Query 020206
Match_columns 329
No_of_seqs 150 out of 1656
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 13:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.2E-39 1.1E-43 303.6 19.2 278 2-293 151-471 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-35 6.1E-40 303.2 21.4 279 2-293 146-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.3E-34 4.5E-39 278.9 17.0 256 2-284 149-434 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.3E-34 1.8E-38 271.3 19.9 271 2-289 146-448 (591)
5 2qen_A Walker-type ATPase; unk 99.8 9E-19 3.1E-23 155.4 19.7 266 4-287 32-349 (350)
6 2fna_A Conserved hypothetical 99.8 2.3E-18 8E-23 153.1 20.0 266 4-286 31-356 (357)
7 1w5s_A Origin recognition comp 99.7 2.3E-16 7.8E-21 143.1 20.3 270 3-282 50-387 (412)
8 2qby_B CDC6 homolog 3, cell di 99.6 3.8E-14 1.3E-18 127.3 22.6 254 3-271 45-339 (384)
9 1fnn_A CDC6P, cell division co 99.6 1.3E-13 4.4E-18 123.9 22.3 278 4-292 45-386 (389)
10 2qby_A CDC6 homolog 1, cell di 99.6 6.1E-14 2.1E-18 125.8 20.1 258 3-271 45-348 (386)
11 2v1u_A Cell division control p 99.5 1.1E-12 3.8E-17 117.6 19.8 258 3-271 44-351 (387)
12 1njg_A DNA polymerase III subu 99.4 2.1E-11 7.3E-16 101.8 16.1 173 4-187 46-231 (250)
13 2chg_A Replication factor C sm 99.3 1.3E-10 4.3E-15 95.7 15.6 164 4-187 39-207 (226)
14 1sxj_B Activator 1 37 kDa subu 99.1 1.5E-09 5.2E-14 94.7 16.2 159 4-183 43-208 (323)
15 1hqc_A RUVB; extended AAA-ATPa 99.1 9.3E-09 3.2E-13 89.8 19.1 237 4-284 39-310 (324)
16 1iqp_A RFCS; clamp loader, ext 99.1 2.7E-09 9.3E-14 93.2 14.3 163 4-187 47-215 (327)
17 2chq_A Replication factor C sm 99.0 9.7E-09 3.3E-13 89.4 16.1 161 5-186 40-206 (319)
18 1jr3_A DNA polymerase III subu 98.9 1.6E-08 5.3E-13 90.1 14.8 172 4-186 39-223 (373)
19 3pfi_A Holliday junction ATP-d 98.9 3.6E-08 1.2E-12 86.7 15.9 236 4-277 56-319 (338)
20 1a5t_A Delta prime, HOLB; zinc 98.9 5.1E-08 1.8E-12 85.5 16.4 96 83-185 107-206 (334)
21 3bos_A Putative DNA replicatio 98.9 4.2E-09 1.4E-13 87.8 8.9 154 3-187 52-220 (242)
22 2z4s_A Chromosomal replication 98.9 9.5E-09 3.3E-13 93.5 11.5 164 3-187 130-309 (440)
23 1l8q_A Chromosomal replication 98.8 1.2E-07 4.1E-12 82.8 14.5 160 3-186 37-210 (324)
24 3te6_A Regulatory protein SIR3 98.8 6.5E-08 2.2E-12 83.5 12.2 146 3-152 45-211 (318)
25 1sxj_A Activator 1 95 kDa subu 98.8 1.6E-07 5.6E-12 87.2 15.6 168 3-186 77-254 (516)
26 2qz4_A Paraplegin; AAA+, SPG7, 98.8 4E-07 1.4E-11 76.8 16.7 160 3-185 39-223 (262)
27 3uk6_A RUVB-like 2; hexameric 98.8 3.6E-07 1.2E-11 81.1 16.8 99 85-186 190-305 (368)
28 1d2n_A N-ethylmaleimide-sensit 98.7 4.1E-07 1.4E-11 77.3 16.4 146 3-176 64-229 (272)
29 1sxj_D Activator 1 41 kDa subu 98.7 5.8E-07 2E-11 79.2 17.9 170 5-185 60-236 (353)
30 3h4m_A Proteasome-activating n 98.7 1.9E-07 6.5E-12 79.9 14.1 156 3-184 51-231 (285)
31 3pvs_A Replication-associated 98.7 1.5E-07 5E-12 85.6 12.8 157 4-187 51-218 (447)
32 1xwi_A SKD1 protein; VPS4B, AA 98.7 1.6E-06 5.6E-11 75.5 18.4 157 4-186 46-225 (322)
33 3eie_A Vacuolar protein sortin 98.7 1.3E-06 4.5E-11 76.1 17.7 158 3-186 51-230 (322)
34 2qp9_X Vacuolar protein sortin 98.7 9.2E-07 3.2E-11 78.1 16.2 158 4-186 85-263 (355)
35 3syl_A Protein CBBX; photosynt 98.6 3.3E-07 1.1E-11 79.4 12.9 148 4-174 68-237 (309)
36 2zan_A Vacuolar protein sortin 98.6 1.4E-06 4.9E-11 79.2 16.8 161 3-186 167-347 (444)
37 1sxj_C Activator 1 40 kDa subu 98.6 1.8E-06 6E-11 75.9 16.1 159 6-185 49-213 (340)
38 1jbk_A CLPB protein; beta barr 98.6 1.2E-07 4.1E-12 75.7 7.7 27 3-29 43-69 (195)
39 3u61_B DNA polymerase accessor 98.6 3.9E-07 1.3E-11 79.5 11.6 160 3-187 48-219 (324)
40 1sxj_E Activator 1 40 kDa subu 98.6 7.6E-07 2.6E-11 78.6 13.6 103 83-187 133-240 (354)
41 3d8b_A Fidgetin-like protein 1 98.6 3E-06 1E-10 74.9 16.8 160 3-186 117-297 (357)
42 1in4_A RUVB, holliday junction 98.5 6.3E-06 2.2E-10 72.1 17.9 142 130-279 171-318 (334)
43 4b4t_J 26S protease regulatory 98.5 5.5E-06 1.9E-10 73.4 16.5 148 3-178 182-355 (405)
44 3vfd_A Spastin; ATPase, microt 98.5 7.4E-06 2.5E-10 73.3 17.6 155 4-184 149-326 (389)
45 3b9p_A CG5977-PA, isoform A; A 98.5 5.2E-06 1.8E-10 71.3 15.2 157 3-185 54-234 (297)
46 3cf0_A Transitional endoplasmi 98.4 7.7E-06 2.6E-10 70.5 15.3 151 3-179 49-223 (301)
47 4b4t_L 26S protease subunit RP 98.4 6.8E-06 2.3E-10 73.9 15.2 148 3-178 215-388 (437)
48 2gno_A DNA polymerase III, gam 98.4 2.7E-06 9.2E-11 73.3 10.9 128 3-152 18-152 (305)
49 4b4t_H 26S protease regulatory 98.4 2.3E-05 7.8E-10 70.5 17.0 147 3-177 243-415 (467)
50 2w58_A DNAI, primosome compone 98.3 1.4E-06 4.8E-11 70.4 8.4 35 4-38 55-89 (202)
51 3ec2_A DNA replication protein 98.3 1.1E-06 3.7E-11 69.7 7.6 100 3-122 38-143 (180)
52 4b4t_K 26S protease regulatory 98.3 1E-05 3.5E-10 72.6 13.8 27 3-29 206-232 (428)
53 4b4t_M 26S protease regulatory 98.3 7.6E-06 2.6E-10 73.5 12.6 147 3-177 215-387 (434)
54 3t15_A Ribulose bisphosphate c 98.3 3.8E-06 1.3E-10 72.1 10.2 27 2-28 35-61 (293)
55 4b4t_I 26S protease regulatory 98.3 1.5E-05 5E-10 71.0 13.7 147 3-177 216-388 (437)
56 1ofh_A ATP-dependent HSL prote 98.3 6.4E-06 2.2E-10 71.1 11.2 26 3-28 50-75 (310)
57 2p65_A Hypothetical protein PF 98.2 6.2E-06 2.1E-10 65.3 10.0 27 3-29 43-69 (187)
58 3hu3_A Transitional endoplasmi 98.2 1.2E-05 4.1E-10 73.9 12.7 154 4-183 239-414 (489)
59 2ce7_A Cell division protein F 98.2 3.3E-05 1.1E-09 70.4 15.2 154 4-183 50-228 (476)
60 1lv7_A FTSH; alpha/beta domain 98.2 6.1E-06 2.1E-10 69.4 9.6 155 4-184 46-225 (257)
61 4fcw_A Chaperone protein CLPB; 98.2 4.1E-05 1.4E-09 66.1 14.8 34 4-37 48-81 (311)
62 3n70_A Transport activator; si 98.0 1.2E-05 4E-10 61.3 7.3 24 4-27 25-48 (145)
63 2kjq_A DNAA-related protein; s 98.0 3.6E-06 1.2E-10 64.5 4.2 35 4-38 37-71 (149)
64 3pxg_A Negative regulator of g 98.0 3.3E-05 1.1E-09 70.7 10.7 146 4-174 202-362 (468)
65 2c9o_A RUVB-like 1; hexameric 98.0 0.00029 1E-08 64.3 16.9 96 86-184 297-410 (456)
66 3m6a_A ATP-dependent protease 98.0 3.6E-05 1.2E-09 71.8 11.0 27 3-29 108-134 (543)
67 1ojl_A Transcriptional regulat 98.0 0.00029 1E-08 60.6 15.7 25 4-28 26-50 (304)
68 2r62_A Cell division protease 97.9 9.2E-06 3.1E-10 68.7 5.3 26 4-29 45-70 (268)
69 3pxi_A Negative regulator of g 97.9 3.9E-05 1.3E-09 74.7 10.4 125 5-152 523-675 (758)
70 1iy2_A ATP-dependent metallopr 97.9 0.00021 7.3E-09 60.6 13.7 152 6-183 76-252 (278)
71 1ixz_A ATP-dependent metallopr 97.9 0.0004 1.4E-08 58.0 14.9 147 5-177 51-221 (254)
72 3cf2_A TER ATPase, transitiona 97.9 0.00012 4.1E-09 70.7 13.0 151 3-179 238-409 (806)
73 2qgz_A Helicase loader, putati 97.9 1.2E-05 4E-10 69.5 5.5 36 3-38 152-188 (308)
74 1um8_A ATP-dependent CLP prote 97.9 5.9E-05 2E-09 67.1 10.2 25 4-28 73-97 (376)
75 2bjv_A PSP operon transcriptio 97.9 5.4E-05 1.8E-09 63.8 9.3 25 4-28 30-54 (265)
76 2x8a_A Nuclear valosin-contain 97.9 0.00026 8.9E-09 59.9 13.3 125 6-152 47-191 (274)
77 1jr3_D DNA polymerase III, del 97.8 0.00065 2.2E-08 59.4 15.7 157 3-185 18-186 (343)
78 1qvr_A CLPB protein; coiled co 97.8 5.8E-05 2E-09 74.4 9.3 150 4-175 192-370 (854)
79 2dhr_A FTSH; AAA+ protein, hex 97.8 0.00028 9.6E-09 64.7 12.8 152 5-183 66-243 (499)
80 3pxi_A Negative regulator of g 97.8 0.00013 4.3E-09 71.1 10.7 124 4-152 202-338 (758)
81 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00026 9.1E-09 68.8 11.4 128 4-152 208-362 (758)
82 3co5_A Putative two-component 97.6 2.7E-05 9.1E-10 59.1 2.7 24 4-27 28-51 (143)
83 3umf_A Adenylate kinase; rossm 97.6 0.00033 1.1E-08 57.0 9.3 27 1-27 27-53 (217)
84 1g5t_A COB(I)alamin adenosyltr 97.6 0.00012 4.2E-09 58.1 6.3 118 5-123 30-164 (196)
85 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00021 7.3E-09 69.5 9.3 23 5-27 490-512 (758)
86 3sr0_A Adenylate kinase; phosp 97.5 0.00015 5.2E-09 58.5 6.4 23 5-27 2-24 (206)
87 2orw_A Thymidine kinase; TMTK, 97.5 0.00016 5.5E-09 57.3 6.5 36 2-37 2-37 (184)
88 2cvh_A DNA repair and recombin 97.5 0.00033 1.1E-08 57.0 8.3 33 3-38 20-52 (220)
89 3hws_A ATP-dependent CLP prote 97.5 0.00037 1.3E-08 61.5 8.7 25 4-28 52-76 (363)
90 2b8t_A Thymidine kinase; deoxy 97.5 4.8E-05 1.6E-09 62.2 2.6 34 4-37 13-46 (223)
91 1qhx_A CPT, protein (chloramph 97.5 7.6E-05 2.6E-09 58.7 3.7 27 2-28 2-28 (178)
92 3cf2_A TER ATPase, transitiona 97.4 0.00029 9.8E-09 68.2 7.9 148 4-177 512-683 (806)
93 1qvr_A CLPB protein; coiled co 97.4 0.00092 3.2E-08 65.9 11.5 27 4-30 589-615 (854)
94 2vhj_A Ntpase P4, P4; non- hyd 97.4 5.9E-05 2E-09 64.7 2.5 23 4-26 124-146 (331)
95 1ex7_A Guanylate kinase; subst 97.4 7.1E-05 2.4E-09 59.3 2.5 29 3-31 1-29 (186)
96 3nbx_X ATPase RAVA; AAA+ ATPas 97.3 0.00098 3.3E-08 61.2 10.2 25 4-28 42-66 (500)
97 3kb2_A SPBC2 prophage-derived 97.3 0.00018 6.2E-09 56.0 3.8 25 4-28 2-26 (173)
98 3hr8_A Protein RECA; alpha and 97.2 0.00073 2.5E-08 59.2 7.6 36 3-38 61-96 (356)
99 3trf_A Shikimate kinase, SK; a 97.2 0.00022 7.4E-09 56.4 3.8 25 3-27 5-29 (185)
100 3jvv_A Twitching mobility prot 97.2 0.00061 2.1E-08 59.8 6.8 109 4-124 124-233 (356)
101 1nks_A Adenylate kinase; therm 97.2 0.00042 1.4E-08 55.0 5.3 27 4-30 2-28 (194)
102 1kht_A Adenylate kinase; phosp 97.2 0.00024 8.4E-09 56.3 3.8 28 2-29 2-29 (192)
103 1ly1_A Polynucleotide kinase; 97.2 0.00026 8.9E-09 55.6 3.6 23 3-25 2-24 (181)
104 2rhm_A Putative kinase; P-loop 97.1 0.00032 1.1E-08 55.7 4.2 26 2-27 4-29 (193)
105 1tev_A UMP-CMP kinase; ploop, 97.1 0.00031 1.1E-08 55.9 3.9 27 1-27 1-27 (196)
106 3iij_A Coilin-interacting nucl 97.1 0.00029 9.9E-09 55.5 3.7 25 3-27 11-35 (180)
107 1vma_A Cell division protein F 97.1 0.0014 4.7E-08 56.3 7.9 35 3-37 104-138 (306)
108 2plr_A DTMP kinase, probable t 97.1 0.00066 2.3E-08 54.7 5.7 30 2-31 3-32 (213)
109 3vaa_A Shikimate kinase, SK; s 97.1 0.00036 1.2E-08 56.0 4.0 25 3-27 25-49 (199)
110 2yvu_A Probable adenylyl-sulfa 97.1 0.00067 2.3E-08 53.7 5.4 28 3-30 13-40 (186)
111 2c95_A Adenylate kinase 1; tra 97.1 0.00039 1.3E-08 55.4 4.0 26 2-27 8-33 (196)
112 1ypw_A Transitional endoplasmi 97.1 0.0013 4.3E-08 64.3 8.3 26 3-28 238-263 (806)
113 1nn5_A Similar to deoxythymidy 97.1 0.00068 2.3E-08 54.8 5.3 29 3-31 9-37 (215)
114 3lw7_A Adenylate kinase relate 97.0 0.00034 1.2E-08 54.5 3.4 22 4-26 2-23 (179)
115 3uie_A Adenylyl-sulfate kinase 97.0 0.00076 2.6E-08 54.1 5.4 26 3-28 25-50 (200)
116 3t61_A Gluconokinase; PSI-biol 97.0 0.00034 1.2E-08 56.2 3.4 25 3-27 18-42 (202)
117 1kag_A SKI, shikimate kinase I 97.0 0.00036 1.2E-08 54.4 3.1 26 3-28 4-29 (173)
118 2r2a_A Uncharacterized protein 97.0 0.0028 9.5E-08 50.7 8.3 23 5-27 7-29 (199)
119 3a00_A Guanylate kinase, GMP k 97.0 0.00035 1.2E-08 55.4 3.1 29 3-31 1-29 (186)
120 1xjc_A MOBB protein homolog; s 97.0 0.0008 2.7E-08 52.3 4.9 29 2-30 3-31 (169)
121 2ze6_A Isopentenyl transferase 97.0 0.00048 1.6E-08 57.6 3.9 25 4-28 2-26 (253)
122 1kgd_A CASK, peripheral plasma 97.0 0.00044 1.5E-08 54.5 3.4 26 3-28 5-30 (180)
123 3e1s_A Exodeoxyribonuclease V, 97.0 0.0035 1.2E-07 58.7 10.0 35 3-37 204-238 (574)
124 1zp6_A Hypothetical protein AT 97.0 0.00052 1.8E-08 54.5 3.7 24 3-26 9-32 (191)
125 1v5w_A DMC1, meiotic recombina 96.9 0.0021 7.3E-08 56.2 7.9 36 3-38 122-163 (343)
126 1via_A Shikimate kinase; struc 96.9 0.00047 1.6E-08 54.0 3.3 25 4-28 5-29 (175)
127 2iyv_A Shikimate kinase, SK; t 96.9 0.00045 1.5E-08 54.5 3.2 25 4-28 3-27 (184)
128 3ney_A 55 kDa erythrocyte memb 96.9 0.00057 1.9E-08 54.6 3.8 27 2-28 18-44 (197)
129 3tau_A Guanylate kinase, GMP k 96.9 0.00055 1.9E-08 55.3 3.8 27 2-28 7-33 (208)
130 1y63_A LMAJ004144AAA protein; 96.9 0.00063 2.2E-08 53.8 4.0 24 3-26 10-33 (184)
131 3cm0_A Adenylate kinase; ATP-b 96.9 0.00064 2.2E-08 53.7 4.0 25 3-27 4-28 (186)
132 2z0h_A DTMP kinase, thymidylat 96.9 0.0014 4.8E-08 52.1 6.1 26 5-30 2-27 (197)
133 2bwj_A Adenylate kinase 5; pho 96.9 0.00059 2E-08 54.5 3.8 26 3-28 12-37 (199)
134 2nq2_C Hypothetical ABC transp 96.9 0.00076 2.6E-08 56.3 4.5 24 4-27 32-55 (253)
135 4eun_A Thermoresistant glucoki 96.9 0.00064 2.2E-08 54.5 3.9 25 3-27 29-53 (200)
136 3dm5_A SRP54, signal recogniti 96.9 0.0034 1.2E-07 56.4 9.0 35 3-37 100-134 (443)
137 2wwf_A Thymidilate kinase, put 96.9 0.00098 3.3E-08 53.8 5.1 28 3-30 10-37 (212)
138 2qor_A Guanylate kinase; phosp 96.9 0.00047 1.6E-08 55.5 3.1 26 3-28 12-37 (204)
139 3io5_A Recombination and repai 96.9 0.00084 2.9E-08 57.4 4.7 34 5-38 30-65 (333)
140 1ukz_A Uridylate kinase; trans 96.9 0.00063 2.1E-08 54.6 3.8 26 2-27 14-39 (203)
141 1knq_A Gluconate kinase; ALFA/ 96.9 0.0008 2.7E-08 52.6 4.2 25 3-27 8-32 (175)
142 2px0_A Flagellar biosynthesis 96.9 0.0074 2.5E-07 51.5 10.5 27 3-29 105-131 (296)
143 1qf9_A UMP/CMP kinase, protein 96.9 0.00082 2.8E-08 53.3 4.2 25 3-27 6-30 (194)
144 2vli_A Antibiotic resistance p 96.9 0.0004 1.4E-08 54.7 2.3 26 3-28 5-30 (183)
145 1e6c_A Shikimate kinase; phosp 96.9 0.0006 2.1E-08 53.1 3.3 25 4-28 3-27 (173)
146 3exa_A TRNA delta(2)-isopenten 96.9 0.00057 2E-08 58.4 3.3 27 1-27 1-27 (322)
147 4edh_A DTMP kinase, thymidylat 96.8 0.0024 8.1E-08 51.8 6.8 36 2-37 5-40 (213)
148 1gvn_B Zeta; postsegregational 96.8 0.00067 2.3E-08 57.8 3.6 25 3-27 33-57 (287)
149 2cdn_A Adenylate kinase; phosp 96.8 0.00088 3E-08 53.7 4.1 26 3-28 20-45 (201)
150 1aky_A Adenylate kinase; ATP:A 96.8 0.00081 2.8E-08 54.8 3.9 27 2-28 3-29 (220)
151 3tr0_A Guanylate kinase, GMP k 96.8 0.00078 2.7E-08 54.0 3.8 25 3-27 7-31 (205)
152 2pjz_A Hypothetical protein ST 96.8 0.0052 1.8E-07 51.4 8.9 24 4-27 31-54 (263)
153 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0013 4.4E-08 55.1 5.2 26 3-28 4-29 (260)
154 2dr3_A UPF0273 protein PH0284; 96.8 0.0012 4.2E-08 54.5 5.0 35 4-38 24-58 (247)
155 1zuh_A Shikimate kinase; alpha 96.8 0.0009 3.1E-08 51.9 3.8 25 4-28 8-32 (168)
156 2bbw_A Adenylate kinase 4, AK4 96.8 0.00088 3E-08 55.6 3.9 26 3-28 27-52 (246)
157 3tlx_A Adenylate kinase 2; str 96.8 0.00098 3.4E-08 55.3 4.2 26 2-27 28-53 (243)
158 2jaq_A Deoxyguanosine kinase; 96.8 0.00089 3E-08 53.6 3.8 24 5-28 2-25 (205)
159 1cke_A CK, MSSA, protein (cyti 96.8 0.00099 3.4E-08 54.4 4.1 25 3-27 5-29 (227)
160 3c8u_A Fructokinase; YP_612366 96.8 0.00098 3.4E-08 53.8 4.0 27 3-29 22-48 (208)
161 1rz3_A Hypothetical protein rb 96.8 0.0017 6E-08 52.0 5.4 27 3-29 22-48 (201)
162 2pbr_A DTMP kinase, thymidylat 96.8 0.0025 8.5E-08 50.5 6.3 25 5-29 2-26 (195)
163 2j41_A Guanylate kinase; GMP, 96.8 0.00095 3.2E-08 53.6 3.8 25 3-27 6-30 (207)
164 1zd8_A GTP:AMP phosphotransfer 96.8 0.00081 2.8E-08 55.1 3.4 25 3-27 7-31 (227)
165 3bh0_A DNAB-like replicative h 96.7 0.0036 1.2E-07 54.0 7.5 50 3-58 68-117 (315)
166 1zak_A Adenylate kinase; ATP:A 96.7 0.00093 3.2E-08 54.5 3.6 26 3-28 5-30 (222)
167 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0012 4.2E-08 53.9 4.4 35 4-38 24-58 (235)
168 3kl4_A SRP54, signal recogniti 96.7 0.0031 1.1E-07 56.6 7.3 35 3-37 97-131 (433)
169 1lvg_A Guanylate kinase, GMP k 96.7 0.00088 3E-08 53.7 3.3 26 3-28 4-29 (198)
170 3upu_A ATP-dependent DNA helic 96.7 0.0077 2.6E-07 54.9 10.0 29 4-32 46-74 (459)
171 1sky_E F1-ATPase, F1-ATP synth 96.7 0.005 1.7E-07 55.6 8.4 33 4-36 152-184 (473)
172 4eaq_A DTMP kinase, thymidylat 96.7 0.0027 9.2E-08 52.1 6.2 27 3-29 26-52 (229)
173 1rj9_A FTSY, signal recognitio 96.7 0.002 6.7E-08 55.3 5.5 34 3-36 102-135 (304)
174 3fwy_A Light-independent proto 96.7 0.0018 6.3E-08 55.7 5.3 37 2-38 47-83 (314)
175 3fb4_A Adenylate kinase; psych 96.7 0.0011 3.8E-08 53.7 3.8 23 5-27 2-24 (216)
176 1uf9_A TT1252 protein; P-loop, 96.7 0.0012 4.1E-08 52.8 3.9 25 2-26 7-31 (203)
177 3asz_A Uridine kinase; cytidin 96.7 0.0013 4.6E-08 53.0 4.2 26 3-28 6-31 (211)
178 2bdt_A BH3686; alpha-beta prot 96.7 0.0011 3.8E-08 52.5 3.6 22 4-25 3-24 (189)
179 4tmk_A Protein (thymidylate ki 96.7 0.0031 1.1E-07 51.0 6.3 53 2-58 2-55 (213)
180 2pt5_A Shikimate kinase, SK; a 96.7 0.0012 4.2E-08 51.1 3.7 24 5-28 2-25 (168)
181 1tue_A Replication protein E1; 96.7 0.00089 3E-08 53.5 2.9 25 4-28 59-83 (212)
182 2v54_A DTMP kinase, thymidylat 96.7 0.0012 4.2E-08 52.8 3.8 26 2-27 3-28 (204)
183 1ye8_A Protein THEP1, hypothet 96.7 0.0013 4.4E-08 51.7 3.7 24 5-28 2-25 (178)
184 3lv8_A DTMP kinase, thymidylat 96.6 0.0035 1.2E-07 51.6 6.3 36 3-38 27-63 (236)
185 1odf_A YGR205W, hypothetical 3 96.6 0.0016 5.3E-08 55.5 4.3 28 2-29 30-57 (290)
186 1uj2_A Uridine-cytidine kinase 96.6 0.0014 4.7E-08 54.7 3.9 26 3-28 22-47 (252)
187 1u94_A RECA protein, recombina 96.6 0.002 6.7E-08 56.6 5.0 36 3-38 63-98 (356)
188 1np6_A Molybdopterin-guanine d 96.6 0.0023 8E-08 50.0 4.9 28 3-30 6-33 (174)
189 3dl0_A Adenylate kinase; phosp 96.6 0.0012 4.1E-08 53.5 3.4 23 5-27 2-24 (216)
190 3foz_A TRNA delta(2)-isopenten 96.6 0.0014 4.8E-08 55.9 3.8 25 3-27 10-34 (316)
191 2zr9_A Protein RECA, recombina 96.6 0.002 6.9E-08 56.4 5.0 36 3-38 61-96 (349)
192 2if2_A Dephospho-COA kinase; a 96.6 0.0013 4.3E-08 52.8 3.4 22 4-25 2-23 (204)
193 2ewv_A Twitching motility prot 96.6 0.0051 1.7E-07 54.4 7.6 108 3-122 136-244 (372)
194 2p5t_B PEZT; postsegregational 96.6 0.001 3.5E-08 55.5 3.0 26 3-28 32-57 (253)
195 3tui_C Methionine import ATP-b 96.6 0.0031 1E-07 55.3 6.0 24 3-26 54-77 (366)
196 2j9r_A Thymidine kinase; TK1, 96.6 0.0096 3.3E-07 47.9 8.4 109 3-122 28-138 (214)
197 1gtv_A TMK, thymidylate kinase 96.6 0.00081 2.8E-08 54.4 2.1 26 4-29 1-26 (214)
198 3r20_A Cytidylate kinase; stru 96.6 0.0016 5.5E-08 53.4 3.8 26 3-28 9-34 (233)
199 2zts_A Putative uncharacterize 96.5 0.0024 8.1E-08 52.8 5.0 35 4-38 31-66 (251)
200 2qt1_A Nicotinamide riboside k 96.5 0.0014 4.8E-08 52.7 3.4 24 3-26 21-44 (207)
201 1cr0_A DNA primase/helicase; R 96.5 0.0024 8.3E-08 54.5 5.0 36 3-38 35-71 (296)
202 3b9q_A Chloroplast SRP recepto 96.5 0.0028 9.7E-08 54.3 5.3 34 3-36 100-133 (302)
203 3a8t_A Adenylate isopentenyltr 96.5 0.0012 4E-08 57.2 2.8 25 3-27 40-64 (339)
204 1m7g_A Adenylylsulfate kinase; 96.5 0.0021 7.1E-08 52.0 4.2 26 3-28 25-50 (211)
205 2pez_A Bifunctional 3'-phospho 96.5 0.0033 1.1E-07 49.2 5.3 27 3-29 5-31 (179)
206 3v9p_A DTMP kinase, thymidylat 96.5 0.0031 1.1E-07 51.5 5.3 28 3-30 25-52 (227)
207 1s96_A Guanylate kinase, GMP k 96.5 0.0017 5.8E-08 52.9 3.6 26 3-28 16-41 (219)
208 4a1f_A DNAB helicase, replicat 96.5 0.006 2.1E-07 52.9 7.3 50 4-59 47-96 (338)
209 1vht_A Dephospho-COA kinase; s 96.5 0.0019 6.4E-08 52.5 3.9 24 2-25 3-26 (218)
210 3d3q_A TRNA delta(2)-isopenten 96.5 0.0017 5.7E-08 56.3 3.7 25 4-28 8-32 (340)
211 4gp7_A Metallophosphoesterase; 96.5 0.0015 5E-08 51.0 3.1 21 3-23 9-29 (171)
212 1jjv_A Dephospho-COA kinase; P 96.5 0.0014 4.9E-08 52.6 3.1 22 4-25 3-24 (206)
213 3crm_A TRNA delta(2)-isopenten 96.5 0.0016 5.5E-08 56.0 3.5 24 4-27 6-29 (323)
214 1zu4_A FTSY; GTPase, signal re 96.5 0.0033 1.1E-07 54.3 5.5 36 2-37 104-139 (320)
215 4a74_A DNA repair and recombin 96.5 0.0029 1E-07 51.6 5.0 26 3-28 25-50 (231)
216 3e70_C DPA, signal recognition 96.5 0.0031 1.1E-07 54.6 5.3 35 3-37 129-163 (328)
217 4e22_A Cytidylate kinase; P-lo 96.5 0.0019 6.4E-08 53.9 3.8 26 3-28 27-52 (252)
218 3ake_A Cytidylate kinase; CMP 96.5 0.0019 6.6E-08 51.8 3.7 25 4-28 3-27 (208)
219 2ehv_A Hypothetical protein PH 96.5 0.0024 8.3E-08 52.8 4.4 36 3-38 30-66 (251)
220 2z43_A DNA repair and recombin 96.4 0.0057 1.9E-07 53.0 6.8 35 4-38 108-148 (324)
221 1n0w_A DNA repair protein RAD5 96.4 0.0032 1.1E-07 51.8 5.0 35 4-38 25-65 (243)
222 1a7j_A Phosphoribulokinase; tr 96.4 0.0011 3.6E-08 56.6 2.0 27 2-28 4-30 (290)
223 2xb4_A Adenylate kinase; ATP-b 96.4 0.0022 7.5E-08 52.3 3.7 23 5-27 2-24 (223)
224 2hf9_A Probable hydrogenase ni 96.4 0.0039 1.3E-07 50.7 5.3 29 2-30 37-65 (226)
225 3ld9_A DTMP kinase, thymidylat 96.4 0.0047 1.6E-07 50.3 5.6 27 3-29 21-47 (223)
226 1z6g_A Guanylate kinase; struc 96.4 0.0018 6.2E-08 52.7 3.2 25 3-27 23-47 (218)
227 1ak2_A Adenylate kinase isoenz 96.4 0.0025 8.6E-08 52.4 4.1 25 4-28 17-41 (233)
228 1yrb_A ATP(GTP)binding protein 96.4 0.0045 1.5E-07 51.6 5.7 35 2-37 13-47 (262)
229 2grj_A Dephospho-COA kinase; T 96.4 0.0024 8.1E-08 50.8 3.8 25 3-27 12-36 (192)
230 2r8r_A Sensor protein; KDPD, P 96.4 0.0047 1.6E-07 50.2 5.5 34 5-38 8-41 (228)
231 1e4v_A Adenylate kinase; trans 96.4 0.0023 7.8E-08 51.8 3.7 23 5-27 2-24 (214)
232 3be4_A Adenylate kinase; malar 96.4 0.0023 7.8E-08 52.0 3.7 24 4-27 6-29 (217)
233 1xp8_A RECA protein, recombina 96.4 0.0033 1.1E-07 55.3 5.0 36 3-38 74-109 (366)
234 2jeo_A Uridine-cytidine kinase 96.4 0.0028 9.4E-08 52.6 4.2 25 3-27 25-49 (245)
235 2qmh_A HPR kinase/phosphorylas 96.4 0.0016 5.5E-08 51.7 2.6 25 3-27 34-58 (205)
236 1nlf_A Regulatory protein REPA 96.3 0.0041 1.4E-07 52.6 5.3 27 3-29 30-56 (279)
237 2wsm_A Hydrogenase expression/ 96.3 0.0043 1.5E-07 50.3 5.2 29 2-30 29-57 (221)
238 2og2_A Putative signal recogni 96.3 0.0043 1.5E-07 54.4 5.3 34 3-36 157-190 (359)
239 3tqc_A Pantothenate kinase; bi 96.3 0.003 1E-07 54.5 4.2 26 3-28 92-117 (321)
240 3aez_A Pantothenate kinase; tr 96.3 0.003 1E-07 54.3 4.3 27 3-29 90-116 (312)
241 4akg_A Glutathione S-transfera 96.3 0.011 3.9E-07 64.3 9.3 23 4-26 1268-1290(2695)
242 1znw_A Guanylate kinase, GMP k 96.3 0.0027 9.2E-08 51.1 3.6 26 3-28 20-45 (207)
243 1ltq_A Polynucleotide kinase; 96.3 0.0026 8.8E-08 54.4 3.6 23 4-26 3-25 (301)
244 2f1r_A Molybdopterin-guanine d 96.3 0.002 6.8E-08 50.3 2.6 27 4-30 3-29 (171)
245 1sq5_A Pantothenate kinase; P- 96.3 0.0057 2E-07 52.5 5.7 26 3-28 80-105 (308)
246 1htw_A HI0065; nucleotide-bind 96.3 0.0034 1.2E-07 48.2 3.9 25 3-27 33-57 (158)
247 2f6r_A COA synthase, bifunctio 96.2 0.0028 9.5E-08 53.8 3.7 23 3-25 75-97 (281)
248 3nwj_A ATSK2; P loop, shikimat 96.2 0.0023 7.8E-08 53.2 3.0 26 3-28 48-73 (250)
249 3llm_A ATP-dependent RNA helic 96.2 0.054 1.9E-06 44.3 11.4 23 3-25 76-98 (235)
