T KOG0730|consen 606 ARLEILKQCAKKMPFSEDVD----LEELAQATEGYSGA 639 (693)
T ss_pred HHHHHHHHHHhcCCCCcccc----HHHHHHHhccCChH
Confidence 77788887763322 11112 78888888887643
No 161
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.81 E-value=0.00018 Score=70.89 Aligned_cols=152 Identities=15% Similarity=0.102 Sum_probs=77.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+-+.|+|++|+|||+|++.+++.....| +.+. ........ ... ........+.....
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~-~g~-----------------~~~~l~~lf~~a~~ 269 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKY-YGE-----------------SEERLREIFKEAEE 269 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhccc-ccH-----------------HHHHHHHHHHHHHh
Confidence 35689999999999999999998764322 1221 11110000 000 00001222223334
Q ss_pred CceEEEEEecCCCh-------------hhHHHHhcccCCC-CCCcEEEE-EeCchhHH-Hhc----CCCeEEEecCCChh
Q 020206 83 RKKVLIVFDDVNHP-------------RQIEFLIGNLDWF-ASGSRILI-TARDKQAL-INC----GVNKIYQIKELVHV 142 (329)
Q Consensus 83 ~~~~LlvlDdv~~~-------------~~~~~l~~~l~~~-~~~~~ili-tsr~~~~~-~~~----~~~~~~~l~~l~~~ 142 (329)
..+.+|+||+++.. .....++..+... ..+..++| +|...... ... .....+.++..+.+
T Consensus 270 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~ 349 (733)
T TIGR01243 270 NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKR 349 (733)
T ss_pred cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHH
Confidence 56789999998421 1123333333222 22334444 44332211 111 23356778888888
Q ss_pred hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchH
Q 020206 143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIA 179 (329)
Q Consensus 143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 179 (329)
+-.+++........... ......+++.+.|..-+
T Consensus 350 ~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 350 ARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred HHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCCHH
Confidence 88888876542221111 11267788888887543
No 162
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.80 E-value=0.0003 Score=58.42 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh-h
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR-L 81 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-~ 81 (329)
++.|..+||+|.|||.+|+.+++..+. -++. + ...+++... .+++. ..+..+.++ .
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kv-----p~l~----v----kat~liGeh----VGdga------r~Ihely~rA~ 207 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKV-----PLLL----V----KATELIGEH----VGDGA------RRIHELYERAR 207 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCC-----ceEE----e----chHHHHHHH----hhhHH------HHHHHHHHHHH
Confidence 578999999999999999999876442 1221 0 111111111 11110 022222222 3
Q ss_pred cCceEEEEEecCCCh--------------hhHHHHhcccCCC--CCCcEEEEEeCchhHHHh---cCCCeEEEecCCChh
Q 020206 82 TRKKVLIVFDDVNHP--------------RQIEFLIGNLDWF--ASGSRILITARDKQALIN---CGVNKIYQIKELVHV 142 (329)
Q Consensus 82 ~~~~~LlvlDdv~~~--------------~~~~~l~~~l~~~--~~~~~ilitsr~~~~~~~---~~~~~~~~l~~l~~~ 142 (329)
...+|++.+|+++.. +....++.-+... ..|...|-+|.+...+.. ......++..--+.+
T Consensus 208 ~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~e 287 (368)
T COG1223 208 KAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDE 287 (368)
T ss_pred hcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChH
Confidence 346899999998431 2244444444321 234455555555433322 123345666667888
Q ss_pred hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 020206 143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP 177 (329)
Q Consensus 143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (329)
|-..+++..+..-..+. ....+.++.+++|..
T Consensus 288 Er~~ile~y~k~~Plpv---~~~~~~~~~~t~g~S 319 (368)
T COG1223 288 ERLEILEYYAKKFPLPV---DADLRYLAAKTKGMS 319 (368)
T ss_pred HHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCCC
Confidence 88888887762211111 111777888888865
No 163
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.80 E-value=0.00041 Score=60.83 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=34.4
Q ss_pred EEEecCCChhhhHHHHhhhhcCCCCCC-CchHHHHHHHHHHhcCCchHH
Q 020206 133 IYQIKELVHVDALKLLNQCAFGRDHPD-ASYIELTHEAIKYAQGVPIAL 180 (329)
Q Consensus 133 ~~~l~~l~~~e~~~ll~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plal 180 (329)
.+++++++.+|+..++.-....+-... ...+...+++.-..+|||.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987653222221 344556777777789999754
No 164
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.78 E-value=0.00015 Score=71.19 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
++.++||+|+|||.||+.+++.+.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhc
Confidence 478999999999999999999873
No 165
>PRK06762 hypothetical protein; Provisional
Probab=97.78 E-value=0.00087 Score=53.18 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+++|+|+|++|+||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998886
No 166
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.77 E-value=5.7e-05 Score=61.57 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=37.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhh-cCChHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE-TGKLADLRKELLSTLLND 63 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~ 63 (329)
++++.++||.|+||||.+.+++.++..+-..+..++ .+. .....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis----~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS----ADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE----ESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec----CCCCCccHHHHHHHHHHHhccc
Confidence 579999999999999999999998876644455554 211 223334445555665543
No 167
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.77 E-value=0.0004 Score=60.76 Aligned_cols=141 Identities=16% Similarity=0.221 Sum_probs=81.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHh-cCCCCCCCCC--c----chHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL-NDGNMNKFPN--I----GLNFQ 77 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~--~----~~~~l 77 (329)
.|.|+|-+|+|||.+++++.+... ...+|++ +-+-.....++..|+.... .+..+..... . .+..+
T Consensus 32 ~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n----~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l 104 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLVRQLLRKLN---LENVWLN----CVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLL 104 (438)
T ss_pred eEEEeccCCCchhHHHHHHHhhcC---Ccceeee----hHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHH
Confidence 468999999999999999998873 3467887 5556778888888888875 2222111111 0 11122
Q ss_pred Hh--hhc--CceEEEEEecCCChhhH-----HHHhcccCCCCCCcEEEEEeCch-hHHHh--cC--CCeEEEecCCChhh
Q 020206 78 SK--RLT--RKKVLIVFDDVNHPRQI-----EFLIGNLDWFASGSRILITARDK-QALIN--CG--VNKIYQIKELVHVD 143 (329)
Q Consensus 78 ~~--~~~--~~~~LlvlDdv~~~~~~-----~~l~~~l~~~~~~~~ilitsr~~-~~~~~--~~--~~~~~~l~~l~~~e 143 (329)
.+ ... ++.++||+||++...++ ..++............|+++-.. +.... .+ ....+.++..+.+|
T Consensus 105 ~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e 184 (438)
T KOG2543|consen 105 VQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEE 184 (438)
T ss_pred HhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHH
Confidence 22 112 35899999999654432 22221111111223334444322 11111 12 23467788999999
Q ss_pred hHHHHhhhh
Q 020206 144 ALKLLNQCA 152 (329)
Q Consensus 144 ~~~ll~~~~ 152 (329)
...++.+-.
T Consensus 185 ~~~Il~~~~ 193 (438)
T KOG2543|consen 185 TQVILSRDN 193 (438)
T ss_pred HHHHHhcCC
Confidence 999997654
No 168
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.76 E-value=0.00072 Score=67.46 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..++++|++|+|||++|+.++..+..
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhc
Confidence 35779999999999999999998754
No 169
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.76 E-value=0.00012 Score=64.88 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceE-EEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCC-c-ch---HHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSY-FAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPN-I-GL---NFQ 77 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~-~~---~~l 77 (329)
..+.|+|++|+|||||++.+++.+..+.+.+. ++... ........++++.+...+......+.... . .. ...
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI--gER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI--DERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe--cCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 34689999999999999999998766554432 22211 11244667888877765443221111111 1 01 111
Q ss_pred Hhh--hcCceEEEEEecCC
Q 020206 78 SKR--LTRKKVLIVFDDVN 94 (329)
Q Consensus 78 ~~~--~~~~~~LlvlDdv~ 94 (329)
.++ -.+++++||+|++.
T Consensus 212 Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHcCCCEEEEEeCcH
Confidence 111 24789999999994
No 170
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00047 Score=67.37 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=66.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ 77 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l 77 (329)
.-+.++|++|+|||++|+.+++.+.... ...+|..+ +..++ . ..... .........+
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~---------~~~ll----a---G~~~~-Ge~e~rl~~l 270 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD---------IGSLL----A---GTKYR-GDFEKRFKAL 270 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc---------HHHHh----c---ccchh-hhHHHHHHHH
Confidence 3467899999999999999998764321 22223221 11111 0 00000 0000011112
Q ss_pred Hh-hhcCceEEEEEecCCCh----------hhHHHHhcccCCCCCCcEEEEEeCchhHHH-------hcCCCeEEEecCC
Q 020206 78 SK-RLTRKKVLIVFDDVNHP----------RQIEFLIGNLDWFASGSRILITARDKQALI-------NCGVNKIYQIKEL 139 (329)
Q Consensus 78 ~~-~~~~~~~LlvlDdv~~~----------~~~~~l~~~l~~~~~~~~ilitsr~~~~~~-------~~~~~~~~~l~~l 139 (329)
.+ .....+.+|++|+++.. .+...++..+.. ....++|-+|....... ..+..+.+.++++
T Consensus 271 ~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~eP 349 (758)
T PRK11034 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEP 349 (758)
T ss_pred HHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCC
Confidence 22 12345679999999421 222222322221 22334454444332110 1123468999999
Q ss_pred ChhhhHHHHhhhh
Q 020206 140 VHVDALKLLNQCA 152 (329)
Q Consensus 140 ~~~e~~~ll~~~~ 152 (329)
+.++..++++...
T Consensus 350 s~~~~~~IL~~~~ 362 (758)
T PRK11034 350 SIEETVQIINGLK 362 (758)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998643
No 171
>PRK08118 topology modulation protein; Reviewed
Probab=97.73 E-value=3.4e-05 Score=61.26 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+.|.|+|++|+||||||+.+++.+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998764
No 172
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=8.9e-05 Score=69.59 Aligned_cols=138 Identities=19% Similarity=0.219 Sum_probs=71.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
+.++++++||+|+|||++++.+|..+.++|-. ...+++. +..++. ........ ..+.-.+..+.+ .
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR----fSvGG~t---DvAeIk-----GHRRTYVG-AMPGkiIq~LK~-v 502 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKTSIAKSIARALNRKFFR----FSVGGMT---DVAEIK-----GHRRTYVG-AMPGKIIQCLKK-V 502 (906)
T ss_pred CCcEEEEeCCCCCCcccHHHHHHHHhCCceEE----Eeccccc---cHHhhc-----ccceeeec-cCChHHHHHHHh-h
Confidence 45789999999999999999999988776521 1122221 111111 00000000 111113333333 2
Q ss_pred cCceEEEEEecCCC------------------hhhHHHHhcccCCCC-CCcEEE-EEeCch---hHHHhcCCCeEEEecC
Q 020206 82 TRKKVLIVFDDVNH------------------PRQIEFLIGNLDWFA-SGSRIL-ITARDK---QALINCGVNKIYQIKE 138 (329)
Q Consensus 82 ~~~~~LlvlDdv~~------------------~~~~~~l~~~l~~~~-~~~~il-itsr~~---~~~~~~~~~~~~~l~~ 138 (329)
.-.+-|+.||+|+. +++-..|+..+.+.+ .=++|+ |+|=|. -..+..+....|++.+
T Consensus 503 ~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsG 582 (906)
T KOG2004|consen 503 KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSG 582 (906)
T ss_pred CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccC
Confidence 33455899999843 111122222222111 123443 333222 1122234557899999
Q ss_pred CChhhhHHHHhhhhc
Q 020206 139 LVHVDALKLLNQCAF 153 (329)
Q Consensus 139 l~~~e~~~ll~~~~~ 153 (329)
...+|-..+-.+++.
T Consensus 583 Yv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 583 YVAEEKVKIAERYLI 597 (906)
T ss_pred ccHHHHHHHHHHhhh
Confidence 999999988887763
No 173
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.70 E-value=4.9e-05 Score=58.31 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
-|+|+|+||+||||+++.+++.++++
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999999988766
No 174
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.70 E-value=0.00015 Score=64.69 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe-ccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH-NVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.++.|+|++|+||||+...++..+.......++.. +..+. .... ....................+...++
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~--------~~~~-~~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY--------VHRN-KRSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh--------hccC-ccceEEccccCCCCcCHHHHHHHhhc
Confidence 57899999999999999999887765444444443 11111 0000 00000010100111124556667777
Q ss_pred CceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206 83 RKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDK 122 (329)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~ 122 (329)
..+=.|++|++.+.+.....+... ..|..++.|....
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 888899999998877766544432 2344455555543
No 175
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.00014 Score=58.21 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEG 33 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~ 33 (329)
++|.++|+||+||||+|+++++.+++....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~ 31 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWR 31 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhh
Confidence 689999999999999999999987665433
No 176
>PHA00729 NTP-binding motif containing protein
Probab=97.70 E-value=0.00028 Score=58.24 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
...++|+|++|+|||+||..+++.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999998754
No 177
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.66 E-value=0.0021 Score=56.98 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcC---CCceEEEeccchhhhcCChHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR---FEGSYFAHNVREAEETGKLADLRKELLSTL 60 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 60 (329)
++-+|+|.|+=|+|||++.+.+.+.+... ....+++..+...........++..+...+
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 46789999999999999999999988776 333444443332222333344444444443
No 178
>PRK07261 topology modulation protein; Provisional
Probab=97.66 E-value=0.00024 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.|+|+|++|+||||||++++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998764
No 179
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.66 E-value=0.001 Score=58.83 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=66.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCC---------------------CceEEEeccchhhhcCC---hHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF---------------------EGSYFAHNVREAEETGK---LADLRKELLS 58 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~---~~~~~~~i~~ 58 (329)
+..+.++||+|+|||++|..+++.+.... +.+..+. .+.... ..+.++.+..
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~----~s~~~~~~i~~~~vr~~~~ 99 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN----PSDLRKIDIIVEQVRELAE 99 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec----ccccCCCcchHHHHHHHHH
Confidence 34689999999999999999999765322 2333332 111111 2333333333
Q ss_pred HHhcCCCCCCCCCcchHHHHhhhcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEE
Q 020206 59 TLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIY 134 (329)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~ 134 (329)
....... .+..-++++|+++. .+....++..+...+....+|++|... .+... ......+
T Consensus 100 ~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i 163 (325)
T COG0470 100 FLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRI 163 (325)
T ss_pred HhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceee
Confidence 3222111 24456999999964 344666666666556677777777644 22222 2344566
Q ss_pred EecCC
Q 020206 135 QIKEL 139 (329)
Q Consensus 135 ~l~~l 139 (329)
.+.+.
T Consensus 164 ~f~~~ 168 (325)
T COG0470 164 RFKPP 168 (325)
T ss_pred ecCCc
Confidence 77663
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.66 E-value=0.00035 Score=57.06 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
+-++++|.|++|+|||++++.+.+.+...-..+++... .......+....... ...+..+....
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap---------T~~Aa~~L~~~~~~~-------a~Ti~~~l~~~ 80 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP---------TNKAAKELREKTGIE-------AQTIHSFLYRI 80 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES---------SHHHHHHHHHHHTS--------EEEHHHHTTEE
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC---------cHHHHHHHHHhhCcc-------hhhHHHHHhcC
Confidence 34689999999999999999998877765434444431 111222222222111 00111111111
Q ss_pred ----------cCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206 82 ----------TRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK 122 (329)
Q Consensus 82 ----------~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~ 122 (329)
....-+||+|+.. +...+..++.... ..+.++|+..=..
