Query 020207
Match_columns 329
No_of_seqs 258 out of 557
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:53:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02485 Branch: Core-2/I-Bran 100.0 1.9E-40 4.2E-45 305.3 9.0 203 110-323 1-220 (244)
2 PLN03183 acetylglucosaminyltra 100.0 1.3E-33 2.8E-38 281.3 21.5 202 104-323 74-321 (421)
3 KOG0799 Branching enzyme [Carb 99.8 3.3E-20 7.2E-25 186.7 13.5 188 105-301 99-313 (439)
4 cd02515 Glyco_transf_6 Glycosy 35.6 3E+02 0.0066 26.8 9.4 113 73-198 9-133 (271)
5 PF11337 DUF3139: Protein of u 27.5 40 0.00086 26.5 1.7 8 81-88 47-54 (85)
6 PF03032 Brevenin: Brevenin/es 23.9 34 0.00074 24.5 0.6 18 27-44 2-19 (46)
7 PF12273 RCR: Chitin synthesis 23.7 31 0.00068 29.1 0.5 9 33-41 2-10 (130)
8 PF13396 PLDc_N: Phospholipase 21.8 1.2E+02 0.0027 20.7 3.1 28 24-51 16-43 (46)
9 PRK07718 fliL flagellar basal 20.7 75 0.0016 27.4 2.2 27 28-54 1-29 (142)
10 PF14283 DUF4366: Domain of un 19.9 93 0.002 29.2 2.8 27 25-51 153-179 (218)
No 1
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=1.9e-40 Score=305.33 Aligned_cols=203 Identities=25% Similarity=0.458 Sum_probs=128.0
Q ss_pred EEEEEEcCC-CCChhHHHHHHHhcCCCCceEEEEeCCCCCC------CC--ccceeeeccC-CcccccCcchHHHHHHHH
Q 020207 110 VAFMFLTPG-NLPFENLWEKFFHGHEDRFSVYVHASSEKPM------HV--SRYFVGRDIR-SEKVAWGRISMLDAEKRL 179 (329)
Q Consensus 110 IAFLfLt~g-~l~l~~Lwe~ff~~~~~~~sIYVHvD~ks~~------~~--s~vF~~r~Ip-s~~V~WG~~SlVeAelrL 179 (329)
|||||++|+ +.++...|.+++. ++...+|||+|+|++. .. ........++ +++|.||++|||+||++|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~--~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l~l 78 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY--HPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGFSLVEATLNL 78 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH----TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc--CCCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCccHHHHHHHH
Confidence 799999977 7665555555543 5677889999999641 10 1111122344 589999999999999999
Q ss_pred HHHHhc-CCCCCEEEEecCCcccCCChHHHHHHHhcC--CcccEEeecCCCCCCCCCCccc----cCccccccccccccc
Q 020207 180 LAHALL-DPDNQQFVLLSDSCIPLHNFDYVYNYLMYT--NVSYVDCFEDPGPHGNGRYSEH----MLPEVEKKDFRKGSQ 252 (329)
Q Consensus 180 L~~AL~-d~~n~yFvLLSgsdiPL~s~~~I~~fL~~~--~~sFIe~~~~p~~~~~~RY~~~----mlp~i~~~~~rkGSQ 252 (329)
|++|++ +++|+|||||||+|+||+++++|++||+.. +.+|+++...++....+||... +.+.++..++++|||
T Consensus 79 l~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~GSq 158 (244)
T PF02485_consen 79 LREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLYKGSQ 158 (244)
T ss_dssp HHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--EEE-S
T ss_pred HHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccccccccccccce
Confidence 999999 899999999999999999999999999985 5788999887654333566543 334444458999999
Q ss_pred eeeecHHHHHHHHhChHHHHHHHhhccCCCCCCcccccchhHhhhhccCCCCCceeEEeeecCccccceee
Q 020207 253 WFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHVGTSYSVQLFRLKTTQVLPFLCYE 323 (329)
Q Consensus 253 WfsLtR~~A~~Vv~d~~~~~~Fk~~c~~~~~~~tc~pDEhyfpTLL~~~~~~~~~~y~l~~~~~~~~~~~~ 323 (329)
||+|||++|++|+.|....+.|+.+|+ .+++|||+||||||.+.+....+. ...+++|+-|+
T Consensus 159 W~~Ltr~~v~~il~~~~~~~~~~~~~~-----~~~~pDE~ffqTll~n~~~~~~~~----~~~~~r~i~W~ 220 (244)
T PF02485_consen 159 WFSLTRDFVEYILDDPNYRPKLKKYFR-----FSLCPDESFFQTLLNNSGHFKDTI----VNRNLRYIDWS 220 (244)
T ss_dssp --EEEHHHHHHHHH-HHHHHHHHHHT------TSSSGGGTHHHHH--SSGGG-B-T----TTSSSEEE-BT
T ss_pred eeEeeHHHHHHhhhhHHHHHHHHHhhc-----CccCcchhhHHHhhcccchhcccc----cCCCEEEEECC
Confidence 999999999999999999999999985 479999999999998772221111 23444666665
No 2
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=281.34 Aligned_cols=202 Identities=19% Similarity=0.295 Sum_probs=146.6
Q ss_pred CCCCCcEEEEEEcC-CCC-ChhHHHHHHHhcCCCCceEEEEeCCCCCCC-----------------Ccccee-eeccCCc
Q 020207 104 HSKNPKVAFMFLTP-GNL-PFENLWEKFFHGHEDRFSVYVHASSEKPMH-----------------VSRYFV-GRDIRSE 163 (329)
Q Consensus 104 ~~~~~KIAFLfLt~-g~l-~l~~Lwe~ff~~~~~~~sIYVHvD~ks~~~-----------------~s~vF~-~r~Ips~ 163 (329)
.+.+||+||||++| |+. ++++|.+.+ .++++.+|||+|+|++.. .+.|+. ++ +.