250 2xxa_A Signal recognition part 96.2 0.0051 1.7E-07 55.4 5.5 37 2-38 99-136 (433)
251 2eyu_A Twitching motility prot 96.2 0.0048 1.6E-07 51.6 4.9 109 3-123 25-134 (261)
252 2yhs_A FTSY, cell division pro 96.2 0.005 1.7E-07 56.0 5.3 34 3-36 293-326 (503)
253 3hjn_A DTMP kinase, thymidylat 96.2 0.009 3.1E-07 47.7 6.3 34 5-38 2-35 (197)
254 1w36_D RECD, exodeoxyribonucle 96.2 0.041 1.4E-06 51.9 11.7 26 3-28 164-189 (608)
255 3eph_A TRNA isopentenyltransfe 96.2 0.0032 1.1E-07 55.7 3.9 26 3-28 2-27 (409)
256 2ck3_D ATP synthase subunit be 96.2 0.017 5.9E-07 52.1 8.6 53 4-58 154-206 (482)
257 3end_A Light-independent proto 96.2 0.0062 2.1E-07 52.2 5.6 37 2-38 40-76 (307)
258 3p32_A Probable GTPase RV1496/ 96.2 0.0065 2.2E-07 53.4 5.8 36 2-37 78-113 (355)
259 2i3b_A HCR-ntpase, human cance 96.2 0.0032 1.1E-07 50.0 3.4 25 4-28 2-26 (189)
260 3zvl_A Bifunctional polynucleo 96.1 0.0023 7.9E-08 57.5 2.6 26 2-27 257-282 (416)
261 3bgw_A DNAB-like replicative h 96.1 0.0048 1.7E-07 55.9 4.7 36 3-38 197-232 (444)
262 2r44_A Uncharacterized protein 96.1 0.0025 8.4E-08 55.4 2.7 26 4-29 47-72 (331)
263 1ls1_A Signal recognition part 96.1 0.0067 2.3E-07 51.7 5.3 35 3-37 98-132 (295)
264 3lnc_A Guanylate kinase, GMP k 96.1 0.0021 7.3E-08 52.7 2.1 25 3-27 27-52 (231)
265 3bk7_A ABC transporter ATP-bin 96.1 0.011 3.9E-07 55.6 7.2 24 4-27 383-406 (607)
266 3cmu_A Protein RECA, recombina 96.0 0.0068 2.3E-07 64.0 6.0 36 3-38 1427-1462(2050)
267 3iqw_A Tail-anchored protein t 96.0 0.0089 3E-07 51.9 5.9 37 2-38 15-51 (334)
268 2wji_A Ferrous iron transport 96.0 0.0047 1.6E-07 47.6 3.7 24 2-25 2-25 (165)
269 1cp2_A CP2, nitrogenase iron p 96.0 0.0089 3.1E-07 50.1 5.4 35 4-38 2-36 (269)
270 2v3c_C SRP54, signal recogniti 95.9 0.0033 1.1E-07 56.6 2.8 35 3-37 99-133 (432)
271 2i1q_A DNA repair and recombin 95.9 0.012 4.3E-07 50.7 6.4 25 3-27 98-122 (322)
272 1j8m_F SRP54, signal recogniti 95.9 0.0062 2.1E-07 52.0 4.3 36 3-38 98-133 (297)
273 2q6t_A DNAB replication FORK h 95.9 0.013 4.4E-07 53.1 6.7 51 3-59 200-251 (444)
274 2axn_A 6-phosphofructo-2-kinas 95.9 0.0085 2.9E-07 55.4 5.5 32 3-34 35-66 (520)
275 2h92_A Cytidylate kinase; ross 95.9 0.0043 1.5E-07 50.3 3.2 26 2-27 2-27 (219)
276 3fdi_A Uncharacterized protein 95.9 0.0054 1.9E-07 49.1 3.6 27 2-28 5-31 (201)
277 3ozx_A RNAse L inhibitor; ATP 95.9 0.0064 2.2E-07 56.4 4.6 24 3-26 25-48 (538)
278 1fx0_B ATP synthase beta chain 95.9 0.012 4.2E-07 53.3 6.2 53 4-58 166-218 (498)
279 2ocp_A DGK, deoxyguanosine kin 95.9 0.0053 1.8E-07 50.6 3.6 26 3-28 2-27 (241)
280 3zq6_A Putative arsenical pump 95.9 0.014 4.7E-07 50.5 6.4 36 3-38 14-49 (324)
281 2dyk_A GTP-binding protein; GT 95.9 0.0057 2E-07 46.5 3.6 23 4-26 2-24 (161)
282 3io3_A DEHA2D07832P; chaperone 95.9 0.012 4E-07 51.5 5.8 37 2-38 17-55 (348)
283 2r6a_A DNAB helicase, replicat 95.9 0.0066 2.3E-07 55.2 4.5 36 3-38 203-239 (454)
284 1q3t_A Cytidylate kinase; nucl 95.9 0.0065 2.2E-07 49.9 4.1 25 3-27 16-40 (236)
285 2j37_W Signal recognition part 95.8 0.0089 3E-07 54.8 5.3 36 2-37 100-135 (504)
286 2afh_E Nitrogenase iron protei 95.8 0.01 3.4E-07 50.4 5.3 36 3-38 2-37 (289)
287 1q57_A DNA primase/helicase; d 95.8 0.016 5.3E-07 53.5 6.9 51 3-59 242-293 (503)
288 1nij_A Hypothetical protein YJ 95.8 0.0042 1.4E-07 53.7 2.8 26 2-27 3-28 (318)
289 1oix_A RAS-related protein RAB 95.8 0.0057 2E-07 48.4 3.4 23 4-26 30-52 (191)
290 1pzn_A RAD51, DNA repair and r 95.8 0.0083 2.8E-07 52.5 4.7 26 3-28 131-156 (349)
291 3tif_A Uncharacterized ABC tra 95.8 0.0045 1.5E-07 51.0 2.8 24 3-26 31-54 (235)
292 2www_A Methylmalonic aciduria 95.8 0.011 3.9E-07 51.6 5.5 28 3-30 74-101 (349)
293 2ffh_A Protein (FFH); SRP54, s 95.7 0.012 4.2E-07 52.6 5.6 35 3-37 98-132 (425)
294 2pcj_A ABC transporter, lipopr 95.7 0.0048 1.6E-07 50.4 2.7 23 4-26 31-53 (224)
295 2onk_A Molybdate/tungstate ABC 95.7 0.0058 2E-07 50.4 3.3 23 4-26 25-47 (240)
296 3j16_B RLI1P; ribosome recycli 95.7 0.011 3.7E-07 55.7 5.4 123 4-127 379-533 (608)
297 4hlc_A DTMP kinase, thymidylat 95.7 0.022 7.7E-07 45.6 6.6 28 4-31 3-30 (205)
298 1g8p_A Magnesium-chelatase 38 95.7 0.0032 1.1E-07 55.0 1.7 24 5-28 47-70 (350)
299 2f9l_A RAB11B, member RAS onco 95.7 0.0062 2.1E-07 48.5 3.2 23 4-26 6-28 (199)
300 3b85_A Phosphate starvation-in 95.7 0.0046 1.6E-07 49.9 2.4 23 4-26 23-45 (208)
301 3tmk_A Thymidylate kinase; pho 95.7 0.02 6.9E-07 46.3 6.2 27 3-29 5-31 (216)
302 3tqf_A HPR(Ser) kinase; transf 95.7 0.0076 2.6E-07 46.6 3.4 24 3-26 16-39 (181)
303 1svm_A Large T antigen; AAA+ f 95.7 0.0073 2.5E-07 53.3 3.8 25 3-27 169-193 (377)
304 2zej_A Dardarin, leucine-rich 95.6 0.005 1.7E-07 48.3 2.5 21 5-25 4-24 (184)
305 1g41_A Heat shock protein HSLU 95.6 0.006 2.1E-07 54.9 3.2 26 4-29 51-76 (444)
306 2wjg_A FEOB, ferrous iron tran 95.6 0.0082 2.8E-07 47.0 3.7 24 3-26 7-30 (188)
307 2v9p_A Replication protein E1; 95.6 0.0087 3E-07 51.2 4.0 25 3-27 126-150 (305)
308 2cbz_A Multidrug resistance-as 95.6 0.0058 2E-07 50.4 2.8 25 3-27 31-55 (237)
309 3ug7_A Arsenical pump-driving 95.6 0.017 5.8E-07 50.5 5.8 36 3-38 26-61 (349)
310 2qm8_A GTPase/ATPase; G protei 95.6 0.015 5.1E-07 50.6 5.3 35 2-36 54-88 (337)
311 4g1u_C Hemin import ATP-bindin 95.5 0.0055 1.9E-07 51.4 2.5 24 3-26 37-60 (266)
312 3gfo_A Cobalt import ATP-bindi 95.5 0.0061 2.1E-07 51.4 2.7 23 4-26 35-57 (275)
313 3lda_A DNA repair protein RAD5 95.5 0.013 4.6E-07 52.1 5.0 24 4-27 179-202 (400)
314 3vkw_A Replicase large subunit 95.5 0.096 3.3E-06 47.0 10.5 24 2-25 160-183 (446)
315 2p67_A LAO/AO transport system 95.5 0.016 5.4E-07 50.6 5.4 35 2-36 55-89 (341)
316 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0078 2.7E-07 50.0 3.3 23 4-26 30-52 (250)
317 3kjh_A CO dehydrogenase/acetyl 95.5 0.014 4.8E-07 48.1 4.9 33 6-38 3-35 (254)
318 4dzz_A Plasmid partitioning pr 95.5 0.016 5.4E-07 46.2 5.0 35 4-38 2-37 (206)
319 1b0u_A Histidine permease; ABC 95.5 0.0074 2.5E-07 50.5 3.1 24 3-26 32-55 (262)
320 2ged_A SR-beta, signal recogni 95.5 0.01 3.5E-07 46.8 3.8 24 3-26 48-71 (193)
321 1bif_A 6-phosphofructo-2-kinas 95.5 0.015 5.1E-07 53.1 5.3 29 3-31 39-67 (469)
322 2ce2_X GTPase HRAS; signaling 95.5 0.0086 2.9E-07 45.5 3.2 22 5-26 5-26 (166)
323 1mv5_A LMRA, multidrug resista 95.5 0.0079 2.7E-07 49.7 3.1 24 3-26 28-51 (243)
324 1ji0_A ABC transporter; ATP bi 95.5 0.0069 2.4E-07 50.0 2.8 23 4-26 33-55 (240)
325 2lkc_A Translation initiation 95.5 0.0099 3.4E-07 46.0 3.6 24 2-25 7-30 (178)
326 2zu0_C Probable ATP-dependent 95.5 0.0083 2.8E-07 50.4 3.3 24 3-26 46-69 (267)
327 1g6h_A High-affinity branched- 95.4 0.007 2.4E-07 50.5 2.8 23 4-26 34-56 (257)
328 1z2a_A RAS-related protein RAB 95.4 0.009 3.1E-07 45.7 3.2 23 4-26 6-28 (168)
329 1sgw_A Putative ABC transporte 95.4 0.0061 2.1E-07 49.3 2.3 24 4-27 36-59 (214)
330 2ff7_A Alpha-hemolysin translo 95.4 0.0071 2.4E-07 50.1 2.8 23 4-26 36-58 (247)
331 2ga8_A Hypothetical 39.9 kDa p 95.4 0.0079 2.7E-07 52.3 3.1 25 4-28 25-49 (359)
332 1u0j_A DNA replication protein 95.4 0.0095 3.3E-07 49.7 3.5 24 4-27 105-128 (267)
333 1nrj_B SR-beta, signal recogni 95.4 0.011 3.7E-07 47.7 3.8 24 3-26 12-35 (218)
334 2woo_A ATPase GET3; tail-ancho 95.4 0.022 7.7E-07 49.3 6.0 36 3-38 19-54 (329)
335 1xx6_A Thymidine kinase; NESG, 95.4 0.021 7.1E-07 45.2 5.3 35 3-37 8-42 (191)
336 2pze_A Cystic fibrosis transme 95.4 0.0073 2.5E-07 49.4 2.7 24 4-27 35-58 (229)
337 2olj_A Amino acid ABC transpor 95.4 0.0085 2.9E-07 50.1 3.1 24 3-26 50-73 (263)
338 1u8z_A RAS-related protein RAL 95.4 0.013 4.4E-07 44.7 3.9 24 3-26 4-27 (168)
339 2qi9_C Vitamin B12 import ATP- 95.3 0.0056 1.9E-07 50.8 1.8 25 4-28 27-51 (249)
340 1c9k_A COBU, adenosylcobinamid 95.3 0.0088 3E-07 46.8 2.8 22 5-26 1-22 (180)
341 2ghi_A Transport protein; mult 95.3 0.008 2.8E-07 50.2 2.8 25 3-27 46-70 (260)
342 2ixe_A Antigen peptide transpo 95.3 0.008 2.7E-07 50.6 2.8 24 3-26 45-68 (271)
343 1vpl_A ABC transporter, ATP-bi 95.3 0.008 2.7E-07 50.1 2.7 24 3-26 41-64 (256)
344 3hdt_A Putative kinase; struct 95.3 0.015 5E-07 47.4 4.2 26 3-28 14-39 (223)
345 1ihu_A Arsenical pump-driving 95.3 0.02 7E-07 53.8 5.7 37 2-38 7-43 (589)
346 3sop_A Neuronal-specific septi 95.3 0.012 4E-07 49.6 3.6 23 5-27 4-26 (270)
347 1r8s_A ADP-ribosylation factor 95.3 0.012 4E-07 44.9 3.4 21 6-26 3-23 (164)
348 3ea0_A ATPase, para family; al 95.3 0.025 8.5E-07 46.5 5.6 37 2-38 3-41 (245)
349 1p9r_A General secretion pathw 95.3 0.019 6.4E-07 51.5 5.1 34 4-37 168-201 (418)
350 3fvq_A Fe(3+) IONS import ATP- 95.3 0.01 3.5E-07 51.9 3.3 24 3-26 30-53 (359)
351 1p5z_B DCK, deoxycytidine kina 95.3 0.0043 1.5E-07 51.9 0.9 25 3-27 24-48 (263)
352 1z08_A RAS-related protein RAB 95.2 0.011 3.9E-07 45.2 3.2 23 4-26 7-29 (170)
353 2ihy_A ABC transporter, ATP-bi 95.2 0.0089 3.1E-07 50.5 2.7 23 4-26 48-70 (279)
354 3gmt_A Adenylate kinase; ssgci 95.2 0.013 4.3E-07 47.9 3.5 23 5-27 10-32 (230)
355 1m7b_A RND3/RHOE small GTP-bin 95.2 0.011 3.9E-07 46.2 3.2 23 4-26 8-30 (184)
356 2gk6_A Regulator of nonsense t 95.2 0.019 6.5E-07 54.4 5.2 36 3-38 195-230 (624)
357 2yz2_A Putative ABC transporte 95.2 0.0092 3.1E-07 50.1 2.8 24 3-26 33-56 (266)
358 1svi_A GTP-binding protein YSX 95.2 0.013 4.3E-07 46.3 3.4 23 3-25 23-45 (195)
359 3con_A GTPase NRAS; structural 95.2 0.012 4E-07 46.3 3.2 23 4-26 22-44 (190)
360 1ek0_A Protein (GTP-binding pr 95.2 0.012 4.1E-07 45.0 3.2 22 5-26 5-26 (170)
361 1g16_A RAS-related protein SEC 95.2 0.012 4.1E-07 45.0 3.2 22 4-25 4-25 (170)
362 3ihw_A Centg3; RAS, centaurin, 95.2 0.012 4.1E-07 46.2 3.2 22 5-26 22-43 (184)
363 1z0j_A RAB-22, RAS-related pro 95.2 0.012 4.1E-07 45.0 3.2 22 5-26 8-29 (170)
364 2fn4_A P23, RAS-related protei 95.2 0.015 5.2E-07 45.0 3.8 24 3-26 9-32 (181)
365 1wms_A RAB-9, RAB9, RAS-relate 95.2 0.012 4.2E-07 45.4 3.2 23 4-26 8-30 (177)
366 2nzj_A GTP-binding protein REM 95.1 0.015 5.1E-07 44.8 3.7 23 3-25 4-26 (175)
367 1upt_A ARL1, ADP-ribosylation 95.1 0.016 5.6E-07 44.4 3.9 24 3-26 7-30 (171)
368 1ky3_A GTP-binding protein YPT 95.1 0.015 5.1E-07 45.0 3.7 24 3-26 8-31 (182)
369 1kao_A RAP2A; GTP-binding prot 95.1 0.016 5.6E-07 44.0 3.8 24 3-26 3-26 (167)
370 1x6v_B Bifunctional 3'-phospho 95.1 0.022 7.7E-07 53.5 5.3 27 3-29 52-78 (630)
371 3q85_A GTP-binding protein REM 95.1 0.015 5.1E-07 44.5 3.5 22 4-25 3-24 (169)
372 2cjw_A GTP-binding protein GEM 95.1 0.013 4.4E-07 46.4 3.2 23 4-26 7-29 (192)
373 2gj8_A MNME, tRNA modification 95.1 0.012 4.2E-07 45.5 3.0 23 4-26 5-27 (172)
374 3q72_A GTP-binding protein RAD 95.1 0.012 4E-07 45.0 2.9 21 5-25 4-24 (166)
375 3c5c_A RAS-like protein 12; GD 95.1 0.013 4.4E-07 46.1 3.2 22 5-26 23-44 (187)
376 2vp4_A Deoxynucleoside kinase; 95.1 0.0082 2.8E-07 49.1 2.1 24 3-26 20-43 (230)
377 2woj_A ATPase GET3; tail-ancho 95.1 0.041 1.4E-06 48.1 6.6 36 3-38 18-55 (354)
378 2erx_A GTP-binding protein DI- 95.1 0.013 4.4E-07 44.9 3.0 22 4-25 4-25 (172)
379 3kta_A Chromosome segregation 95.0 0.014 4.8E-07 45.6 3.2 24 4-27 27-50 (182)
380 1r2q_A RAS-related protein RAB 95.0 0.014 4.8E-07 44.6 3.2 23 4-26 7-29 (170)
381 2iwr_A Centaurin gamma 1; ANK 95.0 0.011 3.6E-07 45.9 2.5 22 5-26 9-30 (178)
382 1z47_A CYSA, putative ABC-tran 95.0 0.013 4.5E-07 51.2 3.3 23 4-26 42-64 (355)
383 3pqc_A Probable GTP-binding pr 95.0 0.015 5.3E-07 45.6 3.5 24 3-26 23-46 (195)
384 4dkx_A RAS-related protein RAB 95.0 0.014 4.8E-07 47.2 3.2 20 6-25 16-35 (216)
385 3rlf_A Maltose/maltodextrin im 95.0 0.013 4.6E-07 51.6 3.3 24 3-26 29-52 (381)
386 1m2o_B GTP-binding protein SAR 95.0 0.016 5.5E-07 45.6 3.4 23 4-26 24-46 (190)
387 1z0f_A RAB14, member RAS oncog 95.0 0.015 5.2E-07 44.9 3.2 23 4-26 16-38 (179)
388 2y8e_A RAB-protein 6, GH09086P 95.0 0.015 5.1E-07 44.9 3.2 22 5-26 16-37 (179)
389 1g8f_A Sulfate adenylyltransfe 95.0 0.015 5E-07 53.4 3.5 27 3-29 395-421 (511)
390 1c1y_A RAS-related protein RAP 94.9 0.02 6.9E-07 43.6 3.9 23 4-26 4-26 (167)
391 2bme_A RAB4A, RAS-related prot 94.9 0.015 5.2E-07 45.3 3.2 23 4-26 11-33 (186)
392 1fzq_A ADP-ribosylation factor 94.9 0.017 6E-07 45.0 3.5 24 3-26 16-39 (181)
393 1lw7_A Transcriptional regulat 94.9 0.016 5.4E-07 51.0 3.6 25 4-28 171-195 (365)
394 2yyz_A Sugar ABC transporter, 94.9 0.016 5.6E-07 50.7 3.6 24 3-26 29-52 (359)
395 2cxx_A Probable GTP-binding pr 94.9 0.014 4.8E-07 45.7 2.9 21 5-25 3-23 (190)
396 3bc1_A RAS-related protein RAB 94.9 0.016 5.4E-07 45.5 3.2 23 4-26 12-34 (195)
397 2it1_A 362AA long hypothetical 94.9 0.017 5.7E-07 50.7 3.6 24 3-26 29-52 (362)
398 1byi_A Dethiobiotin synthase; 94.9 0.031 1.1E-06 45.2 5.1 34 4-37 2-36 (224)
399 2hxs_A RAB-26, RAS-related pro 94.9 0.015 5.2E-07 44.9 3.0 22 4-25 7-28 (178)
400 3fkq_A NTRC-like two-domain pr 94.9 0.026 9.1E-07 49.8 4.9 37 2-38 142-179 (373)
401 2oil_A CATX-8, RAS-related pro 94.9 0.016 5.5E-07 45.6 3.2 23 4-26 26-48 (193)
402 1m8p_A Sulfate adenylyltransfe 94.9 0.02 6.8E-07 53.5 4.2 27 3-29 396-422 (573)
403 1g29_1 MALK, maltose transport 94.9 0.015 5.2E-07 51.2 3.3 23 4-26 30-52 (372)
404 1mh1_A RAC1; GTP-binding, GTPa 94.9 0.017 5.7E-07 45.0 3.2 23 4-26 6-28 (186)
405 3kkq_A RAS-related protein M-R 94.9 0.017 5.7E-07 45.0 3.2 23 4-26 19-41 (183)
406 3dz8_A RAS-related protein RAB 94.8 0.018 6.1E-07 45.3 3.4 22 5-26 25-46 (191)
407 1v43_A Sugar-binding transport 94.8 0.017 6E-07 50.8 3.6 24 3-26 37-60 (372)
408 3nh6_A ATP-binding cassette SU 94.8 0.012 4E-07 50.5 2.4 24 3-26 80-103 (306)
409 3bwd_D RAC-like GTP-binding pr 94.8 0.017 5.9E-07 44.8 3.2 23 4-26 9-31 (182)
410 3cr8_A Sulfate adenylyltranfer 94.8 0.024 8.3E-07 52.6 4.6 28 3-30 369-396 (552)
411 3cbq_A GTP-binding protein REM 94.8 0.012 4.2E-07 46.6 2.4 21 4-24 24-44 (195)
412 2ew1_A RAS-related protein RAB 94.8 0.017 5.8E-07 46.1 3.2 23 4-26 27-49 (201)
413 2fh5_B SR-beta, signal recogni 94.8 0.019 6.3E-07 46.1 3.5 24 3-26 7-30 (214)
414 4dsu_A GTPase KRAS, isoform 2B 94.8 0.017 5.9E-07 45.1 3.2 22 5-26 6-27 (189)
415 2efe_B Small GTP-binding prote 94.8 0.018 6E-07 44.7 3.2 23 4-26 13-35 (181)
416 2g6b_A RAS-related protein RAB 94.8 0.018 6.1E-07 44.6 3.2 23 4-26 11-33 (180)
417 2atv_A RERG, RAS-like estrogen 94.8 0.017 6E-07 45.6 3.2 23 4-26 29-51 (196)
418 2bov_A RAla, RAS-related prote 94.8 0.022 7.7E-07 45.2 3.9 24 3-26 14-37 (206)
419 1gwn_A RHO-related GTP-binding 94.8 0.017 6E-07 46.2 3.2 23 4-26 29-51 (205)
420 3k53_A Ferrous iron transport 94.8 0.02 6.9E-07 48.1 3.7 25 2-26 2-26 (271)
421 2bbs_A Cystic fibrosis transme 94.8 0.016 5.5E-07 49.2 3.1 25 3-27 64-88 (290)
422 3d31_A Sulfate/molybdate ABC t 94.7 0.015 5.2E-07 50.7 2.9 24 3-26 26-49 (348)
423 2g3y_A GTP-binding protein GEM 94.7 0.017 5.8E-07 46.6 3.0 21 5-25 39-59 (211)
424 1tf7_A KAIC; homohexamer, hexa 94.7 0.032 1.1E-06 51.7 5.3 35 4-38 282-316 (525)
425 1z06_A RAS-related protein RAB 94.7 0.022 7.7E-07 44.6 3.7 24 3-26 20-43 (189)
426 3clv_A RAB5 protein, putative; 94.7 0.018 6.3E-07 45.4 3.2 23 4-26 8-30 (208)
427 2fg5_A RAB-22B, RAS-related pr 94.7 0.019 6.4E-07 45.3 3.2 23 4-26 24-46 (192)
428 3t5g_A GTP-binding protein RHE 94.7 0.017 5.9E-07 44.8 3.0 23 3-25 6-28 (181)
429 2gza_A Type IV secretion syste 94.7 0.015 5.2E-07 51.1 2.9 34 4-38 176-209 (361)
430 3cwq_A Para family chromosome 94.7 0.048 1.6E-06 43.8 5.6 33 5-38 2-35 (209)
431 3igf_A ALL4481 protein; two-do 94.7 0.023 7.8E-07 50.1 4.0 36 3-38 2-37 (374)
432 1f6b_A SAR1; gtpases, N-termin 94.7 0.018 6.3E-07 45.7 3.1 22 4-25 26-47 (198)
433 2gf9_A RAS-related protein RAB 94.7 0.019 6.6E-07 45.0 3.2 23 4-26 23-45 (189)
434 2a9k_A RAS-related protein RAL 94.7 0.024 8.1E-07 44.1 3.7 23 4-26 19-41 (187)
435 2fz4_A DNA repair protein RAD2 94.7 0.52 1.8E-05 38.4 12.0 23 5-27 110-132 (237)
436 2a5j_A RAS-related protein RAB 94.7 0.02 6.8E-07 45.1 3.2 22 5-26 23-44 (191)
437 3gd7_A Fusion complex of cysti 94.7 0.018 6.3E-07 51.0 3.3 24 3-26 47-70 (390)
438 1vg8_A RAS-related protein RAB 94.6 0.02 6.7E-07 45.6 3.2 23 4-26 9-31 (207)
439 1zd9_A ADP-ribosylation factor 94.6 0.022 7.7E-07 44.6 3.5 23 4-26 23-45 (188)
440 3oes_A GTPase rhebl1; small GT 94.6 0.024 8.2E-07 45.0 3.7 24 3-26 24-47 (201)
441 3reg_A RHO-like small GTPase; 94.6 0.02 6.9E-07 45.1 3.2 23 4-26 24-46 (194)
442 3tw8_B RAS-related protein RAB 94.6 0.018 6.1E-07 44.6 2.9 22 4-25 10-31 (181)
443 3k1j_A LON protease, ATP-depen 94.6 0.021 7.3E-07 53.9 3.8 27 4-30 61-87 (604)
444 2orv_A Thymidine kinase; TP4A 94.6 0.068 2.3E-06 43.4 6.2 108 3-122 19-126 (234)
445 1oxx_K GLCV, glucose, ABC tran 94.6 0.015 5E-07 50.9 2.4 24 3-26 31-54 (353)
446 2p5s_A RAS and EF-hand domain 94.6 0.021 7.3E-07 45.2 3.2 24 3-26 28-51 (199)
447 3dzd_A Transcriptional regulat 94.6 0.28 9.6E-06 43.0 10.7 25 5-29 154-178 (368)
448 1ny5_A Transcriptional regulat 94.5 1.4 4.7E-05 38.9 15.2 22 6-27 163-184 (387)
449 3t1o_A Gliding protein MGLA; G 94.5 0.022 7.5E-07 44.8 3.2 23 5-27 16-38 (198)
450 3cio_A ETK, tyrosine-protein k 94.5 0.046 1.6E-06 46.6 5.4 37 2-38 103-140 (299)
451 3bfv_A CAPA1, CAPB2, membrane 94.5 0.047 1.6E-06 45.8 5.3 37 2-38 81-118 (271)
452 1zj6_A ADP-ribosylation factor 94.5 0.028 9.5E-07 44.0 3.7 23 3-25 16-38 (187)
453 3tkl_A RAS-related protein RAB 94.5 0.023 7.7E-07 44.7 3.2 23 4-26 17-39 (196)
454 1moz_A ARL1, ADP-ribosylation 94.5 0.018 6.2E-07 44.8 2.6 23 3-25 18-40 (183)
455 2gks_A Bifunctional SAT/APS ki 94.5 0.036 1.2E-06 51.5 5.0 27 3-29 372-398 (546)
456 1x3s_A RAS-related protein RAB 94.5 0.023 7.9E-07 44.6 3.2 23 4-26 16-38 (195)
457 3ice_A Transcription terminati 94.5 0.03 1E-06 49.2 4.1 30 4-33 175-204 (422)
458 2bcg_Y Protein YP2, GTP-bindin 94.5 0.023 7.8E-07 45.3 3.2 23 4-26 9-31 (206)
459 1zbd_A Rabphilin-3A; G protein 94.5 0.022 7.4E-07 45.3 3.0 23 4-26 9-31 (203)
460 4bas_A ADP-ribosylation factor 94.5 0.025 8.4E-07 44.6 3.4 23 3-25 17-39 (199)
461 1pui_A ENGB, probable GTP-bind 94.5 0.014 4.8E-07 46.6 1.9 23 3-25 26-48 (210)
462 3vr4_D V-type sodium ATPase su 94.5 0.019 6.4E-07 51.6 2.8 24 6-29 154-177 (465)
463 1wcv_1 SOJ, segregation protei 94.5 0.031 1.1E-06 46.4 4.1 37 2-38 5-42 (257)
464 2pt7_A CAG-ALFA; ATPase, prote 94.4 0.016 5.4E-07 50.3 2.3 104 4-122 172-275 (330)
465 2o52_A RAS-related protein RAB 94.4 0.023 7.8E-07 45.2 3.0 22 4-25 26-47 (200)
466 3lxx_A GTPase IMAP family memb 94.4 0.027 9.2E-07 46.2 3.5 23 3-25 29-51 (239)
467 2wjy_A Regulator of nonsense t 94.4 0.04 1.4E-06 53.6 5.2 36 3-38 371-406 (800)
468 2fv8_A H6, RHO-related GTP-bin 94.4 0.025 8.5E-07 45.2 3.2 22 4-25 26-47 (207)
469 2atx_A Small GTP binding prote 94.4 0.025 8.6E-07 44.5 3.2 23 4-26 19-41 (194)
470 2q3h_A RAS homolog gene family 94.4 0.024 8.1E-07 44.9 3.0 22 4-25 21-42 (201)
471 2qnr_A Septin-2, protein NEDD5 94.3 0.019 6.6E-07 49.0 2.6 20 6-25 21-40 (301)
472 1ksh_A ARF-like protein 2; sma 94.3 0.028 9.7E-07 43.8 3.4 24 3-26 18-41 (186)
473 2b6h_A ADP-ribosylation factor 94.3 0.03 1E-06 44.1 3.6 23 3-25 29-51 (192)
474 2j0v_A RAC-like GTP-binding pr 94.3 0.026 8.7E-07 45.2 3.2 23 4-26 10-32 (212)
475 3cph_A RAS-related protein SEC 94.3 0.026 8.8E-07 45.1 3.2 23 4-26 21-43 (213)
476 3k9g_A PF-32 protein; ssgcid, 94.3 0.05 1.7E-06 45.4 5.1 36 2-38 26-62 (267)
477 2h17_A ADP-ribosylation factor 94.3 0.021 7.3E-07 44.4 2.6 23 4-26 22-44 (181)
478 2gf0_A GTP-binding protein DI- 94.3 0.034 1.2E-06 43.8 3.9 22 4-25 9-30 (199)
479 2obl_A ESCN; ATPase, hydrolase 94.3 0.032 1.1E-06 48.6 4.0 26 4-29 72-97 (347)
480 2gco_A H9, RHO-related GTP-bin 94.3 0.026 9E-07 44.8 3.2 22 5-26 27-48 (201)
481 2j1l_A RHO-related GTP-binding 94.3 0.024 8.3E-07 45.6 3.0 22 4-25 35-56 (214)
482 2hup_A RAS-related protein RAB 94.3 0.026 9E-07 44.9 3.2 22 4-25 30-51 (201)
483 4gzl_A RAS-related C3 botulinu 94.3 0.027 9.1E-07 44.9 3.2 23 4-26 31-53 (204)
484 2qu8_A Putative nucleolar GTP- 94.3 0.025 8.5E-07 46.0 3.1 24 3-26 29-52 (228)
485 3q3j_B RHO-related GTP-binding 94.3 0.027 9.3E-07 45.3 3.2 22 5-26 29-50 (214)
486 4b3f_X DNA-binding protein smu 94.2 0.042 1.4E-06 52.3 5.0 27 4-30 206-232 (646)
487 3cmw_A Protein RECA, recombina 94.2 0.038 1.3E-06 57.7 4.8 36 3-38 383-418 (1706)
488 2oze_A ORF delta'; para, walke 94.2 0.044 1.5E-06 46.6 4.6 36 3-38 34-72 (298)
489 1ega_A Protein (GTP-binding pr 94.2 0.029 9.9E-07 47.9 3.4 24 3-26 8-31 (301)
490 2fu5_C RAS-related protein RAB 94.2 0.015 5E-07 45.3 1.5 23 4-26 9-31 (183)
491 2r9v_A ATP synthase subunit al 94.2 0.026 8.9E-07 51.3 3.2 23 4-26 176-199 (515)
492 1ypw_A Transitional endoplasmi 94.2 0.015 5E-07 56.8 1.7 26 4-29 512-537 (806)
493 3llu_A RAS-related GTP-binding 94.2 0.028 9.4E-07 44.5 3.0 22 4-25 21-42 (196)
494 1f2t_A RAD50 ABC-ATPase; DNA d 94.1 0.037 1.3E-06 41.8 3.6 25 3-27 23-47 (149)
495 2il1_A RAB12; G-protein, GDP, 94.1 0.027 9.2E-07 44.4 2.9 21 5-25 28-48 (192)
496 2npi_A Protein CLP1; CLP1-PCF1 94.1 0.026 8.8E-07 51.3 3.0 25 3-27 138-162 (460)
497 1tf7_A KAIC; homohexamer, hexa 94.1 0.04 1.4E-06 51.0 4.4 36 3-38 39-75 (525)
498 2yv5_A YJEQ protein; hydrolase 94.1 0.03 1E-06 47.9 3.3 21 4-24 166-186 (302)
499 3cmw_A Protein RECA, recombina 94.0 0.043 1.5E-06 57.3 4.8 36 3-38 732-767 (1706)
500 2rcn_A Probable GTPase ENGC; Y 94.0 0.03 1E-06 48.9 3.3 23 4-26 216-238 (358)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.2e-39 Score=303.63 Aligned_cols=278 Identities=17% Similarity=0.190 Sum_probs=204.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH----HHhcCCCceEEEeccchhhhc--CChHHHHHHHHHHHhcCCC---CCCCCCc
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFS----KISRRFEGSYFAHNVREAEET--GKLADLRKELLSTLLNDGN---MNKFPNI 72 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~---~~~~~~~ 72 (329)
++++|+|+|+||+||||||+++++ .+..+|+.++|++ ++.. ..+..++..++.++..... .+.....