T Consensus 81 ~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 81 PNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp CCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred CcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence 1233599999995 4456766666654 2467787766543
No 181
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.66 E-value=0.00044 Score=53.95 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=60.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhc--CCCC-----CCCCCc-----
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLN--DGNM-----NKFPNI----- 72 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-----~~~~~~----- 72 (329)
.|-|++..|.||||+|.-.+-+...+-..+.++-...+.. ...-..+++.+ ..+.- .+.. ....+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a~ 81 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-KYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAAA 81 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-ccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHHH
Confidence 6788888899999999999887766655555544333211 11222222222 00100 0000 000000
Q ss_pred -chHHHHhhhcC-ceEEEEEecCC-----ChhhHHHHhcccCCCCCCcEEEEEeCchh
Q 020206 73 -GLNFQSKRLTR-KKVLIVFDDVN-----HPRQIEFLIGNLDWFASGSRILITARDKQ 123 (329)
Q Consensus 73 -~~~~l~~~~~~-~~~LlvlDdv~-----~~~~~~~l~~~l~~~~~~~~ilitsr~~~ 123 (329)
..+...+.... .-=|+|||++- ..-..+.++..+...+.+..+|+|+|+.+
T Consensus 82 ~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 82 EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11222233333 33499999982 22223444444444466778999999874
No 182
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00034 Score=62.32 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
++++|+|+|++|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3578999999999999999999987765533444443
No 183
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0011 Score=59.37 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=78.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCce
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK 85 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (329)
-.++||||+|||+++.++|+.+. +-++...+.++ ..-.+ ++.++.. ...+
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v---~~n~d-Lr~LL~~----------------------t~~k 287 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEV---KLDSD-LRHLLLA----------------------TPNK 287 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccc---cCcHH-HHHHHHh----------------------CCCC
Confidence 35899999999999999988753 33333322221 12222 2222111 1244
Q ss_pred EEEEEecCCCh--------h------------hHHHHhcc---cCCCCCCcEEE-EEeCchhHHHh--c---CCCeEEEe
Q 020206 86 VLIVFDDVNHP--------R------------QIEFLIGN---LDWFASGSRIL-ITARDKQALIN--C---GVNKIYQI 136 (329)
Q Consensus 86 ~LlvlDdv~~~--------~------------~~~~l~~~---l~~~~~~~~il-itsr~~~~~~~--~---~~~~~~~l 136 (329)
-+||++|++.. + .+.-++.. +...+.+-+|| +||....-+.. . +-.-.+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 57888887321 0 01112222 22223334554 56654422211 1 22346777
Q ss_pred cCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcC
Q 020206 137 KELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR 189 (329)
Q Consensus 137 ~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~ 189 (329)
.--+.+....|+........ ......+|.+...+.-+.=..+++.+-.
T Consensus 368 gyCtf~~fK~La~nYL~~~~-----~h~L~~eie~l~~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE-----DHRLFDEIERLIEETEVTPAQVAEELMK 415 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC-----CcchhHHHHHHhhcCccCHHHHHHHHhh
Confidence 88889988888888873322 1234666666666655555555555533
No 184
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0014 Score=61.77 Aligned_cols=148 Identities=20% Similarity=0.164 Sum_probs=80.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCce
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK 85 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (329)
|.++||+|+|||-||.+++.... .-+++ + ..++-+-+.| +.. .+...+.+.+....++
T Consensus 704 iLLyGppGcGKT~la~a~a~~~~-----~~fis----v---KGPElL~KyI----GaS------Eq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 704 ILLYGPPGCGKTLLASAIASNSN-----LRFIS----V---KGPELLSKYI----GAS------EQNVRDLFERAQSAKP 761 (952)
T ss_pred eEEECCCCCcHHHHHHHHHhhCC-----eeEEE----e---cCHHHHHHHh----ccc------HHHHHHHHHHhhccCC
Confidence 78999999999999999977643 22333 1 2222222222 111 1113444555556699
Q ss_pred EEEEEecCCCh-------------hhHHHHhcccCCC--CCCcEEE-EEeCchhHHHhc----CCCeEEEecCCChhhhH
Q 020206 86 VLIVFDDVNHP-------------RQIEFLIGNLDWF--ASGSRIL-ITARDKQALINC----GVNKIYQIKELVHVDAL 145 (329)
Q Consensus 86 ~LlvlDdv~~~-------------~~~~~l~~~l~~~--~~~~~il-itsr~~~~~~~~----~~~~~~~l~~l~~~e~~ 145 (329)
|++.||++++. .-...++..+... -.|.-|+ .|||...+-+.+ +..+.+.-+..++.|-.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 99999999531 2244455444321 2244444 366665322221 22234444555666667
Q ss_pred HHHhhhhcC-CCCCCCchHHHHHHHHHHhcCCchH
Q 020206 146 KLLNQCAFG-RDHPDASYIELTHEAIKYAQGVPIA 179 (329)
Q Consensus 146 ~ll~~~~~~-~~~~~~~~~~~~~~i~~~~~g~Pla 179 (329)
+++...... ....+ -..+-++.+++|+.-|
T Consensus 842 ~il~~ls~s~~~~~~----vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 842 EILQVLSNSLLKDTD----VDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHhhccCCccc----cchHHHhhhcCCCchh
Confidence 777655421 11112 2277889999998764
No 185
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.64 E-value=0.00038 Score=68.90 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF 31 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~ 31 (329)
.+.+.++||+|+|||++|+.+++.+...|
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 35789999999999999999999875443
No 186
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00012 Score=70.32 Aligned_cols=93 Identities=22% Similarity=0.261 Sum_probs=59.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-chHHHHhhhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLNFQSKRLTR 83 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 83 (329)
...+.||.|||||-||+++++.+-+.-..-+ -.++.++.++++++.++.. +++...- .-..+.+..++
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~ali-R~DMSEy~EkHsVSrLIGa----------PPGYVGyeeGG~LTEaVRr 591 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALI-RIDMSEYMEKHSVSRLIGA----------PPGYVGYEEGGQLTEAVRR 591 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccce-eechHHHHHHHHHHHHhCC----------CCCCceeccccchhHhhhc
Confidence 4567999999999999999998754323222 2335555555555544421 1122211 23456667777
Q ss_pred ceE-EEEEecCC--ChhhHHHHhcccCC
Q 020206 84 KKV-LIVFDDVN--HPRQIEFLIGNLDW 108 (329)
Q Consensus 84 ~~~-LlvlDdv~--~~~~~~~l~~~l~~ 108 (329)
+|+ +|.||+++ +++-+..|++.+.+
T Consensus 592 ~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 592 KPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred CCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 876 89999995 56667777777653
No 187
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.61 E-value=0.00022 Score=60.11 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|+|++|+|||+|+.+++.....+-..++|+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 467899999999999999999876544555666765
No 188
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.60 E-value=0.00016 Score=65.58 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc--CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCC-cchHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR--RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPN-IGLNFQSK 79 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~l~~ 79 (329)
.+.++++|++|+|||++|+.+++.+.. .+..+.|+. +.+..+..+++... ......-.... ...+.+..
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G~----rP~~vgy~~~~G~f~~~~~~ 265 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQGY----RPNGVGFRRKDGIFYNFCQQ 265 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhccc----CCCCCCeEecCchHHHHHHH
Confidence 356889999999999999999998754 344455554 44445555554322 11111001111 12223333
Q ss_pred hhc--CceEEEEEecCCC
Q 020206 80 RLT--RKKVLIVFDDVNH 95 (329)
Q Consensus 80 ~~~--~~~~LlvlDdv~~ 95 (329)
... +++++||+|++..
T Consensus 266 A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 266 AKEQPEKKYVFIIDEINR 283 (459)
T ss_pred HHhcccCCcEEEEehhhc
Confidence 222 4689999999953
No 189
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.59 E-value=0.00021 Score=59.81 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|+|++|+|||+|+.+++.........++|+.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 468899999999999999999988766667778876
No 190
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.58 E-value=0.00065 Score=54.80 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+|+|.|++|+||||+++.+++.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998876
No 191
>PRK14974 cell division protein FtsY; Provisional
Probab=97.56 E-value=0.00087 Score=59.14 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
++++.++|++|+||||++..++..+...-..++++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li 174 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIA 174 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 57999999999999999999998876653334343
No 192
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.54 E-value=0.00078 Score=55.33 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
-|.+||-.|+|||+|++.+...+..+...-+-+
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV 119 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLNEYADEGLRLVEV 119 (287)
T ss_pred ceEEecCCCCChHHHHHHHHHHHHhcCCeEEEE
Confidence 478999999999999999999988877664444
No 193
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.53 E-value=0.00027 Score=58.85 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=30.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|+|++|+|||+|+.+++.....+...++|+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 468899999999999999999988766656677765
No 194
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00099 Score=56.47 Aligned_cols=150 Identities=15% Similarity=0.134 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh-hc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR-LT 82 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-~~ 82 (329)
|-|.++||+|.|||.||+.++..... .|++ ++ -+++... +.++.. -+...+.+. -.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnS-----TFFS----vS----SSDLvSK----WmGESE------kLVknLFemARe 223 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANS-----TFFS----VS----SSDLVSK----WMGESE------KLVKNLFEMARE 223 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCC-----ceEE----ee----hHHHHHH----HhccHH------HHHHHHHHHHHh
Confidence 57899999999999999999876432 2333 21 2222222 222111 022222222 23
Q ss_pred CceEEEEEecCCC---------hhhH----HHHhcccCC---CCCCcEEEEEeCchhHHHhc---CCCeEEEecCCChhh
Q 020206 83 RKKVLIVFDDVNH---------PRQI----EFLIGNLDW---FASGSRILITARDKQALINC---GVNKIYQIKELVHVD 143 (329)
Q Consensus 83 ~~~~LlvlDdv~~---------~~~~----~~l~~~l~~---~~~~~~ilitsr~~~~~~~~---~~~~~~~l~~l~~~e 143 (329)
+++.+|.+|+++. .+.. .+|+..+.. ...|..|+=.|..+-++... +....|-+ ||.+..
T Consensus 224 ~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~ 302 (439)
T KOG0739|consen 224 NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAH 302 (439)
T ss_pred cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHH
Confidence 5788999999942 1122 223333222 22233333344444333221 11122333 566666
Q ss_pred hHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch
Q 020206 144 ALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI 178 (329)
Q Consensus 144 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 178 (329)
|+.-..+...+.. +..-.+...+.+.++++|..-
T Consensus 303 AR~~MF~lhlG~t-p~~LT~~d~~eL~~kTeGySG 336 (439)
T KOG0739|consen 303 ARARMFKLHLGDT-PHVLTEQDFKELARKTEGYSG 336 (439)
T ss_pred HhhhhheeccCCC-ccccchhhHHHHHhhcCCCCc
Confidence 7655555443433 333334458889999988763
No 195
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.52 E-value=0.0013 Score=64.38 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+.++||+|+|||.+|+.+++.+.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999873
No 196
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.52 E-value=0.00028 Score=56.16 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh-cCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~ 38 (329)
.-.+.+.||+|+|||.||+.+++.+. ......+-+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 35788999999999999999999887 4544444444
No 197
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.52 E-value=0.00087 Score=62.68 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=26.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
.+++.++||+|+||||.++.+++.+. +...-|.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 57899999999999999999998763 3334454
No 198
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00083 Score=63.20 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=78.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
++.+.++||+|+|||.||+.++......|-.+..- ++.. ...++ ........+....+
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-------------~l~s----k~vGe-----sek~ir~~F~~A~~ 333 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-------------ELLS----KWVGE-----SEKNIRELFEKARK 333 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-------------HHhc----cccch-----HHHHHHHHHHHHHc
Confidence 45789999999999999999998654332211110 1111 10000 00002222333345
Q ss_pred CceEEEEEecCCCh-------------hhHHHHhcccCCCCC--CcEEEEEeCchhHHHh-----cCCCeEEEecCCChh
Q 020206 83 RKKVLIVFDDVNHP-------------RQIEFLIGNLDWFAS--GSRILITARDKQALIN-----CGVNKIYQIKELVHV 142 (329)
Q Consensus 83 ~~~~LlvlDdv~~~-------------~~~~~l~~~l~~~~~--~~~ilitsr~~~~~~~-----~~~~~~~~l~~l~~~ 142 (329)
..+++|.+|+++.. .....++..+..... +..+|-+|..+..... .+....+.++.-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 67899999999321 223444444432222 3233334433322221 134457888889999
Q ss_pred hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcC
Q 020206 143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQG 175 (329)
Q Consensus 143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g 175 (329)
+..+.|..+......+ -...-....+++.+.|
T Consensus 414 ~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 414 ERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 9999998887322221 0112225666666666
No 199
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.50 E-value=0.00082 Score=66.18 Aligned_cols=136 Identities=16% Similarity=0.179 Sum_probs=68.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.++++||+|+|||++++.+++.....|..+. .++. ....++.... ....+ .........+... .
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~----~~~~---~d~~~i~g~~-~~~~g-----~~~G~~~~~l~~~-~ 414 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA----LGGV---RDEAEIRGHR-RTYIG-----SMPGKLIQKMAKV-G 414 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE----cCCC---CCHHHhccch-hccCC-----CCCcHHHHHHHhc-C
Confidence 467999999999999999999987654432211 1111 1111111100 00000 0111122223222 2
Q ss_pred CceEEEEEecCCChhh------HHHHhcccCCC---------------CCCcEEEEEeCchhHHHh-cCCCeEEEecCCC
Q 020206 83 RKKVLIVFDDVNHPRQ------IEFLIGNLDWF---------------ASGSRILITARDKQALIN-CGVNKIYQIKELV 140 (329)
Q Consensus 83 ~~~~LlvlDdv~~~~~------~~~l~~~l~~~---------------~~~~~ilitsr~~~~~~~-~~~~~~~~l~~l~ 140 (329)
..+.+|+||+++.... ...++..+... -.+..+|.|+....+... .+....+++.+++
T Consensus 415 ~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t 494 (784)
T PRK10787 415 VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYT 494 (784)
T ss_pred CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCC
Confidence 2344789999943211 23443333210 023334445543321111 2344678899999
Q ss_pred hhhhHHHHhhhh
Q 020206 141 HVDALKLLNQCA 152 (329)
Q Consensus 141 ~~e~~~ll~~~~ 152 (329)
.+|-.++.....
T Consensus 495 ~eek~~Ia~~~L 506 (784)
T PRK10787 495 EDEKLNIAKRHL 506 (784)
T ss_pred HHHHHHHHHHhh
Confidence 999998887765
No 200
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.49 E-value=0.0071 Score=52.89 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF 31 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~ 31 (329)
+-|.|.|++|+|||+++++++..+...+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 4689999999999999999999886543
No 201
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.49 E-value=0.00021 Score=55.49 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..+|+|+|.+|+||||||+.+.+.+.+....+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 468999999999999999999999988766666654
No 202
>PRK08233 hypothetical protein; Provisional
Probab=97.48 E-value=0.0001 Score=59.43 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 1 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
|...+|+|.|++|+||||||..++..+.
T Consensus 1 ~~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999998764
No 203
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.48 E-value=0.0012 Score=52.85 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFF 24 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~ 24 (329)
..+++|.|+.|+|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999875
No 204
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.47 E-value=0.0018 Score=62.63 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+-|.|+|++|+|||++++.++......| +.+. .. ++.. .+.... .......+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~---------~~~~----~~~g~~-----~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GS---------DFVE----MFVGVG-----ASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hH---------HhHH----hhhccc-----HHHHHHHHHHHHhc
Confidence 3489999999999999999988754322 1111 11 1111 000000 00012222223334
Q ss_pred ceEEEEEecCCCh----------------hhHHHHhcccCCCC--CCcEEEEEeCchhHHHh-----cCCCeEEEecCCC
Q 020206 84 KKVLIVFDDVNHP----------------RQIEFLIGNLDWFA--SGSRILITARDKQALIN-----CGVNKIYQIKELV 140 (329)
Q Consensus 84 ~~~LlvlDdv~~~----------------~~~~~l~~~l~~~~--~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l~ 140 (329)
.+++|++|+++.. ..+..++..+.... .+..+|.||........ ....+.+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 6889999998432 11233332222111 23334445554432211 1244677888888
Q ss_pred hhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcC
Q 020206 141 HVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQG 175 (329)
Q Consensus 141 ~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g 175 (329)
.++-.+++........ .++.. ...+++.+.|
T Consensus 324 ~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G 355 (644)
T PRK10733 324 VRGREQILKVHMRRVPLAPDID----AAIIARGTPG 355 (644)
T ss_pred HHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCC
Confidence 8888888877653221 11211 4556777766
No 205
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.47 E-value=0.001 Score=60.84 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
.+.+|.++|++|+||||++..++..+......+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 367899999999999999999999887653334443
No 206
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.47 E-value=0.0016 Score=56.11 Aligned_cols=36 Identities=14% Similarity=-0.042 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~ 38 (329)
..++.|.|++|+|||+|+.+++...... -..++|++
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 3578999999999999999999876554 45677766
No 207
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.46 E-value=0.0019 Score=52.84 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+.|-++|.||||+||||=+..+++.+-
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 457789999999999999999988754
No 208
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.45 E-value=0.00078 Score=67.12 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=49.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-chHHHHhhhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLNFQSKRLTR 83 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 83 (329)
.+.++||+|+|||+||+.+++.+-......+-+ ++.+.........+. +. +++.... ....+.+.++.