T Consensus 74 ~~~~~r~AYLI~~h~~d~~~l~RLL~aL---YhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k---~~ 147 (421)
T PLN03183 74 QDKLPRFAYLVSGSKGDLEKLWRTLRAL---YHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITK---AN 147 (421)
T ss_pred CCCCCeEEEEEEecCCcHHHHHHHHHHh---cCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEec---ce
Confidence 44689999999998 663 466666654 678899999999998631 112332 22 36
Q ss_pred ccccCcchHHHHHHHHHHHHhc-CCCCCEEEEecCCcccCCChHH-HHHHHhc-CCcccEEeecCCCCCCCCC-------
Q 020207 164 KVAWGRISMLDAEKRLLAHALL-DPDNQQFVLLSDSCIPLHNFDY-VYNYLMY-TNVSYVDCFEDPGPHGNGR------- 233 (329)
Q Consensus 164 ~V~WG~~SlVeAelrLL~~AL~-d~~n~yFvLLSgsdiPL~s~~~-I~~fL~~-~~~sFIe~~~~p~~~~~~R------- 233 (329)
.|.|||+|||+||+++|+.+|+ ..+|+|||||||+|+||+++++ |+.|+.. .+++||+..++.+.....|
T Consensus 148 ~V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~ 227 (421)
T PLN03183 148 LVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIID 227 (421)
T ss_pred eeccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEec
Confidence 7999999999999999999998 5799999999999999999999 5677766 7899999875422211112
Q ss_pred ---Cc-cc--c---Cc-c-cc-ccccccccceeeecHHHHHHHHh--C--hHHHHHHHhhccCCCCCCcccccchhHhhh
Q 020207 234 ---YS-EH--M---LP-E-VE-KKDFRKGSQWFTLKRQHAMIIMA--D--SLYYTKFKHYCKPNMEGRNCYADEHYLPTL 297 (329)
Q Consensus 234 ---Y~-~~--m---lp-~-i~-~~~~rkGSQWfsLtR~~A~~Vv~--d--~~~~~~Fk~~c~~~~~~~tc~pDEhyfpTL 297 (329)
|. .+ . .+ + .| ..++++|||||+|||++|+||+. | +.....|.+ .+++|||+||||+
T Consensus 228 pgl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~--------~t~~pdE~fFqTV 299 (421)
T PLN03183 228 PGLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYT--------NFVSSPEGYFHTV 299 (421)
T ss_pred CceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHh--------cCCCCchHHHHHH
Confidence 11 00 0 01 1 12 56899999999999999999996 2 233344443 3578999999999
Q ss_pred hccCCCCCceeEEeeecCccccceee
Q 020207 298 FHVGTSYSVQLFRLKTTQVLPFLCYE 323 (329)
Q Consensus 298 L~~~~~~~~~~y~l~~~~~~~~~~~~ 323 (329)
+.+.+....+.+ +++++||=|+
T Consensus 300 l~NS~~f~~t~v----n~nLRyI~W~ 321 (421)
T PLN03183 300 ICNVPEFAKTAV----NHDLHYISWD 321 (421)
T ss_pred Hhhccccccccc----CCceeEEecC
Confidence 988763323332 6788888776
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.83 E-value=3.3e-20 Score=186.73 Aligned_cols=188 Identities=21% Similarity=0.284 Sum_probs=137.1
Q ss_pred CCCC-cEEEEEEcCCCCChhHHHHHHHhc-CCCCceEEEEeCCCCCC-------CCccceeeeccC--CcccccCcchHH
Q 020207 105 SKNP-KVAFMFLTPGNLPFENLWEKFFHG-HEDRFSVYVHASSEKPM-------HVSRYFVGRDIR--SEKVAWGRISML 173 (329)