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~ 226 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHV 226 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHHHHHHHhcCcccccccccccc
Confidence 468999999999999999999996 6788899999997 4333 3678899999999876532 1111111
Q ss_pred ----chHHHHhhhcCc-eEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHhcC-CCeEEEecCCChhhhHH
Q 020206 73 ----GLNFQSKRLTRK-KVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCG-VNKIYQIKELVHVDALK 146 (329)
Q Consensus 73 ----~~~~l~~~~~~~-~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~-~~~~~~l~~l~~~e~~~ 146 (329)
....+.+.+.++ ++||||||||+.+.+ .+.. .+|++||||||+..+..... ....+++++|+.+++++
T Consensus 227 ~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~ 300 (549)
T 2a5y_B 227 TSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYD 300 (549)
T ss_dssp CHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHH
Confidence 467788888886 999999999998765 3322 26999999999998877654 34679999999999999
Q ss_pred HHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHH-hhccCCh-----------hhHHHHH
Q 020206 147 LLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAIS-KLEMVPQ-----------MEIQEVL 214 (329)
Q Consensus 147 ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~-~l~~~~~-----------~~~~~~l 214 (329)
||.+.++.... .+...+.+.+|+++|+|+||||+.+|+.++... +.|...+. .+..... ..+...+
T Consensus 301 Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~l 378 (549)
T 2a5y_B 301 FLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMAL 378 (549)
T ss_dssp HHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHH
T ss_pred HHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHHHHhcccccccHHH
Confidence 99998755432 356778899999999999999999999997763 33322222 1211112 2344455
Q ss_pred HhhhcCCChhhHhHHHhhhcccCccChhHHHHHHHhC--Cc-----------chhhhHHHHhhccceeeecC---Cceec
Q 020206 215 KISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNAC--EF-----------FATSGIEVLVDKSLITISEY---NKIRM 278 (329)
Q Consensus 215 ~~~~~~L~~~~~~~l~~ls~~~~~~~~~~l~~~~~~~--~~-----------~~~~~l~~L~~~~Ll~~~~~---~~~~~ 278 (329)
+.+|..|++++|++|.++|+||.+++.+ ..+|.+. ++ +...++++|++++|++.... ++|+|
T Consensus 379 k~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~m 456 (549)
T 2a5y_B 379 QRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKI 456 (549)
T ss_dssp HHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEEC
T ss_pred HHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEe
Confidence 5555566666666666999999887766 4566665 22 22347999999999986543 46999
Q ss_pred cHHHHHHHHHHHHhc
Q 020206 279 HDLMRNMGREIVRQE 293 (329)
Q Consensus 279 H~lir~~~~~~~~~~ 293 (329)
|+++|+||++++.++
T Consensus 457 Hdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 457 DHIIHMFLKHVVDAQ 471 (549)
T ss_dssp CHHHHHHHHTTSCTH
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999999766544
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-35 Score=303.25 Aligned_cols=279 Identities=19% Similarity=0.286 Sum_probs=214.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH---HhcCCCceE-EEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCC----cc
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSK---ISRRFEGSY-FAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPN----IG 73 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~ 73 (329)
++++|+|+|+||+||||||++++++ ...+|+..+ |+. ..... .......+..++..+........... ..
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 223 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQD-KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEA 223 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCC-HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcC-chHHHHHHHHHHHHhhhhcccccCCCCCHHHH
Confidence 5789999999999999999999875 355576666 555 22211 12233445566666655433212211 15
Q ss_pred hHHHHhhhcCc--eEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHh-cCCCeEEEecC-CChhhhHHHHh
Q 020206 74 LNFQSKRLTRK--KVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALIN-CGVNKIYQIKE-LVHVDALKLLN 149 (329)
Q Consensus 74 ~~~l~~~~~~~--~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~-~~~~~~~~l~~-l~~~e~~~ll~ 149 (329)
...+...+.++ ++||||||+|+...+..+ .++++||+|||++.+... ......+.+++ |+++|+.+||.
T Consensus 224 ~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~ 296 (1249)
T 3sfz_A 224 KDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILS 296 (1249)
T ss_dssp HHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHH
Confidence 55666666666 999999999998766654 578999999999977643 34556788986 99999999999
Q ss_pred hhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCC-----------hhhHHHHHHhhh
Q 020206 150 QCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVP-----------QMEIQEVLKISY 218 (329)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~-----------~~~~~~~l~~~~ 218 (329)
..+.... +..++.+.+|+++|+|+||||+++|+.|+..+ ..|..+++.+.... ...+..++..+|
T Consensus 297 ~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~ 372 (1249)
T 3sfz_A 297 LFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISV 372 (1249)
T ss_dssp HHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHH
T ss_pred HhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHH
Confidence 8773322 22335589999999999999999999998865 46888877764322 246899999999
Q ss_pred cCCChhhHhHHHhhhcccCc--cChhHHHHHHHhCCcchhhhHHHHhhccceeeecCCc---eeccHHHHHHHHHHHHhc
Q 020206 219 DGLDDKEKNIFLDIACFLVG--EDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNK---IRMHDLMRNMGREIVRQE 293 (329)
Q Consensus 219 ~~L~~~~~~~l~~ls~~~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~---~~~H~lir~~~~~~~~~~ 293 (329)
+.|++++|+||.++|+||.+ ++.+.+..+|..++..+...|++|++++|++...++. |+||+++|+|+++++.++
T Consensus 373 ~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 373 EMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999999999999976 6888999999888888889999999999999877665 999999999999986654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.3e-34 Score=278.86 Aligned_cols=256 Identities=15% Similarity=0.133 Sum_probs=191.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH--HHhcCCCc-eEEEeccchhhhcCChHHHHHHHHHHHhcCCC--CCCCC------
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFS--KISRRFEG-SYFAHNVREAEETGKLADLRKELLSTLLNDGN--MNKFP------ 70 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~------ 70 (329)
++++|+|+||||+||||||+++++ +++.+|+. ++|++ ++.......+...++..+..... .....
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip 224 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHHHHHHhhcCcccccccccccCCC
Confidence 368999999999999999999997 46788987 67777 44445566777766665432210 00100
Q ss_pred ---CcchHHHHhhh---cCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHhcCCCeEEEec------C
Q 020206 71 ---NIGLNFQSKRL---TRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIK------E 138 (329)
Q Consensus 71 ---~~~~~~l~~~~---~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~------~ 138 (329)
+...+.+.+.+ .++++||||||+|+.+.++.+ .++++||||||+..+.........+.++ +
T Consensus 225 ~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~ 297 (1221)
T 1vt4_I 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297 (1221)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSC
T ss_pred CCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHhcCCCeEEEecCccccCC
Confidence 01234455443 679999999999998888775 2689999999999876433222235555 8
Q ss_pred CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCC--CHHHHHHHHHhhccCChhhHHHHHHh
Q 020206 139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK--RKEVWENAISKLEMVPQMEIQEVLKI 216 (329)
Q Consensus 139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~l~~ 216 (329)
|+.+|+++||.+.. +... . +... +.|+|+||||+++|+.|+.. ....|... ....+..+++.
T Consensus 298 LS~eEA~eLF~~~~-g~~~-e----eL~~---eICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLel 361 (1221)
T 1vt4_I 298 LTPDEVKSLLLKYL-DCRP-Q----DLPR---EVLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIES 361 (1221)
T ss_dssp CCHHHHHHHHHHHH-CCCT-T----THHH---HHCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHc-CCCH-H----HHHH---HHhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHH
Confidence 99999999999885 3221 1 1233 34999999999999999886 56667542 35679999999
Q ss_pred hhcCCChhh-HhHHHhhhcccCc--cChhHHHHHHHhCC-cchhhhHHHHhhccceeee-cCCceeccHHHHH
Q 020206 217 SYDGLDDKE-KNIFLDIACFLVG--EDRDIVTKYLNACE-FFATSGIEVLVDKSLITIS-EYNKIRMHDLMRN 284 (329)
Q Consensus 217 ~~~~L~~~~-~~~l~~ls~~~~~--~~~~~l~~~~~~~~-~~~~~~l~~L~~~~Ll~~~-~~~~~~~H~lir~ 284 (329)
||+.|+++. |+||+++|+||.+ ++.+.+..+|.+++ .++...|++|.++||++.. +.++|+||+|+++
T Consensus 362 SYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllE 434 (1221)
T 1vt4_I 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434 (1221)
T ss_dssp HHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHH
Confidence 999999999 9999999999976 56777889998763 3577899999999999975 3568999999988
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=271.25 Aligned_cols=271 Identities=20% Similarity=0.261 Sum_probs=199.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH---hcCCC-ceEEEeccchhhhcCChHHHHHH---HHHHHhcCCCCC--CCC--
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI---SRRFE-GSYFAHNVREAEETGKLADLRKE---LLSTLLNDGNMN--KFP-- 70 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~--~~~-- 70 (329)
+.++|+|+|+||+||||||.+++++. ...|+ .++|+.. ... ....+... ++..+....... ...
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~-~~~----~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 220 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV-GKQ----DKSGLLMKLQNLCTRLDQDESFSQRLPLNI 220 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE-ESC----CHHHHHHHHHHHHHHHCSSCCSCSSCCCSH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEEC-CCC----chHHHHHHHHHHHHHhccccccccCCCCCH
Confidence 47899999999999999999998753 66785 5667662 221 22233333 333333211110 111
Q ss_pred CcchHHHHhhhcC--ceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHhcCCCeEEEe---cCCChhhhH
Q 020206 71 NIGLNFQSKRLTR--KKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQI---KELVHVDAL 145 (329)
Q Consensus 71 ~~~~~~l~~~~~~--~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~~~~~~l---~~l~~~e~~ 145 (329)
......+...+.+ +++||||||+|+...++.+ +++++||+|||+..+..... ...+.+ ++|+.+|+.
T Consensus 221 ~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~ 292 (591)
T 1z6t_A 221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGL 292 (591)
T ss_dssp HHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHH
T ss_pred HHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHH
Confidence 1144455555544 6899999999987765543 56899999999987665433 334555 589999999
Q ss_pred HHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccC-----------ChhhHHHHH
Q 020206 146 KLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMV-----------PQMEIQEVL 214 (329)
Q Consensus 146 ~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~-----------~~~~~~~~l 214 (329)
++|....+... ...++.+..|++.|+|+|+||+++|+.++..+ ..|..+++.+... ....+..++
T Consensus 293 ~L~~~~~~~~~---~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 368 (591)
T 1z6t_A 293 EILSLFVNMKK---ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAM 368 (591)
T ss_dssp HHHHHHHTSCG---GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHH
T ss_pred HHHHHHhCCCc---ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHH
Confidence 99998874321 12234588999999999999999999998764 3677777766432 135789999
Q ss_pred HhhhcCCChhhHhHHHhhhcccCc--cChhHHHHHHHhCCcchhhhHHHHhhccceeeecCC---ceeccHHHHHHHHHH
Q 020206 215 KISYDGLDDKEKNIFLDIACFLVG--EDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYN---KIRMHDLMRNMGREI 289 (329)
Q Consensus 215 ~~~~~~L~~~~~~~l~~ls~~~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~---~~~~H~lir~~~~~~ 289 (329)
..+|+.|+++.|.+|..+|+||.+ ++.+.+..+|..+.......|+.|.++||++...++ +|+||+++|+|++++
T Consensus 369 ~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 999999999999999999999875 777888899987666778899999999999865433 699999999999988
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.82 E-value=9e-19 Score=155.40 Aligned_cols=266 Identities=16% Similarity=0.106 Sum_probs=158.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhh---hcCChHHHHHHHHHHHhc----------------CC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAE---ETGKLADLRKELLSTLLN----------------DG 64 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~----------------~~ 64 (329)
+++.|+|++|+|||+|++++++.. + .+|+.. .... ...+...++..+...+.. ..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 105 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER----P-GILIDC-RELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLT 105 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEEH-HHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGT
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEEe-ecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEeccee
Confidence 689999999999999999998874 1 555542 1111 112455555555543321 00
Q ss_pred CCCCCCCc--chHHHHhhhcC-ceEEEEEecCCChh--------hHHHHhcccCCCCCCcEEEEEeCchhHHHh------
Q 020206 65 NMNKFPNI--GLNFQSKRLTR-KKVLIVFDDVNHPR--------QIEFLIGNLDWFASGSRILITARDKQALIN------ 127 (329)
Q Consensus 65 ~~~~~~~~--~~~~l~~~~~~-~~~LlvlDdv~~~~--------~~~~l~~~l~~~~~~~~ilitsr~~~~~~~------ 127 (329)
........ ....+.+.... ++++||+||++... .+..++..+....++..+|+|++.......
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~ 185 (350)
T 2qen_A 106 LEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITD 185 (350)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTC
T ss_pred eccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcC
Confidence 00000111 22333333322 38999999996532 222333322211257789999887543211
Q ss_pred ----c--CCCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcC-CCHHHHHHHHH
Q 020206 128 ----C--GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR-KRKEVWENAIS 200 (329)
Q Consensus 128 ----~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~~~~~~~~~~~ 200 (329)
. .....+.+.+|+.+|+.+++.......... ..++.+..+++.|+|+|+++..++..+.. .....+ ..
T Consensus 186 ~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~ 260 (350)
T 2qen_A 186 YESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRA---MK 260 (350)
T ss_dssp TTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH---HH
T ss_pred CCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHH---HH
Confidence 0 123579999999999999998754221111 22456889999999999999998875432 222211 11
Q ss_pred hhccCChhhHHHHHHhhhcCC---ChhhHhHHHhhhcccCccChhHHHHHHH-----hCCcchhhhHHHHhhccceeeec
Q 020206 201 KLEMVPQMEIQEVLKISYDGL---DDKEKNIFLDIACFLVGEDRDIVTKYLN-----ACEFFATSGIEVLVDKSLITISE 272 (329)
Q Consensus 201 ~l~~~~~~~~~~~l~~~~~~L---~~~~~~~l~~ls~~~~~~~~~~l~~~~~-----~~~~~~~~~l~~L~~~~Ll~~~~ 272 (329)
.+ .+.+...+...+.++ ++..+.++..+|+ +..+...+...+. .+.......++.|.+.+||...
T Consensus 261 ~~----~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~- 333 (350)
T 2qen_A 261 RT----LEVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE- 333 (350)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-
T ss_pred HH----HHHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-
Confidence 11 111222233333444 7889999999988 3466677766652 2222345679999999999876
Q ss_pred CCcee-ccHHHHHHHH
Q 020206 273 YNKIR-MHDLMRNMGR 287 (329)
Q Consensus 273 ~~~~~-~H~lir~~~~ 287 (329)
++.|+ .||++++|.+
T Consensus 334 ~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 334 DNTYKIADPVVATVLR 349 (350)
T ss_dssp TTEEEESSHHHHHHHT
T ss_pred CCEEEEecHHHHHHHc
Confidence 46676 4999999875
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.81 E-value=2.3e-18 Score=153.11 Aligned_cols=266 Identities=13% Similarity=0.043 Sum_probs=153.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhh--hcCChHHHHHHHHHHHhc-------------CCC---
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAE--ETGKLADLRKELLSTLLN-------------DGN--- 65 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~-------------~~~--- 65 (329)
+++.|+|++|+|||+|++++++.... ..+|+.. .... ...+...++..+...+.. ...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 106 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL---PYIYLDL-RKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIV 106 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEG-GGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEc-hhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEE
Confidence 58999999999999999999988653 2456552 2110 012233444443333210 000
Q ss_pred CCC----------CCCc---chHHHHhhhcCceEEEEEecCCCh-----hhHHHHhcccCCCCCCcEEEEEeCchhHHHh
Q 020206 66 MNK----------FPNI---GLNFQSKRLTRKKVLIVFDDVNHP-----RQIEFLIGNLDWFASGSRILITARDKQALIN 127 (329)
Q Consensus 66 ~~~----------~~~~---~~~~l~~~~~~~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~ 127 (329)
.+. .... ....+.+... ++++|||||++.. ..+..++..+....++..+|+|++.......
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~ 185 (357)
T 2fna_A 107 IMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYD 185 (357)
T ss_dssp ECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHH
T ss_pred ecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHH
Confidence 000 0011 2222222222 4899999999542 2222233322211246789999997643221
Q ss_pred ----------c--CCCeEEEecCCChhhhHHHHhhhhcC-CCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcC-CCHH
Q 020206 128 ----------C--GVNKIYQIKELVHVDALKLLNQCAFG-RDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR-KRKE 193 (329)
Q Consensus 128 ----------~--~~~~~~~l~~l~~~e~~~ll~~~~~~-~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~~~~ 193 (329)
. .....+.+.+|+.+|+.+++...... ...... ...++..|+|+|+++..++..+.. ....
T Consensus 186 ~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~ 260 (357)
T 2fna_A 186 YLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-----YEVVYEKIGGIPGWLTYFGFIYLDNKNLD 260 (357)
T ss_dssp HTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-----HHHHHHHHCSCHHHHHHHHHHHHHHCCHH
T ss_pred HHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-----HHHHHHHhCCCHHHHHHHHHHHccccchH
Confidence 1 12368999999999999999875421 112221 378999999999999999877543 2222
Q ss_pred HHHHHHHhhccCChhhHHHHHHhhh---cCCChhhHhHHHhhhcccCccChhHHHHHH----H--hCCcchhhhHHHHhh
Q 020206 194 VWENAISKLEMVPQMEIQEVLKISY---DGLDDKEKNIFLDIACFLVGEDRDIVTKYL----N--ACEFFATSGIEVLVD 264 (329)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~~l~~~~---~~L~~~~~~~l~~ls~~~~~~~~~~l~~~~----~--~~~~~~~~~l~~L~~ 264 (329)
.|. ..+.......+..-+...+ .++++..+.++..+|+ . . +...+...+ + .+.......|+.|.+
T Consensus 261 ~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~ 334 (357)
T 2fna_A 261 FAI---NQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSDVKRALELEEGIEISDSEIYNYLTQLTK 334 (357)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 221 1110000011111122111 1688899999999998 3 3 666666443 2 122334578999999
Q ss_pred ccceeeecCCcee-ccHHHHHHH
Q 020206 265 KSLITISEYNKIR-MHDLMRNMG 286 (329)
Q Consensus 265 ~~Ll~~~~~~~~~-~H~lir~~~ 286 (329)
.+||...+ +.|+ .||+++++.
T Consensus 335 ~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 335 HSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp TTSEEESS-SCEEESSHHHHHHT
T ss_pred CCCEEecC-CEEEecCHHHHHhh
Confidence 99998764 6676 599999875
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.73 E-value=2.3e-16 Score=143.12 Aligned_cols=270 Identities=13% Similarity=0.056 Sum_probs=153.8
Q ss_pred ceEEEE--EcCCCCcHHHHHHHHHHHHhcC-----CC-ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCC-Ccc
Q 020206 3 TCKLGI--WGIGGVGKTAIAGAFFSKISRR-----FE-GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFP-NIG 73 (329)
Q Consensus 3 ~r~v~I--~G~~GiGKTtLa~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~ 73 (329)
.+.+.| +|++|+|||+|++.+++..... +. .++|+. +........++..++..++......... ...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 125 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AFNAPNLYTILSLIVRQTGYPIQVRGAPALDI 125 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 457888 9999999999999999876542 12 234444 3344567788888888875432211111 112
Q ss_pred hHHHHhhhc--CceEEEEEecCCCh--------hhHHHHhcccCCC---C--CCcEEEEEeCchhHH-------Hh--cC
Q 020206 74 LNFQSKRLT--RKKVLIVFDDVNHP--------RQIEFLIGNLDWF---A--SGSRILITARDKQAL-------IN--CG 129 (329)
Q Consensus 74 ~~~l~~~~~--~~~~LlvlDdv~~~--------~~~~~l~~~l~~~---~--~~~~ilitsr~~~~~-------~~--~~ 129 (329)
...+.+.+. +++++|||||++.. +.+..++..+... . .+..+|+||+..... .. ..
T Consensus 126 ~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~ 205 (412)
T 1w5s_A 126 LKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQ 205 (412)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTT
T ss_pred HHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhh
Confidence 333444433 67999999999542 3343333333211 1 344577787654321 11 12
Q ss_pred CCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhc------CCchHHHHHHhhhcC---------CCHHH
Q 020206 130 VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ------GVPIALKILGRFLFR---------KRKEV 194 (329)
Q Consensus 130 ~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~------g~Plal~~~~~~l~~---------~~~~~ 194 (329)
....+.+++++.+++.+++..+...........++.+..+++.++ |+|..+..++..... -....
T Consensus 206 ~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~ 285 (412)
T 1w5s_A 206 IGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDL 285 (412)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred cCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 233499999999999999976542111111233567889999999 999876665543211 11222
Q ss_pred HHHHHHhhccCChhhHHHHHHhhhcCCChhhHhHHHhhhccc----CccChhHHHH----HH-HhCC------cchhhhH
Q 020206 195 WENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFL----VGEDRDIVTK----YL-NACE------FFATSGI 259 (329)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~----~~~~~~~l~~----~~-~~~~------~~~~~~l 259 (329)
+......... ...+...+..||+..+.++..++.+. ..++...+.. +. ...+ ......+
T Consensus 286 v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 359 (412)
T 1w5s_A 286 VRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYL 359 (412)
T ss_dssp HHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Confidence 2222221110 23455677899999999999888653 2344433222 22 2111 1234679
Q ss_pred HHHhhccceeeec-----CCceeccHHH
Q 020206 260 EVLVDKSLITISE-----YNKIRMHDLM 282 (329)
Q Consensus 260 ~~L~~~~Ll~~~~-----~~~~~~H~li 282 (329)
+.|.+.+||+... .|+|++|.+.
T Consensus 360 ~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 360 KHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 9999999998542 3456555443
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.64 E-value=3.8e-14 Score=127.25 Aligned_cols=254 Identities=15% Similarity=0.018 Sum_probs=150.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC--------CCceEEEeccchhhhcC-ChHHHHHHHHHHHhcCCCCCCCC--C
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR--------FEGSYFAHNVREAEETG-KLADLRKELLSTLLNDGNMNKFP--N 71 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~--~ 71 (329)
.+.+.|+|++|+|||+||+.+++..... ....+|+. ..... ....++..++..+.......... .
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 120 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGGTPQAVLSSLAGKLTGFSVPKHGINLG 120 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHH
Confidence 5689999999999999999999876433 22344444 33334 67778888887774432221111 1
Q ss_pred cchHHHHhhhcCceEEEEEecCCChh------h-HHHHhcccCCCCCCcEEEEEeCchhHH----Hh--cCCCeEEEecC
Q 020206 72 IGLNFQSKRLTRKKVLIVFDDVNHPR------Q-IEFLIGNLDWFASGSRILITARDKQAL----IN--CGVNKIYQIKE 138 (329)
Q Consensus 72 ~~~~~l~~~~~~~~~LlvlDdv~~~~------~-~~~l~~~l~~~~~~~~ilitsr~~~~~----~~--~~~~~~~~l~~ 138 (329)
.....+.+.+...+.+|||||++... . +..+... ..+..+|+||+..... .. ......+.+++
T Consensus 121 ~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~----~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~ 196 (384)
T 2qby_B 121 EYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS----DANISVIMISNDINVRDYMEPRVLSSLGPSVIFKP 196 (384)
T ss_dssp HHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS----SSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECC
T ss_pred HHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC----CcceEEEEEECCCchHhhhCHHHHhcCCCeEEECC
Confidence 23455555666665699999995432 2 3333322 2577888888865211 11 12223899999
Q ss_pred CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhc---CCchHHHHHHhhh---c----CCCHHHHHHHHHhhccCChh
Q 020206 139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ---GVPIALKILGRFL---F----RKRKEVWENAISKLEMVPQM 208 (329)
Q Consensus 139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~~~l---~----~~~~~~~~~~~~~l~~~~~~ 208 (329)
++.++..+++...+..........++.++.+++.++ |+|..+..+.... . .-....+...+...
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~------ 270 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY------ 270 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH------
Confidence 999999999998753111111223356788888888 9998443322221 1 12344444444433
Q ss_pred hHHHHHHhhhcCCChhhHhHHHhhhc-ccCccChhHHHHHHHhC---C---cchhhhHHHHhhccceeee
Q 020206 209 EIQEVLKISYDGLDDKEKNIFLDIAC-FLVGEDRDIVTKYLNAC---E---FFATSGIEVLVDKSLITIS 271 (329)
Q Consensus 209 ~~~~~l~~~~~~L~~~~~~~l~~ls~-~~~~~~~~~l~~~~~~~---~---~~~~~~l~~L~~~~Ll~~~ 271 (329)
....+..++..|++..+.++..++. ..++-.......+...- . ......+..|.+.|+++..
T Consensus 271 -~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 271 -EQERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp -HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred -hcchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 1235667788999999999888876 21010011222333221 1 1234578899999999854
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=1.3e-13 Score=123.94 Aligned_cols=278 Identities=12% Similarity=0.028 Sum_probs=162.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC-CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCC-CcchHHHHhhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF-EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFP-NIGLNFQSKRL 81 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~l~~~~ 81 (329)
+.+.|+|++|+|||+|++.+++...... ...+++. .........++..++..+.......... ......+...+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 120 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL 120 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH
Confidence 4899999999999999999999876542 3344444 3334456677778777765432211111 11223333332
Q ss_pred --cCceEEEEEecCCC--hhhHHHHhcccCCCC----CCcEEEEEeCchhHHHhcC-------CCeEEEecCCChhhhHH
Q 020206 82 --TRKKVLIVFDDVNH--PRQIEFLIGNLDWFA----SGSRILITARDKQALINCG-------VNKIYQIKELVHVDALK 146 (329)
Q Consensus 82 --~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~----~~~~ilitsr~~~~~~~~~-------~~~~~~l~~l~~~e~~~ 146 (329)
.+++.+|+||+++. ......+...+.... .+..+|++|+......... ....+.+++++.++..+
T Consensus 121 ~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~ 200 (389)
T 1fnn_A 121 RERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFD 200 (389)
T ss_dssp HHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHH
T ss_pred hhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHH
Confidence 25688999999954 344555554443222 3667787777653222111 12369999999999999
Q ss_pred HHhhhhcCCCCCCCchHHHHHHHHHHh---------cCCchHHHHHHhhhcC---------CCHHHHHHHHHhhccCChh
Q 020206 147 LLNQCAFGRDHPDASYIELTHEAIKYA---------QGVPIALKILGRFLFR---------KRKEVWENAISKLEMVPQM 208 (329)
Q Consensus 147 ll~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~l~~---------~~~~~~~~~~~~l~~~~~~ 208 (329)
++..............++.+..+++.+ .|+|..+..+...... -....+.........
T Consensus 201 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---- 276 (389)
T 1fnn_A 201 ILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF---- 276 (389)
T ss_dssp HHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC----
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh----
Confidence 998876321111234457789999999 7998766655443211 122233332222211
Q ss_pred hHHHHHHhhhcCCChhhHhHHHhhhccc---C--ccChhHHHHHHHh-------CC---cchhhhHHHHhhccceeeecC
Q 020206 209 EIQEVLKISYDGLDDKEKNIFLDIACFL---V--GEDRDIVTKYLNA-------CE---FFATSGIEVLVDKSLITISEY 273 (329)
Q Consensus 209 ~~~~~l~~~~~~L~~~~~~~l~~ls~~~---~--~~~~~~l~~~~~~-------~~---~~~~~~l~~L~~~~Ll~~~~~ 273 (329)
..+...+.+|++..+.++..++.+. . .++...+...+.. .. ......+..|...|+|.....
T Consensus 277 ---~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 277 ---GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp ---CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred ---hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeee
Confidence 1223446788999898888787543 1 3454444333222 11 123457899999999986443
Q ss_pred -------Cce-------eccHHHHHHHHHHHHh
Q 020206 274 -------NKI-------RMHDLMRNMGREIVRQ 292 (329)
Q Consensus 274 -------~~~-------~~H~lir~~~~~~~~~ 292 (329)
|+| ..|++.+.+...++..