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~~~l~-------g~---~~gyvg~~~~~~l~~~~~~ 609 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTVSKLI-------GS---PPGYVGYNEGGQLTEAVRK 609 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccHHHhc-------CC---CCcccCcCccchHHHHHHh
Confidence 467999999999999999999764332222222 233332222322221 11 1011111 11233444444
Q ss_pred ce-EEEEEecCC--ChhhHHHHhcccC
Q 020206 84 KK-VLIVFDDVN--HPRQIEFLIGNLD 107 (329)
Q Consensus 84 ~~-~LlvlDdv~--~~~~~~~l~~~l~ 107 (329)
++ .+|+||+++ +++....+++.+.
T Consensus 610 ~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 610 KPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 44 599999996 3455666665544
No 209
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.45 E-value=0.0013 Score=54.17 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=34.0
Q ss_pred chHHHHhhhcCceEEEEEecC---CChhh---HHHHhcccCCCCCCcEEEEEeCchhHHHhc
Q 020206 73 GLNFQSKRLTRKKVLIVFDDV---NHPRQ---IEFLIGNLDWFASGSRILITARDKQALINC 128 (329)
Q Consensus 73 ~~~~l~~~~~~~~~LlvlDdv---~~~~~---~~~l~~~l~~~~~~~~ilitsr~~~~~~~~ 128 (329)
..-.+.+.+...+-+|+.|+- -+.+. +-.++..+. ...+..+|+.|.++..+..+
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhC
Confidence 444566677788889999986 12222 333333322 12366899999999877653
No 210
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.43 E-value=0.00057 Score=58.54 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
++|+|+|.||+||||+|+++.+.+.+.-..+.+++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 68999999999999999999998776444444544
No 211
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.43 E-value=0.00026 Score=61.88 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=30.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+++-|+|++|+|||+||.+++......-..++|+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 468889999999999999999987766666677776
No 212
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.43 E-value=0.0011 Score=51.56 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
++.|+|.+|+||||+++.++..+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999998754
No 213
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.41 E-value=0.00062 Score=54.85 Aligned_cols=120 Identities=13% Similarity=0.176 Sum_probs=60.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHH------HHHHHHHHHhcCCCCCCC-CCc---
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLAD------LRKELLSTLLNDGNMNKF-PNI--- 72 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~-~~~--- 72 (329)
..+++|.|+.|+|||||++.++...... .+.+++.. ..... ..... ...+++..+......... ...
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g-~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDG-KDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECC-EECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 3578999999999999999998765433 33333321 11110 01111 111133333221111011 111
Q ss_pred --chHHHHhhhcCceEEEEEecCC---ChhhHHHHhcccCCC-CC-CcEEEEEeCchhHH
Q 020206 73 --GLNFQSKRLTRKKVLIVFDDVN---HPRQIEFLIGNLDWF-AS-GSRILITARDKQAL 125 (329)
Q Consensus 73 --~~~~l~~~~~~~~~LlvlDdv~---~~~~~~~l~~~l~~~-~~-~~~ilitsr~~~~~ 125 (329)
..-.+.+.+...+-++++|+.- +....+.+...+... .+ +..+|++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2233444555677899999982 333333333333221 22 56788888876544
No 214
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.41 E-value=0.00026 Score=61.86 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=29.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+++.|+|++|+|||||+.+++......-..++|+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 368899999999999999999887766656667765
No 215
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.40 E-value=0.0001 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
|.|+|++|+|||+||..++..+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999877644
No 216
>PTZ00301 uridine kinase; Provisional
Probab=97.40 E-value=0.00018 Score=59.22 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=25.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 1 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
+.+.+|+|.|++|+||||||+.+.+.+...
T Consensus 1 ~~~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CCCEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 356899999999999999999998877543
No 217
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0023 Score=58.47 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
++=|.++||||.|||-||+.++...
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhccc
Confidence 3458899999999999999997653
No 218
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.39 E-value=0.00016 Score=55.76 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+|.+.|++|+||||+|+.++....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 689999999999999999987643
No 219
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.39 E-value=0.00016 Score=54.53 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
|+|.|++|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999885
No 220
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.39 E-value=0.0015 Score=52.22 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
++.++|++|+||||++..++..+.+.-..+..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6789999999999999999998776533344443
No 221
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.38 E-value=0.0003 Score=56.46 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=30.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..+|++.|++|+||||+++.+++.+...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 458999999999999999999999877666666653
No 222
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.38 E-value=0.0017 Score=64.88 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
.+.++|++|+|||++|+.+++.....
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 68899999999999999999876433
No 223
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0027 Score=61.09 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=83.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
+|=|.|+||+|+|||-||+.+|..- .+-|+. ++. .++.+ .+...+.. ...+.+...-.
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~s----vSG----SEFvE----~~~g~~as-----rvr~lf~~ar~ 401 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS----VSG----SEFVE----MFVGVGAS-----RVRDLFPLARK 401 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhccc-----CCceee----ech----HHHHH----HhcccchH-----HHHHHHHHhhc
Confidence 4558899999999999999998763 233333 111 11111 11111100 01222333334
Q ss_pred CceEEEEEecCCCh-----------------hhHHHHhcccCCCCC-CcEEEE-EeCchhHHHh-----cCCCeEEEecC
Q 020206 83 RKKVLIVFDDVNHP-----------------RQIEFLIGNLDWFAS-GSRILI-TARDKQALIN-----CGVNKIYQIKE 138 (329)
Q Consensus 83 ~~~~LlvlDdv~~~-----------------~~~~~l~~~l~~~~~-~~~ili-tsr~~~~~~~-----~~~~~~~~l~~ 138 (329)
+.+++|.+|+++.. +.+..++..+..... +..|++ +|....++.. .+..+.+.++.
T Consensus 402 ~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~ 481 (774)
T KOG0731|consen 402 NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDL 481 (774)
T ss_pred cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccC
Confidence 56899999988421 123444333322222 223444 4433322221 23456778888
Q ss_pred CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHH
Q 020206 139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIAL 180 (329)
Q Consensus 139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 180 (329)
-+...-.++|.-++..-... .+..+ ..+++..+-|++-|.
T Consensus 482 p~~~~r~~i~~~h~~~~~~~-~e~~d-l~~~a~~t~gf~gad 521 (774)
T KOG0731|consen 482 PDVKGRASILKVHLRKKKLD-DEDVD-LSKLASLTPGFSGAD 521 (774)
T ss_pred CchhhhHHHHHHHhhccCCC-cchhh-HHHHHhcCCCCcHHH
Confidence 88888888888777433332 23344 444999999988764
No 224
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.0055 Score=55.25 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
.-+=|.|.+|.|||.+...++.+....... ++++. ...-.....++..|...+......+.........+....
T Consensus 176 gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in----c~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~ 251 (529)
T KOG2227|consen 176 GSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN----CTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHT 251 (529)
T ss_pred cceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe----eccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 345689999999999999998877655443 34544 222234445555555555222221122222333333333
Q ss_pred cC--ceEEEEEecCCChhh--HHHHhcccCC-CCCCcEEEEEe---------CchhHHHh--cCCCeEEEecCCChhhhH
Q 020206 82 TR--KKVLIVFDDVNHPRQ--IEFLIGNLDW-FASGSRILITA---------RDKQALIN--CGVNKIYQIKELVHVDAL 145 (329)
Q Consensus 82 ~~--~~~LlvlDdv~~~~~--~~~l~~~l~~-~~~~~~ilits---------r~~~~~~~--~~~~~~~~l~~l~~~e~~ 145 (329)
.+ ..+|+|+|+.+.... -..+...+.+ --+++++|+.. |--.-+.. .-....+..++.+.++..
T Consensus 252 ~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~ 331 (529)
T KOG2227|consen 252 KQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIV 331 (529)
T ss_pred hcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHH
Confidence 33 368999999853211 1111111111 01344443322 11111111 123457888999999999
Q ss_pred HHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhc
Q 020206 146 KLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLF 188 (329)
Q Consensus 146 ~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 188 (329)
+++..+.. ...........+..+++++.|..--+..+....+
T Consensus 332 ~Il~~rl~-~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 332 EILQQRLS-EESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHHHHHh-cccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 99999883 3333334445678888888888887777776665
No 225
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.36 E-value=0.0026 Score=50.53 Aligned_cols=57 Identities=9% Similarity=0.097 Sum_probs=36.5
Q ss_pred chHHHHhhhcCceEEEEEecC---CChhhHHHHhcccCC-CCCCcEEEEEeCchhHHHhcC
Q 020206 73 GLNFQSKRLTRKKVLIVFDDV---NHPRQIEFLIGNLDW-FASGSRILITARDKQALINCG 129 (329)
Q Consensus 73 ~~~~l~~~~~~~~~LlvlDdv---~~~~~~~~l~~~l~~-~~~~~~ilitsr~~~~~~~~~ 129 (329)
....+.+..-+++-+++-|+- -+++....++..+.. +..|..|+++|.+......+.
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 334555667788999999976 134433334443332 245888999999997766653
No 226
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.35 E-value=0.00083 Score=56.22 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~ 38 (329)
..++.|+|++|+|||+|+.+++....... ..++|+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 46889999999999999999988765444 5566766
No 227
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.35 E-value=0.0013 Score=65.90 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+.++||+|+|||++|+.+++.....
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 357899999999999999999976543
No 228
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.34 E-value=0.00022 Score=58.27 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
+|+|.|++|+||||||+.++..+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999988754
No 229
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.003 Score=52.36 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
+|=|.++||+|+|||.|++.+++.....
T Consensus 189 prgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 189 PRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred CcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 4668899999999999999998875543
No 230
>PRK09354 recA recombinase A; Provisional
Probab=97.32 E-value=0.00044 Score=60.96 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=30.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
-+++-|+|++|+|||+|+.+++......-...+|+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 368889999999999999999987766666777776
No 231
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0094 Score=57.00 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=40.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCce
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK 85 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (329)
|.+|||+|+|||-+|+.+|..+.=. |++. ..+ +++....++. +....+.+.+.-...+
T Consensus 708 ILLYGPPGTGKTLlAKAVATEcsL~-----FlSV-------KGP-----ELLNMYVGqS-----E~NVR~VFerAR~A~P 765 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATECSLN-----FLSV-------KGP-----ELLNMYVGQS-----EENVREVFERARSAAP 765 (953)
T ss_pred eEEECCCCCchHHHHHHHHhhceee-----EEee-------cCH-----HHHHHHhcch-----HHHHHHHHHHhhccCC
Confidence 7899999999999999998876422 3331 111 1222211211 1113334444445589
Q ss_pred EEEEEecCCC
Q 020206 86 VLIVFDDVNH 95 (329)
Q Consensus 86 ~LlvlDdv~~ 95 (329)
|+|.||++++
T Consensus 766 CVIFFDELDS 775 (953)
T KOG0736|consen 766 CVIFFDELDS 775 (953)
T ss_pred eEEEeccccc
Confidence 9999999954
No 232
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.31 E-value=0.0013 Score=52.02 Aligned_cols=119 Identities=13% Similarity=0.009 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCC-----CCCCCc------
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNM-----NKFPNI------ 72 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~------ 72 (329)
..|.|++..|.||||.|.-.+-+...+-..++.+-...+.. ...-...++.+.-.+...+.. ......
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~-~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW-PNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc-ccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 46788888999999999999887665544444333222211 112222222220000000000 000000
Q ss_pred chHHHHhhhcCc-eEEEEEecCC-----ChhhHHHHhcccCCCCCCcEEEEEeCchh
Q 020206 73 GLNFQSKRLTRK-KVLIVFDDVN-----HPRQIEFLIGNLDWFASGSRILITARDKQ 123 (329)
Q Consensus 73 ~~~~l~~~~~~~-~~LlvlDdv~-----~~~~~~~l~~~l~~~~~~~~ilitsr~~~ 123 (329)
..+...+.+... -=++|||++- ..-..++++..+...+++..+|+|.|+.+
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 222223333333 3499999982 22223333333444466778999999874
No 233
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0033 Score=56.18 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF 31 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~ 31 (329)
..++.++|++|+||||++.+++..+...+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 46899999999999999999998865443
No 234
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.31 E-value=0.00023 Score=57.69 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
++++|+|.|++|+||||+++.+++.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998875
No 235
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.002 Score=57.34 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..+++.|+|+.|+||||++..++..+..+...+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3578999999999999999999987755544455554
No 236
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.30 E-value=0.0017 Score=52.71 Aligned_cols=55 Identities=11% Similarity=0.185 Sum_probs=36.3
Q ss_pred hHHHHhhhcCceEEEEEecC---CChhhHHHHhcccCCC-CCCcEEEEEeCchhHHHhc
Q 020206 74 LNFQSKRLTRKKVLIVFDDV---NHPRQIEFLIGNLDWF-ASGSRILITARDKQALINC 128 (329)
Q Consensus 74 ~~~l~~~~~~~~~LlvlDdv---~~~~~~~~l~~~l~~~-~~~~~ilitsr~~~~~~~~ 128 (329)
.-.+.+.+.-++-++.+|+. -+++...+++..+... ..|-..++.|.+...+...
T Consensus 144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 34555666777889999998 3566666665554432 3466778888887666654
No 237
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.30 E-value=0.00025 Score=47.24 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+++|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 238
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.30 E-value=0.0032 Score=50.00 Aligned_cols=31 Identities=13% Similarity=0.024 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
++.|.|++|+|||++|.+++.. ....++|+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a 31 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIA 31 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEE
Confidence 3689999999999999999876 223455554
No 239
>PF13245 AAA_19: Part of AAA domain
Probab=97.30 E-value=0.00043 Score=46.96 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.++++|.|++|+|||+++.+.+..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5778899999999996666665543
No 240
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.29 E-value=0.00074 Score=58.04 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
+.+++.++|++|+||||++..++..+......+.++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3578999999999999999999988866544454443
No 241
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0015 Score=58.80 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
++++|.++|+.|+||||.+.+++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998765
No 242
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.29 E-value=0.00068 Score=60.53 Aligned_cols=100 Identities=20% Similarity=0.334 Sum_probs=53.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+=+=|||+.|.|||.|+-.+++.+..+....+.++ ++..++-+.+..... ....+..+.+.+.+
T Consensus 63 ~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh------------~Fm~~vh~~l~~~~~----~~~~l~~va~~l~~ 126 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH------------EFMLDVHSRLHQLRG----QDDPLPQVADELAK 126 (362)
T ss_pred ceEEEECCCCCchhHHHHHHHHhCCcccccccccc------------HHHHHHHHHHHHHhC----CCccHHHHHHHHHh
Confidence 34669999999999999999987643222222222 222222222222110 11124444555666
Q ss_pred ceEEEEEecCC--Chhh---HHHHhcccCCCCCCcEEEEEeCch
Q 020206 84 KKVLIVFDDVN--HPRQ---IEFLIGNLDWFASGSRILITARDK 122 (329)
Q Consensus 84 ~~~LlvlDdv~--~~~~---~~~l~~~l~~~~~~~~ilitsr~~ 122 (329)
+..||.||++. +..+ +..++..+. ..|. ++|+|.|.
T Consensus 127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 127 ESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred cCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 66799999983 3332 444444433 3455 45555444
No 243
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.28 E-value=0.00064 Score=56.18 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=30.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|+|++|+|||+|+.+++.........++|+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 468899999999999999999988766666788877
No 244
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.28 E-value=0.0032 Score=65.96 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
++=|.++||+|+|||.||+.+|...
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999999864
No 245
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.27 E-value=0.0012 Score=57.28 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC-C-CceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-F-EGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~-~~~~~~~ 38 (329)
.+++.|+|++|+||||++..++..+..+ . ..+.++.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 5689999999999999999999887644 2 3344443
No 246
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.27 E-value=0.0033 Score=50.51 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+++|.|+.|+|||||++.++....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 5789999999999999999987643
No 247
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.27 E-value=0.0017 Score=55.41 Aligned_cols=52 Identities=31% Similarity=0.430 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELL 57 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 57 (329)
..+.|.|.+|+|||+|+.+++...+.+|...+++.-.++- .....++++.+.