Q Consensus 105 ~~~~-KIAFLfLt~g~l~l~~Lwe~ff~~-~~~~~sIYVHvD~ks~~-------~~s~vF~~r~Ip--s~~V~WG~~SlV 173 (329)
...+ =+||+.+++|+.. ..+++++. .++.+..+||+|.+++. +-.+.|.+-.|. ...|.|||.|++
T Consensus 99 ~~~~~~~a~~~~v~kd~~---~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l 175 (439)
T KOG0799|consen 99 ELKPFPAAFLRVVYKDYE---QVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSIL 175 (439)
T ss_pred cccccceEEEEeecccHH---HHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhh
Confidence 3344 3566667799853 22444444 45666667999999863 134566665554 368999999999
Q ss_pred HHHHHHHHHHhc-CCCCCEEEEecCCcccCCChHHHHHHHhc-CCcccEEeecCCCCC--CCCC-------Ccc----cc
Q 020207 174 DAEKRLLAHALL-DPDNQQFVLLSDSCIPLHNFDYVYNYLMY-TNVSYVDCFEDPGPH--GNGR-------YSE----HM 238 (329)
Q Consensus 174 eAelrLL~~AL~-d~~n~yFvLLSgsdiPL~s~~~I~~fL~~-~~~sFIe~~~~p~~~--~~~R-------Y~~----~m 238 (329)
.|.+++|+.+++ ..+|+||++|||+|+||+++.++.+.|.. +|.+||+.....+.- .+.. |-. .+
T Consensus 176 ~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~ 255 (439)
T KOG0799|consen 176 AAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLP 255 (439)
T ss_pred HHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCc
Confidence 999999999998 45799999999999999999999999998 999999986643210 0111 110 01
Q ss_pred Ccccc-ccccccccceeeecHHHHHHHHhChHHHHHHHhhccCCCCCCcccccchhHhhhhccC
Q 020207 239 LPEVE-KKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHVG 301 (329)
Q Consensus 239 lp~i~-~~~~rkGSQWfsLtR~~A~~Vv~d~~~~~~Fk~~c~~~~~~~tc~pDEhyfpTLL~~~ 301 (329)
.+.+| ...+++||.|++|+|++|++++.+... ..+.++.+ ++..|||+||+|++.+.
T Consensus 256 ~~~lp~~~ki~~Gs~~~~LsR~fv~y~i~~~~~-~~ll~~~~-----~t~~~dE~f~~Tl~~n~ 313 (439)
T KOG0799|consen 256 WVILPTALKLFKGSAWVSLSRAFVEYLISGNLP-RTLLMYYN-----NTYSPDEGFFHTLQCNP 313 (439)
T ss_pred cccCCCceEEEecceeEEEeHHHHHHHhcCccH-HHHHHHHh-----CccCcchhhhHhhhccc
Confidence 11123 567899999999999999999988443 33444443 47899999999999887
No 4
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=35.60 E-value=3e+02 Score=26.78 Aligned_cols=113 Identities=14% Similarity=0.193 Sum_probs=69.7
Q ss_pred cCCCCCCCCCCCHHHHHhhhhhhhhccCCCCCCCCCcEEEEEEcCCCCChhHHHHHHHhcCC------CCceEEEEeCCC
Q 020207 73 EQLPATPTRELTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNLPFENLWEKFFHGHE------DRFSVYVHASSE 146 (329)
Q Consensus 73 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~KIAFLfLt~g~l~l~~Lwe~ff~~~~------~~~sIYVHvD~k 146 (329)
.|+....+...=|.+++..-- .+++.|||.+..+-|... ..|+.|++..+ .+-..||=.|..