T Consensus 354 ~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 354 KRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp ---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 332 2456666655555443
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=6.1e-14 Score=125.79 Aligned_cols=258 Identities=15% Similarity=0.057 Sum_probs=147.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCC---CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCC-CcchHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF---EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFP-NIGLNFQS 78 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~l~ 78 (329)
.+.+.|+|++|+|||+|++.+++.....+ ...+|+. .........++..++..+.......... ......+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 120 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLV 120 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 56899999999999999999999876543 2344544 3333455666666666553322110110 11233333
Q ss_pred hhhc--CceEEEEEecCCC------hhhHHHHhcccCC-CCCCcEEEEEeCchhHHHhc------C-CCeEEEecCCChh
Q 020206 79 KRLT--RKKVLIVFDDVNH------PRQIEFLIGNLDW-FASGSRILITARDKQALINC------G-VNKIYQIKELVHV 142 (329)
Q Consensus 79 ~~~~--~~~~LlvlDdv~~------~~~~~~l~~~l~~-~~~~~~ilitsr~~~~~~~~------~-~~~~~~l~~l~~~ 142 (329)
+.+. +++.+||||+++. ...+..++..+.. ...+..+|++|+........ . ....+.+++++.+
T Consensus 121 ~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~ 200 (386)
T 2qby_A 121 KAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAE 200 (386)
T ss_dssp HHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHH
T ss_pred HHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHH
Confidence 3333 3489999999943 3334444433321 13355677777765322111 1 2258999999999
Q ss_pred hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhc---CCchHHHHHHhhhcC---------CCHHHHHHHHHhhccCChhhH
Q 020206 143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQ---GVPIALKILGRFLFR---------KRKEVWENAISKLEMVPQMEI 210 (329)
Q Consensus 143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~~~l~~---------~~~~~~~~~~~~l~~~~~~~~ 210 (329)
+..+++..............++..+.+++.++ |+|..+..+...... -....+....... .
T Consensus 201 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~-------~ 273 (386)
T 2qby_A 201 ELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI-------E 273 (386)
T ss_dssp HHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH-------h
Confidence 99999987652111112234566788888888 999955444332211 1233333333222 2
Q ss_pred HHHHHhhhcCCChhhHhHHHhhhccc----CccChh-------HHHHHHHhCC---cchhhhHHHHhhccceeee
Q 020206 211 QEVLKISYDGLDDKEKNIFLDIACFL----VGEDRD-------IVTKYLNACE---FFATSGIEVLVDKSLITIS 271 (329)
Q Consensus 211 ~~~l~~~~~~L~~~~~~~l~~ls~~~----~~~~~~-------~l~~~~~~~~---~~~~~~l~~L~~~~Ll~~~ 271 (329)
...+...+.++++..+.++..++.+. ..++.. .++..++... ......++.|.+.|+|+..
T Consensus 274 ~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 274 RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 24566778899999898888777431 113332 2222222222 2245679999999999864
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.51 E-value=1.1e-12 Score=117.61 Aligned_cols=258 Identities=13% Similarity=0.038 Sum_probs=146.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC------CCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCC-CCcchH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKF-PNIGLN 75 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 75 (329)
.+.+.|+|++|+|||+|++.+++..... ....+++. .........++..++..+......... ......
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 119 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYE 119 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 4679999999999999999999876442 12234444 334456677788888877543221111 111233
Q ss_pred HHHhhh--cCceEEEEEecCCChh-------hHHHHhcccCCC--CCCcEEEEEeCchhHHHh-----c-CC-CeEEEec
Q 020206 76 FQSKRL--TRKKVLIVFDDVNHPR-------QIEFLIGNLDWF--ASGSRILITARDKQALIN-----C-GV-NKIYQIK 137 (329)
Q Consensus 76 ~l~~~~--~~~~~LlvlDdv~~~~-------~~~~l~~~l~~~--~~~~~ilitsr~~~~~~~-----~-~~-~~~~~l~ 137 (329)
.+.+.+ .+++++|+||+++... .+..++...... ..+..+|++|+....... . .. ...+.++
T Consensus 120 ~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~ 199 (387)
T 2v1u_A 120 RLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFP 199 (387)
T ss_dssp HHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBC
T ss_pred HHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeC
Confidence 444443 3468999999996432 233333322211 345567777765421100 1 11 2578999
Q ss_pred CCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhc---CCchHHHHHHhhhcC---------CCHHHHHHHHHhhccC
Q 020206 138 ELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ---GVPIALKILGRFLFR---------KRKEVWENAISKLEMV 205 (329)
Q Consensus 138 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~~~l~~---------~~~~~~~~~~~~l~~~ 205 (329)
+++.++..+++...+..........++.++.+++.++ |+|..+..+...... -....+.......
T Consensus 200 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~--- 276 (387)
T 2v1u_A 200 PYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI--- 276 (387)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH---
Confidence 9999999999988753111111122345788888998 999544443322211 1234444433332
Q ss_pred ChhhHHHHHHhhhcCCChhhHhHHHhhhc-ccC--ccChhHHHH----HHHhC---C---cchhhhHHHHhhccceeee
Q 020206 206 PQMEIQEVLKISYDGLDDKEKNIFLDIAC-FLV--GEDRDIVTK----YLNAC---E---FFATSGIEVLVDKSLITIS 271 (329)
Q Consensus 206 ~~~~~~~~l~~~~~~L~~~~~~~l~~ls~-~~~--~~~~~~l~~----~~~~~---~---~~~~~~l~~L~~~~Ll~~~ 271 (329)
....+..++..+++..+.++..++. +.+ .++...+.. ++... . ......++.|...|+++..
T Consensus 277 ----~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 277 ----ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp ----HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ----hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 2235666789999999988887773 321 233332222 22111 1 1234578999999999863
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.36 E-value=2.1e-11 Score=101.80 Aligned_cols=173 Identities=14% Similarity=0.045 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHH----hcCCCCCCCCCcchHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTL----LNDGNMNKFPNIGLNFQSK 79 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~l~~ 79 (329)
+.+.|+|++|+|||+|++.+++.....+......+ ...... ..+.... ................+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--------GVCDNC-REIEQGRFVDLIEIDAASRTKVEDTRDLLD 116 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--------SCSHHH-HHHHTTCCSSEEEEETTCGGGHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------cccHHH-HHHhccCCcceEEecCcccccHHHHHHHHH
Confidence 57899999999999999999987754332110000 000000 0000000 0000000000000111111
Q ss_pred h-----hcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhHHH--hcCCCeEEEecCCChhhhHHHHhh
Q 020206 80 R-----LTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQALI--NCGVNKIYQIKELVHVDALKLLNQ 150 (329)
Q Consensus 80 ~-----~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~--~~~~~~~~~l~~l~~~e~~~ll~~ 150 (329)
. ..+++.+||+||++. ......++..+.....+..+|+||+...... .......+.+++++.++..+++..
T Consensus 117 ~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~ 196 (250)
T 1njg_A 117 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 196 (250)
T ss_dssp SCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred HhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHH
Confidence 1 134678999999953 4556666665554456778888887653211 123346899999999999999988
Q ss_pred hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
....... ...++.++.|++.++|+|..+..++..+
T Consensus 197 ~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 197 ILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7632221 2335668899999999999988876554
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.28 E-value=1.3e-10 Score=95.75 Aligned_cols=164 Identities=13% Similarity=0.051 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC-CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF-EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
+.+.|+|++|+|||++++.+++.+.... ...+.... .........+. .....+..... ...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~--------------~~~ 100 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN---ASDERGIDVVR-HKIKEFARTAP--------------IGG 100 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE---TTCTTCHHHHH-HHHHHHHTSCC--------------STT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec---cccccChHHHH-HHHHHHhcccC--------------CCc
Confidence 3489999999999999999998764332 22222211 11111222222 12222111100 112
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhHH-H-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQAL-I-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~~-~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
.++.+|++||++. ......+...+.....+..+|+||+..... . .......+.+++++.++..+++...+.....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~- 179 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV- 179 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 5678999999954 334444444443335577888888765311 1 1133458899999999999999887632111
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
...++....+++.++|+|..+..+...+
T Consensus 180 -~~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 180 -KITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp -CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1334668889999999999765554433
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=1.5e-09 Score=94.67 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC-CCc-eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR-FEG-SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
+.+.|+|++|+|||++|+.+++.+... +.. .+++. ....... +.++.+...+..... ..
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~-~~i~~~~~~~~~~~~--------------~~ 103 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGI-DVVRNQIKHFAQKKL--------------HL 103 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSH-HHHHTHHHHHHHBCC--------------CC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccCh-HHHHHHHHHHHhccc--------------cC
Confidence 348999999999999999999986432 221 22222 1111122 222222222221100 01
Q ss_pred -cCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhHH-H-hcCCCeEEEecCCChhhhHHHHhhhhcCCC
Q 020206 82 -TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQAL-I-NCGVNKIYQIKELVHVDALKLLNQCAFGRD 156 (329)
Q Consensus 82 -~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~~-~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~ 156 (329)
.+++.+||+||++. ......+...+.....+..+|++|+..... . .......+.+++++.++..+++...+....
T Consensus 104 ~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~ 183 (323)
T 1sxj_B 104 PPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLED 183 (323)
T ss_dssp CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcC
Confidence 34578999999964 333444444443334567788887664211 1 123446899999999999999987652211
Q ss_pred CCCCchHHHHHHHHHHhcCCchHHHHH
Q 020206 157 HPDASYIELTHEAIKYAQGVPIALKIL 183 (329)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~g~Plal~~~ 183 (329)
. ...++.+..+++.++|+|..+...
T Consensus 184 ~--~~~~~~~~~l~~~~~G~~r~a~~~ 208 (323)
T 1sxj_B 184 V--KYTNDGLEAIIFTAEGDMRQAINN 208 (323)
T ss_dssp C--CBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred C--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 133466889999999999654433
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.09 E-value=9.3e-09 Score=89.82 Aligned_cols=237 Identities=14% Similarity=0.084 Sum_probs=133.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+.+.|+|++|+|||++|+.+++..... ..++. ........++.. .+ .. ...
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~---~~~~~----~~~~~~~~~l~~----~l-----------------~~-~~~ 89 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTS----GPAIEKPGDLAA----IL-----------------AN-SLE 89 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCC---EEEEC----TTTCCSHHHHHH----HH-----------------TT-TCC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe----ccccCChHHHHH----HH-----------------HH-hcc
Confidence 568999999999999999999876422 22332 111111222211 11 10 013
Q ss_pred ceEEEEEecCCCh--hhHHHHhcccCCC------------------CCCcEEEEEeCchhHH-Hhc--CCCeEEEecCCC
Q 020206 84 KKVLIVFDDVNHP--RQIEFLIGNLDWF------------------ASGSRILITARDKQAL-INC--GVNKIYQIKELV 140 (329)
Q Consensus 84 ~~~LlvlDdv~~~--~~~~~l~~~l~~~------------------~~~~~ilitsr~~~~~-~~~--~~~~~~~l~~l~ 140 (329)
.+.+|++|+++.. .....++..+... .++..+|.+|...... ..+ .....+.+++++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 4569999999643 2333333222110 1234566666543211 111 122578999999
Q ss_pred hhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCC---------CHHHHHHHHHhhccCChhhHH
Q 020206 141 HVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK---------RKEVWENAISKLEMVPQMEIQ 211 (329)
Q Consensus 141 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~---------~~~~~~~~~~~l~~~~~~~~~ 211 (329)
.++..+++......... ...++....+++.+.|+|..+..+...+... ....+.....
T Consensus 170 ~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~----------- 236 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALA----------- 236 (324)
T ss_dssp HHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-----------
Confidence 99999999887633221 2345678999999999999888776554321 1111211111
Q ss_pred HHHHhhhcCCChhhHhHHHhhh-ccc-CccChhHHHHHHHhCCcchhhhHHH-HhhccceeeecCCceeccHHHHH
Q 020206 212 EVLKISYDGLDDKEKNIFLDIA-CFL-VGEDRDIVTKYLNACEFFATSGIEV-LVDKSLITISEYNKIRMHDLMRN 284 (329)
Q Consensus 212 ~~l~~~~~~L~~~~~~~l~~ls-~~~-~~~~~~~l~~~~~~~~~~~~~~l~~-L~~~~Ll~~~~~~~~~~H~lir~ 284 (329)
.+......+++.++..+..+. .+. ..++...++..++.+.......++. +.+.++++....|+ .+-+...+
T Consensus 237 -~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~-~~~~~~~~ 310 (324)
T 1hqc_A 237 -ALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGR-VPTELAYR 310 (324)
T ss_dssp -HHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEE-EECHHHHH
T ss_pred -HhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccc-eecHHHHH
Confidence 112223457777777776655 333 3466777777775544344444444 88899998776664 33333333
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=2.7e-09 Score=93.22 Aligned_cols=163 Identities=15% Similarity=0.072 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC-Cc-eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF-EG-SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
+.+.|+|++|+|||++|+.+++.+.... .. .+.+. .........+.. ....+..... ..
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~--------------~~ 107 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASDERGINVIRE----KVKEFARTKP--------------IG 107 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTCHHHHHTTHH----HHHHHHHSCC--------------GG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-ccccCchHHHHH----HHHHHHhhCC--------------cC
Confidence 3589999999999999999998864321 11 22222 111101011111 1111111100 11
Q ss_pred cCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhHH-Hh-cCCCeEEEecCCChhhhHHHHhhhhcCCCC
Q 020206 82 TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQAL-IN-CGVNKIYQIKELVHVDALKLLNQCAFGRDH 157 (329)
Q Consensus 82 ~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~~-~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~ 157 (329)
.+++.++|+||++. ......+...+.....+.++|+|+...... .. ......+.+++++.++..+++...+.....
T Consensus 108 ~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~ 187 (327)
T 1iqp_A 108 GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL 187 (327)
T ss_dssp GCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 24677999999964 344555555444445577888888665211 11 123357899999999999999887633221
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 158 PDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 158 ~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
...++.++.|++.++|+|..+..+...+
T Consensus 188 --~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 188 --ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp --EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 2345678899999999999766555443
No 17
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.02 E-value=9.7e-09 Score=89.36 Aligned_cols=161 Identities=12% Similarity=0.032 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC-CCc-eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR-FEG-SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.|+|++|+|||++|+.+++.+... +.. .+.+. .........+.+...... ... ....
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~--------------~~~~ 100 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGIDVVRHKIKEFA----RTA--------------PIGG 100 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCTTTSSHHHHHHH----HSC--------------CSSS
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccChHHHHHHHHHHH----hcC--------------CCCC
Confidence 48999999999999999999886322 111 12222 111000011111111110 000 0012
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhH-HHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQA-LIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~-~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
+++.++|+|+++. ......+...+.....+..+|++|..... ... ......+.+.+++.++..+++...+.....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~- 179 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV- 179 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 4578999999953 34455565555544566777877765431 111 234468999999999999999887633221
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILGRF 186 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~~~ 186 (329)
...++.+..++..++|++..+......
T Consensus 180 -~i~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 180 -KITEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp -CBCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 234567889999999999876555433
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.94 E-value=1.6e-08 Score=90.13 Aligned_cols=172 Identities=14% Similarity=0.049 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHH----hcCCCCCCCCCcchHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTL----LNDGNMNKFPNIGLNFQSK 79 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~l~~ 79 (329)
..+.|+|++|+|||++++.+++......... ... + ..... ...+.... ................+.+
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~----~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP----C---GVCDN-CREIEQGRFVDLIEIDAASRTKVEDTRDLLD 109 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC----C---SSSHH-HHHHHTSCCSSCEEEETTCSCCSSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC----C---cccHH-HHHHhccCCCceEEecccccCCHHHHHHHHH
Confidence 4689999999999999999998765332110 000 0 00000 00111000 0000000000111222222
Q ss_pred hh-----cCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhH-H-HhcCCCeEEEecCCChhhhHHHHhh
Q 020206 80 RL-----TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQA-L-INCGVNKIYQIKELVHVDALKLLNQ 150 (329)
Q Consensus 80 ~~-----~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~-~-~~~~~~~~~~l~~l~~~e~~~ll~~ 150 (329)
.+ .+++.+||+||++. ......++..+...+.+..+|++|..... . ........+.+++++.++..+++..
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~ 189 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred HHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHH
Confidence 22 24568999999953 44556666555544556677777764421 1 1123457899999999999999987
Q ss_pred hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206 151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRF 186 (329)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 186 (329)
.+..... ...++.+..|++.++|+|..+..+...
T Consensus 190 ~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l~~ 223 (373)
T 1jr3_A 190 ILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQ 223 (373)
T ss_dssp HHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 6522111 133566888999999999988766543
No 19
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.92 E-value=3.6e-08 Score=86.68 Aligned_cols=236 Identities=14% Similarity=0.131 Sum_probs=130.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+.|.|+|++|+|||+||+.+++.....| +.+. .... .....+.. .+.. ..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~~---~~~~~~~~---------------------~~~~--~~ 105 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APMI---EKSGDLAA---------------------ILTN--LS 105 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGGC---CSHHHHHH---------------------HHHT--CC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chhc---cchhHHHH---------------------HHHh--cc
Confidence 4689999999999999999988764322 1221 1111 11111111 1111 23
Q ss_pred ceEEEEEecCCC--hhhHHHHhcccCCC------------------CCCcEEEEEeCchhHH-H--hcCCCeEEEecCCC
Q 020206 84 KKVLIVFDDVNH--PRQIEFLIGNLDWF------------------ASGSRILITARDKQAL-I--NCGVNKIYQIKELV 140 (329)
Q Consensus 84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~------------------~~~~~ilitsr~~~~~-~--~~~~~~~~~l~~l~ 140 (329)
.+.+|+||+++. ......++..+... .++..+|.+|...... . .......+.+++++
T Consensus 106 ~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~ 185 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYK 185 (338)
T ss_dssp TTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred CCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcC
Confidence 456999999953 33333333322211 1124566665543211 1 11233689999999
Q ss_pred hhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhhHHHHH---Hhh
Q 020206 141 HVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVL---KIS 217 (329)
Q Consensus 141 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~l---~~~ 217 (329)
.++...++........ ....++..+.+++.+.|+|..+..+...+.. +... ..-.....+.+...+ ...
T Consensus 186 ~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~-----~a~~-~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 186 DSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRD-----FADV-NDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHH-----HHHH-TTCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH-----HHHh-hcCCccCHHHHHHHHHHhCCc
Confidence 9999999987763221 2234567888999999999776665544311 0000 000001111222222 222
Q ss_pred hcCCChhhHhHHHhhhccc-CccChhHHHHHHHhCCcchhhhHH-HHhhccceeeecCCcee
Q 020206 218 YDGLDDKEKNIFLDIACFL-VGEDRDIVTKYLNACEFFATSGIE-VLVDKSLITISEYNKIR 277 (329)
Q Consensus 218 ~~~L~~~~~~~l~~ls~~~-~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Ll~~~~~~~~~ 277 (329)
...+....++++..++-.. ..++...++..++.+.......++ .|.+.++|.....|+..
T Consensus 258 ~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~ 319 (338)
T 3pfi_A 258 ELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIA 319 (338)
T ss_dssp TTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEE
T ss_pred ccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCcccc
Confidence 3345555566666665442 235677777777655555555666 89999999887666543
No 20
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.90 E-value=5.1e-08 Score=85.52 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=67.0
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
+++-++|+|+++. .+....++..+...+.+..+|++|.+.. .... .+....+.+++++.++..+++....
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------ 180 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------ 180 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------
Confidence 4567999999963 4556667766665555677777776542 2221 2455789999999999999998775
Q ss_pred CCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206 159 DASYIELTHEAIKYAQGVPIALKILGR 185 (329)
Q Consensus 159 ~~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (329)
...++.+..+++.++|.|..+..+..
T Consensus 181 -~~~~~~~~~l~~~s~G~~r~a~~~l~ 206 (334)
T 1a5t_A 181 -TMSQDALLAALRLSAGSPGAALALFQ 206 (334)
T ss_dssp -CCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 12245578899999999987655543
No 21
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.90 E-value=4.2e-09 Score=87.76 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=91.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.+.|+|++|+|||+|++.+++........+.++. ....... . ...+ +.+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~--~------------------------~~~~-~~~- 102 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI--S------------------------TALL-EGL- 102 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS--C------------------------GGGG-TTG-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH--H------------------------HHHH-Hhc-
Confidence 567899999999999999999998765544455554 1111110 0 0000 011
Q ss_pred CceEEEEEecCCChh--h--HHHHhcccCCC-CCCc-EEEEEeCchhH---------HHhcCCCeEEEecCCChhhhHHH
Q 020206 83 RKKVLIVFDDVNHPR--Q--IEFLIGNLDWF-ASGS-RILITARDKQA---------LINCGVNKIYQIKELVHVDALKL 147 (329)
Q Consensus 83 ~~~~LlvlDdv~~~~--~--~~~l~~~l~~~-~~~~-~ilitsr~~~~---------~~~~~~~~~~~l~~l~~~e~~~l 147 (329)
.++.+|++||++... . ...+...+... ..+. .+|+||+.... ...+.....+.+++++.++..++
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~ 182 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAA 182 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHH
Confidence 345699999995321 1 22232221110 1222 47777764321 11111226799999999999999
Q ss_pred HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
+...+..... ...++.++.+++.++|++..+..+...+
T Consensus 183 l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~~~ 220 (242)
T 3bos_A 183 LQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLDRL 220 (242)
T ss_dssp HHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9887632211 2335678899999999998776655444
No 22
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.89 E-value=9.5e-09 Score=93.52 Aligned_cols=164 Identities=13% Similarity=0.084 Sum_probs=96.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
.+.+.|+|++|+|||+|++.+++.....++. ++++. ...+...+...+... ....+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----------~~~~~~~~~~~~~~~---------~~~~~~~~ 190 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG---------KLNEFREK 190 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----------HHHHHHHHHHHHHTT---------CHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHcc---------cHHHHHHH
Confidence 3568999999999999999999987655422 33333 112223333332211 12233333
Q ss_pred hcCceEEEEEecCCCh----hhHHHHhcccCC-CCCCcEEEEEeCchhH---------HHhcCCCeEEEecCCChhhhHH
Q 020206 81 LTRKKVLIVFDDVNHP----RQIEFLIGNLDW-FASGSRILITARDKQA---------LINCGVNKIYQIKELVHVDALK 146 (329)
Q Consensus 81 ~~~~~~LlvlDdv~~~----~~~~~l~~~l~~-~~~~~~ilitsr~~~~---------~~~~~~~~~~~l~~l~~~e~~~ 146 (329)
...++.+|+|||++.. ...+.++..+.. ...+..+|+||.+... ...+.....+.+++++.++..+
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~ 270 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKS 270 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHH
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHH
Confidence 3335679999999422 233334333221 1346678888876321 1112233567899999999999
Q ss_pred HHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 147 LLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 147 ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
++...+..... ...++++..|+..+.|++..+..+...+
T Consensus 271 iL~~~~~~~~~--~i~~e~l~~la~~~~gn~R~l~~~L~~~ 309 (440)
T 2z4s_A 271 IARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLRGAIIKL 309 (440)
T ss_dssp HHHHHHHHHTC--CCCTTHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99877632111 1123457889999999998776654433
No 23
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.78 E-value=1.2e-07 Score=82.83 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=92.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.+.|+|++|+|||+|++.+++.....-...+++. . .++...+...+... ....+.....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~----~------~~~~~~~~~~~~~~---------~~~~~~~~~~ 97 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS----A------DDFAQAMVEHLKKG---------TINEFRNMYK 97 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE----H------HHHHHHHHHHHHHT---------CHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE----H------HHHHHHHHHHHHcC---------cHHHHHHHhc
Confidence 357899999999999999999998755423344443 1 12222222222211 1112222222
Q ss_pred CceEEEEEecCCCh----hhHHHHhcccCC-CCCCcEEEEEeCchhH---------HHhcCCCeEEEecCCChhhhHHHH
Q 020206 83 RKKVLIVFDDVNHP----RQIEFLIGNLDW-FASGSRILITARDKQA---------LINCGVNKIYQIKELVHVDALKLL 148 (329)
Q Consensus 83 ~~~~LlvlDdv~~~----~~~~~l~~~l~~-~~~~~~ilitsr~~~~---------~~~~~~~~~~~l~~l~~~e~~~ll 148 (329)
++.+|++||++.. .....+...+.. ...+..+|+|+..... ...+.....+.+++ +.++..+++
T Consensus 98 -~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 98 -SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 175 (324)
T ss_dssp -TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred -CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence 3569999999532 222333322211 1235577777764321 11122335789999 999999999
Q ss_pred hhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206 149 NQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRF 186 (329)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 186 (329)
...+..... ...++....|++.+ |++..+..+...
T Consensus 176 ~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~l~~~l~~ 210 (324)
T 1l8q_A 176 KEKLKEFNL--ELRKEVIDYLLENT-KNVREIEGKIKL 210 (324)
T ss_dssp HHHHHHTTC--CCCHHHHHHHHHHC-SSHHHHHHHHHH
T ss_pred HHHHHhcCC--CCCHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 887632221 23356788899999 988765554433
No 24
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.77 E-value=6.5e-08 Score=83.51 Aligned_cols=146 Identities=8% Similarity=0.056 Sum_probs=81.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCC-----Cc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF-----EG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLN 75 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 75 (329)
++.+.|+|++|+|||++++.+++.+.... +. .+++. .....+...++..|+.++.............+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~ 120 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMDALYEKIWFAISKENLCGDISLEALN 120 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--HHHHHHHHHHHSCCC--CCCCHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 56789999999999999999999875432 11 23333 223455667788888887554321111111122
Q ss_pred -HHHhh--hcCceEEEEEecCCCh---hhHHHHhcccCCCCCCcEEEEEeCch---h-HHHh---cC-CCeEEEecCCCh
Q 020206 76 -FQSKR--LTRKKVLIVFDDVNHP---RQIEFLIGNLDWFASGSRILITARDK---Q-ALIN---CG-VNKIYQIKELVH 141 (329)
Q Consensus 76 -~l~~~--~~~~~~LlvlDdv~~~---~~~~~l~~~l~~~~~~~~ilitsr~~---~-~~~~---~~-~~~~~~l~~l~~ 141 (329)
.+... ..+++++++||+++.. +.+-.++...........+|.++... . .+.. .+ ....+.+++++.
T Consensus 121 ~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~ 200 (318)
T 3te6_A 121 FYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDK 200 (318)
T ss_dssp HHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCH
T ss_pred HHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCH
Confidence 22221 2456899999999653 22222322111111223344344332 1 1110 01 125799999999
Q ss_pred hhhHHHHhhhh
Q 020206 142 VDALKLLNQCA 152 (329)
Q Consensus 142 ~e~~~ll~~~~ 152 (329)
+|..+++..++
T Consensus 201 ~el~~Il~~Rl 211 (318)
T 3te6_A 201 NELQQMIITRL 211 (318)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999887
No 25
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=1.6e-07 Score=87.22 Aligned_cols=168 Identities=13% Similarity=0.090 Sum_probs=88.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHH--hh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS--KR 80 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~--~~ 80 (329)
.+.+.|+|++|+|||++|+.+++... +. .+.+. .+.... ..+....+........ ... ...... ..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in----~s~~~~-~~~~~~~i~~~~~~~~---~~~-~~~~~~~~~~ 144 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN----ASDVRS-KTLLNAGVKNALDNMS---VVG-YFKHNEEAQN 144 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC----TTSCCC-HHHHHHTGGGGTTBCC---STT-TTTC----CC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe----CCCcch-HHHHHHHHHHHhcccc---HHH-HHhhhhhhhh
Confidence 37899999999999999999998872 11 22222 111111 1222222222111110 000 000000 01
Q ss_pred hcCceEEEEEecCCCh-----hhHHHHhcccCCCCCCcEEEEEeCchh---HHHhcCCCeEEEecCCChhhhHHHHhhhh
Q 020206 81 LTRKKVLIVFDDVNHP-----RQIEFLIGNLDWFASGSRILITARDKQ---ALINCGVNKIYQIKELVHVDALKLLNQCA 152 (329)
Q Consensus 81 ~~~~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ilitsr~~~---~~~~~~~~~~~~l~~l~~~e~~~ll~~~~ 152 (329)
...++.+|++|+++.. ..+..+...+.. .+..+|+++.+.. ..........+.+++++.++..+++...+
T Consensus 145 ~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 145 LNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp SSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHH
Confidence 2356789999999432 112333332221 2334555444321 11222345678999999999999987765
Q ss_pred cCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206 153 FGRDHPDASYIELTHEAIKYAQGVPIALKILGRF 186 (329)
Q Consensus 153 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 186 (329)
...... ..++.+..|++.++|++..+..+...
T Consensus 223 ~~~~~~--i~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 223 IREKFK--LDPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp HHHTCC--CCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred HHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 221111 11244888999999977665554433
No 26
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.76 E-value=4e-07 Score=76.81 Aligned_cols=160 Identities=12% Similarity=0.039 Sum_probs=84.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+-+.|+|++|+|||++|+.+++..... .+.+. .........- . .... ....+.....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~---~~~~~-~~~~~~~~~~-~-~~~~----------------~~~~~~~a~~ 96 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVP---FLAMA-GAEFVEVIGG-L-GAAR----------------VRSLFKEARA 96 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCC---EEEEE-TTTTSSSSTT-H-HHHH----------------HHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC---EEEec-hHHHHhhccC-h-hHHH----------------HHHHHHHHHh
Confidence 3568899999999999999999876432 12222 1111110000 0 0000 1112222223
Q ss_pred CceEEEEEecCCCh-----------------hhHHHHhcccCCC--CCCcEEEEEeCchhHHH-h-c---CCCeEEEecC
Q 020206 83 RKKVLIVFDDVNHP-----------------RQIEFLIGNLDWF--ASGSRILITARDKQALI-N-C---GVNKIYQIKE 138 (329)
Q Consensus 83 ~~~~LlvlDdv~~~-----------------~~~~~l~~~l~~~--~~~~~ilitsr~~~~~~-~-~---~~~~~~~l~~ 138 (329)
..+.+|+||+++.. ..+..++..+... ..+..+|.||....... . . .....+.++.
T Consensus 97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 45789999999643 1123333332211 22445566665443211 1 1 2346788999
Q ss_pred CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch-HHHHHHh
Q 020206 139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI-ALKILGR 185 (329)
Q Consensus 139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 185 (329)
.+.++-.+++........ ...........++..+.|++- .|..+..
T Consensus 177 p~~~~r~~il~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLK-LTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp CCHHHHHHHHHHHHHHTT-CCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999987663222 222222235778888888754 5555443
No 27
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.75 E-value=3.6e-07 Score=81.14 Aligned_cols=99 Identities=10% Similarity=-0.039 Sum_probs=60.7
Q ss_pred eEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCc------------h-hH-HHhcCCCeEEEecCCChhhhHHHH
Q 020206 85 KVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARD------------K-QA-LINCGVNKIYQIKELVHVDALKLL 148 (329)
Q Consensus 85 ~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~------------~-~~-~~~~~~~~~~~l~~l~~~e~~~ll 148 (329)
+.+|+||+++. .+....+...+...... .+++++.. . .. .........+.+++++.++..+++
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 268 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQIL 268 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHH
Confidence 46999999953 34455555544432223 34444431 1 00 111233456899999999999999
Q ss_pred hhhhcCCCCCCCchHHHHHHHHHHhc-CCchHHHHHHhh
Q 020206 149 NQCAFGRDHPDASYIELTHEAIKYAQ-GVPIALKILGRF 186 (329)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plal~~~~~~ 186 (329)
...+.... ....++.+..|++.+. |+|..+..+...
T Consensus 269 ~~~~~~~~--~~~~~~~l~~l~~~~~~G~~r~~~~ll~~ 305 (368)
T 3uk6_A 269 RIRCEEED--VEMSEDAYTVLTRIGLETSLRYAIQLITA 305 (368)
T ss_dssp HHHHHHTT--CCBCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHcC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 97763222 1244567899999998 999877665543
No 28
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.75 E-value=4.1e-07 Score=77.32 Aligned_cols=146 Identities=12% Similarity=0.016 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.+.|+|++|+|||+||+.+++.... +.+.+.+ ..... .......... ....+.....
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~--~~~~i~~-~~~~~-g~~~~~~~~~-----------------~~~~~~~~~~ 122 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNF--PFIKICS-PDKMI-GFSETAKCQA-----------------MKKIFDDAYK 122 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTC--SEEEEEC-GGGCT-TCCHHHHHHH-----------------HHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCC--CEEEEeC-HHHhc-CCchHHHHHH-----------------HHHHHHHHHh
Confidence 467899999999999999999987532 2222211 11000 0000000000 1111222233
Q ss_pred CceEEEEEecCCCh------------hhHHHHhcccCC---CCCCcEEEEEeCchhHHHh--c--CCCeEEEecCCCh-h
Q 020206 83 RKKVLIVFDDVNHP------------RQIEFLIGNLDW---FASGSRILITARDKQALIN--C--GVNKIYQIKELVH-V 142 (329)
Q Consensus 83 ~~~~LlvlDdv~~~------------~~~~~l~~~l~~---~~~~~~ilitsr~~~~~~~--~--~~~~~~~l~~l~~-~ 142 (329)
..+.+|+||+++.. ..+..+...+.. ......+|.||........ . .....+.+++++. +
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~ 202 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGE 202 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHH
Confidence 56789999998432 223333333322 1223345666666543332 1 2346788998887 6
Q ss_pred hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCC
Q 020206 143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV 176 (329)
Q Consensus 143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 176 (329)
+...++.... . ..++....+++.+.|.