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer--~~Ev~e~~~~~~ 121 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER--TREGNDLYHEMK 121 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHH
Confidence 4578999999999999999999988777776666533221 223444555443
No 248
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.26 E-value=0.0035 Score=59.25 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.-|.|+|++|+|||++|+.+++..
T Consensus 87 ~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 87 QHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999998754
No 249
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.26 E-value=0.0011 Score=56.76 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
.++.|.|+.|+||||++..+...+......++.+.+..+..-. .+ .++.... .......+.+...++.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~----~~-----~q~~v~~---~~~~~~~~~l~~~lR~ 148 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP----GI-----NQVQVNE---KAGLTFARGLRAILRQ 148 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC----Cc-----eEEEeCC---cCCcCHHHHHHHHhcc
Confidence 4799999999999999999888765432333443322221110 00 0110000 1111245666667777
Q ss_pred ceEEEEEecCCChhhHHHHhcc
Q 020206 84 KKVLIVFDDVNHPRQIEFLIGN 105 (329)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~l~~~ 105 (329)
.+-.|+++++.+.+....++..
T Consensus 149 ~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 149 DPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CCCEEEeccCCCHHHHHHHHHH
Confidence 8889999999988876655544
No 250
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0027 Score=50.29 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
-.+.|.|+.|+|||||.+.++.-.+..-..+.|-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~ 62 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence 3678999999999999999998666555555554
No 251
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00065 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.|.|.|++|+||||+|+.+++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999984
No 252
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.26 E-value=0.0026 Score=58.39 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
-|.|.|++|+|||++|+.++......
T Consensus 41 hVLL~GpPGTGKT~LAraLa~~~~~~ 66 (498)
T PRK13531 41 SVFLLGPPGIAKSLIARRLKFAFQNA 66 (498)
T ss_pred CEEEECCCChhHHHHHHHHHHHhccc
Confidence 47899999999999999999876543
No 253
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.26 E-value=0.0011 Score=55.62 Aligned_cols=123 Identities=19% Similarity=0.186 Sum_probs=67.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhh--cCChHHHHHHHHHHHhcCCC-CCCCCCc------c
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE--TGKLADLRKELLSTLLNDGN-MNKFPNI------G 73 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~-~~~~~~~------~ 73 (329)
..+++|+|.+|+||||+++.+..-..-....+.|-- .+... .....+.+.+++...+.... ....+.. .
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g--~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG--KDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC--cchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 457899999999999999999886654444444321 11111 12233334445555442211 0111111 2
Q ss_pred hHHHHhhhcCceEEEEEecCCC------hhhHHHHhcccCCCCCCcEEEEEeCchhHHHhc
Q 020206 74 LNFQSKRLTRKKVLIVFDDVNH------PRQIEFLIGNLDWFASGSRILITARDKQALINC 128 (329)
Q Consensus 74 ~~~l~~~~~~~~~LlvlDdv~~------~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~ 128 (329)
.-.+.+.+.-++-+||.|+.-+ ..++..++..+.. ..+...++.|.+-.+....
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 3344556667888999998722 1233334333321 2366778888887666554
No 254
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.25 E-value=0.0014 Score=55.26 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC------CCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~ 38 (329)
..++.|+|++|+|||+|+.+++...... ...++|+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3688999999999999999998654322 25677776
No 255
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.0014 Score=54.42 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
-.|+|.|++|+|||||.+-++.
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999985
No 256
>PRK06696 uridine kinase; Validated
Probab=97.24 E-value=0.00049 Score=57.50 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
.+.+|+|.|++|+||||||+.+++.+...
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999987644
No 257
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0019 Score=53.86 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
+=|.++||+|.|||-+|+.++++. ..+|+.
T Consensus 212 kgvllygppgtgktl~aravanrt-----dacfir 241 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCARAVANRT-----DACFIR 241 (435)
T ss_pred CceEEeCCCCCchhHHHHHHhccc-----CceEEe
Confidence 447899999999999999998773 345555
No 258
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.23 E-value=0.00088 Score=54.18 Aligned_cols=34 Identities=26% Similarity=0.188 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+.|.|++|+|||+|+.+++......-..++|++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3689999999999999999887665556677765
No 259
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.22 E-value=0.0014 Score=58.81 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.++.|.|++|+|||||+.+++.........++|+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 58899999999999999999988776555666765
No 260
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.22 E-value=0.00059 Score=54.01 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=58.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
...++|.|+.|+|||||.+.++..... ..+.+++.. ..... ....+... ......... +......-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g-~~~~~-~~~~~~~~---~~i~~~~qL-S~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDG-KEVSF-ASPRDARR---AGIAMVYQL-SVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECC-EECCc-CCHHHHHh---cCeEEEEec-CHHHHHHHHHHHHHh
Confidence 357899999999999999999875432 233344331 11110 11111110 011100000 000112233444455
Q ss_pred CceEEEEEecCC---ChhhHHHHhcccCCC-CCCcEEEEEeCchhHHH
Q 020206 83 RKKVLIVFDDVN---HPRQIEFLIGNLDWF-ASGSRILITARDKQALI 126 (329)
Q Consensus 83 ~~~~LlvlDdv~---~~~~~~~l~~~l~~~-~~~~~ilitsr~~~~~~ 126 (329)
..+-++++|+.. +....+.+...+... .++..+|++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 677799999983 333333333333221 23667888888875443
No 261
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.20 E-value=0.00046 Score=55.76 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.|+++|+||+|+|||||+..+++.....|...+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 588999999999999999999999888887666654
No 262
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.20 E-value=0.00037 Score=57.58 Aligned_cols=26 Identities=31% Similarity=0.578 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
...+|+|.|++|+|||||++.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999876
No 263
>PRK04040 adenylate kinase; Provisional
Probab=97.20 E-value=0.00043 Score=56.06 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+|+|+|++|+||||+++.+++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998874
No 264
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.19 E-value=0.00033 Score=55.61 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
++|+|++|+|||||++.+++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~ 26 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKK 26 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHhhcc
Confidence 7899999999999999999988643
No 265
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.19 E-value=0.0012 Score=62.33 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=79.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+++.++|++|.||||||.-+|+... ..++=+. ++..-+...+-..|...+...... -..
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaG---YsVvEIN----ASDeRt~~~v~~kI~~avq~~s~l-------------~ad 385 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAG---YSVVEIN----ASDERTAPMVKEKIENAVQNHSVL-------------DAD 385 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcC---ceEEEec----ccccccHHHHHHHHHHHHhhcccc-------------ccC
Confidence 47899999999999999999987632 1233333 333344444444444444333221 023
Q ss_pred CceEEEEEecCCCh--hhHHHHhcccCC------CCCC--------------c-EEEEEeCch--hHHHhcC-CCeEEEe
Q 020206 83 RKKVLIVFDDVNHP--RQIEFLIGNLDW------FASG--------------S-RILITARDK--QALINCG-VNKIYQI 136 (329)
Q Consensus 83 ~~~~LlvlDdv~~~--~~~~~l~~~l~~------~~~~--------------~-~ilitsr~~--~~~~~~~-~~~~~~l 136 (329)
.++.-+|+|+++.. ..++.++..+.. ..++ + .||....+- +.+..+. ....+.+
T Consensus 386 srP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f 465 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAF 465 (877)
T ss_pred CCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEe
Confidence 57888999999643 223333332220 0111 1 234344333 2222222 3345666
Q ss_pred cCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 020206 137 KELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP 177 (329)
Q Consensus 137 ~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 177 (329)
.+-+..-.++=+...+-... .......+..+++.|.+--
T Consensus 466 ~~p~~s~Lv~RL~~IC~rE~--mr~d~~aL~~L~el~~~DI 504 (877)
T KOG1969|consen 466 VPPSQSRLVERLNEICHREN--MRADSKALNALCELTQNDI 504 (877)
T ss_pred cCCChhHHHHHHHHHHhhhc--CCCCHHHHHHHHHHhcchH
Confidence 66555555555555442211 1222345777788877643
No 266
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.19 E-value=0.0019 Score=51.78 Aligned_cols=119 Identities=15% Similarity=0.065 Sum_probs=61.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHh----cCC--CCCCCCCc----
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL----NDG--NMNKFPNI---- 72 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~--~~~~~~~~---- 72 (329)
...|.|+|..|-||||.|.-.+-+...+-..+..+-.+.+.. ...-..+++.+ ..+. ..+ ......+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHHH
Confidence 357899999999999999999887665544444443333221 11222222221 0010 000 00000000
Q ss_pred ---chHHHHhhhcC-ceEEEEEecCC-----ChhhHHHHhcccCCCCCCcEEEEEeCchh
Q 020206 73 ---GLNFQSKRLTR-KKVLIVFDDVN-----HPRQIEFLIGNLDWFASGSRILITARDKQ 123 (329)
Q Consensus 73 ---~~~~l~~~~~~-~~~LlvlDdv~-----~~~~~~~l~~~l~~~~~~~~ilitsr~~~ 123 (329)
..+...+.+.. .-=++|||++- ..-..++++..+...+.+..+|+|.|+.+
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12222333333 33499999982 22223334444444466778999999874
No 267
>PRK14531 adenylate kinase; Provisional
Probab=97.19 E-value=0.0015 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+.|+|.|++|+||||+++.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998875
No 268
>PRK14528 adenylate kinase; Provisional
Probab=97.16 E-value=0.0018 Score=52.40 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+.++|.|++|+||||+++.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998775
No 269
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0019 Score=57.27 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
-++.|-|.||+|||||..+++.++.... .+.|++
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs 127 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS 127 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe
Confidence 4788999999999999999999988766 677765
No 270
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.16 E-value=0.00067 Score=52.08 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC-CceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF-EGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~ 38 (329)
|+|.|+|+.|+|||||++.+++.+.++- ...++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 6899999999999999999999887554 3333444
No 271
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=97.16 E-value=0.00068 Score=59.30 Aligned_cols=46 Identities=30% Similarity=0.395 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLR 53 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (329)
|++++.|-||+||||+|...+-...++-..+..++ .++.+++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS----~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS----TDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE----SSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee----cCCCccHHHHh
Confidence 78999999999999999999988877655666665 44444444444
No 272
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.15 E-value=0.012 Score=54.26 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+.+++.|+||+|+||||.++.++..+
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhh
Confidence 46899999999999999999998764
No 273
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.15 E-value=0.00025 Score=52.73 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCce
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISRRFEGS 34 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~ 34 (329)
|.|.|.+|+|||++|+.++......|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999887776543
No 274
>PRK07667 uridine kinase; Provisional
Probab=97.14 E-value=0.00081 Score=54.81 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+|+|.|++|+||||+|..+++.+...
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3689999999999999999999987654
No 275
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.14 E-value=0.0018 Score=53.81 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988753
No 276
>PRK06547 hypothetical protein; Provisional
Probab=97.14 E-value=0.00049 Score=54.82 Aligned_cols=26 Identities=35% Similarity=0.449 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
...+|.|.|++|+||||++..+++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998874
No 277
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.0021 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+++|.|+.|+|||||.+.++....
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5789999999999999999987654
No 278
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.13 E-value=0.0013 Score=56.31 Aligned_cols=36 Identities=28% Similarity=0.236 Sum_probs=32.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+++.|+|++|+|||+++.+++....+....++|+.
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 468999999999999999999998888877788876
No 279
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.13 E-value=0.013 Score=50.87 Aligned_cols=149 Identities=16% Similarity=0.083 Sum_probs=76.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhh--hcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAE--ETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
..-|.+.||.|+|||.|......+ .+.+.-.+..+...+.- ++..+..+.+++...+.........-......+...
T Consensus 49 snsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~ 127 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEA 127 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHH
Confidence 446889999999999999988777 44444444444332221 222334444444443332211111111122233333
Q ss_pred hc------CceEEEEEecCCCh--h----hHHHHhcccCC-CCCCcEEEEEeCchhHHH-------hcCCCeEEEecCCC
Q 020206 81 LT------RKKVLIVFDDVNHP--R----QIEFLIGNLDW-FASGSRILITARDKQALI-------NCGVNKIYQIKELV 140 (329)
Q Consensus 81 ~~------~~~~LlvlDdv~~~--~----~~~~l~~~l~~-~~~~~~ilitsr~~~~~~-------~~~~~~~~~l~~l~ 140 (329)
++ ..++++|+|+++-- . .+=.++..... ..+-|.+-+|||-..... .+....++-++.++
T Consensus 128 L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~ 207 (408)
T KOG2228|consen 128 LKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLP 207 (408)
T ss_pred HhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCC
Confidence 32 24689999988421 1 11111111111 133445567888642211 12233355667788
Q ss_pred hhhhHHHHhhhh
Q 020206 141 HVDALKLLNQCA 152 (329)
Q Consensus 141 ~~e~~~ll~~~~ 152 (329)
-++-+.++++..
T Consensus 208 l~~yv~l~r~ll 219 (408)
T KOG2228|consen 208 LGDYVDLYRKLL 219 (408)
T ss_pred hHHHHHHHHHHh
Confidence 888899988876
No 280
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.13 E-value=0.00048 Score=55.23 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.++++++|++|+||||+|+.+++...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46899999999999999999988753
No 281
>PRK10867 signal recognition particle protein; Provisional
Probab=97.12 E-value=0.0045 Score=56.60 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
+.+|.++|++|+||||.+..++..+..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 5789999999999999999999887665
No 282
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.12 E-value=0.00051 Score=56.67 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
...+|+|.|++|+|||||++.++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999988764
No 283
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.12 E-value=0.00093 Score=52.11 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=18.7
Q ss_pred EEcCCCCcHHHHHHHHHHHH
Q 020206 8 IWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 8 I~G~~GiGKTtLa~~~~~~~ 27 (329)
|.|+||+||||+|+.+++++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999986
No 284
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.11 E-value=0.00057 Score=56.57 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
.++++|+|+.|.|||||.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38899999999999999999985
No 285
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.0043 Score=52.07 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=34.9
Q ss_pred chHHHHhhhcCceEEEEEecCC---C---hhhHHHHhcccCCCCCCcEEEEEeCchhHHHh
Q 020206 73 GLNFQSKRLTRKKVLIVFDDVN---H---PRQIEFLIGNLDWFASGSRILITARDKQALIN 127 (329)
Q Consensus 73 ~~~~l~~~~~~~~~LlvlDdv~---~---~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~ 127 (329)
....+.+.+.+.+=|++||+-. + ...+-.++..+. ..|+.||+.|.+-.....
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 3456667788888999999862 2 233444555544 338889999998755443
No 286
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.11 E-value=0.00069 Score=54.48 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
+|+|.|.+|+||||||..+++.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999987644
No 287
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.11 E-value=0.0022 Score=49.53 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
..+++|.|+.|+|||||++.++...... .+.+++.....+.-... . +......-.+.+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~~~i~~~~~-----------------l-S~G~~~rv~laral~ 86 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGSTVKIGYFEQ-----------------L-SGGEKMRLALAKLLL 86 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCeEEEEEEcc-----------------C-CHHHHHHHHHHHHHh
Confidence 3578999999999999999987754322 33344331000000000 0 001112223344455
Q ss_pred CceEEEEEecCC---ChhhHHHHhcccCCCCCCcEEEEEeCchhHHH
Q 020206 83 RKKVLIVFDDVN---HPRQIEFLIGNLDWFASGSRILITARDKQALI 126 (329)
Q Consensus 83 ~~~~LlvlDdv~---~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~ 126 (329)
.++-++++|+.. +......+...+... +..+|++|.+.....
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 567799999983 333333333333222 346788887765443
No 288
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.11 E-value=0.0049 Score=56.49 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh--cCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS--RRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~--~~~~~~~~~~ 38 (329)
.+++.++|++|+||||++..++..+. .....+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999988775 3333455544
No 289
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.11 E-value=0.0009 Score=65.78 Aligned_cols=24 Identities=25% Similarity=0.057 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+.++|+||.|.|||||.+.++..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 478999999999999999999765
No 290
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.032 Score=48.15 Aligned_cols=119 Identities=8% Similarity=-0.023 Sum_probs=65.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC-------------CCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-------------FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKF 69 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 69 (329)
+....++|+.|+||+++|..++..+-.. ++...++... +......+. -.+.+...+...