T Consensus 9 ~W~APivwegtf~~~~l~~~y----------~~~n~tIgl~vfatGkY~--~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~ 76 (271)
T cd02515 9 PWLAPIVWEGTFNPDVLDEYY----------RKQNITIGLTVFAVGKYT--EFLERFLESAEKHFMVGYRVIYYIFTDKP 76 (271)
T ss_pred CccCceeecCcCCHHHHHHHH----------HhcCCEEEEEEEEeccHH--HHHHHHHHHHHHhccCCCeeEEEEEeCCc
Confidence 788556667766777765532 567899999999999854 48999998743 345678989975
Q ss_pred CCCCC-----ccceeeeccCCcccccCcchHHHHHHHHHHHH-hcCCCCCEEEEecCC
Q 020207 147 KPMHV-----SRYFVGRDIRSEKVAWGRISMLDAEKRLLAHA-LLDPDNQQFVLLSDS 198 (329)
Q Consensus 147 s~~~~-----s~vF~~r~Ips~~V~WG~~SlVeAelrLL~~A-L~d~~n~yFvLLSgs 198 (329)
..++. ..-+..-.|+ ..-.|-..||..-+.-+-... +.-...||...+...
T Consensus 77 ~~~p~v~lg~~r~~~V~~v~-~~~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd 133 (271)
T cd02515 77 AAVPEVELGPGRRLTVLKIA-EESRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVD 133 (271)
T ss_pred ccCcccccCCCceeEEEEec-cccCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCC
Confidence 53322 2222222222 236899999977665443322 111345665554443
No 5
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=27.55 E-value=40 Score=26.53 Aligned_cols=8 Identities=0% Similarity=0.189 Sum_probs=4.7
Q ss_pred CCCCHHHH
Q 020207 81 RELTDAEN 88 (329)
Q Consensus 81 ~~~~d~~~ 88 (329)
...+++++
T Consensus 47 ~gy~e~~I 54 (85)
T PF11337_consen 47 QGYKESDI 54 (85)
T ss_pred cCCcHHHh
Confidence 45666666
No 6
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=23.93 E-value=34 Score=24.49 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=12.4
Q ss_pred CCCCchhhHHHHHHHHHH
Q 020207 27 HLKRPIWIIAFVTFFIIF 44 (329)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~ 44 (329)
.+||++..++++.+|+++
T Consensus 2 tlKKsllLlfflG~ISlS 19 (46)
T PF03032_consen 2 TLKKSLLLLFFLGTISLS 19 (46)
T ss_pred cchHHHHHHHHHHHcccc
Confidence 467777777777777554
No 7
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.68 E-value=31 Score=29.15 Aligned_cols=9 Identities=11% Similarity=0.707 Sum_probs=4.1
Q ss_pred hhHHHHHHH
Q 020207 33 WIIAFVTFF 41 (329)
Q Consensus 33 ~~~~~~~~~ 41 (329)
|+++++.++
T Consensus 2 W~l~~iii~ 10 (130)
T PF12273_consen 2 WVLFAIIIV 10 (130)
T ss_pred eeeHHHHHH
Confidence 554444443
No 8
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=21.84 E-value=1.2e+02 Score=20.65 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=20.1
Q ss_pred CCCCCCCchhhHHHHHHHHHHHhheeec
Q 020207 24 QRPHLKRPIWIIAFVTFFIIFLTGVYVY 51 (329)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (329)
.|.+..|-.|+++++.++.+-.+.=+++
T Consensus 16 ~~~~~~k~~W~~~i~~~P~iG~i~Yl~~ 43 (46)
T PF13396_consen 16 DRSPSSKILWLIVILFFPIIGPILYLIF 43 (46)
T ss_pred CCCCchhhHHHHHHHHHHHHHHhheEEE
Confidence 3566778999999998887665554443
No 9
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=20.74 E-value=75 Score=27.45 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=17.2
Q ss_pred CCCchhhHHHHHHHHHHHh--heeeccCC
Q 020207 28 LKRPIWIIAFVTFFIIFLT--GVYVYPSG 54 (329)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 54 (329)
+||++++|+++.++++.++ ++|++--+
T Consensus 1 ~kkkl~~i~~i~l~~l~~~g~~~~~~~~~ 29 (142)
T PRK07718 1 MKNKLIKIMLIILIVIALIGTAALVLVMG 29 (142)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4778888887777665544 44554433
No 10
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=19.87 E-value=93 Score=29.17 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=20.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHhheeec
Q 020207 25 RPHLKRPIWIIAFVTFFIIFLTGVYVY 51 (329)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (329)
.+..|..+.+++++++|++...|+|.|
T Consensus 153 ~pekks~~g~ll~lllv~l~gGGa~yY 179 (218)
T PF14283_consen 153 EPEKKSGMGSLLLLLLVALIGGGAYYY 179 (218)
T ss_pred CcccccchHHHHHHHHHHHhhcceEEE
Confidence 444567888888888888877788765
Done!