T Consensus 203 ~i~~i~~~~~----~---~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 203 QLLEALELLG----N---FKDKERTTIAQQVKGK 229 (272)
T ss_dssp HHHHHHHHHT----C---SCHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcC----C---CCHHHHHHHHHHhcCC
Confidence 6666665432 1 1245588888998884
No 29
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=5.8e-07 Score=79.24 Aligned_cols=170 Identities=11% Similarity=0.063 Sum_probs=93.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC--CCc-eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR--FEG-SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
-+.|+|++|+|||++|+.+++.+... +.. ...+. . ...... ..+......+...... ... ........
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~-~~~---~~~~~~~~ 130 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN-A---SDERGI-SIVREKVKNFARLTVS-KPS---KHDLENYP 130 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC-S---SSCCCH-HHHTTHHHHHHHSCCC-CCC---TTHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc-c---ccccch-HHHHHHHHHHhhhccc-ccc---hhhcccCC
Confidence 48999999999999999999875421 211 22222 1 111122 2222222222221110 000 00111111
Q ss_pred cCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCC
Q 020206 82 TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDH 157 (329)
Q Consensus 82 ~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~ 157 (329)
...+-+|++|+++. ......++..+.......++|+++.... .... ......+.+.+++.++...++...+.....
T Consensus 131 ~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~ 210 (353)
T 1sxj_D 131 CPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENV 210 (353)
T ss_dssp CCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCC
Confidence 23557999999853 3334445444443345667777765442 1111 122347889999999999999887633221
Q ss_pred CCCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206 158 PDASYIELTHEAIKYAQGVPIALKILGR 185 (329)
Q Consensus 158 ~~~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (329)
...++.++.|++.++|+|..+..+..
T Consensus 211 --~i~~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 211 --KCDDGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp --CCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23356789999999999987555443
No 30
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.74 E-value=1.9e-07 Score=79.89 Aligned_cols=156 Identities=16% Similarity=0.180 Sum_probs=84.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+-+.|+|++|+|||+||+.+++..... +............ ...... .....+.....
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~----~~~v~~~~~~~~~-~~~~~~-----------------~~~~~~~~~~~ 108 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNAT----FIRVVGSELVKKF-IGEGAS-----------------LVKDIFKLAKE 108 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCE----EEEEEGGGGCCCS-TTHHHH-----------------HHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehHHHHHhc-cchHHH-----------------HHHHHHHHHHH
Confidence 3568999999999999999999876432 2221111111100 000000 01111222233
Q ss_pred CceEEEEEecCCCh----------------hhHHHHhcccC--CCCCCcEEEEEeCchhHHH-----hcCCCeEEEecCC
Q 020206 83 RKKVLIVFDDVNHP----------------RQIEFLIGNLD--WFASGSRILITARDKQALI-----NCGVNKIYQIKEL 139 (329)
Q Consensus 83 ~~~~LlvlDdv~~~----------------~~~~~l~~~l~--~~~~~~~ilitsr~~~~~~-----~~~~~~~~~l~~l 139 (329)
..+.+|+||+++.. ..+..++..+. ....+..+|.||....... .......+.++.+
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p 188 (285)
T 3h4m_A 109 KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAP 188 (285)
T ss_dssp TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCC
T ss_pred cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCC
Confidence 45689999999432 11222332221 1123455666776442111 1123347889999
Q ss_pred ChhhhHHHHhhhhcCCCC-CCCchHHHHHHHHHHhcC-CchHHHHHH
Q 020206 140 VHVDALKLLNQCAFGRDH-PDASYIELTHEAIKYAQG-VPIALKILG 184 (329)
Q Consensus 140 ~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~g-~Plal~~~~ 184 (329)
+.++-.+++......... .... ...++..+.| +|..|..+.
T Consensus 189 ~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~l~ 231 (285)
T 3h4m_A 189 DEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKAIC 231 (285)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHHHH
Confidence 999999999887633221 1112 6778888887 555665544
No 31
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.70 E-value=1.5e-07 Score=85.65 Aligned_cols=157 Identities=16% Similarity=0.188 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+.+.|+|++|+|||+||+.+++.....|. .+. . ......++. .+.... ......+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~----a-~~~~~~~ir-~~~~~a----------------~~~~~~~ 105 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVE---RIS----A-VTSGVKEIR-EAIERA----------------RQNRNAG 105 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE----T-TTCCHHHHH-HHHHHH----------------HHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE----e-ccCCHHHHH-HHHHHH----------------HHhhhcC
Confidence 56899999999999999999988653321 111 0 011222221 111110 1111235
Q ss_pred ceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEE-EeCchhH---HHhcCCCeEEEecCCChhhhHHHHhhhhcCCC-
Q 020206 84 KKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILI-TARDKQA---LINCGVNKIYQIKELVHVDALKLLNQCAFGRD- 156 (329)
Q Consensus 84 ~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ili-tsr~~~~---~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~- 156 (329)
++.+|+||+++.. .....++..+.. ....+|. ||.+... .........+.+++++.++...++........
T Consensus 106 ~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~ 183 (447)
T 3pvs_A 106 RRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTR 183 (447)
T ss_dssp CCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTT
T ss_pred CCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhh
Confidence 6789999999542 333334444331 2334444 4444321 11123456888999999999999988763311
Q ss_pred ----CCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 157 ----HPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 157 ----~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
......++..+.|++.++|++..+..+...+
T Consensus 184 ~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a 218 (447)
T 3pvs_A 184 GYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM 218 (447)
T ss_dssp SSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 1122456778999999999998776655443
No 32
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.68 E-value=1.6e-06 Score=75.46 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhc--CChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET--GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
+-|.|+|++|+|||+||+.+++.... ..++.......... ...... ....+....
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~~~g~~~~~--------------------~~~lf~~a~ 102 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSKWLGESEKL--------------------VKNLFQLAR 102 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCSSCCSCHHH--------------------HHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhhhhhHHHHH--------------------HHHHHHHHH
Confidence 67999999999999999999988621 11221111111000 001111 111122222
Q ss_pred cCceEEEEEecCCCh-------------hhHHHHhcccCC---CCCCcEEEEEeCchh----HHHhcCCCeEEEecCCCh
Q 020206 82 TRKKVLIVFDDVNHP-------------RQIEFLIGNLDW---FASGSRILITARDKQ----ALINCGVNKIYQIKELVH 141 (329)
Q Consensus 82 ~~~~~LlvlDdv~~~-------------~~~~~l~~~l~~---~~~~~~ilitsr~~~----~~~~~~~~~~~~l~~l~~ 141 (329)
..++.+|+||+++.. .....++..+.. ...+..+|.||.... .... .....+.++..+.
T Consensus 103 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~ 181 (322)
T 1xwi_A 103 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEP 181 (322)
T ss_dssp HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH-TCCEEEECCCCCH
T ss_pred hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh-hcCeEEEeCCcCH
Confidence 356789999999543 112233333221 123444555554431 1111 4446788899999
Q ss_pred hhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCC-chHHHHHHhh
Q 020206 142 VDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKILGRF 186 (329)
Q Consensus 142 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~ 186 (329)
++-.+++.......... ..+..+..|++.+.|+ +..|..++..
T Consensus 182 ~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 182 HARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp HHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999998876322211 1245588899999987 4456665543
No 33
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.68 E-value=1.3e-06 Score=76.11 Aligned_cols=158 Identities=14% Similarity=0.078 Sum_probs=87.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhc--CChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET--GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
.+-+.|+|++|+|||+||+.+++..... ++.......... ...... ....+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~~~g~~~~~--------------------~~~~f~~a 106 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSKWMGESEKL--------------------VKQLFAMA 106 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCE----EEEEEHHHHHTTTGGGHHHH--------------------HHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCC----EEEEchHHHhhcccchHHHH--------------------HHHHHHHH
Confidence 3568999999999999999999886432 222211111000 001111 11112222
Q ss_pred hcCceEEEEEecCCCh-------------hhHHHHhcccC---CCCCCcEEEEEeCchhHHH---hcCCCeEEEecCCCh
Q 020206 81 LTRKKVLIVFDDVNHP-------------RQIEFLIGNLD---WFASGSRILITARDKQALI---NCGVNKIYQIKELVH 141 (329)
Q Consensus 81 ~~~~~~LlvlDdv~~~-------------~~~~~l~~~l~---~~~~~~~ilitsr~~~~~~---~~~~~~~~~l~~l~~ 141 (329)
....+.+|+||+++.. .....++..+. ....+..+|.||....... .......+.++..+.
T Consensus 107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~ 186 (322)
T 3eie_A 107 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDL 186 (322)
T ss_dssp HHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCH
T ss_pred HhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCH
Confidence 2346789999999532 11233333322 2233445555665532111 013445778889999
Q ss_pred hhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcC-CchHHHHHHhh
Q 020206 142 VDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILGRF 186 (329)
Q Consensus 142 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~ 186 (329)
++-.+++......... ...+.....|++.+.| .+-.|..++..
T Consensus 187 ~~r~~il~~~~~~~~~--~~~~~~l~~la~~t~g~sg~di~~l~~~ 230 (322)
T 3eie_A 187 AARTTMFEINVGDTPC--VLTKEDYRTLGAMTEGYSGSDIAVVVKD 230 (322)
T ss_dssp HHHHHHHHHHHTTCCC--CCCHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999887733221 1224557889999987 45556555543
No 34
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.65 E-value=9.2e-07 Score=78.13 Aligned_cols=158 Identities=11% Similarity=0.063 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+-|.|+|++|+|||+||+.+++..... ++......... .... .........+......
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~----~~~v~~~~l~~-------------~~~g-----~~~~~~~~~f~~a~~~ 142 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVS-------------KWMG-----ESEKLVKQLFAMAREN 142 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCE----EEEEEHHHHHS-------------CC--------CHHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCC----EEEeeHHHHhh-------------hhcc-----hHHHHHHHHHHHHHHc
Confidence 458999999999999999999987422 22211111100 0000 0000011112222234
Q ss_pred ceEEEEEecCCChh-------------hHHHHhcccC---CCCCCcEEEEEeCchh----HHHhcCCCeEEEecCCChhh
Q 020206 84 KKVLIVFDDVNHPR-------------QIEFLIGNLD---WFASGSRILITARDKQ----ALINCGVNKIYQIKELVHVD 143 (329)
Q Consensus 84 ~~~LlvlDdv~~~~-------------~~~~l~~~l~---~~~~~~~ilitsr~~~----~~~~~~~~~~~~l~~l~~~e 143 (329)
.+.+|+||+++... ....++..+. ....+..||.||.... .... .....+.++..+.++
T Consensus 143 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 143 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAA 221 (355)
T ss_dssp SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH-TCCEEEECCCCCHHH
T ss_pred CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc-ccCEEEEeCCcCHHH
Confidence 67899999995321 1233333222 1123445555665441 1111 445678899999999
Q ss_pred hHHHHhhhhcCCCCCCCchHHHHHHHHHHhcC-CchHHHHHHhh
Q 020206 144 ALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILGRF 186 (329)
Q Consensus 144 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~ 186 (329)
-.+++......... ......+..|++.+.| .+..|..++..
T Consensus 222 r~~il~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l~~~ 263 (355)
T 2qp9_X 222 RTTMFEINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVVVKD 263 (355)
T ss_dssp HHHHHHHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999887632221 1124558889999998 45556665543
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.65 E-value=3.3e-07 Score=79.36 Aligned_cols=148 Identities=9% Similarity=0.071 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCC---ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE---GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
..+.|+|++|+|||++|+.+++.+..... ..+...+........ ...... .....+...
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~-----------------~~~~~~~~~ 129 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQY-IGHTAP-----------------KTKEVLKRA 129 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSS-TTCHHH-----------------HHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhc-ccccHH-----------------HHHHHHHhc
Confidence 36899999999999999999987644321 112222111110000 000000 011111111
Q ss_pred hcCceEEEEEecCC-----------ChhhHHHHhcccCCCCCCcEEEEEeCchhHHH------h--cCCCeEEEecCCCh
Q 020206 81 LTRKKVLIVFDDVN-----------HPRQIEFLIGNLDWFASGSRILITARDKQALI------N--CGVNKIYQIKELVH 141 (329)
Q Consensus 81 ~~~~~~LlvlDdv~-----------~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~------~--~~~~~~~~l~~l~~ 141 (329)
.+.+|+||+++ .......++..+.....+..+|+||....... . ......+.+++++.
T Consensus 130 ---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~ 206 (309)
T 3syl_A 130 ---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSD 206 (309)
T ss_dssp ---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCH
T ss_pred ---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCH
Confidence 24599999996 33445555555544445667777775432110 0 01236789999999
Q ss_pred hhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhc
Q 020206 142 VDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ 174 (329)
Q Consensus 142 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 174 (329)
++..+++...+.... ....++....+.+.+.
T Consensus 207 ~~~~~il~~~l~~~~--~~~~~~~~~~l~~~~~ 237 (309)
T 3syl_A 207 EELFEIAGHMLDDQN--YQMTPEAETALRAYIG 237 (309)
T ss_dssp HHHHHHHHHHHHHTT--CEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHH
Confidence 999999987763221 1223444555655543
No 36
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.62 E-value=1.4e-06 Score=79.25 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+-+.|+||+|+|||+||+.++..... ..++...... +.. ..... ........+.....
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~---------l~~----~~~g~-----~~~~~~~~f~~a~~ 225 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSD---------LVS----KWLGE-----SEKLVKNLFQLARE 225 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC---------------------------CCCTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHH---------HHh----hhcch-----HHHHHHHHHHHHHH
Confidence 367899999999999999999988621 1222211111 111 00010 01112222222233
Q ss_pred CceEEEEEecCCCh-------------hhHHHHhcccCCC---CCCcEEEEEeCchhHHH---hcCCCeEEEecCCChhh
Q 020206 83 RKKVLIVFDDVNHP-------------RQIEFLIGNLDWF---ASGSRILITARDKQALI---NCGVNKIYQIKELVHVD 143 (329)
Q Consensus 83 ~~~~LlvlDdv~~~-------------~~~~~l~~~l~~~---~~~~~ilitsr~~~~~~---~~~~~~~~~l~~l~~~e 143 (329)
..+.+|+||+++.. .....++..+... ..+..||.||....... .-.....+.++..+.++
T Consensus 226 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHA 305 (444)
T ss_dssp SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHH
T ss_pred cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHH
Confidence 56789999999643 1234454444321 23445665665442111 11344577888888888
Q ss_pred hHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCC-chHHHHHHhh
Q 020206 144 ALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKILGRF 186 (329)
Q Consensus 144 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~ 186 (329)
-..++......... ...+..+..|++.+.|. +..|..++..
T Consensus 306 r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~~~ 347 (444)
T 2zan_A 306 RAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADISIIVRD 347 (444)
T ss_dssp HHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 88888877632211 11235588899999984 5566655543
No 37
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=1.8e-06 Score=75.89 Aligned_cols=159 Identities=11% Similarity=0.124 Sum_probs=90.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcC-CCc-eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISRR-FEG-SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+.++||+|+||||+++.++..+... +.. ..... ......... .+.....+...... ..+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~----~~~~~~~~~-ir~~i~~~~~~~~~--------------~~~ 109 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN----ASDDRGIDV-VRNQIKDFASTRQI--------------FSK 109 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC----TTSCCSHHH-HHTHHHHHHHBCCS--------------SSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc----CcccccHHH-HHHHHHHHHhhccc--------------CCC
Confidence 8999999999999999999976432 111 11111 111112221 22222222111110 112
Q ss_pred ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHH-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206 84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 159 (329)
Q Consensus 84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 159 (329)
..-++|+|+++. ......+...+........+++++.... ... .......+.+.+++.++..+.+...+.....
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~-- 187 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKL-- 187 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC--
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCC--
Confidence 356899999853 3334444444433345666777665442 111 1233457899999999999998876622221
Q ss_pred CchHHHHHHHHHHhcCCchHHHHHHh
Q 020206 160 ASYIELTHEAIKYAQGVPIALKILGR 185 (329)
Q Consensus 160 ~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (329)
...++..+.+++.++|.+..+..+..
T Consensus 188 ~i~~~~~~~i~~~s~G~~r~~~~~l~ 213 (340)
T 1sxj_C 188 KLSPNAEKALIELSNGDMRRVLNVLQ 213 (340)
T ss_dssp CBCHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 13356688899999999986544433
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.58 E-value=1.2e-07 Score=75.72 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
.+.+.|+|++|+|||+|++.+++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999997643
No 39
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.58 E-value=3.9e-07 Score=79.49 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=87.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
..++.++|++|+|||++++.+++.+.. ..+.+. .+. .. .+.++..+..+..... ..
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~---~~~~i~----~~~-~~-~~~i~~~~~~~~~~~~---------------~~ 103 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNA---DMMFVN----GSD-CK-IDFVRGPLTNFASAAS---------------FD 103 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTE---EEEEEE----TTT-CC-HHHHHTHHHHHHHBCC---------------CS
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCC---CEEEEc----ccc-cC-HHHHHHHHHHHHhhcc---------------cC
Confidence 357788899999999999999988632 222222 111 11 2222222222211111 12
Q ss_pred CceEEEEEecCCChh---hHHHHhcccCCCCCCcEEEEEeCchhHHHh--cCCCeEEEecCCChhhhHHH-------Hhh
Q 020206 83 RKKVLIVFDDVNHPR---QIEFLIGNLDWFASGSRILITARDKQALIN--CGVNKIYQIKELVHVDALKL-------LNQ 150 (329)
Q Consensus 83 ~~~~LlvlDdv~~~~---~~~~l~~~l~~~~~~~~ilitsr~~~~~~~--~~~~~~~~l~~l~~~e~~~l-------l~~ 150 (329)
+++.+|++||++... ....+...+.....+..+|+||........ ......+.+++++.++-.++ +..
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~ 183 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTE 183 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 367899999997543 344444443322346678887766531110 11235789999998874333 222
Q ss_pred hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
.+.... ..-...+.+..+++.++|++..+......+
T Consensus 184 ~~~~~~-~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 184 ICKHEG-IAIADMKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp HHHHHT-CCBSCHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred HHHHcC-CCCCcHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 221111 111112668889999999988655444333
No 40
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=7.6e-07 Score=78.59 Aligned_cols=103 Identities=5% Similarity=0.057 Sum_probs=66.2
Q ss_pred CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHH-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206 83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHP 158 (329)
Q Consensus 83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 158 (329)
.++-++|+|+++. ......++..+.....+..+|++|.+.. ... .......+.+++++.++..+++...+.....
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~- 211 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI- 211 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 3566999999964 3334445444443345677887776542 111 1234478999999999999999877622111
Q ss_pred CCch-HHHHHHHHHHhcCCchHHHHHHhhh
Q 020206 159 DASY-IELTHEAIKYAQGVPIALKILGRFL 187 (329)
Q Consensus 159 ~~~~-~~~~~~i~~~~~g~Plal~~~~~~l 187 (329)
... ++.+..|++.++|++..+..+...+
T Consensus 212 -~~~~~~~l~~i~~~~~G~~r~a~~~l~~~ 240 (354)
T 1sxj_E 212 -QLETKDILKRIAQASNGNLRVSLLMLESM 240 (354)
T ss_dssp -EECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred -CCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 112 3558889999999998776665433
No 41
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.56 E-value=3e-06 Score=74.89 Aligned_cols=160 Identities=12% Similarity=0.070 Sum_probs=86.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.|.|+|++|+|||+||+.++..... .++..+........ ..... .. ....+.....
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~----~~~~i~~~~l~~~~-~g~~~-~~----------------~~~~~~~a~~ 174 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGA----TFFSISASSLTSKW-VGEGE-KM----------------VRALFAVARC 174 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTC----EEEEEEGGGGCCSS-TTHHH-HH----------------HHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC----eEEEEehHHhhccc-cchHH-HH----------------HHHHHHHHHh
Confidence 467899999999999999999987532 22222121111110 00000 00 1111122223
Q ss_pred CceEEEEEecCCCh-------------hhHHHHhcccCC----CCCCcEEEEEeCchhHH---HhcCCCeEEEecCCChh
Q 020206 83 RKKVLIVFDDVNHP-------------RQIEFLIGNLDW----FASGSRILITARDKQAL---INCGVNKIYQIKELVHV 142 (329)
Q Consensus 83 ~~~~LlvlDdv~~~-------------~~~~~l~~~l~~----~~~~~~ilitsr~~~~~---~~~~~~~~~~l~~l~~~ 142 (329)
..+.+|+||+++.. .....++..+.. ...+..+|.||...... ........+.++..+.+
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~ 254 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEAS 254 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHH
Confidence 45789999999321 112333333221 12344555566543111 11134457788889999
Q ss_pred hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcC-CchHHHHHHhh
Q 020206 143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILGRF 186 (329)
Q Consensus 143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~ 186 (329)
+-.+++...+...... ..++.+..|++.+.| .+..|..++..
T Consensus 255 ~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 255 ARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999888766322211 224568889999998 55566665543
No 42
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.53 E-value=6.3e-06 Score=72.13 Aligned_cols=142 Identities=12% Similarity=0.096 Sum_probs=80.3
Q ss_pred CCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhh
Q 020206 130 VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQME 209 (329)
Q Consensus 130 ~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 209 (329)
......+++.+.++..+++.+...... ....++.+..|++.+.|.|..+..+...+... . . ...-.....+.
T Consensus 171 ~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~----a-~-~~~~~~It~~~ 242 (334)
T 1in4_A 171 FGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDM----L-T-VVKADRINTDI 242 (334)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHH----H-H-HHTCSSBCHHH
T ss_pred cCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHH----H-H-HcCCCCcCHHH
Confidence 334678999999999999987752211 12345678999999999998665554433110 0 0 00000111222
Q ss_pred HHHHHHh---hhcCCChhhHhHHHhhh-cc-cCccChhHHHHHHHhCCcchhhhHH-HHhhccceeeecCCceecc
Q 020206 210 IQEVLKI---SYDGLDDKEKNIFLDIA-CF-LVGEDRDIVTKYLNACEFFATSGIE-VLVDKSLITISEYNKIRMH 279 (329)
Q Consensus 210 ~~~~l~~---~~~~L~~~~~~~l~~ls-~~-~~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Ll~~~~~~~~~~H 279 (329)
+..++.. .-..++...+..+..+. .| ..+.....++..++.+....++..+ .|...|+|+....|+.-..
T Consensus 243 v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~i~~~~~gr~~~~ 318 (334)
T 1in4_A 243 VLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTE 318 (334)
T ss_dssp HHHHHHHHTCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEEECH
T ss_pred HHHHHHHhCCCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcCCeecccccHHhhH
Confidence 3333322 11245555556655444 23 3346667777666544323333333 7889999999888876544
No 43
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=5.5e-06 Score=73.45 Aligned_cols=148 Identities=14% Similarity=0.166 Sum_probs=82.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcC--ChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG--KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
++=|.++||||+|||.||+.++......| +.........+. .....++. .+...
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~vGese~~vr~--------------------lF~~A 237 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKYIGEGSRMVRE--------------------LFVMA 237 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSSTTHHHHHHHH--------------------HHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhccccchHHHHHHH--------------------HHHHH
Confidence 35689999999999999999999875432 222222221111 01111111 12222
Q ss_pred hcCceEEEEEecCCCh----------------hhHHHHhcccCCC--CCCcEEEEEeCchh-----HHHhcCCCeEEEec
Q 020206 81 LTRKKVLIVFDDVNHP----------------RQIEFLIGNLDWF--ASGSRILITARDKQ-----ALINCGVNKIYQIK 137 (329)
Q Consensus 81 ~~~~~~LlvlDdv~~~----------------~~~~~l~~~l~~~--~~~~~ilitsr~~~-----~~~~~~~~~~~~l~ 137 (329)
-...+++|++|+++.. ..+..++..+... ..+..||.||.... ..+..+....+.++
T Consensus 238 r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~ 317 (405)
T 4b4t_J 238 REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFP 317 (405)
T ss_dssp HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECC
T ss_pred HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcC
Confidence 3456899999999421 0123333333221 22334555554432 22222455688999
Q ss_pred CCChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCch
Q 020206 138 ELVHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPI 178 (329)
Q Consensus 138 ~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl 178 (329)
..+.++-.++|+.....-. ..+.+ +..|++.|.|..-
T Consensus 318 lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SG 355 (405)
T 4b4t_J 318 PPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSG 355 (405)
T ss_dssp CCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCH
T ss_pred CcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCH
Confidence 8898888888877663322 12212 6778888887643
No 44
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.49 E-value=7.4e-06 Score=73.28 Aligned_cols=155 Identities=16% Similarity=0.105 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhc--CChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET--GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
+-|.|+|++|+|||+||+.++..... .++..+....... ...... ....+....
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~~----~~~~v~~~~l~~~~~g~~~~~--------------------~~~~~~~a~ 204 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESNA----TFFNISAASLTSKYVGEGEKL--------------------VRALFAVAR 204 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTC----EEEEECSCCC-------CHHH--------------------HHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcC----cEEEeeHHHhhccccchHHHH--------------------HHHHHHHHH
Confidence 67999999999999999999887532 2222212111110 000011 111122222
Q ss_pred cCceEEEEEecCCCh-------------hhHHHHhcccC---C-CCCCcEEEEEeCchhHH---HhcCCCeEEEecCCCh
Q 020206 82 TRKKVLIVFDDVNHP-------------RQIEFLIGNLD---W-FASGSRILITARDKQAL---INCGVNKIYQIKELVH 141 (329)
Q Consensus 82 ~~~~~LlvlDdv~~~-------------~~~~~l~~~l~---~-~~~~~~ilitsr~~~~~---~~~~~~~~~~l~~l~~ 141 (329)
...+.+|+||+++.. .....++..+. . ......||.||...... ........+.++..+.
T Consensus 205 ~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~ 284 (389)
T 3vfd_A 205 ELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNE 284 (389)
T ss_dssp HSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCH
T ss_pred hcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCH
Confidence 335679999999532 11222222221 1 12234555566543211 1113335688899999
Q ss_pred hhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch-HHHHHH
Q 020206 142 VDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI-ALKILG 184 (329)
Q Consensus 142 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 184 (329)
++-.+++...+..... ...++.+..|+..+.|..- .|..+.
T Consensus 285 ~~r~~il~~~~~~~~~--~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 285 ETRLLLLKNLLCKQGS--PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HHHHHHHHHHHTTSCC--CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999877632221 1234568889999988655 555544
No 45
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.46 E-value=5.2e-06 Score=71.31 Aligned_cols=157 Identities=18% Similarity=0.106 Sum_probs=83.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhc--CChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET--GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
.+.+.|+|++|+|||++|+.++......| +.+. ....... .......+ ..+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~~~~~~~~~~~~~--------------------~~~~~~ 109 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLTSKYVGDGEKLVR--------------------ALFAVA 109 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTSSSSCSCHHHHHH--------------------HHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHhhcccchHHHHHH--------------------HHHHHH
Confidence 46789999999999999999998764221 1121 1111100 01111111 111222
Q ss_pred hcCceEEEEEecCCCh-------------hhHHHHhccc---CCC--CCCcEEEEEeCchhHHH---hcCCCeEEEecCC
Q 020206 81 LTRKKVLIVFDDVNHP-------------RQIEFLIGNL---DWF--ASGSRILITARDKQALI---NCGVNKIYQIKEL 139 (329)
Q Consensus 81 ~~~~~~LlvlDdv~~~-------------~~~~~l~~~l---~~~--~~~~~ilitsr~~~~~~---~~~~~~~~~l~~l 139 (329)
....+.+|++|+++.. .....++..+ ... ..+..+|.||....... .......+.++..
T Consensus 110 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p 189 (297)
T 3b9p_A 110 RHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLP 189 (297)
T ss_dssp HHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCC
T ss_pred HHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCc
Confidence 2346789999999432 1112222222 111 12345566666532110 0123356778888
Q ss_pred ChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch-HHHHHHh
Q 020206 140 VHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI-ALKILGR 185 (329)
Q Consensus 140 ~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 185 (329)
+.++-..++......... ....+.+..+++.+.|++- .|..++.
T Consensus 190 ~~~~r~~il~~~~~~~~~--~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 190 DEQTRELLLNRLLQKQGS--PLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp CHHHHHHHHHHHHGGGSC--CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 888888888766522111 1224568889999999886 5655543
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.42 E-value=7.7e-06 Score=70.48 Aligned_cols=151 Identities=13% Similarity=0.109 Sum_probs=83.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+.+.|+|++|+|||+||+.++...... .+.+. ..++.. ...... .......+.....
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~---~i~v~----------~~~l~~----~~~g~~-----~~~~~~~f~~a~~ 106 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQAN---FISIK----------GPELLT----MWFGES-----EANVREIFDKARQ 106 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCE---EEEEC----------HHHHHH----HHHTTC-----TTHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCC---EEEEE----------hHHHHh----hhcCch-----HHHHHHHHHHHHh
Confidence 3568999999999999999999876421 12221 112221 111111 1112223333334
Q ss_pred CceEEEEEecCCChh----------------hHHHHhcccCCC--CCCcEEEEEeCchhHH-Hh-c---CCCeEEEecCC
Q 020206 83 RKKVLIVFDDVNHPR----------------QIEFLIGNLDWF--ASGSRILITARDKQAL-IN-C---GVNKIYQIKEL 139 (329)
Q Consensus 83 ~~~~LlvlDdv~~~~----------------~~~~l~~~l~~~--~~~~~ilitsr~~~~~-~~-~---~~~~~~~l~~l 139 (329)
..+.+|++|+++... ....++..+... ..+..||.||...... .. . .....+.++..
T Consensus 107 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p 186 (301)
T 3cf0_A 107 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 186 (301)
T ss_dssp TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCc
Confidence 567899999995321 123343333211 2344566666544211 11 1 24467889999
Q ss_pred ChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCchH
Q 020206 140 VHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPIA 179 (329)
Q Consensus 140 ~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pla 179 (329)
+.++-.+++........ ..... ...++..+.|+|-+
T Consensus 187 ~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 187 DEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp CHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 99998888877763322 11112 55677778888764
No 47
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=6.8e-06 Score=73.90 Aligned_cols=148 Identities=15% Similarity=0.165 Sum_probs=81.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCC--hHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGK--LADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
++=|.++||||+|||.||+.++...... ++.....++..+.. ....+ ...+...
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~----~~~v~~s~l~sk~~Gese~~i--------------------r~~F~~A 270 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGAN----FIFSPASGIVDKYIGESARII--------------------REMFAYA 270 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGTCCSSSSHHHHHH--------------------HHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehhhhccccchHHHHHH--------------------HHHHHHH
Confidence 4668999999999999999999987532 22222222211110 11111 1122223
Q ss_pred hcCceEEEEEecCCCh----------------hhHHHHhcccCC--CCCCcEEEEEeCchhHHHh-c----CCCeEEEec
Q 020206 81 LTRKKVLIVFDDVNHP----------------RQIEFLIGNLDW--FASGSRILITARDKQALIN-C----GVNKIYQIK 137 (329)
Q Consensus 81 ~~~~~~LlvlDdv~~~----------------~~~~~l~~~l~~--~~~~~~ilitsr~~~~~~~-~----~~~~~~~l~ 137 (329)
-...+++|++|+++.. ..+..++..+.. ...+..||.||.....+.. + .....+.++
T Consensus 271 ~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~ 350 (437)
T 4b4t_L 271 KEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP 350 (437)
T ss_dssp HHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCC
T ss_pred HhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecC
Confidence 3457899999999421 012334333321 1234456666654422211 1 133567788
Q ss_pred CCChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCch
Q 020206 138 ELVHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPI 178 (329)
Q Consensus 138 ~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl 178 (329)
..+.++-.++|..+...-. ..+.+ +..+++.+.|+.-
T Consensus 351 lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~sG 388 (437)
T 4b4t_L 351 LPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFNG 388 (437)
T ss_dssp CCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCCH
T ss_pred CcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCCH
Confidence 8888888888876653322 12222 6778888887543
No 48
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=2.7e-06 Score=73.33 Aligned_cols=128 Identities=9% Similarity=0.023 Sum_probs=81.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh---cCCCceEEEeccchhhh-cCChHHHHHHHHHHHhcCCCCCCCCCcchHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS---RRFEGSYFAHNVREAEE-TGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS 78 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 78 (329)
.+...++||+|+|||++|..+++.+. ..++...++. ... ...+.+ ++.+...+...+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~id~-ir~li~~~~~~p-------------- 78 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGIDD-IRTIKDFLNYSP-------------- 78 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCHHH-HHHHHHHHTSCC--------------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCHHH-HHHHHHHHhhcc--------------
Confidence 46889999999999999999988632 2234444443 111 122222 233433332211
Q ss_pred hhhcCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHhcCCCeEEEecCCChhhhHHHHhhhh
Q 020206 79 KRLTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALINCGVNKIYQIKELVHVDALKLLNQCA 152 (329)
Q Consensus 79 ~~~~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~ 152 (329)
..+++-++|+|+++ +.+....++..+...++...+|++|.+. .+....... .+++++++.++..+++.+..