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~-~~~~~I~id-qiR~l~~~~~~~------ 90 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQ-GKGRLHSIE-TPRAIKKQIWIH------ 90 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecC-CCCCcCcHH-HHHHHHHHHhhC------
Confidence 4577899999999999999999875321 2333332100 000000111 111111111111
Q ss_pred CCcchHHHHhhhcCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCC
Q 020206 70 PNIGLNFQSKRLTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKEL 139 (329)
Q Consensus 70 ~~~~~~~l~~~~~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l 139 (329)
-..+..=++|+|+++ +.+....++..+.+.+++..+|++|.+. .+++. .+..+.+.+.++
T Consensus 91 ----------p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 91 ----------PYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred ----------ccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 011334488889985 5567888888887767777776666654 33333 234556777765
No 291
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.10 E-value=0.0038 Score=50.78 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
.++.|.|++|+|||+++.+++..+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987654
No 292
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00044 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+|.|.|++|+||||+++.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998764
No 293
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.051 Score=47.35 Aligned_cols=130 Identities=9% Similarity=0.124 Sum_probs=78.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc---------CCC-ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR---------RFE-GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI 72 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 72 (329)
.++..++|+.|+||++++..+++.+-. ..+ ...++. .. .......++. ++...+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~--g~~i~vd~Ir-~l~~~~~~~~-------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IF--DKDLSKSEFL-SAINKLYFSS-------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cC--CCcCCHHHHH-HHHHHhccCC--------
Confidence 467889999999999999999998621 122 222221 00 0112222222 2222221111
Q ss_pred chHHHHhhhcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHH
Q 020206 73 GLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLL 148 (329)
Q Consensus 73 ~~~~l~~~~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll 148 (329)
...+.+=++|+|+++. ......++..+.+.++++.+|++|.+. .+... ....+.+++.++++++..+.+
T Consensus 86 -------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l 158 (299)
T PRK07132 86 -------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL 158 (299)
T ss_pred -------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHH
Confidence 0113455888888854 345677888877767777777666543 33332 345678999999999999888
Q ss_pred hhh
Q 020206 149 NQC 151 (329)
Q Consensus 149 ~~~ 151 (329)
...
T Consensus 159 ~~~ 161 (299)
T PRK07132 159 LSK 161 (299)
T ss_pred HHc
Confidence 654
No 294
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.09 E-value=0.0042 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+++|.|+.|+|||||++.++...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998754
No 295
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.09 E-value=0.00053 Score=54.75 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.|+|+|++|+||||+++.+++.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999986
No 296
>PRK03839 putative kinase; Provisional
Probab=97.09 E-value=0.00049 Score=55.41 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999864
No 297
>PRK06217 hypothetical protein; Validated
Probab=97.08 E-value=0.0028 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.|+|.|.+|+||||+++++++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998763
No 298
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.08 E-value=0.0055 Score=51.79 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+..|.|++|+|||+|+.+++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999987653
No 299
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.08 E-value=0.0043 Score=51.15 Aligned_cols=25 Identities=24% Similarity=0.237 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.|+.|+|||||++.++...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999988743
No 300
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.08 E-value=0.00087 Score=54.24 Aligned_cols=21 Identities=19% Similarity=-0.072 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~ 25 (329)
++.|+|+.|.||||+.+.++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999984
No 301
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.07 E-value=0.0024 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
|+|.|++|+||||+|+.+++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998765
No 302
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.07 E-value=0.0054 Score=52.54 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhc--CCCC-C--CC-CCc-chHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLN--DGNM-N--KF-PNI-GLNF 76 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~--~~-~~~-~~~~ 76 (329)
+-++|.|++|+|||||.+.++..+.... +.+++. ...+.......++ ...... +... . +. .+. ...-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~-G~i~~~-g~~v~~~d~~~ei----~~~~~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI-SQLGLR-GKKVGIVDERSEI----AGCVNGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC-ceEEEC-CEEeecchhHHHH----HHHhcccccccccccccccccchHHHH
Confidence 5689999999999999999998765442 233332 1111110111122 211111 1000 0 00 000 1111
Q ss_pred HHhhhc-CceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhH
Q 020206 77 QSKRLT-RKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQA 124 (329)
Q Consensus 77 l~~~~~-~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~ 124 (329)
+..... ..+-++++|++...+.+..++..+. .|..+|+||.+...
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 222222 3677999999987777776766643 47789999987544
No 303
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.06 E-value=0.0013 Score=52.70 Aligned_cols=115 Identities=14% Similarity=0.097 Sum_probs=58.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEecc--chhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNV--REAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
..+++|.|+.|+|||||++.++...... .+.+++... .-..+... . +......-.+.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~q~~~-----------------L-SgGq~qrv~lara 85 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGITPVYKPQYID-----------------L-SGGELQRVAIAAA 85 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCEEEEEEcccCC-----------------C-CHHHHHHHHHHHH
Confidence 3578999999999999999988754332 223333210 00000000 0 0000122233444
Q ss_pred hcCceEEEEEecCC---ChhhHHHHhcccCCC-CC-CcEEEEEeCchhHHHhcCCCeEEEec
Q 020206 81 LTRKKVLIVFDDVN---HPRQIEFLIGNLDWF-AS-GSRILITARDKQALINCGVNKIYQIK 137 (329)
Q Consensus 81 ~~~~~~LlvlDdv~---~~~~~~~l~~~l~~~-~~-~~~ilitsr~~~~~~~~~~~~~~~l~ 137 (329)
+..++-++++|+.- +......+...+... .. +..+|++|.+........ .+.+.+.
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~-d~i~~l~ 146 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS-DRIHVFE 146 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC-CEEEEEc
Confidence 55567799999972 333333332222211 22 356888888775544322 2344444
No 304
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.00086 Score=54.76 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
+.+|+|.|.+|+||||+|+.+++.+...
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 4799999999999999999999988755
No 305
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.04 E-value=0.0021 Score=59.44 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|.|++|+|||||+.+++.........++|++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 357899999999999999999987765545566765
No 306
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.03 E-value=0.0033 Score=49.89 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=56.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEec---cchhhhcCC--hHHHHHHHHHHHhcCCCCCCCCCc--chH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHN---VREAEETGK--LADLRKELLSTLLNDGNMNKFPNI--GLN 75 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~--~~~ 75 (329)
...++|.|+.|+|||||++.++...... .+.+++.. ..-+.+... ...+.+.+... .......- ..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~-----~~~~LS~G~~~rv 100 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP-----WDDVLSGGEQQRL 100 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc-----CCCCCCHHHHHHH
Confidence 3578999999999999999998764332 22222211 000111111 11222222110 01011111 223
Q ss_pred HHHhhhcCceEEEEEecCC---ChhhHHHHhcccCCCCCCcEEEEEeCchhHH
Q 020206 76 FQSKRLTRKKVLIVFDDVN---HPRQIEFLIGNLDWFASGSRILITARDKQAL 125 (329)
Q Consensus 76 ~l~~~~~~~~~LlvlDdv~---~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~ 125 (329)
.+.+.+..++-++++|+.- +......+...+... +..+|++|.+....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 3444455677799999972 333333333333222 35678888776543
No 307
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0074 Score=54.57 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..++.|+|++|+||||++.+++..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999765
No 308
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.03 E-value=0.0089 Score=47.55 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.|.|++|+|||++|.+++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999998775
No 309
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.02 E-value=0.0013 Score=57.62 Aligned_cols=49 Identities=29% Similarity=0.279 Sum_probs=38.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 55 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (329)
.|+++++|-||+||||.|...+-...+....+..++ .++.+++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS----tDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS----TDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE----eCCCCchHhhhcc
Confidence 589999999999999999999888777665566665 5556666666543
No 310
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.02 E-value=0.0012 Score=52.26 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..++++|+|++|+|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999887653
No 311
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.02 E-value=0.0018 Score=58.06 Aligned_cols=95 Identities=14% Similarity=0.056 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCC--ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE--GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
..+.|+|+.|+||||++..++..+....+ .++-+-+..+..-.. ...+.. ..+ .............++..+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~-~~~~~~--~~q----~evg~~~~~~~~~l~~aL 222 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGS-PDDLLP--PAQ----SQIGRDVDSFANGIRLAL 222 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCC-Cceeec--ccc----cccCCCccCHHHHHHHhh
Confidence 36889999999999999999887754332 233332221211000 000000 000 000001112445667778
Q ss_pred cCceEEEEEecCCChhhHHHHhcc
Q 020206 82 TRKKVLIVFDDVNHPRQIEFLIGN 105 (329)
Q Consensus 82 ~~~~~LlvlDdv~~~~~~~~l~~~ 105 (329)
+..+=.|+++++.+.+.+...+..
T Consensus 223 R~~PD~I~vGEiRd~et~~~al~a 246 (372)
T TIGR02525 223 RRAPKIIGVGEIRDLETFQAAVLA 246 (372)
T ss_pred ccCCCEEeeCCCCCHHHHHHHHHH
Confidence 888889999999988887765544
No 312
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.01 E-value=0.0032 Score=52.59 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
-.|+|.|++|+||||+|+.+++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999998875
No 313
>PLN02200 adenylate kinase family protein
Probab=97.00 E-value=0.00074 Score=56.73 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.+++|.|++|+||||+++.+++.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 314
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.00 E-value=0.003 Score=50.50 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+++|.|+.|+|||||.+.++....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 35789999999999999999987654
No 315
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.00 E-value=0.0013 Score=52.69 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
..+++|.|++|+||||+++.++..+......+.++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999999999876443333343
No 316
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.99 E-value=0.0026 Score=58.76 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|.|++|+|||||+.+++.....+...++|+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 358899999999999999999988765545567765
No 317
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.99 E-value=0.00075 Score=55.01 Aligned_cols=27 Identities=41% Similarity=0.463 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 1 MDTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+...+++|.|.+|+||||+++.+++++
T Consensus 1 ~~~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 1 MESTIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999998874
No 318
>PRK00625 shikimate kinase; Provisional
Probab=96.99 E-value=0.00068 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.|+|+|++|+||||+++.+++.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988864
No 319
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.98 E-value=0.0033 Score=55.11 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh------cCCCceEEEeccchhhhcCChHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS------RRFEGSYFAHNVREAEETGKLADLRKELLSTL 60 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 60 (329)
.++-|+|++|+|||+|+.+++-... ..-..++|++ ......+..+. +++..+
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId----tE~~f~~eRi~-~~a~~~ 154 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID----TEGTFRPDRIR-AIAERF 154 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE----cCCCCCHHHHH-HHHHHc
Confidence 5778999999999999999885432 1224567776 33333444443 344444
No 320
>PRK05973 replicative DNA helicase; Provisional
Probab=96.97 E-value=0.0012 Score=55.20 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|.|.+|+|||+|+.+++.....+...++|++
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 357899999999999999999987655545566655
No 321
>PRK15453 phosphoribulokinase; Provisional
Probab=96.97 E-value=0.0013 Score=55.94 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=25.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..++|+|.|.+|+||||+++.+++.+...
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~ 32 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRE 32 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 56899999999999999999999877543
No 322
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.97 E-value=0.011 Score=46.86 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.|+-+|+|..|+|||||...++-.
T Consensus 37 apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 37 APITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred CceEEEEcCCCccHHHHHHHHHhh
Confidence 578899999999999999998753
No 323
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0015 Score=51.07 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..+|+++|.+|+||||+|..+.+.+..... .+++.
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~-~~y~L 57 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGY-HVYLL 57 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCC-eEEEe
Confidence 468999999999999999999998876543 34443
No 324
>PRK14527 adenylate kinase; Provisional
Probab=96.96 E-value=0.00082 Score=54.70 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
...+++|.|++|+||||+++.+++.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999988763
No 325
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.95 E-value=0.0082 Score=54.66 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
+.+|.++|++|+||||++.+++..++.+...+..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 57899999999999999999998776553344444
No 326
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.019 Score=47.66 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
++=|.++||+|.|||-||+.+++..
T Consensus 181 PKGvlLygppgtGktLlaraVahht 205 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTLLARAVAHHT 205 (404)
T ss_pred CcceEEecCCCCchhHHHHHHHhhc
Confidence 4558899999999999999998763
No 327
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.95 E-value=0.00065 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+++|+|++|+||||+|+.+++..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998763
No 328
>PLN02674 adenylate kinase
Probab=96.94 E-value=0.0037 Score=52.58 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.|+|.|++|+||||+++.+++.+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3568899999999999999998875
No 329
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.94 E-value=0.0017 Score=57.96 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCC---ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE---GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
.+|.|+|+.|+||||++..++..+....+ .++.+.+..+. ....+... .....+...+.........++..
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~----~~~~~~~~--~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF----VYDEIETI--SASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE----eccccccc--cceeeeeeccccccCHHHHHHHH
Confidence 57999999999999999999987754332 23333222111 11111000 00000100001111244556667
Q ss_pred hcCceEEEEEecCCChhhHHHHhcc
Q 020206 81 LTRKKVLIVFDDVNHPRQIEFLIGN 105 (329)
Q Consensus 81 ~~~~~~LlvlDdv~~~~~~~~l~~~ 105 (329)
++..+-.+++.++.+.+.....+..
T Consensus 209 LR~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 209 LRRKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred hccCCCEEeeeeeCCHHHHHHHHHH
Confidence 7788889999999888877655544
No 330
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.0007 Score=52.77 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFF 24 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~ 24 (329)
.|+|+|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999987
No 331
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.93 E-value=0.0014 Score=52.27 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+|.|-|++|+|||+|..+.++.++++|...+...
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 58999999999999999999999999887766654
No 332
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.93 E-value=0.0066 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.|+.|+|||||++.++...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998653
No 333
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.93 E-value=0.00079 Score=54.12 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
++++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999988754
No 334
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.92 E-value=0.0014 Score=56.03 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|.|++|+|||+|+.+++.....+-..++|++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 357899999999999999999887655555677776
No 335
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.92 E-value=0.0046 Score=54.79 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc------CCCceEEEeccchhhhcCChHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAHNVREAEETGKLADLRKELLSTL 60 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 60 (329)
.+.-|+|++|+|||+|+.+++-...- .-..++|+. ......+..+.+ ++..+
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId----TE~tF~peRl~~-ia~~~ 184 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID----TEGTFRPDRIVP-IAERF 184 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE----cCCCCCHHHHHH-HHHHc
Confidence 46779999999999999999754321 124667776 333344544443 44444
No 336
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.92 E-value=0.00067 Score=51.97 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
+++|.|++|+|||||++.+++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999998865443
No 337
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.91 E-value=0.0059 Score=53.42 Aligned_cols=118 Identities=18% Similarity=0.242 Sum_probs=62.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH-HH--hcCCCceEEEeccchhh---------hcCChHHHHHHHHHHHhcCCCCCCC
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFS-KI--SRRFEGSYFAHNVREAE---------ETGKLADLRKELLSTLLNDGNMNKF 69 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~-~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~ 69 (329)
++.+|.+.|.+|+|||-||....- +. +..|..++.....-.+. ....+...++.+...+..-...+..
T Consensus 244 dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~ 323 (436)
T COG1875 244 DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEP 323 (436)
T ss_pred CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHHHHHhccccc
Confidence 568999999999999999987653 22 23344444333211111 1122333344444433222211111
Q ss_pred CCcchHHHH----------hhhcCc---eEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206 70 PNIGLNFQS----------KRLTRK---KVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK 122 (329)
Q Consensus 70 ~~~~~~~l~----------~~~~~~---~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~ 122 (329)
.+.....+. .+.+++ +-+||+|+..+ +..+..++... +.|++|++|.-..
T Consensus 324 ~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~---G~GsKIVl~gd~a 388 (436)
T COG1875 324 GDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRA---GEGSKIVLTGDPA 388 (436)
T ss_pred chHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhc---cCCCEEEEcCCHH
Confidence 111111111 123333 45999999975 45577666664 6799998887644
No 338
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.91 E-value=0.0074 Score=49.65 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.|+.|+|||||.+.++...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998743
No 339
>PRK14530 adenylate kinase; Provisional
Probab=96.90 E-value=0.00099 Score=55.34 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.|+|.|++|+||||+++.+++.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998876
No 340
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.90 E-value=0.0016 Score=53.80 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=25.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 1 MDTCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
+++++++|+|+.|+|||||..++++....