T Consensus 79 --~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 79 --ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp --SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred --ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 12345689999995 3455666766666556677777766544 333333344 89999999999999998876
No 49
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=2.3e-05 Score=70.49 Aligned_cols=147 Identities=15% Similarity=0.151 Sum_probs=80.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcC--ChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG--KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
++=|.++||+|+|||.||+.++......| +......+..+. .....++ ..+...
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~vGesek~ir--------------------~lF~~A 298 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYVGEGARMVR--------------------ELFEMA 298 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSSSHHHHHHH--------------------HHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccCCHHHHHHH--------------------HHHHHH
Confidence 46689999999999999999999875432 222122221110 1111111 122223
Q ss_pred hcCceEEEEEecCCCh----------------hhHHHHhcccCCC-C-CCcEEEEEeCchh-----HHHhcCCCeEEEec
Q 020206 81 LTRKKVLIVFDDVNHP----------------RQIEFLIGNLDWF-A-SGSRILITARDKQ-----ALINCGVNKIYQIK 137 (329)
Q Consensus 81 ~~~~~~LlvlDdv~~~----------------~~~~~l~~~l~~~-~-~~~~ilitsr~~~-----~~~~~~~~~~~~l~ 137 (329)
....+++|++|+++.. ..+..++..+... . .+..+|.||.... ..+..+....+.++
T Consensus 299 r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~ 378 (467)
T 4b4t_H 299 RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFS 378 (467)
T ss_dssp HHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCC
T ss_pred HhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeC
Confidence 3457899999999421 0122233322211 2 2334455554331 11122455688888
Q ss_pred CCChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc
Q 020206 138 ELVHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP 177 (329)
Q Consensus 138 ~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 177 (329)
..+.++-.++|+.....-. ..+.. ...|++.|.|.-
T Consensus 379 lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 379 LPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 8888888888876663322 11112 677888888864
No 50
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.34 E-value=1.4e-06 Score=70.41 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
+.+.|+|++|+|||+||+.+++........++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 68999999999999999999998876555555554
No 51
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.34 E-value=1.1e-06 Score=69.71 Aligned_cols=100 Identities=23% Similarity=0.203 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh-cCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
.+.+.|+|++|+|||||++.++..+. ..-..+.++. ..++...+......... . .+.+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~----~-----~~~~~~ 98 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD----------TKDLIFRLKHLMDEGKD----T-----KFLKTV 98 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE----------HHHHHHHHHHHHHHTCC----S-----HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHhcCchH----H-----HHHHHh
Confidence 36789999999999999999999875 2222333333 23334444333322211 0 112222
Q ss_pred cCceEEEEEecCCC----hhhHHHHhcccCCC-CCCcEEEEEeCch
Q 020206 82 TRKKVLIVFDDVNH----PRQIEFLIGNLDWF-ASGSRILITARDK 122 (329)
Q Consensus 82 ~~~~~LlvlDdv~~----~~~~~~l~~~l~~~-~~~~~ilitsr~~ 122 (329)
. ++-+|||||+.. ......+...+... ..+..+|+||...
T Consensus 99 ~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 99 L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 2 345899999952 11222222222111 2466788888754
No 52
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1e-05 Score=72.59 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
++=|.++||||+|||.||+.+|.....
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 455899999999999999999998753
No 53
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=7.6e-06 Score=73.53 Aligned_cols=147 Identities=14% Similarity=0.155 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcC--ChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG--KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
++=|.++||||+|||.||+.++...... ++......+..+. .....++.+ +...
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~~~vGese~~ir~l--------------------F~~A 270 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQMYIGEGAKLVRDA--------------------FALA 270 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCSSCSSHHHHHHHHH--------------------HHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhhcccchHHHHHHHH--------------------HHHH
Confidence 4668999999999999999999987542 2222222221110 111111111 2222
Q ss_pred hcCceEEEEEecCCCh------------h----hHHHHhcccCCCC--CCcEEEEEeCchhHHH-hc----CCCeEEEec
Q 020206 81 LTRKKVLIVFDDVNHP------------R----QIEFLIGNLDWFA--SGSRILITARDKQALI-NC----GVNKIYQIK 137 (329)
Q Consensus 81 ~~~~~~LlvlDdv~~~------------~----~~~~l~~~l~~~~--~~~~ilitsr~~~~~~-~~----~~~~~~~l~ 137 (329)
-...+++|++|+++.. . .+..++..+.... .+..||.||.....+. .+ +....+.++
T Consensus 271 ~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~ 350 (434)
T 4b4t_M 271 KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFP 350 (434)
T ss_dssp HHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECC
T ss_pred HhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeC
Confidence 2346899999998310 0 1233444433222 2334555655442221 11 234577888
Q ss_pred CCChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc
Q 020206 138 ELVHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP 177 (329)
Q Consensus 138 ~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 177 (329)
..+.++-.++|+.....-. ..+.. +..|++.+.|+-
T Consensus 351 lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 351 LPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 8888888888876552211 12212 677888888754
No 54
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.29 E-value=3.8e-06 Score=72.08 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.++.+.|+||+|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999999874
No 55
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.5e-05 Score=71.05 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=78.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcC--ChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG--KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 80 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 80 (329)
++=|.++||+|+|||.||+.++......| +.....++..+. .....++.+ +...
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~vGesek~ir~l--------------------F~~A 271 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKYLGDGPRLCRQI--------------------FKVA 271 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSSSSHHHHHHHHH--------------------HHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhccCchHHHHHHHH--------------------HHHH
Confidence 35689999999999999999999875432 222222221111 111111111 2222
Q ss_pred hcCceEEEEEecCCCh----------------hhHHHHhcccCC--CCCCcEEEEEeCchhHHHh-c----CCCeEEEec
Q 020206 81 LTRKKVLIVFDDVNHP----------------RQIEFLIGNLDW--FASGSRILITARDKQALIN-C----GVNKIYQIK 137 (329)
Q Consensus 81 ~~~~~~LlvlDdv~~~----------------~~~~~l~~~l~~--~~~~~~ilitsr~~~~~~~-~----~~~~~~~l~ 137 (329)
-...+++|++|+++.. ..+..++..+.. ...+..||.||.....+.. + .....+.++
T Consensus 272 r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~ 351 (437)
T 4b4t_I 272 GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFE 351 (437)
T ss_dssp HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCC
T ss_pred HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcC
Confidence 3356899999998421 112233332221 1223445556654432221 1 223467777
Q ss_pred CCChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc
Q 020206 138 ELVHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP 177 (329)
Q Consensus 138 ~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 177 (329)
..+.++-.++|......-. ..+.. ++.|++.+.|+-
T Consensus 352 lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 352 NPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 7888888888876663322 12222 677888888764
No 56
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.26 E-value=6.4e-06 Score=71.06 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+.+.|+|++|+|||++|+.+++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998874
No 57
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.25 E-value=6.2e-06 Score=65.28 Aligned_cols=27 Identities=37% Similarity=0.368 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
.+.+.|+|++|+|||+||+.+++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999998754
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.23 E-value=1.2e-05 Score=73.87 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+-|.|+|++|+|||++|+.+++... ..++..+........ ....... ....+.....+
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~~----~~fv~vn~~~l~~~~-~g~~~~~-----------------~~~~f~~A~~~ 296 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIMSKL-AGESESN-----------------LRKAFEEAEKN 296 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCS----SEEEEEEHHHHHTSC-TTHHHHH-----------------HHHHHHHHHHT
T ss_pred CcEEEECcCCCCHHHHHHHHHHHhC----CCEEEEEchHhhhhh-cchhHHH-----------------HHHHHHHHHhc
Confidence 4689999999999999999988753 222222221111110 0000000 12223333445
Q ss_pred ceEEEEEecCCCh-------------hhHHHHhcccCC--CCCCcEEEEEeCchhH-HHh----cCCCeEEEecCCChhh
Q 020206 84 KKVLIVFDDVNHP-------------RQIEFLIGNLDW--FASGSRILITARDKQA-LIN----CGVNKIYQIKELVHVD 143 (329)
Q Consensus 84 ~~~LlvlDdv~~~-------------~~~~~l~~~l~~--~~~~~~ilitsr~~~~-~~~----~~~~~~~~l~~l~~~e 143 (329)
.+.+|+||+++.. .....++..+.. ...+..+|.||..... ... ......+.++..+.++
T Consensus 297 ~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHH
Confidence 6789999998211 112333333221 1224455556654421 111 1344578899999999
Q ss_pred hHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCC-chHHHHH
Q 020206 144 ALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGV-PIALKIL 183 (329)
Q Consensus 144 ~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~-Plal~~~ 183 (329)
-.+++..+..... ..... +..++..+.|+ +..|..+
T Consensus 377 R~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 377 RLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp HHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 9999987763222 11111 56677777775 4444444
No 59
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.21 E-value=3.3e-05 Score=70.44 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+-|.|+|++|+|||+||+.++......| +.+. ..+...... ..- . ......+......
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~~-g~~-~----------------~~~r~lf~~A~~~ 107 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELFV-GVG-A----------------ARVRDLFAQAKAH 107 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCCT-THH-H----------------HHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHHh-ccc-H----------------HHHHHHHHHHHhc
Confidence 4588999999999999999998764321 1222 111111100 000 0 0011223333445
Q ss_pred ceEEEEEecCCCh----------------hhHHHHhcccCC--CCCCcEEEEEeCchhHHH-h----cCCCeEEEecCCC
Q 020206 84 KKVLIVFDDVNHP----------------RQIEFLIGNLDW--FASGSRILITARDKQALI-N----CGVNKIYQIKELV 140 (329)
Q Consensus 84 ~~~LlvlDdv~~~----------------~~~~~l~~~l~~--~~~~~~ilitsr~~~~~~-~----~~~~~~~~l~~l~ 140 (329)
.+++|+||+++.. ..+..++..+.. ...+..||.||....... . ......+.++..+
T Consensus 108 ~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd 187 (476)
T 2ce7_A 108 APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187 (476)
T ss_dssp CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCC
Confidence 7899999999431 123333332211 123445666665543221 1 1234578888888
Q ss_pred hhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc-hHHHHH
Q 020206 141 HVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP-IALKIL 183 (329)
Q Consensus 141 ~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P-lal~~~ 183 (329)
.++-.+++........ .++.. ...++..+.|+. .-|..+
T Consensus 188 ~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~sgadL~~l 228 (476)
T 2ce7_A 188 MLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFVGADLENL 228 (476)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCcHHHHHHH
Confidence 8877788876653221 11111 566888899988 334443
No 60
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.21 E-value=6.1e-06 Score=69.36 Aligned_cols=155 Identities=13% Similarity=0.058 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+-+.|+|++|+|||+||+.++...... .+.+. ........ .. .........+......
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~---~~~i~-~~~~~~~~-----------------~~-~~~~~~~~~~~~a~~~ 103 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTIS-GSDFVEMF-----------------VG-VGASRVRDMFEQAKKA 103 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCC---EEEEC-SCSSTTSC-----------------CC-CCHHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCC---EEEEe-HHHHHHHh-----------------hh-hhHHHHHHHHHHHHHc
Confidence 458899999999999999999876432 12222 11111100 00 0000011222222334
Q ss_pred ceEEEEEecCCCh----------------hhHHHHhcccCCC--CCCcEEEEEeCchhHH-Hhc----CCCeEEEecCCC
Q 020206 84 KKVLIVFDDVNHP----------------RQIEFLIGNLDWF--ASGSRILITARDKQAL-INC----GVNKIYQIKELV 140 (329)
Q Consensus 84 ~~~LlvlDdv~~~----------------~~~~~l~~~l~~~--~~~~~ilitsr~~~~~-~~~----~~~~~~~l~~l~ 140 (329)
.+.++++|+++.. ..+..++..+... ..+..+|.||...... ... .....+.++..+
T Consensus 104 ~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~ 183 (257)
T 1lv7_A 104 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 183 (257)
T ss_dssp CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCC
T ss_pred CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCC
Confidence 5789999998211 1223333332211 2344556666544211 111 234577788888
Q ss_pred hhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcC-CchHHHHHH
Q 020206 141 HVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQG-VPIALKILG 184 (329)
Q Consensus 141 ~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g-~Plal~~~~ 184 (329)
.++-.+++........ .++.. ...++..+.| ++.-|..+.
T Consensus 184 ~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~l~ 225 (257)
T 1lv7_A 184 VRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLANLV 225 (257)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHHHH
Confidence 8887888876652211 11111 4556777777 776666543
No 61
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.19 E-value=4.1e-05 Score=66.07 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
..+.|+|++|+|||++|+.+++.........+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 4789999999999999999999875543333333
No 62
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.04 E-value=1.2e-05 Score=61.29 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.-|.|+|++|+|||++|+.+++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 347899999999999999998764
No 63
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.03 E-value=3.6e-06 Score=64.53 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..+.|+|++|+|||+|++.++..+...-...+++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 57899999999999999999997765322244544
No 64
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.99 E-value=3.3e-05 Score=70.71 Aligned_cols=146 Identities=13% Similarity=0.083 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ 77 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l 77 (329)
+-+.|+|++|+|||++|+.+++.+.... ...++..+.. ..... .........+
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----------------~~~~g-----~~e~~~~~~~ 260 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----------------TKYRG-----EFEDRLKKVM 260 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------------------------CTTHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------------ccccc-----hHHHHHHHHH
Confidence 3568999999999999999999875432 1122221111 00000 0011112222
Q ss_pred HhhhcCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhH---HH----hcCCCeEEEecCCChhhhHHHHhh
Q 020206 78 SKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQA---LI----NCGVNKIYQIKELVHVDALKLLNQ 150 (329)
Q Consensus 78 ~~~~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~---~~----~~~~~~~~~l~~l~~~e~~~ll~~ 150 (329)
.......+.+|++| ...+....+...+. .....+|.+|..... .. .......+.+++++.++..+++..
T Consensus 261 ~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~ 336 (468)
T 3pxg_A 261 DEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQG 336 (468)
T ss_dssp HHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHH
Confidence 22333467899999 22222333333332 234455555543321 00 012335789999999999999987
Q ss_pred hhcCC--CCCCCchHHHHHHHHHHhc
Q 020206 151 CAFGR--DHPDASYIELTHEAIKYAQ 174 (329)
Q Consensus 151 ~~~~~--~~~~~~~~~~~~~i~~~~~ 174 (329)
....- .......++....++..+.
T Consensus 337 ~~~~~~~~~~~~i~~~al~~l~~~s~ 362 (468)
T 3pxg_A 337 LRDRYEAHHRVSITDDAIEAAVKLSD 362 (468)
T ss_dssp TTTTSGGGSSCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 65220 0112233455555555543
No 65
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.99 E-value=0.00029 Score=64.25 Aligned_cols=96 Identities=9% Similarity=-0.039 Sum_probs=60.3
Q ss_pred EEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEe---------Cc----h-h-HHHhcCCCeEEEecCCChhhhHHHH
Q 020206 86 VLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITA---------RD----K-Q-ALINCGVNKIYQIKELVHVDALKLL 148 (329)
Q Consensus 86 ~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilits---------r~----~-~-~~~~~~~~~~~~l~~l~~~e~~~ll 148 (329)
-++++|+++ +.+....++..+...... .+|+.| .+ . . ..........+.+++++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 389999995 456677777776654444 344344 21 1 1 1112234456799999999999999
Q ss_pred hhhhcCCCCCCCchHHHHHHHHHHh-cCCchHHHHHH
Q 020206 149 NQCAFGRDHPDASYIELTHEAIKYA-QGVPIALKILG 184 (329)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plal~~~~ 184 (329)
..++.... ....++.+..|+..+ .|.|.....+.
T Consensus 376 ~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 376 KIRAQTEG--INISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHHHHH
Confidence 87762111 113456678888888 89887655444
No 66
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.99 E-value=3.6e-05 Score=71.75 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
.+.+.|+||+|+|||+||+.++.....
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 357899999999999999999988743
No 67
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.97 E-value=0.00029 Score=60.59 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.-|.|+|++|+|||++|+.+++...
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEECCCCchHHHHHHHHHHhCc
Confidence 3578999999999999999988653
No 68
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.93 E-value=9.2e-06 Score=68.67 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
+-+.|+|++|+|||+||+.+++....
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34789999999999999999987653
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.93 E-value=3.9e-05 Score=74.67 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=68.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCc
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRK 84 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (329)
.+.++|++|+|||++|+.+++.........+.+. +.......... .......+.. ..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-------------------~~~l~~~~~~---~~ 579 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-------------------GGQLTEKVRR---KP 579 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC----------------------CHHHHHH---CS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc-------------------cchhhHHHHh---CC
Confidence 5899999999999999999998744333333333 22222211111 0011122221 23
Q ss_pred eEEEEEecCCC--hhhHHHHhcccCC-----------CCCCcEEEEEeCchh-----H----HH------hcCCCeEEEe
Q 020206 85 KVLIVFDDVNH--PRQIEFLIGNLDW-----------FASGSRILITARDKQ-----A----LI------NCGVNKIYQI 136 (329)
Q Consensus 85 ~~LlvlDdv~~--~~~~~~l~~~l~~-----------~~~~~~ilitsr~~~-----~----~~------~~~~~~~~~l 136 (329)
..+|+||+++. .+....++..+.. ...+..+|+||.... . .. ..+....+.+
T Consensus 580 ~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~ 659 (758)
T 3pxi_A 580 YSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVF 659 (758)
T ss_dssp SSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEEC
T ss_pred CeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEec
Confidence 34899999953 3434444433321 123557788887310 0 00 0123368899
Q ss_pred cCCChhhhHHHHhhhh
Q 020206 137 KELVHVDALKLLNQCA 152 (329)
Q Consensus 137 ~~l~~~e~~~ll~~~~ 152 (329)
++++.++...++....
T Consensus 660 ~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 660 HSLEKKHLTEIVSLMS 675 (758)
T ss_dssp C--CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999888887654
No 70
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.92 E-value=0.00021 Score=60.58 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=76.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCce
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK 85 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (329)
+.|+|++|+|||||++.++..... ..+.+. ........ ....... ....+.......+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~-~~~~~~~-----------------i~~~~~~~~~~~~ 133 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF-VGVGAAR-----------------VRDLFETAKRHAP 133 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHST-TTHHHHH-----------------HHHHHHHHHTSCS
T ss_pred EEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHHHHH-hhHHHHH-----------------HHHHHHHHHhcCC
Confidence 899999999999999999987642 222322 11111000 0000000 0111222222356
Q ss_pred EEEEEecCCCh----------------hhHHHHhcccCCCC-CCc-EEEEEeCchhHH-----HhcCCCeEEEecCCChh
Q 020206 86 VLIVFDDVNHP----------------RQIEFLIGNLDWFA-SGS-RILITARDKQAL-----INCGVNKIYQIKELVHV 142 (329)
Q Consensus 86 ~LlvlDdv~~~----------------~~~~~l~~~l~~~~-~~~-~ilitsr~~~~~-----~~~~~~~~~~l~~l~~~ 142 (329)
.++++||++.. ..+..++..+.... +.. .++.++..+... ........+.++..+.+
T Consensus 134 ~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~ 213 (278)
T 1iy2_A 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 213 (278)
T ss_dssp EEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHH
T ss_pred cEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHH
Confidence 79999998311 11233333332211 222 333444443221 11134457888888988
Q ss_pred hhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc-hHHHHH
Q 020206 143 DALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP-IALKIL 183 (329)
Q Consensus 143 e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P-lal~~~ 183 (329)
+-.+++........ ..+.. ...++..+.|+. ..|..+
T Consensus 214 ~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~~~dl~~l 252 (278)
T 1iy2_A 214 GREQILRIHARGKPLAEDVD----LALLAKRTPGFVGADLENL 252 (278)
T ss_dssp HHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHccCCCCcccC----HHHHHHHcCCCCHHHHHHH
Confidence 88888876653221 11111 556777888776 344433
No 71
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.90 E-value=0.0004 Score=57.95 Aligned_cols=147 Identities=15% Similarity=0.103 Sum_probs=73.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCc
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRK 84 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (329)
-+.|+|++|+|||||++.++..... ..+.+. ........ ....... ....+.......
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~-~~~~~~~-----------------i~~~~~~~~~~~ 108 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF-VGVGAAR-----------------VRDLFETAKRHA 108 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSC-TTHHHHH-----------------HHHHHHHHTTSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHHHHHH-hhHHHHH-----------------HHHHHHHHHhcC
Confidence 3899999999999999999987642 222222 11111000 0000000 111122212235
Q ss_pred eEEEEEecCCCh----------------hhHHHHhcccCCC-CCCcEE-EEEeCchhHHHh-----cCCCeEEEecCCCh
Q 020206 85 KVLIVFDDVNHP----------------RQIEFLIGNLDWF-ASGSRI-LITARDKQALIN-----CGVNKIYQIKELVH 141 (329)
Q Consensus 85 ~~LlvlDdv~~~----------------~~~~~l~~~l~~~-~~~~~i-litsr~~~~~~~-----~~~~~~~~l~~l~~ 141 (329)
+.++++||++.. .....++..+... .+...+ +.++..+..... ......+.++..+.
T Consensus 109 ~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~ 188 (254)
T 1ixz_A 109 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 188 (254)
T ss_dssp SEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCH
T ss_pred CeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCH
Confidence 689999998311 1122333332211 122233 345544432211 13446788888888
Q ss_pred hhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc
Q 020206 142 VDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP 177 (329)
Q Consensus 142 ~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 177 (329)
++-.+++........ ..+.. ...++..+.|+.
T Consensus 189 ~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 189 KGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred HHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 888888876652221 11111 556777777765
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.90 E-value=0.00012 Score=70.74 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=80.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
++-|.++||+|+|||+||+.++..... .++..+..+...+. ..+.-. .....+.....
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~----~~~~v~~~~l~sk~-~gese~-----------------~lr~lF~~A~~ 295 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKL-AGESES-----------------NLRKAFEEAEK 295 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTC----EEEEEEHHHHHSSC-TTHHHH-----------------HHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC----eEEEEEhHHhhccc-chHHHH-----------------HHHHHHHHHHH
Confidence 467899999999999999999876542 22322221111100 000000 02222333344
Q ss_pred CceEEEEEecCCCh-------------hhHHHHhcccCCCC--CCcEEEEEeCchhHH-Hh----cCCCeEEEecCCChh
Q 020206 83 RKKVLIVFDDVNHP-------------RQIEFLIGNLDWFA--SGSRILITARDKQAL-IN----CGVNKIYQIKELVHV 142 (329)
Q Consensus 83 ~~~~LlvlDdv~~~-------------~~~~~l~~~l~~~~--~~~~ilitsr~~~~~-~~----~~~~~~~~l~~l~~~ 142 (329)
..+++|+||+++.. .....++..+.... .+..||.||...... .. ......+.++..+.+
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~ 375 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHH
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHH
Confidence 67899999998321 11223332222111 233444455443211 11 134467888888888
Q ss_pred hhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCchH
Q 020206 143 DALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPIA 179 (329)
Q Consensus 143 e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pla 179 (329)
+=.++++....... ..+.. +..|+..+.|+.-+
T Consensus 376 ~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 376 GRLEILQIHTKNMKLADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp HHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCHH
T ss_pred HHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCHH
Confidence 88888876653221 11222 77788898887543
No 73
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.90 E-value=1.2e-05 Score=69.51 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh-cCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~ 38 (329)
.+.+.|+|++|+|||+||..+++... .....+.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46789999999999999999999876 5544455554
No 74
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.89 E-value=5.9e-05 Score=67.06 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+.+.++|++|+|||++|+.+++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998773
No 75
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.88 E-value=5.4e-05 Score=63.80 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.-|.|+|++|+|||++|+.+++...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4578999999999999999988654
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.87 E-value=0.00026 Score=59.92 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=65.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCce
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK 85 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (329)
+.|+|++|+|||||++.++..... ..+.+. ....... ...+....+ ...+.......+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~~~-~~~~~~~~i-----------------~~vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELLNM-YVGESERAV-----------------RQVFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTCSS-TTHHHHHHH-----------------HHHHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHHhh-hhhHHHHHH-----------------HHHHHHHHhcCC
Confidence 899999999999999999987543 223332 1111111 111111111 011111112357
Q ss_pred EEEEEecCCCh-------------hhHHHHhcccCCC-CC-CcEEEEEeCchhHHH-----hcCCCeEEEecCCChhhhH
Q 020206 86 VLIVFDDVNHP-------------RQIEFLIGNLDWF-AS-GSRILITARDKQALI-----NCGVNKIYQIKELVHVDAL 145 (329)
Q Consensus 86 ~LlvlDdv~~~-------------~~~~~l~~~l~~~-~~-~~~ilitsr~~~~~~-----~~~~~~~~~l~~l~~~e~~ 145 (329)
+++++|+++.. .....++..+... .+ ...++.+|..+.... .......+.++..+.++-.
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 89999998431 1122222222211 12 233444555443221 1245567889999998888
Q ss_pred HHHhhhh
Q 020206 146 KLLNQCA 152 (329)
Q Consensus 146 ~ll~~~~ 152 (329)
++++...
T Consensus 185 ~il~~~~ 191 (274)
T 2x8a_A 185 AILKTIT 191 (274)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8887765
No 77
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.83 E-value=0.00065 Score=59.44 Aligned_cols=157 Identities=7% Similarity=-0.075 Sum_probs=99.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh-cCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
.++..++|+.|.||++.+..+++.+. ..+.....+. ......+.++...+... -+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~--------------------pl 73 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS----IDPNTDWNAIFSLCQAM--------------------SL 73 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE----CCTTCCHHHHHHHHHHH--------------------HH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE----ecCCCCHHHHHHHhcCc--------------------CC
Confidence 57899999999999999999988754 3332211111 11124444444332111 12
Q ss_pred cCceEEEEEecCCC---hhhHHHHhcccCCCCCCcEEEEEeCc-------hhHHHh-cCCCeEEEecCCChhhhHHHHhh
Q 020206 82 TRKKVLIVFDDVNH---PRQIEFLIGNLDWFASGSRILITARD-------KQALIN-CGVNKIYQIKELVHVDALKLLNQ 150 (329)
Q Consensus 82 ~~~~~LlvlDdv~~---~~~~~~l~~~l~~~~~~~~ilitsr~-------~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~ 150 (329)
-+.+-++|+|+++. .+....+...+...+++..+|+++.. ..+... ......++..+++.++...++..
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 23455889999854 34566666666555567777766543 122333 34557899999999999999988
Q ss_pred hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206 151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 185 (329)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 185 (329)
.+.... -...++.+..|++.++|++..+.....
T Consensus 154 ~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~ele 186 (343)
T 1jr3_D 154 RAKQLN--LELDDAANQVLCYCYEGNLLALAQALE 186 (343)
T ss_dssp HHHHTT--CEECHHHHHHHHHSSTTCHHHHHHHHH
T ss_pred HHHHcC--CCCCHHHHHHHHHHhchHHHHHHHHHH
Confidence 763222 124457789999999999988876443
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.80 E-value=5.8e-05 Score=74.41 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhh----cCChHHHHHHHHHHHhcCCCCCCCCCcc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEE----TGKLADLRKELLSTLLNDGNMNKFPNIG 73 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 73 (329)
+-+.|+|++|+|||++|+.+++.+.... ...++..+...... .......+
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l-------------------- 251 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERL-------------------- 251 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHH--------------------
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHH--------------------
Confidence 4578999999999999999999874321 22233322211100 00011111
Q ss_pred hHHHHhhhc-CceEEEEEecCCChh---------h-HHHHhcccCCCCCCcEEEEEeCchhHH-----Hh-cCCCeEEEe
Q 020206 74 LNFQSKRLT-RKKVLIVFDDVNHPR---------Q-IEFLIGNLDWFASGSRILITARDKQAL-----IN-CGVNKIYQI 136 (329)
Q Consensus 74 ~~~l~~~~~-~~~~LlvlDdv~~~~---------~-~~~l~~~l~~~~~~~~ilitsr~~~~~-----~~-~~~~~~~~l 136 (329)
...+..... +++.+|++|+++... . ...+...+. ..+..+|.+|...... .. ......+.+
T Consensus 252 ~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l 329 (854)
T 1qvr_A 252 KAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPALERRFQPVYV 329 (854)
T ss_dssp HHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEE
T ss_pred HHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccCHHHHhCCceEEe
Confidence 111111112 367899999995421 1 111222221 2344455555443221 11 122345889
Q ss_pred cCCChhhhHHHHhhhhcC--CCCCCCchHHHHHHHHHHhcC
Q 020206 137 KELVHVDALKLLNQCAFG--RDHPDASYIELTHEAIKYAQG 175 (329)
Q Consensus 137 ~~l~~~e~~~ll~~~~~~--~~~~~~~~~~~~~~i~~~~~g 175 (329)
++++.++..++++..... ........++.+..+++.+.|
T Consensus 330 ~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r 370 (854)
T 1qvr_A 330 DEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR 370 (854)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhh
Confidence 999999999999754310 011112234556666665543
No 79
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.78 E-value=0.00028 Score=64.74 Aligned_cols=152 Identities=16% Similarity=0.109 Sum_probs=77.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh-cC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL-TR 83 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 83 (329)
-+.|+|++|+|||+|++.++..... ..+.+. ...+.... ....... ...+.+.. ..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~---~~i~i~-g~~~~~~~-~g~~~~~------------------v~~lfq~a~~~ 122 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF-VGVGAAR------------------VRDLFETAKRH 122 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTC---CEEEEE-GGGGTSSC-TTHHHHH------------------HHHHTTTSSSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC---CEEEEe-hhHHHHhh-hhhHHHH------------------HHHHHHHHHhc
Confidence 4899999999999999999987642 222222 21111110 0000000 00111111 12
Q ss_pred ceEEEEEecCCCh----------------hhHHHHhcccCCCC-C-CcEEEEEeCchhHHHh-----cCCCeEEEecCCC
Q 020206 84 KKVLIVFDDVNHP----------------RQIEFLIGNLDWFA-S-GSRILITARDKQALIN-----CGVNKIYQIKELV 140 (329)
Q Consensus 84 ~~~LlvlDdv~~~----------------~~~~~l~~~l~~~~-~-~~~ilitsr~~~~~~~-----~~~~~~~~l~~l~ 140 (329)
.+.++++|+++.. ..+..++..+.... + ...++.+|..+..+.. ......+.++..+
T Consensus 123 ~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd 202 (499)
T 2dhr_A 123 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 202 (499)
T ss_dssp SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCC
T ss_pred CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCC
Confidence 4679999998321 12333443332211 2 2334445544432211 1234578888888
Q ss_pred hhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc-hHHHHH
Q 020206 141 HVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP-IALKIL 183 (329)
Q Consensus 141 ~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P-lal~~~ 183 (329)
.++-.+++........ .++.. ...++..+.|+. .-|..+
T Consensus 203 ~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~gadL~~l 243 (499)
T 2dhr_A 203 VKGREQILRIHARGKPLAEDVD----LALLAKRTPGFVGADLENL 243 (499)
T ss_dssp HHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCCHHHHHHH
Confidence 8888888876652211 11111 566788888887 444433
No 80
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.75 E-value=0.00013 Score=71.06 Aligned_cols=124 Identities=13% Similarity=0.068 Sum_probs=64.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ 77 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l 77 (329)
+-+.|+|++|+|||++|+.+++.+.... ...++..+. +..... .........+
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------------g~~~~G-~~e~~l~~~~ 260 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------------GTKYRG-EFEDRLKKVM 260 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------------------------CTTHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------------------cccccc-hHHHHHHHHH
Confidence 4578999999999999999999874321 112221111 000000 1111122233
Q ss_pred HhhhcCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHH--h-----cCCCeEEEecCCChhhhHHHHhh
Q 020206 78 SKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALI--N-----CGVNKIYQIKELVHVDALKLLNQ 150 (329)
Q Consensus 78 ~~~~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~--~-----~~~~~~~~l~~l~~~e~~~ll~~ 150 (329)
.......+.+|++| ...+....+...+. .....+|.+|....... . ....+.+.++.++.++..+++..
T Consensus 261 ~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~ 336 (758)
T 3pxi_A 261 DEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQG 336 (758)
T ss_dssp HHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHH
Confidence 33334567899999 22222333333332 23455666555432100 0 11335789999999999999986
Q ss_pred hh
Q 020206 151 CA 152 (329)
Q Consensus 151 ~~ 152 (329)
..