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 47899999999999999999999987654
No 341
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.89 E-value=0.00089 Score=54.14 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+.++++|+||+|+|||||++.+.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46899999999999999999998764
No 342
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.89 E-value=0.0043 Score=59.34 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
.++.+|+|.+|+||||++..+...+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999886643
No 343
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.88 E-value=0.0015 Score=54.58 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
+..+|+|+|+||.|||||+..+...+.++-..+..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaV 62 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAV 62 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEE
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEE
Confidence 45789999999999999999999987765333333
No 344
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.88 E-value=0.0013 Score=54.64 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
+|+|.|++|+||||||+.++..+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5889999999999999999988753
No 345
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.88 E-value=0.00087 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 346
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.87 E-value=0.00042 Score=59.54 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+-|.++|++|+|||++++.+.....
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CCcEEEECCCCCchhHHHHhhhccCC
Confidence 35679999999999999999887543
No 347
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.87 E-value=0.0033 Score=51.22 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+|+|.|+.|+||||+++.+++.+...
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987653
No 348
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.87 E-value=0.0012 Score=56.07 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
+|+++|++|+||||+|+.+++.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999887654
No 349
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.0013 Score=50.97 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 1 MDTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
|+.++|+|+|-+|+||||+.+.+.+..
T Consensus 2 k~~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 2 KGRKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred CCceEEEEEcCCCCChHHHHHHHHHHH
Confidence 345899999999999999999887766
No 350
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.0063 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999863
No 351
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.86 E-value=0.014 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+.++.++|++|+||||.+..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999998865
No 352
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.85 E-value=0.0059 Score=52.07 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
-+|.|+||.|+||||-.......+.++++..+.-. ..+++-+.+.. +.+-.+........-..+.++..+++
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI-------EDPIE~vh~sk-kslI~QREvG~dT~sF~~aLraALRe 197 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI-------EDPIEYVHESK-KSLINQREVGRDTLSFANALRAALRE 197 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe-------cCchHhhhcch-HhhhhHHHhcccHHHHHHHHHHHhhc
Confidence 47899999999999999888888877766655543 11122111111 11111111001111155677778888
Q ss_pred ceEEEEEecCCChhhHHHHhcc
Q 020206 84 KKVLIVFDDVNHPRQIEFLIGN 105 (329)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~l~~~ 105 (329)
-+=+|++-+..+.+.+..-+..
T Consensus 198 DPDVIlvGEmRD~ETi~~ALtA 219 (353)
T COG2805 198 DPDVILVGEMRDLETIRLALTA 219 (353)
T ss_pred CCCEEEEeccccHHHHHHHHHH
Confidence 8889999999888877655444
No 353
>PRK14529 adenylate kinase; Provisional
Probab=96.85 E-value=0.0045 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
|+|.|++|+||||+++.+++.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78899999999999999998874
No 354
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.078 Score=45.89 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=43.8
Q ss_pred ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHhc-CCCeEEEecCCChhhhHHHHhh
Q 020206 84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALINC-GVNKIYQIKELVHVDALKLLNQ 150 (329)
Q Consensus 84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~ll~~ 150 (329)
.+-++|+|+++ +.+....++..+.+-+++..+|++|.+. .+++.. +..+.+.+.+ +.++..+++..
T Consensus 104 ~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 104 KQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 44589999995 4567888888887766667666666554 344333 3446777766 66666677653
No 355
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.24 Score=41.97 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=36.1
Q ss_pred eEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHhcC-CCeEEEecCC
Q 020206 85 KVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALINCG-VNKIYQIKEL 139 (329)
Q Consensus 85 ~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~~~-~~~~~~l~~l 139 (329)
.=++|+|+++ +.+....++..+.+-+++..+|++|.+. .++.... ..+.+.+.+.
T Consensus 89 ~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 89 KKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred CEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 3477888885 5677888888888777777777777655 3333332 2345666655
No 356
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.019 Score=51.05 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=37.5
Q ss_pred CCeEEEecCCChhhhHHHHhhhhcC----CCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 130 VNKIYQIKELVHVDALKLLNQCAFG----RDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 130 ~~~~~~l~~l~~~e~~~ll~~~~~~----~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
...+++++..+.+|+.+++.-.... ...+. ++-.+++.=..+|||--++.++..+
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 3356788899999999887654411 11221 2346778888899998887777665
No 357
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.00081 Score=50.95 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.|-|.|+|-||+|||||+.++++..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4678999999999999999998753
No 358
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.84 E-value=0.0064 Score=49.10 Aligned_cols=27 Identities=30% Similarity=0.446 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..+++|.|++|+||||+++.+...+..
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999988754
No 359
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.84 E-value=0.0021 Score=52.64 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
..+++|+|++|+|||||++.++..+.......+++
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999998775543334444
No 360
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.0066 Score=49.75 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..|.||||+|||||.+.++..+...
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhcc
Confidence 5789999999999999999876554
No 361
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.83 E-value=0.0025 Score=53.38 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~ 38 (329)
..++.|.|++|+|||+|+.+++.....+ -..++|+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 3578999999999999999999766555 56677766
No 362
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.83 E-value=0.0019 Score=60.44 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.++.|.|++|+|||+|+.+++.....+-..++|+.
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 57899999999999999999998766656667765
No 363
>PRK13808 adenylate kinase; Provisional
Probab=96.83 E-value=0.0042 Score=54.51 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
|+|.|+||+||||++..+++.+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998875
No 364
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.011 Score=50.55 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
+..+.|||++|.|||-+|+.++....-
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~ 192 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGV 192 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCC
Confidence 567899999999999999999887543
No 365
>PRK06761 hypothetical protein; Provisional
Probab=96.82 E-value=0.0018 Score=55.64 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
.++++|.|++|+||||+++.+++.+...
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 4789999999999999999999987654
No 366
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.82 E-value=0.0033 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
.+|+|.|+.|+||||+++.+++.+...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 27 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEAR 27 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 368999999999999999999988654
No 367
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.82 E-value=0.0038 Score=52.68 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|.|++|+|||+|+.+++.....+-..++|+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 367899999999999999999876545556677766
No 368
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.81 E-value=0.0023 Score=49.01 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.-|.|+|++|+||+.+|+.++..-
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhc
Confidence 457899999999999999877653
No 369
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.81 E-value=0.0096 Score=49.35 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..++|.|+.|+|||||++.++..+
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998643
No 370
>PRK13947 shikimate kinase; Provisional
Probab=96.81 E-value=0.0011 Score=52.78 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.|+|+|++|+||||+++.+++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998864
No 371
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.81 E-value=0.0011 Score=53.60 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFE 32 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~ 32 (329)
.+.++|.||+|+|||||+..+++.....|.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 578999999999999999999877543443
No 372
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.81 E-value=0.0021 Score=53.39 Aligned_cols=23 Identities=17% Similarity=-0.098 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
.+++.|+|+.|.||||+.+.++.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999987
No 373
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.81 E-value=0.0039 Score=51.22 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..++|+|.|+.|+||||+++.+++.+...
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999987544
No 374
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.80 E-value=0.001 Score=54.47 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 375
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.80 E-value=0.0097 Score=58.64 Aligned_cols=34 Identities=15% Similarity=-0.084 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
.++++|+|.+|+||||+++.+.+.+......+.+
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~ 401 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIG 401 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 4689999999999999999998877654333333
No 376
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.80 E-value=0.0015 Score=54.90 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=22.0
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 8 IWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 8 I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
|.||+|+||||+++.+.+.+......+..+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~v 30 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIV 30 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEE
Confidence 689999999999999999876654444443
No 377
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.79 E-value=0.00099 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+|+|.|.+|+||||||+.+++.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 378
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.021 Score=54.77 Aligned_cols=151 Identities=11% Similarity=0.051 Sum_probs=76.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchh-hhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREA-EETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
..+++.++|++|+|||++++.++..+.-++ +-.+.-+. .+... ....-+...+.+.
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~----~evdc~el~~~s~~-------------------~~etkl~~~f~~a 486 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHL----LEVDCYELVAESAS-------------------HTETKLQAIFSRA 486 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCce----EeccHHHHhhcccc-------------------hhHHHHHHHHHHH
Confidence 457899999999999999999998875432 21111100 00000 0001122333333
Q ss_pred hcCceEEEEEecCC-------Ch------hhHHHHhc-ccCC-CCCCcEEEEEeCch-hHHHh--cCCCeEEEecCCChh
Q 020206 81 LTRKKVLIVFDDVN-------HP------RQIEFLIG-NLDW-FASGSRILITARDK-QALIN--CGVNKIYQIKELVHV 142 (329)
Q Consensus 81 ~~~~~~LlvlDdv~-------~~------~~~~~l~~-~l~~-~~~~~~ilitsr~~-~~~~~--~~~~~~~~l~~l~~~ 142 (329)
-...+.+|.+=|++ .. ..++.++. -... ..++..++.|+.+. ..... ......+.++.++++
T Consensus 487 ~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~ 566 (953)
T KOG0736|consen 487 RRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEE 566 (953)
T ss_pred hhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHH
Confidence 34466677776652 11 12333333 1111 12233344444332 21111 123457888999999
Q ss_pred hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch
Q 020206 143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI 178 (329)
Q Consensus 143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 178 (329)
|=.++|+-......- ..+-..+.++.+|.|.-.
T Consensus 567 qRl~iLq~y~~~~~~---n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 567 QRLEILQWYLNHLPL---NQDVNLKQLARKTSGFSF 599 (953)
T ss_pred HHHHHHHHHHhcccc---chHHHHHHHHHhcCCCCH
Confidence 999999877622111 111225566777776543
No 379
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.79 E-value=0.0021 Score=52.67 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=45.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcC-ChHHHHHHHHHHHhcCCCCCCCCC----cchHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG-KLADLRKELLSTLLNDGNMNKFPN----IGLNF 76 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~ 76 (329)
.+.++++.|++|+|||+++..+...+. ....+.+. ...+.... ....+.. . ...... .... .+...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~-~D~~r~~~p~~~~~~~----~-~~~~~~-~~~~~~a~~~~~~ 84 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVID-ADEFRQFHPDYDELLK----A-DPDEAS-ELTQKEASRLAEK 84 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE--GGGGGGGSTTHHHHHH----H-HCCCTH-HHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEe-hHHHHHhccchhhhhh----h-hhhhhH-HHHHHHHHHHHHH
Confidence 467888999999999999999977764 23444443 33332222 1222222 1 111000 0000 03344
Q ss_pred HHhhhcCceEEEEEecCC-ChhhHHHHhcccC
Q 020206 77 QSKRLTRKKVLIVFDDVN-HPRQIEFLIGNLD 107 (329)
Q Consensus 77 l~~~~~~~~~LlvlDdv~-~~~~~~~l~~~l~ 107 (329)
+.+....++.=||+|..- +.+....++..+.
T Consensus 85 ~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k 116 (199)
T PF06414_consen 85 LIEYAIENRYNIIFEGTLSNPSKLRKLIREAK 116 (199)
T ss_dssp HHHHHHHCT--EEEE--TTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEecCCCChhHHHHHHHHHH
Confidence 444444566778889874 4455554555544
No 380
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.78 E-value=0.0015 Score=49.32 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..++.+.|+.|+|||||++.+++.+.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998753
No 381
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.036 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+=|..+||+|.|||-+|+..+.+..
T Consensus 206 KGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred CceEeeCCCCCcHHHHHHHHHHhcc
Confidence 4578999999999999999876644
No 382
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.78 E-value=0.0083 Score=47.60 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-|.|+|++|+||+.+|+.+.+.
T Consensus 24 pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 24 PVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp -EEEECSTTSSHHHHHHHHHHC
T ss_pred CEEEEcCCCCcHHHHHHHHHHh
Confidence 4679999999999999999874
No 383
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0015 Score=51.69 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.||+|+|||||++.+.++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999998875
No 384
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.0089 Score=51.21 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=31.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+++=|+|+.|+|||++|.+++-.....-...+|+.
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 367789999999999999999988777777888887
No 385
>PRK13768 GTPase; Provisional
Probab=96.78 E-value=0.0022 Score=54.60 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
.+++|.|++|+||||++..++..+......+..+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 5789999999999999999998876654444444
No 386
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.76 E-value=0.0085 Score=57.19 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
.++.+|+|.+|+||||++..++..+..
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~ 186 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVK 186 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999876644
No 387
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.76 E-value=0.097 Score=44.34 Aligned_cols=185 Identities=11% Similarity=0.143 Sum_probs=99.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc------CCCceEEEeccch--------------hhh---cCChHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAHNVRE--------------AEE---TGKLADLRKELLS 58 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~------~~~~~~~~~~~~~--------------~~~---~~~~~~~~~~i~~ 58 (329)
+.|-..++||+|.||-|.+..+.+.+-. +-....|...... +.+ ...-.-+++++++
T Consensus 33 d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellK 112 (351)
T KOG2035|consen 33 DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLK 112 (351)
T ss_pred CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHH
Confidence 3567889999999999999988876422 1222223221110 000 0111223344444
Q ss_pred HHhcCCCCCCCCCcchHHHHhhhcCceE-EEEEecCCCh-----hhHHHHhcccCCCCCCcEEEEEeCch-hHHHhc-CC
Q 020206 59 TLLNDGNMNKFPNIGLNFQSKRLTRKKV-LIVFDDVNHP-----RQIEFLIGNLDWFASGSRILITARDK-QALINC-GV 130 (329)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~~-~~ 130 (329)
........ +....+++ ++|+-.+++. ..++.-+... ...+++|+..... .+.... ..
T Consensus 113 evAQt~qi------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY---s~~~RlIl~cns~SriIepIrSR 177 (351)
T KOG2035|consen 113 EVAQTQQI------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKY---SSNCRLILVCNSTSRIIEPIRSR 177 (351)
T ss_pred HHHhhcch------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHH---hcCceEEEEecCcccchhHHhhh
Confidence 43322210 01112333 5566555321 2233333332 4678877644332 111111 22
Q ss_pred CeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCC-----------CHHHHHHHH
Q 020206 131 NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK-----------RKEVWENAI 199 (329)
Q Consensus 131 ~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-----------~~~~~~~~~ 199 (329)
.-.++++..+++|....+...+....-.- ..+.+.+|+++++||-.---++....+-+ +.-+|+.++
T Consensus 178 Cl~iRvpaps~eeI~~vl~~v~~kE~l~l--p~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i 255 (351)
T KOG2035|consen 178 CLFIRVPAPSDEEITSVLSKVLKKEGLQL--PKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYI 255 (351)
T ss_pred eeEEeCCCCCHHHHHHHHHHHHHHhcccC--cHHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHH
Confidence 33678999999999999998874333222 26789999999999977665665554331 345676666
Q ss_pred Hhhc
Q 020206 200 SKLE 203 (329)
Q Consensus 200 ~~l~ 203 (329)
.+..
T Consensus 256 ~e~a 259 (351)
T KOG2035|consen 256 QEIA 259 (351)
T ss_pred HHHH
Confidence 6553
No 388
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.76 E-value=0.011 Score=50.34 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.|+.|+|||||++.++...
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998653
No 389
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.76 E-value=0.0025 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+..|+||||+|||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58999999999999888888876
No 390
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0087 Score=50.76 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF 31 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~ 31 (329)
++=|+++|++|.|||-||+.+++.....|
T Consensus 219 PKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 219 PKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred CCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 45689999999999999999988755443
No 391
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.75 E-value=0.019 Score=49.13 Aligned_cols=102 Identities=17% Similarity=0.297 Sum_probs=55.1
Q ss_pred HHHHhhhcCceEEEEEecCC----ChhhHHHHhcccCCC-------CCCcEEEEEeCchhHHHhcCCCeEEEecCCChhh
Q 020206 75 NFQSKRLTRKKVLIVFDDVN----HPRQIEFLIGNLDWF-------ASGSRILITARDKQALINCGVNKIYQIKELVHVD 143 (329)
Q Consensus 75 ~~l~~~~~~~~~LlvlDdv~----~~~~~~~l~~~l~~~-------~~~~~ilitsr~~~~~~~~~~~~~~~l~~l~~~e 143 (329)
+.+.+..++.++-||+|+.- ....+..|...++.- +.|..++|.-.+...-...+ .. +..|--..