T Consensus 337 ~~ 338 (758)
T 3pxi_A 337 LR 338 (758)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.66 E-value=0.00026 Score=68.85 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=67.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC------CCceEEEeccchhhh----cCChHHHHHHHHHHHhcCCCCCCCCCcc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAHNVREAEE----TGKLADLRKELLSTLLNDGNMNKFPNIG 73 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 73 (329)
.-+.|+|++|+|||++|+.+++.+... ....++..+...... ...+...++
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~------------------- 268 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFK------------------- 268 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHH-------------------
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHH-------------------
Confidence 457899999999999999999876432 122233222111100 001111111
Q ss_pred hHHHHhhhcCceEEEEEecCCCh----------hhHHHHhcccCCCCCCcEEEEEeCchhHHHh-------cCCCeEEEe
Q 020206 74 LNFQSKRLTRKKVLIVFDDVNHP----------RQIEFLIGNLDWFASGSRILITARDKQALIN-------CGVNKIYQI 136 (329)
Q Consensus 74 ~~~l~~~~~~~~~LlvlDdv~~~----------~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~-------~~~~~~~~l 136 (329)
..+......++.+|++|+++.. .....++..+.. ..+..+|.+|........ ......+.+
T Consensus 269 -~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v 346 (758)
T 1r6b_X 269 -ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDI 346 (758)
T ss_dssp -HHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEEC
T ss_pred -HHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEc
Confidence 1122222235689999999633 223333333322 234456665554322111 112246889
Q ss_pred cCCChhhhHHHHhhhh
Q 020206 137 KELVHVDALKLLNQCA 152 (329)
Q Consensus 137 ~~l~~~e~~~ll~~~~ 152 (329)
+.++.++..+++....
T Consensus 347 ~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 347 TEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999988887654
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.60 E-value=2.7e-05 Score=59.14 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+-|.|+|++|+|||++|+.+++..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CcEEEECCCCccHHHHHHHHHHhC
Confidence 447899999999999999886643
No 83
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.60 E-value=0.00033 Score=56.97 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 1 MDTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
++.++|+|.|+||+||||.|+.+++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998876
No 84
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.57 E-value=0.00012 Score=58.07 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=60.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhc--CCCCCCCCC---------cc
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLN--DGNMNKFPN---------IG 73 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~---------~~ 73 (329)
.|.|++..|.||||.|.-.+-+...+-..+.++....+. .......++..+.-.+.. .+..-...+ ..
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 567777777999999999998876665556655433221 112222333322000000 000000000 02
Q ss_pred hHHHHhhhcCc-eEEEEEecCC-----ChhhHHHHhcccCCCCCCcEEEEEeCchh
Q 020206 74 LNFQSKRLTRK-KVLIVFDDVN-----HPRQIEFLIGNLDWFASGSRILITARDKQ 123 (329)
Q Consensus 74 ~~~l~~~~~~~-~~LlvlDdv~-----~~~~~~~l~~~l~~~~~~~~ilitsr~~~ 123 (329)
.....+.+... -=|||||++. ..-..+.++..+........+|+|+|..+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 22333344333 3499999982 22223334444443456778999999874
No 85
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.57 E-value=0.00021 Score=69.51 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.++|++|+|||++|+.+++..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 68999999999999999999987
No 86
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.53 E-value=0.00015 Score=58.52 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
+|+|.|+||+||||.|+.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
No 87
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.53 E-value=0.00016 Score=57.32 Aligned_cols=36 Identities=17% Similarity=-0.141 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
..++++++|++|+||||++.+.+.++...-..+.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 346899999999999999988888765443333333
No 88
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.50 E-value=0.00033 Score=56.96 Aligned_cols=33 Identities=15% Similarity=0.005 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|.|++|+|||||+.+++. . .-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 35789999999999999999998 2 224456655
No 89
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.47 E-value=0.00037 Score=61.52 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+.+.++|++|+|||++|+.+++...
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5689999999999999999998873
No 90
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.46 E-value=4.8e-05 Score=62.15 Aligned_cols=34 Identities=18% Similarity=-0.185 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
.+++++|++|+||||++.+++.++..+...+..+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5889999999999999999999887665555554
No 91
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.45 E-value=7.6e-05 Score=58.68 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..++|+|+|++|+||||+++.+++.+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988764
No 92
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.42 E-value=0.00029 Score=68.15 Aligned_cols=148 Identities=15% Similarity=0.191 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
+-|.++||+|+|||.+|+.++..... .++... ..++ +....... .......+...-..
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~----~f~~v~---------~~~l----~s~~vGes-----e~~vr~lF~~Ar~~ 569 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQA----NFISIK---------GPEL----LTMWFGES-----EANVREIFDKARQA 569 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTC----EEEECC---------HHHH----HTTTCSSC-----HHHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCC----ceEEec---------cchh----hccccchH-----HHHHHHHHHHHHHc
Confidence 45789999999999999999887542 222221 1111 11111110 00122223333345
Q ss_pred ceEEEEEecCCCh----------------hhHHHHhcccCCCCC-CcEEEE-EeCch-----hHHHhcCCCeEEEecCCC
Q 020206 84 KKVLIVFDDVNHP----------------RQIEFLIGNLDWFAS-GSRILI-TARDK-----QALINCGVNKIYQIKELV 140 (329)
Q Consensus 84 ~~~LlvlDdv~~~----------------~~~~~l~~~l~~~~~-~~~ili-tsr~~-----~~~~~~~~~~~~~l~~l~ 140 (329)
.+++|+||+++.. .....|+..+..... ...++| ||..+ ...+..+....+.++..+
T Consensus 570 ~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd 649 (806)
T 3cf2_A 570 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC----
T ss_pred CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcC
Confidence 6899999998321 013334433332222 223444 33322 122212345677887777
Q ss_pred hhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc
Q 020206 141 HVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP 177 (329)
Q Consensus 141 ~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 177 (329)
.++-.++|+....... ..+.+ +..|++.+.|+.
T Consensus 650 ~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g~S 683 (806)
T 3cf2_A 650 EKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFS 683 (806)
T ss_dssp -CHHHHTTTTTSSCC--CCC------------------
T ss_pred HHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCCCC
Confidence 7777777766652221 11111 566777776643
No 93
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.41 E-value=0.00092 Score=65.88 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+.|+|++|+|||++|+.+++.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 368999999999999999999987543
No 94
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.40 E-value=5.9e-05 Score=64.71 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
+++.|+|++|+|||+||.+++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 56789999999999999999886
No 95
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.36 E-value=7.1e-05 Score=59.33 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF 31 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~ 31 (329)
.|.|+|+||+|+|||||++.+.+...+.|
T Consensus 1 ~RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 37799999999999999999987754443
No 96
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.35 E-value=0.00098 Score=61.21 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.-|.|+|++|+|||+||+.+++...
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3578999999999999999988664
No 97
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.26 E-value=0.00018 Score=56.02 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
++|+|.|++|+||||+++.+++.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988764
No 98
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.23 E-value=0.00073 Score=59.15 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|+|++|+|||||+.+++......-..++|+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 368999999999999999999988765545566765
No 99
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.21 E-value=0.00022 Score=56.42 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.|+|+|++|+||||+++.+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999876
No 100
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.20 E-value=0.00061 Score=59.80 Aligned_cols=109 Identities=14% Similarity=0.095 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceE-EEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSY-FAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
.+++|+|+.|+|||||.+.++..+.......+ .+.+..+....... ....+.............+...+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~---------~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK---------CLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc---------cceeeeeeccccCCHHHHHHHHhh
Confidence 48999999999999999999887654322332 22211111000000 000000000000113456777788
Q ss_pred CceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhH
Q 020206 83 RKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQA 124 (329)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~ 124 (329)
..+=+|++|++.+.+.++.++... ..|..+++|+.....
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSA 233 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChH
Confidence 888899999998777666554442 235568888876543
No 101
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.19 E-value=0.00042 Score=55.01 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
++|+|.|++|+||||+++.+++.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 479999999999999999999987643
No 102
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.18 E-value=0.00024 Score=56.32 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
...+|+|.|++|+||||+++.+++.+..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999998764
No 103
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.15 E-value=0.00026 Score=55.59 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
+.+|+|.|++|+||||+++.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 104
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.14 E-value=0.00032 Score=55.73 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
...+|+|.|++|+||||+++.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999998876
No 105
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.13 E-value=0.00031 Score=55.89 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 1 MDTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
|.+.+|+|.|++|+||||+++.+++.+
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998875
No 106
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.12 E-value=0.00029 Score=55.46 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.|+|+|++|+||||+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998876
No 107
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.11 E-value=0.0014 Score=56.31 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
..++.|+|++|+||||++..++..+...-..+.++
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 56899999999999999999999876553344443
No 108
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.10 E-value=0.00066 Score=54.74 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=25.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRF 31 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~ 31 (329)
...+|+|.|++|+||||+++.+++.+....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 357899999999999999999999876543
No 109
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.09 E-value=0.00036 Score=55.95 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.|+|+|++|+||||+++.+++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999876
No 110
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.08 E-value=0.00067 Score=53.65 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+|+|.|++|+||||+++.++..+...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999987654
No 111
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.07 E-value=0.00039 Score=55.36 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..++|+|.|++|+||||+++.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 112
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.07 E-value=0.0013 Score=64.31 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+.|.|+|++|+|||+||+.++....
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 35689999999999999999987653
No 113
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.05 E-value=0.00068 Score=54.84 Aligned_cols=29 Identities=10% Similarity=0.144 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF 31 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~ 31 (329)
..+|+|.|++|+||||+++.+++.+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 56899999999999999999999876543
No 114
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.05 E-value=0.00034 Score=54.54 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+|+|.|++|+||||+++.+ +.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 57999999999999999998 44
No 115
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.04 E-value=0.00076 Score=54.08 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+|+|.|++|+||||+++.++..+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999876
No 116
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.04 E-value=0.00034 Score=56.18 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.++|+|+|++|+||||+++.+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998876
No 117
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.00 E-value=0.00036 Score=54.44 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+|+|+|++|+||||+++.++..+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988753
No 118
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.00 E-value=0.0028 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.146 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
++.|+|++|+|||++|.......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999998876543
No 119
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.00 E-value=0.00035 Score=55.38 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF 31 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~ 31 (329)
.++++|.||.|+|||||++.++..+...+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 36799999999999999999998765433
No 120
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.99 E-value=0.0008 Score=52.27 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+++.|.|++|+|||||+..++..+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999987654
No 121
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.99 E-value=0.00048 Score=57.57 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
++++|.|++|+|||||++.+++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5789999999999999999998763
No 122
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.98 E-value=0.00044 Score=54.52 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.++++|+||+|+|||||++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988654
No 123
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.97 E-value=0.0035 Score=58.73 Aligned_cols=35 Identities=14% Similarity=-0.041 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
.++++|+|++|+||||++..++..+......+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 47899999999999999999998776554444443
No 124
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.95 E-value=0.00052 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999765
No 125
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.95 E-value=0.0021 Score=56.17 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc------CCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~------~~~~~~~~~ 38 (329)
..++.|+|++|+|||+|+.+++..... .-..++|+.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 368899999999999999999987533 234566665
No 126
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.95 E-value=0.00047 Score=53.99 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+.|+|.|++|+||||+++.+++.+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 127
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.94 E-value=0.00045 Score=54.53 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
++|+|+|++|+||||+++.+++.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5699999999999999999988763
No 128
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.94 E-value=0.00057 Score=54.56 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..++++|.||+|+|||||++.++..+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987754
No 129
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.94 E-value=0.00055 Score=55.32 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..++++|.||+|+|||||++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999987654
No 130
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.93 E-value=0.00063 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+.|+|+|++|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999886
No 131
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.93 E-value=0.00064 Score=53.67 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
...|+|.|++|+||||+++.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998875
No 132
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.92 E-value=0.0014 Score=52.11 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
.|+|.|++|+||||+++.+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999987543
No 133
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.92 E-value=0.00059 Score=54.47 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.++|+|.|++|+||||+++.+++.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 134
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.91 E-value=0.00076 Score=56.28 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+++|.|+.|+|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999987643
No 135
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.91 E-value=0.00064 Score=54.52 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.|++|+|||||++.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998876
No 136
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.91 E-value=0.0034 Score=56.41 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=28.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
+++|.++|++|+||||++..++..+..+-..+..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 67999999999999999999999887654444443
No 137
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.91 E-value=0.00098 Score=53.78 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+|+|.|++|+||||+++.+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999976543
No 138
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.91 E-value=0.00047 Score=55.51 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.++++|.|++|+||||+++.+++.+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999988763
No 139
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.91 E-value=0.00084 Score=57.38 Aligned_cols=34 Identities=18% Similarity=0.016 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC--CCceEEEe
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRR--FEGSYFAH 38 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~--~~~~~~~~ 38 (329)
++.|+|++|+|||||+.+++...... -..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 57899999999999999998876654 34566665
No 140
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.90 E-value=0.00063 Score=54.61 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..++|+|.|++|+||||+++.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998764
No 141
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.88 E-value=0.0008 Score=52.57 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|+|++|+||||+++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998875
No 142
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.88 E-value=0.0074 Score=51.49 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
.++++|+|++|+||||++..++..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999988764
No 143
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.87 E-value=0.00082 Score=53.27 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.++|+|.|++|+||||+++.+++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 144
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.87 E-value=0.0004 Score=54.70 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+|+|.|++|+||||+++.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988754
No 145
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.86 E-value=0.0006 Score=53.10 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
++|+|+|++|+||||+++.+++.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988763
No 146
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.86 E-value=0.00057 Score=58.38 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 1 MDTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
|..++|+|.||+|+|||+|+..+++.+
T Consensus 1 m~~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCcCCHHHHHHHHHHhC
Confidence 456899999999999999999998765
No 147
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.84 E-value=0.0024 Score=51.76 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
....|+|.|+.|+||||+++.+++.+......++..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 356899999999999999999999887654334433
No 148
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.84 E-value=0.00067 Score=57.81 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.|++|+||||+++.+++.+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998865
No 149
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.83 E-value=0.00088 Score=53.70 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+|+|+|++|+||||+++.+++.+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999988763
No 150
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.82 E-value=0.00081 Score=54.78 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
....|+|.|++|+||||+++.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988763
No 151
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.82 E-value=0.00078 Score=54.04 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 152
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.82 E-value=0.0052 Score=51.44 Aligned_cols=24 Identities=33% Similarity=0.363 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+++|.|+.|+|||||.+.++...
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999988654
No 153
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.81 E-value=0.0013 Score=55.13 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+|+|.|++|+||||+++.+++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 154
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.81 E-value=0.0012 Score=54.50 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.++.|.|++|+|||||+.+++......-..++|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 57899999999999999999887655545666665
No 155
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.79 E-value=0.0009 Score=51.91 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..|+|.|++|+||||+++.+++.+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988764
No 156
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.79 E-value=0.00088 Score=55.61 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+++|.|++|+|||||++.+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 157
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.78 E-value=0.00098 Score=55.28 Aligned_cols=26 Identities=15% Similarity=0.081 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+..|+|.|++|+||||+++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998875
No 158
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.77 E-value=0.00089 Score=53.61 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 159
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.77 E-value=0.00099 Score=54.42 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+|+|+|++|+||||+++.+++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 160
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.77 E-value=0.00098 Score=53.79 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..+|+|.|++|+|||||++.++..+..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999887653
No 161
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.76 E-value=0.0017 Score=52.00 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..+++|.|++|+||||+++.++..+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999887654
No 162
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.76 E-value=0.0025 Score=50.48 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
+|+|.|++|+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998753
No 163
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.75 E-value=0.00095 Score=53.61 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.|++|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 164
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.75 E-value=0.00081 Score=55.08 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
...|+|.|++|+||||+++.+++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998865
No 165
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.74 E-value=0.0036 Score=54.04 Aligned_cols=50 Identities=18% Similarity=-0.019 Sum_probs=35.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLS 58 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 58 (329)
..++.|.|++|+|||+|+.+++.....+...++|++ . ..+...+...+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s----l--E~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS----L--EMGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE----S--SSCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE----C--CCCHHHHHHHHHH
Confidence 358999999999999999999987665445666765 2 2344455554443
No 166
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.74 E-value=0.00093 Score=54.50 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
...|+|.|++|+||||+++.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999998764
No 167
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.74 E-value=0.0012 Score=53.89 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.++.|.|++|+|||||+..++......-..+.|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 57899999999999999999976654334555554
No 168
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.73 E-value=0.0031 Score=56.62 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
++++.++|++|+||||++..++..+...-..+..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 57999999999999999999998876654444443
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.72 E-value=0.00088 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+.++|+||+|+|||||++.+...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999988654
No 170
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.72 E-value=0.0077 Score=54.85 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE 32 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~ 32 (329)
+.+.|.|++|+|||+++..++..+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 48999999999999999999988765543
No 171
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.71 E-value=0.005 Score=55.62 Aligned_cols=33 Identities=30% Similarity=0.563 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
..+.|+|++|+|||||+..++.....++..++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 357899999999999999999876654444443
No 172
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.70 E-value=0.0027 Score=52.08 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..+|+|.|++|+||||+++.+++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999998875
No 173
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.70 E-value=0.002 Score=55.31 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
..+++|+|++|+||||++..++..+...-..+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l 135 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 135 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 5699999999999999999999887655333333
No 174
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.69 E-value=0.0018 Score=55.74 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=30.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
+.|+|+|+|-|||||||.+..++-.+...-..+..+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6799999999999999999999998776655555554
No 175
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.69 E-value=0.0011 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 176
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.68 E-value=0.0012 Score=52.83 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
...+|+|+|++|+||||+++.+++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3578999999999999999999875
No 177
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.68 E-value=0.0013 Score=52.99 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+++|.|+.|+|||||++.++..+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 178
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.68 E-value=0.0011 Score=52.50 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 179
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.68 E-value=0.0031 Score=51.04 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCC-ceEEEeccchhhhcCChHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFE-GSYFAHNVREAEETGKLADLRKELLS 58 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 58 (329)
....|+|.|+.|+||||+++.+++.+..... .+.+.. .+....+.+.++.++.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~r----ep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTR----EPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE----SSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeee----CCCCCHHHHHHHHHHh
Confidence 4578999999999999999999998865432 444444 2222344555555544
No 180
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.67 E-value=0.0012 Score=51.07 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.|+|+|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988764
No 181
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.66 E-value=0.00089 Score=53.46 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+.+.|+||+|+|||++|..+++.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999988864
No 182
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.66 E-value=0.0012 Score=52.85 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
....|+|.|++|+||||+++.+++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998876
No 183
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.65 E-value=0.0013 Score=51.73 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998764
No 184
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.62 E-value=0.0035 Score=51.56 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCc-eEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEG-SYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~ 38 (329)
..+|+|.|++|+||||+++.+++.+....-. +....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 4689999999999999999999987654333 44444
No 185
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.61 E-value=0.0016 Score=55.53 Aligned_cols=28 Identities=14% Similarity=0.123 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
.+.+|+|.|++|+|||||++.+...+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3568999999999999999999887653
No 186
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.61 E-value=0.0014 Score=54.69 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+|+|.|++|+||||+++.+++.+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999988654
No 187
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.61 E-value=0.002 Score=56.56 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+++.|+|++|+||||||.+++......-..++|+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 368999999999999999999987765545677776
No 188
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.60 E-value=0.0023 Score=49.99 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
.++++|.|++|+|||||+..++..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 5789999999999999999999876543
No 189
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.60 E-value=0.0012 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.|+|+|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 190
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.60 E-value=0.0014 Score=55.89 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.++++|.||+|+|||+|+..+++.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998875
No 191
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.59 E-value=0.002 Score=56.38 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+++.|+|++|+|||||+.+++......-..++|+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 368999999999999999999987665545667766
No 192
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.59 E-value=0.0013 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
.+|+|+|++|+||||+++.+++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 193
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.59 E-value=0.0051 Score=54.37 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=57.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceE-EEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSY-FAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
..+++|+|+.|+||||++..++..+.......+ +.....+....... .+..+.............+...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~---------~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK---------SIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS---------SEEEEEEBTTTBSCSHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc---------eEEEeeecCCCHHHHHHHHHHHh
Confidence 357999999999999999999987654322333 32211000000000 00000000000112344566666
Q ss_pred cCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206 82 TRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDK 122 (329)
Q Consensus 82 ~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~ 122 (329)
...+-+|++|++.+.+.+...+... ..|..++.|+...
T Consensus 207 ~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTN 244 (372)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCC
T ss_pred hhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcc
Confidence 6677799999998776665544432 2345566666654
No 194
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.59 E-value=0.001 Score=55.50 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+++|.|++|+||||+++.+++.+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999988764
No 195
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.59 E-value=0.0031 Score=55.30 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||++.++.-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 357899999999999999988753
No 196
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.58 E-value=0.0096 Score=47.88 Aligned_cols=109 Identities=13% Similarity=0.027 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
..+.+++|+.|.||||.+...+.++..+...++.+....+ ...... .+.+.++.........+ . ..+.+...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~ge~----~i~s~~g~~~~a~~~~~-~-~~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYSEE----DVVSHNGLKVKAVPVSA-S-KDIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSS-G-GGGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--CcchHH----HHHhhcCCeeEEeecCC-H-HHHHHHHh
Confidence 3688899999999999999999988666555555431111 111111 22233222111000000 1 11222222
Q ss_pred CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206 83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK 122 (329)
Q Consensus 83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~ 122 (329)
+.--+|++|++. +.+.+ +++..+. ..+..||+|.++.
T Consensus 100 ~~~dvViIDEaQF~~~~~V-~~l~~l~--~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIV-EVVQVLA--NRGYRVIVAGLDQ 138 (214)
T ss_dssp SSCCEEEECCGGGSCTTHH-HHHHHHH--HTTCEEEEEECSB
T ss_pred cCCCEEEEECcccCCHHHH-HHHHHHh--hCCCEEEEEeccc
Confidence 223399999983 34444 3333322 2377899999854
No 197
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.56 E-value=0.00081 Score=54.35 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
++|+|.|++|+||||+++.+++.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999988754
No 198
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.55 E-value=0.0016 Score=53.45 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+|+|.|++|+||||+++.+++.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988763
No 199
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.55 E-value=0.0024 Score=52.82 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH-hcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI-SRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~~~~~~ 38 (329)
.++.|.|++|+|||+||.+++... .+....++|++
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 578999999999999999988654 33334455544
No 200
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.54 E-value=0.0014 Score=52.75 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+|+|+|++|+||||+++.++..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998764
No 201
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.54 E-value=0.0024 Score=54.51 Aligned_cols=36 Identities=11% Similarity=-0.002 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCC-ceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFE-GSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~ 38 (329)
..+++|.|++|+|||||+..++........ .+.|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 358999999999999999999987765433 455554
No 202
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0028 Score=54.26 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
..+++|.|+.|+||||+++.++..+...-..+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l 133 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 133 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4689999999999999999999877654333333
No 203
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.51 E-value=0.0012 Score=57.15 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.++|+|.||.|+|||+|+..+++.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999998765
No 204
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.51 E-value=0.0021 Score=51.97 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+|+|.|++|+||||+++.+++.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998765
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.50 E-value=0.0033 Score=49.20 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..+|+|+|+.|+||||+++.++..+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468899999999999999999987643
No 206
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.50 E-value=0.0031 Score=51.52 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
...|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999987654
No 207
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.50 E-value=0.0017 Score=52.89 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+++|.||+|+|||||++.++....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988754
No 208
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.50 E-value=0.006 Score=52.94 Aligned_cols=50 Identities=16% Similarity=-0.002 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLST 59 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 59 (329)
.++.|.|++|+|||+|+.+++......-..+.|++ -..+...+...++..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSD 96 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHH
Confidence 58999999999999999999988765445566655 123445555555443
No 209
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.49 E-value=0.0019 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
...+|+|.|++|+||||+++.+++
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 210
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.49 E-value=0.0017 Score=56.35 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
++|+|.|++|+|||||+..+++.+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 211
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.49 E-value=0.0015 Score=51.01 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAF 23 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~ 23 (329)
..+++|.|++|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999953
No 212
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.48 E-value=0.0014 Score=52.63 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
.+|+|+|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 213
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.48 E-value=0.0016 Score=56.05 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
++|+|+|++|+|||||+..+++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998875
No 214
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.48 E-value=0.0033 Score=54.34 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
..+++.|+|++|+||||++..++..+...-..+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999999999999877654444444
No 215
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.48 E-value=0.0029 Score=51.55 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..++.|.|++|+|||||++.++....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999988543
No 216
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.48 E-value=0.0031 Score=54.64 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
..+++|.|+.|+||||+++.++..+...-..+.+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 56899999999999999999998776554444443
No 217
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.47 E-value=0.0019 Score=53.89 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+|+|.|++|+||||+++.+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999988753
No 218
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.46 E-value=0.0019 Score=51.80 Aligned_cols=25 Identities=20% Similarity=0.233 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
++|+|.|++|+||||+++.+++.+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999988763
No 219
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.45 E-value=0.0024 Score=52.80 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh-cCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~ 38 (329)
..+++|.|++|+|||||++.++.... ..-..++++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 35789999999999999999985322 2223444543
No 220
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.44 E-value=0.0057 Score=52.99 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC------CCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~ 38 (329)
.++.|+|++|+|||+|+.+++...... -..++|+.
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 588999999999999999999875432 24566665
No 221
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.43 E-value=0.0032 Score=51.78 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc------CCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~------~~~~~~~~~ 38 (329)
.++.|.|++|+|||||+.+++..... .-..++|+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 57899999999999999999986432 134566665
No 222
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.41 E-value=0.0011 Score=56.62 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
...+|+|+|++|+||||+++.+++.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999988654
No 223
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.39 E-value=0.0022 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 224
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.39 E-value=0.0039 Score=50.69 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+.|+|.|.+|+|||||+..++......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 35789999999999999999999875443
No 225
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.39 E-value=0.0047 Score=50.31 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
...|+|.|+.|+||||+++.+++.+..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999999998765
No 226
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.39 E-value=0.0018 Score=52.67 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|+|++|+|||||++.++..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999998865
No 227
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.39 E-value=0.0025 Score=52.36 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..|+|.|++|+||||+++.+++.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998864
No 228
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.38 E-value=0.0045 Score=51.64 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
...++++.|.+|+||||++..++..+. .-..+..+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vv 47 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYV 47 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEE
Confidence 457899999999999999999998876 43334443
No 229
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.38 E-value=0.0024 Score=50.84 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+|+|+|+.|+||||+++.+++.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998864
No 230
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.38 E-value=0.0047 Score=50.16 Aligned_cols=34 Identities=21% Similarity=-0.050 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.|++.|.||+||||++...+.....+-..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 4889999999999999999988766543444443
No 231
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.38 E-value=0.0023 Score=51.80 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998876
No 232
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.38 E-value=0.0023 Score=51.99 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..|+|.|++|+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 233
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.37 E-value=0.0033 Score=55.29 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+++.|+|++|+|||+||.+++......-..++|+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 358899999999999999999987765555677776
No 234
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.36 E-value=0.0028 Score=52.56 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+|+|.|+.|+|||||++.++..+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 235
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.36 E-value=0.0016 Score=51.71 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.|+|.|++|+|||+||..++++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998763
No 236
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.34 E-value=0.0041 Score=52.57 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..++.|.|++|+|||||+.+++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 358999999999999999999986554
No 237
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.33 E-value=0.0043 Score=50.25 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+.|+|.|.+|+|||||+..++......
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 45789999999999999999999876544
No 238
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.31 E-value=0.0043 Score=54.40 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
..++.|+|+.|+||||+++.++..+...-..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l 190 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 190 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEE
Confidence 4689999999999999999999887654333333
No 239
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.31 E-value=0.003 Score=54.47 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+.+++|.|++|+|||||++.+...+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999887765
No 240
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.31 E-value=0.003 Score=54.33 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..+|+|.|++|+|||||++.++..+..
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccc
Confidence 468999999999999999999887653
No 241
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.29 E-value=0.011 Score=64.28 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
+-|.++||+|+|||++|+.++..
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CeEEEECCCCCCHHHHHHHHHhc
Confidence 56889999999999999887664
No 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.28 E-value=0.0027 Score=51.14 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+++|.|+.|+|||||++.++..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987653
No 243
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.26 E-value=0.0026 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+|+|.|++|+||||+++.+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999874
No 244
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.25 E-value=0.002 Score=50.26 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
++++|+|++|+|||||++.++..+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999877643
No 245
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.25 E-value=0.0057 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+|+|.|+.|+|||||++.++..+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999988765
No 246
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.25 E-value=0.0034 Score=48.18 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.|+.|+|||||++.++...
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3589999999999999999999876
No 247
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.25 E-value=0.0028 Score=53.75 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
..+|+|+|++|+||||+++.++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999983
No 248
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.24 E-value=0.0023 Score=53.20 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+.|+|+|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46799999999999999999998763
No 249
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.24 E-value=0.054 Score=44.28 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
.+.++|.|+.|+|||++.....-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 36789999999999987776653
No 250
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.23 E-value=0.0051 Score=55.43 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~ 38 (329)
.+++|.++|.+|+||||++..++..+..+ -..+..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 36789999999999999999999988765 33444443
No 251
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.21 E-value=0.0048 Score=51.65 Aligned_cols=109 Identities=12% Similarity=0.084 Sum_probs=56.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEec-cchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHN-VREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 81 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (329)
..+++|+|+.|+|||||++.++..+...+.+.+++.. .-+....... .+..+....-........+...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~---------~~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK---------SIVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEEBTTTBSCHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc---------eeeeHHHhCCCHHHHHHHHHHHH
Confidence 3589999999999999999998876543233333321 0000000000 00000000000011233444455
Q ss_pred cCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchh
Q 020206 82 TRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQ 123 (329)
Q Consensus 82 ~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~ 123 (329)
...+-+|++|+..+.+....++... ..+..+++|+....
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 5566689999997666655544432 23556777777643
No 252
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.21 E-value=0.005 Score=56.00 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
..+++|+|+.|+|||||++.++..+...-..+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 4689999999999999999999877654333433
No 253
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.20 E-value=0.009 Score=47.66 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.|+|-|.-|+||||.++.+++.+..+...+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4788999999999999999999887765666655
No 254
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.19 E-value=0.041 Score=51.91 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+.++|+|++|+||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999998887664
No 255
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.19 E-value=0.0032 Score=55.69 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.++|+|.||+|+|||+|+..+++.+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 36899999999999999999998764
No 256
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.19 E-value=0.017 Score=52.07 Aligned_cols=53 Identities=28% Similarity=0.448 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLS 58 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 58 (329)
..+.|.|.+|+|||+|+.+++.........++.+.-.++- .....++++.+..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER--~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER--TREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCC--HHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCc--chHHHHHHHHhhh
Confidence 4578999999999999999999875443333333212111 1234455555544
No 257
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.18 E-value=0.0062 Score=52.21 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++|+|+|-||+||||++..++..+...-..+..+.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4578889999999999999999998876644455544
No 258
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.17 E-value=0.0065 Score=53.35 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
+.++|+|+|.+|+|||||+..++..+......+..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 457899999999999999999998775543333333
No 259
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.17 E-value=0.0032 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+++|+|+.|+|||||++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998765
No 260
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.11 E-value=0.0023 Score=57.52 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..++|+|+|++|+||||+++.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999987654
No 261
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.11 E-value=0.0048 Score=55.85 Aligned_cols=36 Identities=19% Similarity=-0.011 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|.|.+|+|||+|+.+++.....+-..++|++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 358999999999999999999998765544566654
No 262
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.11 E-value=0.0025 Score=55.38 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
.-+.++|++|+|||+||+.+++....
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35789999999999999999987654
No 263
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.09 E-value=0.0067 Score=51.74 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
.++++|+|++|+||||++..++..+...-..+.+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 46888999999999999999998876554444444
No 264
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.08 E-value=0.0021 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=16.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-HHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFF-SKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~-~~~ 27 (329)
..+++|+|+.|+|||||++.++ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 265
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.07 E-value=0.011 Score=55.57 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+++|.|+.|+|||||++.++...
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999998753
No 266
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.05 E-value=0.0068 Score=63.95 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=30.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+.+.|+||+|+|||+||.+++.....+-..+.|+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 468999999999999999999988776656677766
No 267
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.04 E-value=0.0089 Score=51.91 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=30.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
+.+++++.|-||+||||++..++..+...-..+..+.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3578999999999999999999998877655566655
No 268
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.02 E-value=0.0047 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
....|+|.|++|+|||||...++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999975
No 269
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.96 E-value=0.0089 Score=50.06 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
++|+|.|-||+||||++..++..+...-..+..+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57788999999999999999998876544455543
No 270
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.95 E-value=0.0033 Score=56.62 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
+++|.|+|++|+||||++..++..+..+-..+.++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999999998776543334444
No 271
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.94 E-value=0.012 Score=50.71 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..++.|+|++|+|||+|+.+++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999864
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.93 E-value=0.0062 Score=51.98 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+++.+.|++|+||||++..++..+...-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 568899999999999999999988765544455544
No 273
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.92 E-value=0.013 Score=53.10 Aligned_cols=51 Identities=18% Similarity=0.017 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEeccchhhhcCChHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAHNVREAEETGKLADLRKELLST 59 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 59 (329)
..++.|.|++|+|||+|+.+++...... -..++|++ . ..+...+...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s----l--E~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS----L--EMPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE----S--SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE----C--CCCHHHHHHHHHHH
Confidence 3589999999999999999999877643 33566655 2 23455566555443
No 274
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.91 E-value=0.0085 Score=55.38 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCce
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGS 34 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~ 34 (329)
..+|+++|++|+||||+++.+++.+...+-..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~ 66 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPT 66 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCe
Confidence 46899999999999999999998875444333
No 275
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.91 E-value=0.0043 Score=50.26 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
...+|+|+|++|+||||+++.+++.+
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998765
No 276
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.90 E-value=0.0054 Score=49.14 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+..+|+|.|+.|+||||+++.+++.+.
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999999874
No 277
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.89 E-value=0.0064 Score=56.41 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||.+.++..
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999988764
No 278
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.89 E-value=0.012 Score=53.27 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLS 58 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 58 (329)
..+.|.|.+|+|||+|+.+++..+......++.+.-.++- .....++++.+..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER--~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGER--TREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCC--SHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccC--cHHHHHHHHhhhc
Confidence 3578999999999999999999875443333333212111 1234455555543
No 279
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.88 E-value=0.0053 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+..|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999998864
No 280
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.88 E-value=0.014 Score=50.53 Aligned_cols=36 Identities=33% Similarity=0.287 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.++++..|.||+||||+|..++..+.+.-..+..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 467888899999999999999998877655566555
No 281
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.87 E-value=0.0057 Score=46.48 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
+.|+|.|++|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999764
No 282
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.86 E-value=0.012 Score=51.47 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=30.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHh--cCCCceEEEe
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKIS--RRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~--~~~~~~~~~~ 38 (329)
..+++++.|-||+||||++..++..+. ..-..+..+.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 357999999999999999999999887 5555555554
No 283
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.85 E-value=0.0066 Score=55.20 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~ 38 (329)
..++.|.|++|+|||||+.+++...... -..++|++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3589999999999999999999877543 23566655
No 284
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.85 E-value=0.0065 Score=49.93 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+|+|.|++|+||||+++.+++.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998865
No 285
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.85 E-value=0.0089 Score=54.82 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
.+++|.|+|.+|+||||++..++..+...-..+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 357899999999999999999998876543334443
No 286
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.83 E-value=0.01 Score=50.40 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
-++|+|.|-||+||||++..++..+...-..+..+.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367888999999999999999998876544444443
No 287
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.83 E-value=0.016 Score=53.48 Aligned_cols=51 Identities=6% Similarity=-0.059 Sum_probs=35.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEeccchhhhcCChHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAHNVREAEETGKLADLRKELLST 59 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 59 (329)
..++.|.|++|+|||+|+.+++...... -..++|++ . ..+...+...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s----~--E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM----L--EESVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE----S--SSCHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe----c--cCCHHHHHHHHHHH
Confidence 3578999999999999999999987665 34566665 2 23445555544433
No 288
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.81 E-value=0.0042 Score=53.65 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999998754
No 289
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.80 E-value=0.0057 Score=48.39 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-.|+|.|++|+|||||+..++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 290
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.79 E-value=0.0083 Score=52.49 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..++.|+|++|+|||||+.+++..+.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998763
No 291
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.78 E-value=0.0045 Score=50.96 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||.+.++.-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 357899999999999999988753
No 292
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.77 E-value=0.011 Score=51.62 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+|+|+|++|+|||||...+.......
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 6789999999999999999999866544
No 293
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.74 E-value=0.012 Score=52.64 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
.+++.|+|++|+||||++..++..+...-..+.++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 46889999999999999999999887654444443
No 294
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.73 E-value=0.0048 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|+.|+|||||.+.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999988753
No 295
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.73 E-value=0.0058 Score=50.42 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|+.|+|||||.+.++.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998864
No 296
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.011 Score=55.70 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCC------ceEEEeccc---------h-----hhhcCChHHHHHHHHHHHhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE------GSYFAHNVR---------E-----AEETGKLADLRKELLSTLLND 63 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~------~~~~~~~~~---------~-----~~~~~~~~~~~~~i~~~~~~~ 63 (329)
.+++|.|+.|+|||||++.++......-. .+.++.... + .............++..+...
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 57899999999999999999864322111 112211000 0 000001112333444444433
Q ss_pred CCCCCCCCc------chHHHHhhhcCceEEEEEecCC---Chhh---HHHHhcccCCCCCCcEEEEEeCchhHHHh
Q 020206 64 GNMNKFPNI------GLNFQSKRLTRKKVLIVFDDVN---HPRQ---IEFLIGNLDWFASGSRILITARDKQALIN 127 (329)
Q Consensus 64 ~~~~~~~~~------~~~~l~~~~~~~~~LlvlDdv~---~~~~---~~~l~~~l~~~~~~~~ilitsr~~~~~~~ 127 (329)
...+..... ..-.+.+.+...+-+|++|+-- +... +..++..+.. ..+..+|++|.+......
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~-~~g~tviivtHdl~~~~~ 533 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL-HNKKTAFIVEHDFIMATY 533 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHH
Confidence 222122221 2334455666778899999872 2322 2222222210 136678888888755544
No 297
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.71 E-value=0.022 Score=45.64 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRF 31 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~ 31 (329)
+.|+|-|.-|+||||+++.+++.+...+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~ 30 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDY 30 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTS
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999886544
No 298
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.70 E-value=0.0032 Score=54.97 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
-+.|+|++|+|||++|+.+++...
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 388999999999999999998764
No 299
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.69 E-value=0.0062 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..|+|.|++|+|||||...++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 300
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.69 E-value=0.0046 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.118 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|+.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999875
No 301
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.68 E-value=0.02 Score=46.31 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
...|+|.|+.|+||||+++.+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 578999999999999999999998875
No 302
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.66 E-value=0.0076 Score=46.60 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-+.|.|.|++|+||||||..+.++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 467899999999999999999874
No 303
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.66 E-value=0.0073 Score=53.31 Aligned_cols=25 Identities=24% Similarity=0.120 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.++|+|++|+|||||++.++...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999998764
No 304
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.65 E-value=0.005 Score=48.31 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~ 25 (329)
-|+|.|++|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 305
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.65 E-value=0.006 Score=54.90 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
+-+.++|++|+|||++|+.++..+..
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 56899999999999999999988643
No 306
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.63 E-value=0.0082 Score=47.04 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
...|+|.|++|+|||||+..++..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999763
No 307
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.63 E-value=0.0087 Score=51.15 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|+|++|+|||||++.++.-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3579999999999999999998876
No 308
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.60 E-value=0.0058 Score=50.35 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.|+.|+|||||++.++.-+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999987654
No 309
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.58 E-value=0.017 Score=50.53 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+++++.|.||+||||+|..++..+...-..+..+.
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 457778899999999999999998877655555554
No 310
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.55 E-value=0.015 Score=50.62 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
...+++|.|++|+|||||...++..+......+.+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i 88 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAV 88 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEE
Confidence 35689999999999999999998766543333333
No 311
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.55 E-value=0.0055 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||++.++.-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 357899999999999999998754
No 312
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.54 E-value=0.0061 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|+.|+|||||++.++.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999988753
No 313
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.53 E-value=0.013 Score=52.07 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.++.|.|++|+|||||+.+++-..
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHh
Confidence 578999999999999999987543
No 314
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.53 E-value=0.096 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
..++..|.|++|+|||++.++.+.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 467899999999999999988764
No 315
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.52 E-value=0.016 Score=50.56 Aligned_cols=35 Identities=29% Similarity=0.313 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 36 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 36 (329)
+..+|+|.|++|+|||||+..++..+......+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 45789999999999999999998876544333333
No 316
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.52 E-value=0.0078 Score=50.02 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|+.|+|||||.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 317
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.51 E-value=0.014 Score=48.12 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=26.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
|+|.|-||+||||++..++..+...-..+..+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 556999999999999999998877654455544
No 318
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.50 E-value=0.016 Score=46.24 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=27.1
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIW-GIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
++|+|+ +-||+||||++..++..+...-..+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567777 67899999999999998876544555554
No 319
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.49 E-value=0.0074 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||.+.++.-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 320
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.01 Score=46.76 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
...|+|.|++|+|||||+..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 321
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.48 E-value=0.015 Score=53.11 Aligned_cols=29 Identities=17% Similarity=0.086 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF 31 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~ 31 (329)
..+|+++|++|+||||+++.+++.+...+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 34789999999999999999998765444
No 322
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.47 E-value=0.0086 Score=45.54 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
No 323
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.47 E-value=0.0079 Score=49.74 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||.+.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 324
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.47 E-value=0.0069 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|+.|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998753
No 325
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.46 E-value=0.0099 Score=46.01 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
....|+|.|.+|+|||||+..+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999875
No 326
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.45 E-value=0.0083 Score=50.38 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998874
No 327
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.44 E-value=0.007 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998754
No 328
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.44 E-value=0.009 Score=45.68 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 329
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.44 E-value=0.0061 Score=49.33 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+++|.|+.|+|||||.+.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999987643
No 330
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.44 E-value=0.0071 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|+.|+|||||++.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999998764
No 331
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.43 E-value=0.0079 Score=52.30 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
+.++|.|++|+||||+++.++..+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4589999999999999999988754
No 332
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.43 E-value=0.0095 Score=49.67 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+.++||+|+|||.+|..+++.+
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhh
Confidence 369999999999999999998864
No 333
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.42 E-value=0.011 Score=47.69 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
...|+|.|++|+|||||+..++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 334
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=95.42 E-value=0.022 Score=49.30 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+++++.|-||+||||++..++..+.+.-..+..+.
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 467788999999999999999998887655555554
No 335
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.42 E-value=0.021 Score=45.24 Aligned_cols=35 Identities=11% Similarity=-0.211 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
.++.+++|+.|.||||.+...+.++..+-..+..+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 46899999999999999999999876544444443
No 336
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.41 E-value=0.0073 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+++|.|+.|+|||||.+.++..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999987654
No 337
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.38 E-value=0.0085 Score=50.15 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||++.++.-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 357899999999999999998764
No 338
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.36 E-value=0.013 Score=44.69 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..-|+|.|.+|+|||||+..+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999864
No 339
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.35 E-value=0.0056 Score=50.84 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
.+++|.|+.|+|||||.+.++....
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5789999999999999999876543
No 340
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.33 E-value=0.0088 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
++.|+|.+|+|||++|.+++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999999755
No 341
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.33 E-value=0.008 Score=50.24 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.|+.|+|||||++.++.-+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3578999999999999999987643
No 342
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.33 E-value=0.008 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.262 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 343
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.33 E-value=0.008 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 344
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.32 E-value=0.015 Score=47.40 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..+|+|.|+.|+||||+++.+++.+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998864
No 345
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.30 E-value=0.02 Score=53.81 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..+++++.|.||+||||++..++..+.+.-..+..+.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3578999999999999999999998776544455544
No 346
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.29 E-value=0.012 Score=49.55 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.++|.|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 347
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.29 E-value=0.012 Score=44.91 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~ 26 (329)
|+|.|.+|+|||+|+..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 348
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.28 E-value=0.025 Score=46.46 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=27.9
Q ss_pred CceEEEEEc-CCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206 2 DTCKLGIWG-IGGVGKTAIAGAFFSKISRR-FEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G-~~GiGKTtLa~~~~~~~~~~-~~~~~~~~ 38 (329)
..++|+|++ -||+||||++..++..+... -..+..+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 356777775 68999999999999998876 44455444
No 349
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.26 E-value=0.019 Score=51.47 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
.++.|+|+.|+|||||...++..+...-..+.+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 5799999999999999999998775543334443
No 350
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.25 E-value=0.01 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.||.|+|||||.+.++.-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 357899999999999999999864
No 351
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.25 E-value=0.0043 Score=51.94 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
...|+|.|+.|+||||+++.+++.+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999987765
No 352
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.24 E-value=0.011 Score=45.24 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999998864
No 353
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.22 E-value=0.0089 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|+.|+|||||.+.++..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57899999999999999998764
No 354
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.22 E-value=0.013 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.++|.|++|+||||+++.+++.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999998876
No 355
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.22 E-value=0.011 Score=46.17 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|++|+|||||+..+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999864
No 356
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.21 E-value=0.019 Score=54.43 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+.+.|+|++|+|||+++..++..+.......+.++
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357889999999999999998887655334444444
No 357
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.21 E-value=0.0092 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 357899999999999999998764
No 358
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.20 E-value=0.013 Score=46.26 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
...|+|.|.+|+|||||...+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999875
No 359
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.20 E-value=0.012 Score=46.28 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-.|+|.|.+|+|||||+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 360
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.19 E-value=0.012 Score=45.00 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-|+|.|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 361
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.19 E-value=0.012 Score=45.05 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
--|+|.|++|+|||||+..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3588999999999999999975
No 362
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.18 E-value=0.012 Score=46.20 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-|+|.|.+|+|||||+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 363
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.18 E-value=0.012 Score=45.03 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-|+|.|++|+|||||+..+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 364
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.16 E-value=0.015 Score=44.95 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
...|+|.|.+|+|||||+..+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999874
No 365
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.15 E-value=0.012 Score=45.41 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.-|+|.|.+|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999763
No 366
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.15 E-value=0.015 Score=44.78 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
..-|+|.|.+|+|||||+..+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 34689999999999999999875
No 367
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.15 E-value=0.016 Score=44.35 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
...|+|.|.+|+|||||+..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999763
No 368
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.14 E-value=0.015 Score=45.05 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..-|+|.|++|+|||||+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998764
No 369
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.14 E-value=0.016 Score=44.02 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.--|+|.|++|+|||||+..+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999998763
No 370
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.12 E-value=0.022 Score=53.49 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..+|+|+|++|+||||+++.+++.+..
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999998743
No 371
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.11 E-value=0.015 Score=44.54 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
--|+|.|++|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999863
No 372
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.10 E-value=0.013 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||...++..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998753
No 373
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.10 E-value=0.012 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-.|+|.|.+|+|||||...++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999763
No 374
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.09 E-value=0.012 Score=45.01 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~ 25 (329)
-|+|.|.+|+|||||+..+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998853
No 375
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.09 E-value=0.013 Score=46.05 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-|+|.|.+|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5889999999999999998864
No 376
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.09 E-value=0.0082 Score=49.15 Aligned_cols=24 Identities=29% Similarity=0.184 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+|+|.|+.|+||||+++.++..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999988665
No 377
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=95.06 E-value=0.041 Score=48.13 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHh--cCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKIS--RRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~--~~~~~~~~~~ 38 (329)
.+++++.|-||+||||++..++..+. ..-..+..+.
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45777889999999999999999888 6555555555
No 378
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.05 E-value=0.013 Score=44.92 Aligned_cols=22 Identities=32% Similarity=0.774 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
--|+|.|.+|+|||||+..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4588999999999999999875
No 379
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.04 E-value=0.014 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
.+.+|+|+.|+|||||+..++.-+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999986654
No 380
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.04 E-value=0.014 Score=44.59 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999863
No 381
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.04 E-value=0.011 Score=45.93 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-|+|.|.+|+|||+|+..+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 382
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.03 E-value=0.013 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|+.|+|||||.+.++.-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57899999999999999999864
No 383
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.03 E-value=0.015 Score=45.61 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+.|+|.|.+|+|||||+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999998764
No 384
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.00 E-value=0.014 Score=47.25 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~ 25 (329)
|+|.|.+|+|||+|+..+..
T Consensus 16 ivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHh
Confidence 78899999999999999875
No 385
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.00 E-value=0.013 Score=51.57 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 357899999999999999999864
No 386
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.97 E-value=0.016 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..|+|.|++|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998863
No 387
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.96 E-value=0.015 Score=44.90 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.-|+|.|.+|+|||||+..+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 388
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.96 E-value=0.015 Score=44.90 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.|+|.|.+|+|||||+..+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999853
No 389
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.95 E-value=0.015 Score=53.44 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..+|++.|++|+||||+++.+++.+..
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999864
No 390
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.94 E-value=0.02 Score=43.56 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||...+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999863
No 391
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.94 E-value=0.015 Score=45.32 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.-|+|.|.+|+|||||+..+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 392
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.94 E-value=0.017 Score=45.02 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
...|+|.|++|+|||||...+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999988643
No 393
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.93 E-value=0.016 Score=51.03 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKIS 28 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~ 28 (329)
..++|+|++|+|||||++.++..+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988754
No 394
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.92 E-value=0.016 Score=50.68 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 357899999999999999999864
No 395
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.92 E-value=0.014 Score=45.69 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~ 25 (329)
-|+|.|.+|+|||||+..+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999875
No 396
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.91 E-value=0.016 Score=45.47 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.-|+|.|.+|+|||||+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999863
No 397
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.90 E-value=0.017 Score=50.69 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 357899999999999999999864
No 398
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.89 E-value=0.031 Score=45.21 Aligned_cols=34 Identities=18% Similarity=-0.031 Sum_probs=26.0
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206 4 CKLGIWG-IGGVGKTAIAGAFFSKISRRFEGSYFA 37 (329)
Q Consensus 4 r~v~I~G-~~GiGKTtLa~~~~~~~~~~~~~~~~~ 37 (329)
++++|+| -||+||||++..++..+..+...+..+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 5777877 489999999999999887654444443
No 399
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.88 E-value=0.015 Score=44.92 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
--|+|.|.+|+|||||+..+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3588999999999999999875
No 400
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.87 E-value=0.026 Score=49.77 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=28.6
Q ss_pred CceEEEEEc-CCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 2 DTCKLGIWG-IGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G-~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
+.++|+|+| -||+||||+|..++..+...-..+..+.
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 467888875 9999999999999998766544455554
No 401
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.87 E-value=0.016 Score=45.58 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999998863
No 402
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.86 E-value=0.02 Score=53.54 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..+|+|+|++|+||||+++.+++.+..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 368999999999999999999988653
No 403
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.86 E-value=0.015 Score=51.17 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 57899999999999999999864
No 404
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.86 E-value=0.017 Score=45.02 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998763
No 405
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.85 E-value=0.017 Score=44.99 Aligned_cols=23 Identities=52% Similarity=0.769 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999864
No 406
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.018 Score=45.34 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-|+|.|.+|+|||||+..+...
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999999875
No 407
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.84 E-value=0.017 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||.+.++.-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 357899999999999999999863
No 408
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.83 E-value=0.012 Score=50.46 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|+|+.|+|||||++.++.-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 357899999999999999988753
No 409
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.83 E-value=0.017 Score=44.79 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999988753
No 410
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.82 E-value=0.024 Score=52.61 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+++|+|++|+|||||++.++..+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 3589999999999999999999987653
No 411
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.81 E-value=0.012 Score=46.62 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFF 24 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~ 24 (329)
..|+|.|.+|+|||||+..+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999885
No 412
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.81 E-value=0.017 Score=46.08 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.-|+|.|.+|+|||||+..+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998764
No 413
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.81 E-value=0.019 Score=46.12 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
...|+|.|.+|+|||||+..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999864
No 414
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.81 E-value=0.017 Score=45.06 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-|+|.|.+|+|||||+..+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999863
No 415
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.79 E-value=0.018 Score=44.68 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.-|+|.|.+|+|||||+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999998864
No 416
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.79 E-value=0.018 Score=44.60 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35889999999999999998764
No 417
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.78 E-value=0.017 Score=45.58 Aligned_cols=23 Identities=48% Similarity=0.817 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999864
No 418
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.78 E-value=0.022 Score=45.16 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..-|+|.|.+|+|||||+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998763
No 419
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.78 E-value=0.017 Score=46.16 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999874
No 420
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.77 E-value=0.02 Score=48.05 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 2 DTCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 2 ~~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+.|+|.|.+|+|||||...+...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998754
No 421
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.77 E-value=0.016 Score=49.20 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.|+.|+|||||.+.++.-+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3578999999999999999987643
No 422
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.75 E-value=0.015 Score=50.68 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||.+.++.-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 357899999999999999999864
No 423
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.74 E-value=0.017 Score=46.58 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~ 25 (329)
-|+|.|.+|+|||+|+..++.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998863
No 424
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.73 E-value=0.032 Score=51.65 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.++.|.|++|+|||||+..++......-..++++.
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47899999999999999999987654422344544
No 425
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.73 E-value=0.022 Score=44.61 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..-|+|.|.+|+|||||+..+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999998763
No 426
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.72 E-value=0.018 Score=45.44 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999874
No 427
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.71 E-value=0.019 Score=45.29 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999999864
No 428
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.71 E-value=0.017 Score=44.81 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
...|+|.|.+|+|||||+..+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35689999999999999999985
No 429
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.70 E-value=0.015 Score=51.05 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++|+|+.|+|||||++.++..+... .+.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence 478999999999999999998765432 3344443
No 430
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.70 E-value=0.048 Score=43.78 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=25.5
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 5 KLGI-WGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 5 ~v~I-~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
+|+| .+-||+||||++..++..+.... .+..+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 3444 57899999999999999887765 555554
No 431
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=94.70 E-value=0.023 Score=50.06 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+++++.|.||+||||++..++..+...-..+..+.
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 368899999999999999999988776655555555
No 432
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.70 E-value=0.018 Score=45.67 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
.-|+|.|++|+|||||+..+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999999864
No 433
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.69 E-value=0.019 Score=45.00 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.-|+|.|.+|+|||||+..+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 434
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.69 E-value=0.024 Score=44.12 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.-|+|.|.+|+|||||+..+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46889999999999999999863
No 435
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.67 E-value=0.52 Score=38.43 Aligned_cols=23 Identities=30% Similarity=0.215 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
-+.|+|+.|.|||.++..++...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 47899999999999999887765
No 436
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.66 E-value=0.02 Score=45.05 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-|+|.|.+|+|||||+..+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999998763
No 437
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.65 E-value=0.018 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||.+.++.-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 357899999999999999998863
No 438
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.65 E-value=0.02 Score=45.59 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..|+|.|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999764
No 439
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.64 E-value=0.022 Score=44.63 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999863
No 440
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.64 E-value=0.024 Score=45.00 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..-|+|.|.+|+|||||+..+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 346899999999999999999864
No 441
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.64 E-value=0.02 Score=45.10 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||||+..+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999999874
No 442
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.64 E-value=0.018 Score=44.57 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
.-|+|.|.+|+|||||+..+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999864
No 443
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.63 E-value=0.021 Score=53.86 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
..+.|+|++|+||||||+.++......
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 468999999999999999999876443
No 444
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.58 E-value=0.068 Score=43.41 Aligned_cols=108 Identities=10% Similarity=-0.055 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 82 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (329)
..+.+++|+-|.||||.+...+.++..+-..++.+....+ .... .. +.+..+.....-.... ..+.+ +..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D--~Ryg-~~----i~sr~G~~~~a~~i~~-~~di~-~~~- 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD--TRYS-SS----FCTHDRNTMEALPACL-LRDVA-QEA- 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC--CCC----------------CEEEEESS-GGGGH-HHH-
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC--ccch-HH----HHhhcCCeeEEEecCC-HHHHH-HHh-
Confidence 3578999999999999999988887665444444432111 1122 22 2222221111000000 11111 122
Q ss_pred CceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206 83 RKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDK 122 (329)
Q Consensus 83 ~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~ 122 (329)
+.--+|++|++.-...+..+...+.+ .+..||+|.++.
T Consensus 89 ~~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~ 126 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDG 126 (234)
T ss_dssp TTCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSB
T ss_pred ccCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEeccc
Confidence 22239999998311124444444432 467899999883
No 445
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.56 E-value=0.015 Score=50.94 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..+++|.|+.|+|||||.+.++.-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 357899999999999999999863
No 446
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.56 E-value=0.021 Score=45.21 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
..-|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998753
No 447
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.55 E-value=0.28 Score=43.04 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
-|.|+|++|+||+.+|+.+...-..
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r 178 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGR 178 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred hheEEeCCCchHHHHHHHHHHhccc
Confidence 4779999999999999988765433
No 448
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.53 E-value=1.4 Score=38.91 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
|.|+|++|+|||.+|+.+...-
T Consensus 163 vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 163 VLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEecCCCcCHHHHHHHHHHhc
Confidence 5899999999999999887653
No 449
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.53 E-value=0.022 Score=44.76 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
-|+|.|.+|+|||||++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999996555443
No 450
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.52 E-value=0.046 Score=46.62 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=29.2
Q ss_pred CceEEEEEcC-CCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 2 DTCKLGIWGI-GGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G~-~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
+.++|.|+|. ||+||||++..++..+...-..+..+.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578999986 799999999999998876544555554
No 451
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.52 E-value=0.047 Score=45.83 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=29.2
Q ss_pred CceEEEEEcC-CCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 2 DTCKLGIWGI-GGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~G~-~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
+.++|.|++. ||+||||++..++..+...-..+..+.
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4578899875 899999999999998876555555554
No 452
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.51 E-value=0.028 Score=43.98 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
...|+|.|.+|+|||||...+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999874
No 453
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.51 E-value=0.023 Score=44.74 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.-|+|.|.+|+|||||+..+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 454
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.50 E-value=0.018 Score=44.75 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
...|+|.|++|+|||||...+..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999988753
No 455
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.50 E-value=0.036 Score=51.46 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..+|+++|++|+||||+++.+++.+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 468999999999999999999987654
No 456
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.48 E-value=0.023 Score=44.61 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-.|+|.|.+|+|||||+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 457
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.48 E-value=0.03 Score=49.20 Aligned_cols=30 Identities=17% Similarity=0.027 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEG 33 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~ 33 (329)
..+.|+|++|+|||||++.++..+..+++.
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~ 204 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPD 204 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTT
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCC
Confidence 468899999999999999998876554333
No 458
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.48 E-value=0.023 Score=45.27 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.-|+|.|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998763
No 459
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.47 E-value=0.022 Score=45.26 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.-|+|.|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998753
No 460
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.46 E-value=0.025 Score=44.65 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
.+.|+|.|.+|+|||||+..+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46789999999999999999865
No 461
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.46 E-value=0.014 Score=46.64 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
...|+|.|++|+|||||...++.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35689999999999999998754
No 462
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.45 E-value=0.019 Score=51.56 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 6 LGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
+.|.|.+|+|||+|+.++++....
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEeCCCCcChHHHHHHHHHHHHh
Confidence 578899999999999999887544
No 463
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.45 E-value=0.031 Score=46.43 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=28.2
Q ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 2 DTCKLGIW-GIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
+.++|+|+ +-||+||||++..++..+...-..+..+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 45678887 58899999999999998876544455544
No 464
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.42 E-value=0.016 Score=50.27 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 83 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (329)
..++|+|+.|+|||||++.++..+... .+.+.+....+.... ... ....... +........+...+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~-~~~-------~~i~~~~---ggg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFK-HHK-------NYTQLFF---GGNITSADCLKSCLRM 239 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCS-SCS-------SEEEEEC---BTTBCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccc-cch-------hEEEEEe---CCChhHHHHHHHHhhh
Confidence 478999999999999999988765432 344444322111000 000 0000000 0011134455566677
Q ss_pred ceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206 84 KKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDK 122 (329)
Q Consensus 84 ~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~ 122 (329)
.+-+|++|+....+..+ ++..+. ..+..+++|+...
T Consensus 240 ~p~ilildE~~~~e~~~-~l~~~~--~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 240 RPDRIILGELRSSEAYD-FYNVLC--SGHKGTLTTLHAG 275 (330)
T ss_dssp CCSEEEECCCCSTHHHH-HHHHHH--TTCCCEEEEEECS
T ss_pred CCCEEEEcCCChHHHHH-HHHHHh--cCCCEEEEEEccc
Confidence 78899999997654443 333332 1122356666544
No 465
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.40 E-value=0.023 Score=45.16 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
--|+|.|.+|+|||||+..+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3588999999999999999874
No 466
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.39 E-value=0.027 Score=46.22 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
...|+|.|.+|+|||||...+..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHcC
Confidence 45789999999999999999876
No 467
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.38 E-value=0.04 Score=53.62 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.++..|+|++|+|||+++..++..+...-...+.+.
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~ 406 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 406 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 367899999999999999998887665333344443
No 468
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.36 E-value=0.025 Score=45.19 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
.-|+|.|.+|+|||||+..+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 4689999999999999999876
No 469
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.36 E-value=0.025 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999999999999864
No 470
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.36 E-value=0.024 Score=44.93 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
--|+|.|.+|+|||||+..+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999875
No 471
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.35 E-value=0.019 Score=49.02 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 020206 6 LGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 6 v~I~G~~GiGKTtLa~~~~~ 25 (329)
|+|.|++|+|||||...++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999764
No 472
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.33 E-value=0.028 Score=43.80 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
...|+|.|.+|+|||||+..+...
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998753
No 473
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.33 E-value=0.03 Score=44.15 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
.--|+|.|++|+|||||+..+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999998854
No 474
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.33 E-value=0.026 Score=45.20 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
--|+|.|.+|+|||+|+..+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999998763
No 475
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.32 E-value=0.026 Score=45.11 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.-|+|.|.+|+|||||+..++..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998853
No 476
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.32 E-value=0.05 Score=45.37 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=26.8
Q ss_pred CceEEEE-EcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 2 DTCKLGI-WGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 2 ~~r~v~I-~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++|+| .+-||+||||++..++..+. +-..+..+.
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD 62 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLID 62 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEE
Confidence 3567777 45889999999999999888 544455544
No 477
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.31 E-value=0.021 Score=44.41 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-.|+|.|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998753
No 478
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.30 E-value=0.034 Score=43.79 Aligned_cols=22 Identities=32% Similarity=0.717 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
--|+|.|.+|+|||||+..+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4689999999999999999986
No 479
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.30 E-value=0.032 Score=48.64 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
..++|.|+.|+|||||.+.++.....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57899999999999999999988654
No 480
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.30 E-value=0.026 Score=44.79 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-|+|.|.+|+|||||+..+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998763
No 481
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.29 E-value=0.024 Score=45.56 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
--|+|.|.+|+|||||+..+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3588999999999999999875
No 482
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.29 E-value=0.026 Score=44.85 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
.-|+|.|.+|+|||||+..+..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 4589999999999999999875
No 483
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.29 E-value=0.027 Score=44.94 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-.|+|.|.+|+|||||+..+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998863
No 484
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.28 E-value=0.025 Score=45.99 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
...|+|.|.+|+|||||+..++..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998753
No 485
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.25 E-value=0.027 Score=45.30 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
-|+|.|.+|+|||||+..+...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999764
No 486
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.25 E-value=0.042 Score=52.31 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISRR 30 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~~ 30 (329)
++..|+||||+|||+.+.++...+...
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~ 232 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQ 232 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 478899999999999887777654443
No 487
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.21 E-value=0.038 Score=57.67 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=30.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.+++.|+|++|+||||||.+++......-..++|++
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 468999999999999999999988766656677776
No 488
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.21 E-value=0.044 Score=46.57 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=26.7
Q ss_pred ceEEEEEc---CCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWG---IGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G---~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
.++++|.+ -||+||||++..++..+...-..+..+.
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 35667775 8999999999999998765544455443
No 489
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.20 E-value=0.029 Score=47.92 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
...|+|.|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999763
No 490
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.20 E-value=0.015 Score=45.31 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=9.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.-|+|.|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998753
No 491
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.17 E-value=0.026 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.258 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHHHH-HHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAG-AFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~-~~~~~ 26 (329)
..+.|.|.+|+|||+|+. .+++.
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~ 199 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ 199 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh
Confidence 346899999999999965 55554
No 492
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.17 E-value=0.015 Score=56.85 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSKISR 29 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~~~~ 29 (329)
+.+.++|++|+|||+||+.++.....
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred ceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 45789999999999999999998753
No 493
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.16 E-value=0.028 Score=44.47 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~ 25 (329)
.-|+|.|.+|+|||+|+..+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999886654
No 494
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.15 E-value=0.037 Score=41.84 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+.+|+|+.|+|||++...++.-+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999876543
No 495
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.12 E-value=0.027 Score=44.37 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 020206 5 KLGIWGIGGVGKTAIAGAFFS 25 (329)
Q Consensus 5 ~v~I~G~~GiGKTtLa~~~~~ 25 (329)
-|+|.|.+|+|||||+..+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999874
No 496
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.026 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKI 27 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~ 27 (329)
..+++|.|+.|+|||||++.++...
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3678999999999999999998754
No 497
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.10 E-value=0.04 Score=51.03 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-HHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFF-SKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~-~~~~~~~~~~~~~~ 38 (329)
..++.|.|++|+|||||++.++ .-+...-...+++.
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3578999999999999999963 32222123455554
No 498
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.09 E-value=0.03 Score=47.86 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFF 24 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~ 24 (329)
.+++|.|++|+|||||...+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999987
No 499
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.04 E-value=0.043 Score=57.28 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206 3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 38 (329)
Q Consensus 3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 38 (329)
..++.|.|++|+||||||.+++......-..+.|++
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 358999999999999999999998766545567765
No 500
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.04 E-value=0.03 Score=48.88 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 020206 4 CKLGIWGIGGVGKTAIAGAFFSK 26 (329)
Q Consensus 4 r~v~I~G~~GiGKTtLa~~~~~~ 26 (329)
.+++|.|++|+|||||+..++..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999988643
Done!