T Consensus 187 NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAlPSKL~~rfp~CTgy~VfVVLHNmnPR~d~g-GN---I~~LKiqA 262 (369)
T PF02456_consen 187 NIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHALPSKLHDRFPKCTGYYVFVVLHNMNPRRDIG-GN---IANLKIQA 262 (369)
T ss_pred HHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcCcHHHhhhccCCceeEEEEEeccCCcccccC-CC---ccchhhhc
Confidence 45566677789999999872 223455555554421 13445666555543222211 11 22221111
Q ss_pred hHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhc
Q 020206 144 ALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLF 188 (329)
Q Consensus 144 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 188 (329)
-..++ .+.....+..+-|..++.|.|.+|..+.+-+.
T Consensus 263 K~HIi--------Sp~~~p~QlsRFin~yt~glp~~i~~LLKdif 299 (369)
T PF02456_consen 263 KCHII--------SPKMHPSQLSRFINNYTKGLPTAISLLLKDIF 299 (369)
T ss_pred eeeee--------cCCCCHHHHHHHHHHhccCCChhHHHHHHHHH
Confidence 11111 22223446678888999999999988776553
No 392
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.75 E-value=0.0022 Score=55.10 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
+++.|+|++|+|||||+.+++..++++. .+..+-
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5899999999999999999999998876 444443
No 393
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.75 E-value=0.0083 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.||.|+|||||.+.++.-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 467899999999999999998864
No 394
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.74 E-value=0.0014 Score=53.94 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
...+++|+|++|+|||||++.++..+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998864
No 395
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.74 E-value=0.0016 Score=57.57 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
.+++.|+||+|+||||||..+++.+..
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478899999999999999999987644
No 396
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.74 E-value=0.001 Score=52.60 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
++|+|++|+||||+++.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999998875
No 397
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.74 E-value=0.034 Score=45.78 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+++|.|+.|+|||||++.++...
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 578999999999999999998643
No 398
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.74 E-value=0.0056 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
...++|.|+.|+|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998875
No 399
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.74 E-value=0.0049 Score=51.68 Aligned_cols=36 Identities=11% Similarity=0.023 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|.|++|+|||||+.+++.....+-..++|++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 358899999999999999888876644445556654
No 400
>PLN02459 probable adenylate kinase
Probab=96.73 E-value=0.0068 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.318 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.++|.|++|+||||+++.+++.+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36778999999999999998875
No 401
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.72 E-value=0.0023 Score=63.18 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=55.2
Q ss_pred CceEEEEEecCC---ChhhH----HHHhcccCCCCCCcEEEEEeCchhHHHhcCCCeEEEecC--CChhhhHHHHhhhhc
Q 020206 83 RKKVLIVFDDVN---HPRQI----EFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKE--LVHVDALKLLNQCAF 153 (329)
Q Consensus 83 ~~~~LlvlDdv~---~~~~~----~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~~--l~~~e~~~ll~~~~~ 153 (329)
..+.|+++|+.. ++..- ..++..+. ..++.+|+||..............+.-.. ++.+ ......+...
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~-~l~~~Ykl~~ 482 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEE-TLRPTYRLLI 482 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecC-cCcEEEEEee
Confidence 467799999983 22222 22333332 24778999999865443322111111111 1221 2222222221
Q ss_pred CCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhh
Q 020206 154 GRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKL 202 (329)
Q Consensus 154 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l 202 (329)
+.... ..+-.+++. .|+|-.+..-|..+.......+..++..+
T Consensus 483 G~~g~-----S~a~~iA~~-~Glp~~ii~~A~~~~~~~~~~~~~li~~l 525 (782)
T PRK00409 483 GIPGK-----SNAFEIAKR-LGLPENIIEEAKKLIGEDKEKLNELIASL 525 (782)
T ss_pred CCCCC-----cHHHHHHHH-hCcCHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 22121 225555555 48888888888777665555565665554
No 402
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.72 E-value=0.0015 Score=48.49 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~ 26 (329)
|+|.|.+|+|||||.+.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 403
>PRK14526 adenylate kinase; Provisional
Probab=96.71 E-value=0.0076 Score=49.75 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
++|.|++|+||||+++.+++.+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998765
No 404
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.70 E-value=0.0025 Score=63.59 Aligned_cols=137 Identities=18% Similarity=0.208 Sum_probs=72.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCC----CceEEEeccchh-hhcCChH-HHHHHHHHHHhcCCCCCCCCCcchHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRF----EGSYFAHNVREA-EETGKLA-DLRKELLSTLLNDGNMNKFPNIGLNFQS 78 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 78 (329)
-++|+|.+|+||||+...++-...... +..++....... ..+.... .+..-+...+..... .........
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~~~~ 299 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIEAHQ 299 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhHHHH
Confidence 468999999999999999987653332 222232211000 0011111 222222222222221 111222224
Q ss_pred hhhcCceEEEEEecCCChhh---------HHHHhcccCCCCCCcEEEEEeCchhHHHhcCCCeEEEecCCChhhhHHHHh
Q 020206 79 KRLTRKKVLIVFDDVNHPRQ---------IEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLN 149 (329)
Q Consensus 79 ~~~~~~~~LlvlDdv~~~~~---------~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~~l~~~e~~~ll~ 149 (329)
+.+...++++.+|.++.... +..+++. -+..++|+|+|....-........+++..+.++.....+.
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 66778899999999854321 3333333 3578899999876443333334456666666665554443
No 405
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.70 E-value=0.0016 Score=50.82 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
|.|+|++|+||||+++.+++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 406
>PRK13949 shikimate kinase; Provisional
Probab=96.69 E-value=0.0017 Score=51.70 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+.|+|+|++|+||||+++.+++.+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 407
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.67 E-value=0.0031 Score=55.48 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
...++.++|++|+||||++..++..+...-..+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 357999999999999999999999887653344443
No 408
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.67 E-value=0.017 Score=47.36 Aligned_cols=23 Identities=22% Similarity=-0.044 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|+|+.|.|||||.+.++..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 68999999999999999999853
No 409
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.67 E-value=0.0055 Score=51.80 Aligned_cols=35 Identities=23% Similarity=0.130 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~ 38 (329)
.++.|.|++|+|||+++.+++...... -..++|++
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 588999999999999999998876554 45666665
No 410
>PRK13948 shikimate kinase; Provisional
Probab=96.67 E-value=0.0019 Score=51.91 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+.|+++|+.|+||||+++.+++.+.
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999998864
No 411
>PRK13973 thymidylate kinase; Provisional
Probab=96.67 E-value=0.0062 Score=50.47 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..+.|+|-|..|+||||+++.+++.+...-..++...
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4578999999999999999999999876544444443
No 412
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.023 Score=49.86 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFE 32 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~ 32 (329)
++-|.++||+|+|||-||+.++.+-...|-
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Akeaga~fI 156 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKEAGANFI 156 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHHcCCCcc
Confidence 456889999999999999999998665553
No 413
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.66 E-value=0.0014 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
++++|.|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998753
No 414
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.66 E-value=0.0018 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+.++|+|++|+|||||+..+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3578999999999999999998654
No 415
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.65 E-value=0.023 Score=47.98 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|+.|+|||||.+.++..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 416
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.019 Score=56.63 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=48.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-chHHHHhhhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLNFQSKRLTR 83 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 83 (329)
-..+.||.|+|||.||+.+++.+-+..+.-+-+. +.+... +.+..+. ++....- ....+.+.+++
T Consensus 593 wflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~~e-vskligs---p~gyvG~e~gg~Lteavrr 658 (898)
T KOG1051|consen 593 WFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEFQE-VSKLIGS---PPGYVGKEEGGQLTEAVKR 658 (898)
T ss_pred EEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhhhh-hhhccCC---CcccccchhHHHHHHHHhc
Confidence 4678999999999999999999866655555544 222222 2222111 1122211 44567777777
Q ss_pred ce-EEEEEecCCC
Q 020206 84 KK-VLIVFDDVNH 95 (329)
Q Consensus 84 ~~-~LlvlDdv~~ 95 (329)
++ .+|.||||+.
T Consensus 659 rP~sVVLfdeIEk 671 (898)
T KOG1051|consen 659 RPYSVVLFEEIEK 671 (898)
T ss_pred CCceEEEEechhh
Confidence 76 4888999964
No 417
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.65 E-value=0.012 Score=44.44 Aligned_cols=34 Identities=15% Similarity=-0.036 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc--CCCceEEEe
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISR--RFEGSYFAH 38 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~--~~~~~~~~~ 38 (329)
.+.|.|++|+|||+.+..++..... ....++++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 4789999999999999999887654 345555554
No 418
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.65 E-value=0.0027 Score=49.67 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
+++|+|+.|+|||||+..++..++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999988765
No 419
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.012 Score=48.40 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+++|.|+.|+|||||++.++....
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCC
Confidence 5789999999999999999987654
No 420
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.016 Score=54.64 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=76.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
++=|.++||+|+|||.||+.++....- -+++ .+ -+++ ...+...+.. -..+.+.+..+
T Consensus 183 PkGvlLvGpPGTGKTLLAkAvAgEA~V-----PFf~----iS----GS~F----VemfVGvGAs-----RVRdLF~qAkk 240 (596)
T COG0465 183 PKGVLLVGPPGTGKTLLAKAVAGEAGV-----PFFS----IS----GSDF----VEMFVGVGAS-----RVRDLFEQAKK 240 (596)
T ss_pred ccceeEecCCCCCcHHHHHHHhcccCC-----Ccee----cc----chhh----hhhhcCCCcH-----HHHHHHHHhhc
Confidence 455889999999999999999876322 1121 00 0011 1111111110 01233444455
Q ss_pred CceEEEEEecCCCh----------------hhHHHHhcccCCCC-CCcEEEE--EeCchh----HHHhcCCCeEEEecCC
Q 020206 83 RKKVLIVFDDVNHP----------------RQIEFLIGNLDWFA-SGSRILI--TARDKQ----ALINCGVNKIYQIKEL 139 (329)
Q Consensus 83 ~~~~LlvlDdv~~~----------------~~~~~l~~~l~~~~-~~~~ili--tsr~~~----~~~~~~~~~~~~l~~l 139 (329)
+-+|+|++|.++.. +.+..++.-..... +...|++ |.|... .++..+..+.+.++..
T Consensus 241 ~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~P 320 (596)
T COG0465 241 NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELP 320 (596)
T ss_pred cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCc
Confidence 56899999998431 22333433332222 2233444 333321 1222235566777777
Q ss_pred ChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCchH
Q 020206 140 VHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPIA 179 (329)
Q Consensus 140 ~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pla 179 (329)
+-..-.+++.-+..... .+... ...|++.+-|.-.|
T Consensus 321 Di~gRe~IlkvH~~~~~l~~~Vd----l~~iAr~tpGfsGA 357 (596)
T COG0465 321 DIKGREQILKVHAKNKPLAEDVD----LKKIARGTPGFSGA 357 (596)
T ss_pred chhhHHHHHHHHhhcCCCCCcCC----HHHHhhhCCCcccc
Confidence 76666677764442222 12222 44577887776654
No 421
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0073 Score=48.24 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..++|.|+.|+|||||++.++...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999988754
No 422
>PTZ00035 Rad51 protein; Provisional
Probab=96.64 E-value=0.0096 Score=52.86 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..++.|+|++|+|||+|+.+++-...
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~q 143 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQ 143 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhc
Confidence 35788999999999999999986543
No 423
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.64 E-value=0.0029 Score=49.44 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
.+++.|+|..|+|||||+.++...++.+...+..+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~i 36 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATV 36 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEE
Confidence 47899999999999999999999988775544444
No 424
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.64 E-value=0.014 Score=49.97 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
...+.++|++|+||||++..++..+..+-..+.++.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~ 110 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 110 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence 368999999999999999999887755433444443
No 425
>PRK14532 adenylate kinase; Provisional
Probab=96.63 E-value=0.0016 Score=52.81 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
|+|.|++|+||||+++.+++.+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998765
No 426
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.63 E-value=0.0044 Score=54.46 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=56.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-chHHHHhhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLNFQSKRL 81 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~l~~~~ 81 (329)
...++|.|+.|+|||||++.++..+.... .++.+.+..+..... .... .+............ ..+.+...+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~------~~~~-~l~~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPH------PNYV-HLFYSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCC------CCEE-EEEecCCCCCcCccCHHHHHHHHh
Confidence 45899999999999999999887654332 233333222211110 0000 00000110011111 345555667
Q ss_pred cCceEEEEEecCCChhhHHHHhcccCCCCCCcE-EEEEeCch
Q 020206 82 TRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSR-ILITARDK 122 (329)
Q Consensus 82 ~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~-ilitsr~~ 122 (329)
+..+-.|++|++...+.+. ++.... .|.. ++.|+...
T Consensus 216 r~~pd~ii~gE~r~~e~~~-~l~a~~---~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFD-FIRAVN---TGHPGSITTLHAG 253 (308)
T ss_pred cCCCCeEEEeccCCHHHHH-HHHHHh---cCCCeEEEEEeCC
Confidence 7778899999998766554 444432 2222 35555543
No 427
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.63 E-value=0.0031 Score=54.18 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=29.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 1 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
++..++.|.|.+|+|||||+..++..+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 367899999999999999999999988766544433
No 428
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.62 E-value=0.012 Score=48.34 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
...++|.|+.|+|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999988864
No 429
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.62 E-value=0.0024 Score=52.70 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..+.|.|++|+|||+|+.+++.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~ 41 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA 41 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEEcCcccccchhhHHHHhcccc
Confidence 45789999999999999999998754
No 430
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.61 E-value=0.0031 Score=48.93 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
++.+.|++|+||||++..++..+...-..+.++
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii 33 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVL 33 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 478999999999999999998876554444443
No 431
>PRK12338 hypothetical protein; Provisional
Probab=96.61 E-value=0.0021 Score=56.05 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.+|.|.|.+|+||||+|..+++++
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHC
Confidence 46799999999999999999999875
No 432
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.61 E-value=0.0023 Score=49.80 Aligned_cols=28 Identities=29% Similarity=0.270 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFE 32 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~ 32 (329)
.+.|+||+|+|||||.+.+|.-+.-.-.
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp~~G 58 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISPTSG 58 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCCCCc
Confidence 5789999999999999999986554433
No 433
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.043 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
+-|.++||+|.|||-||+.++.....
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 35789999999999999999988753
No 434
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.60 E-value=0.0029 Score=52.69 Aligned_cols=24 Identities=21% Similarity=-0.024 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
+.+++.|+|+.|.||||+.+.++.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 457899999999999999999875
No 435
>PRK13975 thymidylate kinase; Provisional
Probab=96.60 E-value=0.0021 Score=52.41 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
.+|+|.|+.|+||||+++.+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 68999999999999999999998764
No 436
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.60 E-value=0.0022 Score=51.19 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+.+.|+|.|++|+||||+++.+++.+
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHc
Confidence 34679999999999999999998875
No 437
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.59 E-value=0.0018 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
|+|.|++|+||||+++.+++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998874
No 438
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.59 E-value=0.014 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..++|.|+.|+|||||.+.++...
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998754
No 439
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.59 E-value=0.004 Score=49.99 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
|++.|+|.-|+|||||.+++.+...+.....+...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~n 35 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVN 35 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEEC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEc
Confidence 68999999999999999999973333333344444
No 440
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.014 Score=48.96 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
...++|.|+.|+|||||.+.++..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998754
No 441
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.58 E-value=0.004 Score=48.90 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
+++.|+|.+|+|||||+..+...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999987655
No 442
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.0022 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-+++|+|++|+|||||++.++.-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Confidence 46899999999999999999864
No 443
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.0021 Score=51.94 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+|+|-||=|+||||||+.+++.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 47899999999999999999999876
No 444
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.57 E-value=0.026 Score=55.49 Aligned_cols=28 Identities=25% Similarity=0.187 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
.++++|+|.+|+||||+++.+.+.+...
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~ 365 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEEL 365 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999998877654
No 445
>PRK13946 shikimate kinase; Provisional
Probab=96.56 E-value=0.0023 Score=51.72 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.|++.|++|+||||+++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999887
No 446
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.56 E-value=0.0038 Score=52.38 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|.|++|+|||+|+.+++.........++|+.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 357899999999999999998876544555677766
No 447
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.56 E-value=0.0098 Score=54.31 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
-.+.|.||+|+|||||++.+..
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3688999999999999998875
No 448
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.0094 Score=55.43 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+++|+|++|+||||++.+++..+..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999876554
No 449
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.56 E-value=0.0041 Score=54.79 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=28.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
...+|.|+|++|+|||||+..+...+...-..+..+
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi 90 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVL 90 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 456899999999999999999998877653333333
No 450
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.56 E-value=0.008 Score=53.55 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
-++.|+|++|+||||+.+.+....
T Consensus 410 dvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 410 DVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred CeEEEEecCCCCcchHHHHHHHHh
Confidence 478999999999999999988653
No 451
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.55 E-value=0.0021 Score=56.34 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
++|++.|++|+||||+|+.+++.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 688999999999999999998775
No 452
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.54 E-value=0.0021 Score=50.80 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~ 26 (329)
|+|+|.+|+|||||+..+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999877
No 453
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.54 E-value=0.0033 Score=46.80 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+..+|.+.|+=|+|||||++.+++.+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 46799999999999999999998875
No 454
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.54 E-value=0.0027 Score=45.96 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFF 24 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~ 24 (329)
...++|.|++|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3678999999999999999975
No 455
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.54 E-value=0.0039 Score=44.12 Aligned_cols=26 Identities=35% Similarity=0.622 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
++++.|.+|+||||++..++..+++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999999999988763
No 456
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.53 E-value=0.0039 Score=51.64 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
|+|+|.|-||+||||++..++..+.+.-..+..+
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5789999999999999999999877653334443
No 457
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.53 E-value=0.0064 Score=53.56 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc------CCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~------~~~~~~~~~ 38 (329)
..++-|+|++|+|||+|+.+++..... .-..++|+.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 357889999999999999999887542 123677776
No 458
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.0047 Score=48.46 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=57.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
.+++|.|+.|.|||||++.++..+.. ..+.+++... .... ...... .......... +..+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~-~~~~-~~~~~~----~~~i~~~~ql-S~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGK-DIAK-LPLEEL----RRRIGYVPQL-SGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCE-Eccc-CCHHHH----HhceEEEeeC-CHHHHHHHHHHHHHhc
Confidence 57899999999999999999875432 3344444311 1100 001111 1111100000 0011122233444445
Q ss_pred ceEEEEEecCC---ChhhHHHHhcccCCC-CCCcEEEEEeCchhHHHh
Q 020206 84 KKVLIVFDDVN---HPRQIEFLIGNLDWF-ASGSRILITARDKQALIN 127 (329)
Q Consensus 84 ~~~LlvlDdv~---~~~~~~~l~~~l~~~-~~~~~ilitsr~~~~~~~ 127 (329)
.+-++++|+.. +......+...+... .++..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 67799999983 333333333322211 224678888887765554
No 459
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.53 E-value=0.0034 Score=52.65 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=25.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEG 33 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~ 33 (329)
+..+.|.||+|+||||+++.+...+..+...
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 5678899999999999999998877666543
No 460
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.53 E-value=0.0074 Score=56.32 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
-++.|+|+.|+||||+...+...+......++-+-+..+.. +.. + .+... . +.........++..++.
T Consensus 243 GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~----~~~----~-~q~~v--~-~~~g~~f~~~lr~~LR~ 310 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ----IEG----I-GQIQV--N-PKIGLTFAAGLRAILRQ 310 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee----cCC----C-ceEEE--c-cccCccHHHHHHHHHhc
Confidence 47899999999999999988776654323333332221111 000 0 01000 0 01111245667777888
Q ss_pred ceEEEEEecCCChhhHHHHhcc
Q 020206 84 KKVLIVFDDVNHPRQIEFLIGN 105 (329)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~l~~~ 105 (329)
.+=.|++.++.+.+.....+..
T Consensus 311 dPDvI~vGEiRd~eta~~a~~a 332 (486)
T TIGR02533 311 DPDIIMVGEIRDLETAQIAIQA 332 (486)
T ss_pred CCCEEEEeCCCCHHHHHHHHHH
Confidence 8889999999988876655444
No 461
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.022 Score=55.33 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=66.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcC-C-----CceEEEeccchhhh----cCChHHHHHHHHHHHhcCCCCCCCCCcchHH
Q 020206 7 GIWGIGGVGKTAIAGAFFSKISRR-F-----EGSYFAHNVREAEE----TGKLADLRKELLSTLLNDGNMNKFPNIGLNF 76 (329)
Q Consensus 7 ~I~G~~GiGKTtLa~~~~~~~~~~-~-----~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 76 (329)
+++|++|+|||+++.-++.++.+. . +..++-.+++..-. ...+++-++.++
T Consensus 195 vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl------------------- 255 (786)
T COG0542 195 VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVL------------------- 255 (786)
T ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHH-------------------
Confidence 578999999999999999986543 1 22222222221111 122222222222
Q ss_pred HHhhhcCceEEEEEecCCC------h----hhHHHH-hcccCCCCCCcE-EEEEeCchhHHH------hcCCCeEEEecC
Q 020206 77 QSKRLTRKKVLIVFDDVNH------P----RQIEFL-IGNLDWFASGSR-ILITARDKQALI------NCGVNKIYQIKE 138 (329)
Q Consensus 77 l~~~~~~~~~LlvlDdv~~------~----~~~~~l-~~~l~~~~~~~~-ilitsr~~~~~~------~~~~~~~~~l~~ 138 (329)
.+.....+++|++|.++. . -+...+ .+.+. ....+ |=.||-+++--. .....+.+.+..
T Consensus 256 -~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~E 332 (786)
T COG0542 256 -KEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDE 332 (786)
T ss_pred -HHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCC
Confidence 222223489999999831 1 122222 23332 12233 445666653211 113557888999
Q ss_pred CChhhhHHHHhhh
Q 020206 139 LVHVDALKLLNQC 151 (329)
Q Consensus 139 l~~~e~~~ll~~~ 151 (329)
.+.+++..+++-.
T Consensus 333 Ps~e~ti~ILrGl 345 (786)
T COG0542 333 PSVEDTIAILRGL 345 (786)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999888743
No 462
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.52 E-value=0.15 Score=45.17 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-|.|+|++|+||+++|+.+...
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHh
Confidence 4789999999999999988753
No 463
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.51 E-value=0.004 Score=53.00 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=29.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..+|+|+|.||+|||||...+...+.++-..+..+.
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlA 86 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLA 86 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEE
Confidence 458999999999999999999998877655555443
No 464
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.51 E-value=0.0033 Score=54.31 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
|.|+|+|-||+||||++..++..+...-..+..+.
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD 35 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVG 35 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 57899999999999999999998776543444443
No 465
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.51 E-value=0.042 Score=47.42 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
...++|.|+.|.|||||++.++..+.
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 34789999999999999999987653
No 466
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.50 E-value=0.0025 Score=50.71 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+|+|+|++|+||||+|+.+++.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 467
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.50 E-value=0.0021 Score=52.00 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..++|.|++|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997754
No 468
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.50 E-value=0.0042 Score=52.08 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFE 32 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~ 32 (329)
.+.+++|.|++|+|||||++.++..+.....
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3568999999999999999999988765543
No 469
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.49 E-value=0.026 Score=48.22 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
++-+++++|.+|+||.-.++.+++...
T Consensus 109 KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 109 KPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 466889999999999999999998753
No 470
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.49 E-value=0.023 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
-|.|+|++|+||+++|+.+...-
T Consensus 24 pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 24 PVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CEEEECCCCChHHHHHHHHHHhc
Confidence 47899999999999999887643
No 471
>PRK05439 pantothenate kinase; Provisional
Probab=96.48 E-value=0.0031 Score=54.91 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
.+-+|+|.|++|+||||+|+.+...+..
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999886654
No 472
>PRK13764 ATPase; Provisional
Probab=96.47 E-value=0.0075 Score=57.25 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=48.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
...|.|+|++|+||||++..+++.+..+...+..+-+..+..-... ..+.... . .+ ........++
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~--------i~q~~~~----~-~~-~~~~~~~lLR 322 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPE--------ITQYSKL----E-GS-MEETADILLL 322 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCc--------ceEEeec----c-cc-HHHHHHHHHh
Confidence 3568999999999999999999887654322224332322211100 0000000 0 00 1111222255
Q ss_pred CceEEEEEecCCChhhHHHH
Q 020206 83 RKKVLIVFDDVNHPRQIEFL 102 (329)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~l 102 (329)
.++=.|++|++.+.+.++.+
T Consensus 323 ~rPD~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 323 VRPDYTIYDEMRKTEDFKIF 342 (602)
T ss_pred hCCCEEEECCCCCHHHHHHH
Confidence 67779999999988887754
No 473
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.47 E-value=0.0033 Score=54.36 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+-+|+|.|++|+||||+++.+...+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999988876654
No 474
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.46 E-value=0.025 Score=57.43 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH-Hhh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ-SKR 80 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~ 80 (329)
+.++++|+|.+|+||||+.+.+.+.+...-..++... . .......+-...+.. ...+..+ ...
T Consensus 396 ~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~A-----p----TgkAA~~L~e~~Gi~-------a~TIas~ll~~ 459 (1102)
T PRK13826 396 PARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGA-----L----AGKAAEGLEKEAGIQ-------SRTLSSWELRW 459 (1102)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEc-----C----cHHHHHHHHHhhCCC-------eeeHHHHHhhh
Confidence 3578999999999999999999887654432233221 0 111111111111111 1111111 111
Q ss_pred -----hcCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCc
Q 020206 81 -----LTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARD 121 (329)
Q Consensus 81 -----~~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~ 121 (329)
.-..+.+||+|+.. +..++..++.... ..++++|+..=.
T Consensus 460 ~~~~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~--~~garvVLVGD~ 505 (1102)
T PRK13826 460 NQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVT--RAGAKLVLVGDP 505 (1102)
T ss_pred ccCccCCCCCcEEEEECcccCCHHHHHHHHHHHH--hcCCEEEEECCH
Confidence 11246799999984 4555666665543 357788877643
No 475
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.46 E-value=0.01 Score=51.95 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=30.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+++-|+|+.|+|||||+..+...+.......+|+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 478999999999999999999988776666777776
No 476
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.46 E-value=0.14 Score=50.33 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.-|.|+|++|+|||.+|+.+...-
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhc
Confidence 358899999999999999987754
No 477
>PRK04182 cytidylate kinase; Provisional
Probab=96.45 E-value=0.0027 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998875
No 478
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.45 E-value=0.018 Score=50.46 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|+.|.|||||.+.++..
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 479
>PRK08356 hypothetical protein; Provisional
Probab=96.44 E-value=0.0032 Score=51.41 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFF 24 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~ 24 (329)
+..+|+|+|++|+||||+|+.+.
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 44678999999999999999984
No 480
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.44 E-value=0.0033 Score=50.34 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
...+++|+|++|+|||||++.++....
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999988754
No 481
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.43 E-value=0.0072 Score=53.39 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC------CCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~ 38 (329)
..++-|+|++|+|||+|+.+++...... -..++|+.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 4578899999999999999999765322 13567766
No 482
>PRK04328 hypothetical protein; Provisional
Probab=96.42 E-value=0.0051 Score=52.30 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|.|++|+|||+|+.+++.....+-..++|+.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 357899999999999999999887555556677765
No 483
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.42 E-value=0.033 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.305 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
-|.|+|++|+|||++|+.+++.-
T Consensus 221 pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 221 TVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CEEEECCCCccHHHHHHHHHHhC
Confidence 47899999999999999998764
No 484
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.42 E-value=0.021 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
...++|+|++|+|||||++-++..+
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998765
No 485
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.42 E-value=0.011 Score=55.26 Aligned_cols=28 Identities=21% Similarity=0.052 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF 31 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~ 31 (329)
..+.|+|++|+|||+|++.+++.+...+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~ 444 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNN 444 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcC
Confidence 3468999999999999999998765433
No 486
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.41 E-value=0.016 Score=55.90 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
...++|+|++|+|||||++-++..+
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3568999999999999999998754
No 487
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.41 E-value=0.0049 Score=50.60 Aligned_cols=24 Identities=17% Similarity=-0.092 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++.|+|+.|.||||+.+.++..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999988753
No 488
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.41 E-value=0.031 Score=48.72 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..++++.|+.|.|||||.+.++..+.
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 35889999999999999999987653
No 489
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.40 E-value=0.0058 Score=52.59 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
++|+|.|-||+||||++..++..+...-..+..+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46777799999999999999998876544444444
No 490
>PRK02496 adk adenylate kinase; Provisional
Probab=96.40 E-value=0.003 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.++|.|++|+||||+++.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998875
No 491
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.40 E-value=0.13 Score=49.14 Aligned_cols=145 Identities=12% Similarity=0.132 Sum_probs=83.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh-----cCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS-----RRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS 78 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 78 (329)
.++=|.|-+|+|||..+..+.+.++ ..-+...|+. .. .-.-..+.+++..|...+...... .....+.+.
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-IN-gm~l~~~~~~Y~~I~~~lsg~~~~---~~~al~~L~ 497 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-IN-GLRLASPREIYEKIWEALSGERVT---WDAALEALN 497 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ec-ceeecCHHHHHHHHHHhcccCccc---HHHHHHHHH
Confidence 4678999999999999999988653 2233333332 00 112345778888887777665432 112344444
Q ss_pred hhhc-----CceEEEEEecCCCh-----hhHHHHhcccCCCCCCcEEEE-EeCchhHH--Hhc-------CCCeEEEecC
Q 020206 79 KRLT-----RKKVLIVFDDVNHP-----RQIEFLIGNLDWFASGSRILI-TARDKQAL--INC-------GVNKIYQIKE 138 (329)
Q Consensus 79 ~~~~-----~~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ili-tsr~~~~~--~~~-------~~~~~~~l~~ 138 (329)
.++. .+.+++++|+++.. +-+-.++... ..++++++| +--+...+ ..+ -+.+.+.+.+
T Consensus 498 ~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp--t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~p 575 (767)
T KOG1514|consen 498 FRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP--TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQP 575 (767)
T ss_pred HhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC--cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCC
Confidence 4333 45789999998532 2222222221 134565443 32222111 111 1345788889
Q ss_pred CChhhhHHHHhhhhcCC
Q 020206 139 LVHVDALKLLNQCAFGR 155 (329)
Q Consensus 139 l~~~e~~~ll~~~~~~~ 155 (329)
.+.++..+++..++.+.
T Consensus 576 Yth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 576 YTHEQLQEIISARLKGL 592 (767)
T ss_pred CCHHHHHHHHHHhhcch
Confidence 99999999999888443
No 492
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.39 E-value=0.017 Score=55.76 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
...++|+|++|+|||||++-++..+
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4578999999999999999988643
No 493
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.38 E-value=0.0049 Score=52.19 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
+|+|.|.+|+||||++..+.+.+...-..+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI 33 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVV 33 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 589999999999999999998876543334443
No 494
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.38 E-value=0.0061 Score=50.07 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.|+|+|-||+||||++..++.++.++..+.+...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvV 35 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVV 35 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 5899999999999999998877766654445444
No 495
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.38 E-value=0.0039 Score=54.94 Aligned_cols=35 Identities=26% Similarity=0.177 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
..|.+.+.||+|+|||+||..+++.+..+.|+...
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 35889999999999999999999999987775544
No 496
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.37 E-value=0.006 Score=54.94 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
....++|.|+||+|||.|.+.+.+.++.....+..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~ 55 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLV 55 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEE
Confidence 35678999999999999999999888765433333
No 497
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.37 E-value=0.029 Score=56.55 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+++|+|.+|+||||+.+.+.+.+...
T Consensus 362 ~~v~vv~G~AGTGKTT~l~~~~~~~e~~ 389 (988)
T PRK13889 362 RDLGVVVGYAGTGKSAMLGVAREAWEAA 389 (988)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 3578899999999999988777665543
No 498
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.36 E-value=0.009 Score=52.14 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=29.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
..|.|.+.||+|+|||+||..+++.+..+-+++..
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~i 98 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAI 98 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceee
Confidence 45889999999999999999999999877665443
No 499
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.012 Score=48.32 Aligned_cols=52 Identities=23% Similarity=0.237 Sum_probs=38.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELL 57 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 57 (329)
....|+|-|.-|+||||.++.+.+.+..+.-.+++.. .+....+.+.++.++
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~tr----EP~~~~ige~iR~~l 53 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTR----EPGGTPIGEKIRELL 53 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe----CCCCChHHHHHHHHH
Confidence 4578999999999999999999999988876777766 222344455555443
No 500
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.35 E-value=0.016 Score=55.14 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
...++|+|++|+|||||++-++..+
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999987644
Done!