Query 020207
Match_columns 329
No_of_seqs 258 out of 557
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 13:25:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020207.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020207hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 56.1 43 0.0031 26.5 10.4 109 108-220 1-122 (255)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 21.8 22 0.0016 21.3 1.8 23 29-51 1-24 (34)
3 d2qalc1 d.52.3.1 (C:1-105) Rib 17.3 31 0.0023 25.5 2.2 30 250-279 18-47 (105)
4 d2uubc1 d.52.3.1 (C:2-106) Rib 14.2 23 0.0017 26.2 0.7 30 250-279 18-47 (105)
5 d1j98a_ d.185.1.2 (A:) Autoind 11.2 30 0.0022 27.6 0.6 28 289-316 52-92 (154)
6 d1c9fa_ d.15.2.1 (A:) Caspase- 11.1 24 0.0017 25.6 -0.1 13 285-298 55-67 (87)
7 d1x4ka2 g.39.1.3 (A:8-34) Four 10.9 32 0.0023 19.5 0.4 8 15-22 6-13 (27)
8 d1d4ta_ d.93.1.1 (A:) The Xlp 10.5 80 0.0058 21.9 2.8 22 162-183 3-24 (104)
9 d1ibxa_ d.15.2.1 (A:) Caspase- 9.6 26 0.0019 25.0 -0.3 13 285-298 52-64 (81)
10 d1wyha2 g.39.1.3 (A:8-34) Four 9.4 41 0.003 19.0 0.5 8 15-22 6-13 (27)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=56.05 E-value=43 Score=26.45 Aligned_cols=109 Identities=9% Similarity=0.112 Sum_probs=63.2
Q ss_pred CcEEEEEEcCCC-CChhHHHHHHHhcCCCCceEEEEeCCCCCCCC---ccceee---eccCCccccc----CcchHHHHH
Q 020207 108 PKVAFMFLTPGN-LPFENLWEKFFHGHEDRFSVYVHASSEKPMHV---SRYFVG---RDIRSEKVAW----GRISMLDAE 176 (329)
Q Consensus 108 ~KIAFLfLt~g~-l~l~~Lwe~ff~~~~~~~sIYVHvD~ks~~~~---s~vF~~---r~Ips~~V~W----G~~SlVeAe 176 (329)
|||+.++-|++. .-+++.++..++-..+.+.|+|.-|...+... ...... +-+......+ ...+.-.|-
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~ 80 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALI 80 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhcccc
Confidence 789999999765 44888888887767778999999886543100 000000 0001111111 233444444
Q ss_pred HHHHHHHhcCCCCCEEEEecCCcccCCC-hHHHHHHHhc-CCcccE
Q 020207 177 KRLLAHALLDPDNQQFVLLSDSCIPLHN-FDYVYNYLMY-TNVSYV 220 (329)
Q Consensus 177 lrLL~~AL~d~~n~yFvLLSgsdiPL~s-~~~I~~fL~~-~~~sFI 220 (329)
-..++.| +.+|+++|-+.|++..+ .+.+.+++.. .+..++
T Consensus 81 N~gi~~a----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v 122 (255)
T d1qg8a_ 81 NQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred ccccccc----ccccccccccccccccchHHHHHHHHHhCCCCCeE
Confidence 4445554 56899999999999755 3344455554 445555
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=21.78 E-value=22 Score=21.30 Aligned_cols=23 Identities=35% Similarity=0.817 Sum_probs=14.1
Q ss_pred CCchhhHHHHHHHH-HHHhheeec
Q 020207 29 KRPIWIIAFVTFFI-IFLTGVYVY 51 (329)
Q Consensus 29 ~~~~~~~~~~~~~~-~~~~~~~~~ 51 (329)
|-|.|+|..+..+. +.+++.+.|
T Consensus 1 riPLWlv~tv~G~~vi~~vG~FfY 24 (34)
T d2axtj1 1 RIPLWIVATVAGMGVIVIVGLFFY 24 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEeeehhhhhhHhheeeeee
Confidence 35899988776553 444454444
No 3
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.30 E-value=31 Score=25.52 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=25.3
Q ss_pred ccceeeecHHHHHHHHhChHHHHHHHhhcc
Q 020207 250 GSQWFTLKRQHAMIIMADSLYYTKFKHYCK 279 (329)
Q Consensus 250 GSQWfsLtR~~A~~Vv~d~~~~~~Fk~~c~ 279 (329)
.|.||+=.++.+++|.+|........+++.
T Consensus 18 ~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2qalc1 18 NSTWFANTKEFADNLDSDFKVRQYLTKELA 47 (105)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCEEcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999887776666654
No 4
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=14.23 E-value=23 Score=26.22 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=25.4
Q ss_pred ccceeeecHHHHHHHHhChHHHHHHHhhcc
Q 020207 250 GSQWFTLKRQHAMIIMADSLYYTKFKHYCK 279 (329)
Q Consensus 250 GSQWfsLtR~~A~~Vv~d~~~~~~Fk~~c~ 279 (329)
.|.||+=.++.+.+|.+|......++++++
T Consensus 18 ~S~W~a~~~~y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2uubc1 18 ESRWYAGKKQYRHLLLEDQRIRGLLEKELY 47 (105)
T ss_dssp SCBCCCCTTTTTHHHHHHHHHHHHHHHSTT
T ss_pred CceEcCChhhhHHHHHHHHHHHHHHHhhcc
Confidence 599999999999999999888777776654
No 5
>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Bacillus subtilis [TaxId: 1423]}
Probab=11.20 E-value=30 Score=27.59 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=21.1
Q ss_pred ccchhHhhhhccC------------CCCCc-eeEEeeecCc
Q 020207 289 ADEHYLPTLFHVG------------TSYSV-QLFRLKTTQV 316 (329)
Q Consensus 289 pDEhyfpTLL~~~------------~~~~~-~~y~l~~~~~ 316 (329)
.=||.+.|++.+. .|-|| |+|.|...++
T Consensus 52 TlEHL~At~lRn~~~~~d~~~iI~~gPMGCrTGFYl~~~g~ 92 (154)
T d1j98a_ 52 TLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGE 92 (154)
T ss_dssp HHHHHHHHHHHHHHTTCSSEEEEEEEECTTSSEEEEEEEEC
T ss_pred HHHHHHHHHHHhCccccCCccEEEeCCCccccccEEEEECC
Confidence 3488888888752 57788 7999888775
No 6
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.05 E-value=24 Score=25.64 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=10.2
Q ss_pred CcccccchhHhhhh
Q 020207 285 RNCYADEHYLPTLF 298 (329)
Q Consensus 285 ~tc~pDEhyfpTLL 298 (329)
.|.+ ||.|||||=
T Consensus 55 GT~V-dEeYF~tLp 67 (87)
T d1c9fa_ 55 GTEV-TDDCFPGLP 67 (87)
T ss_dssp TCCB-CTTSCSSCC
T ss_pred CcEe-cHHHHhcCC
Confidence 4666 889999984
No 7
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.89 E-value=32 Score=19.54 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=6.3
Q ss_pred ceeccccc
Q 020207 15 FQMMAGYR 22 (329)
Q Consensus 15 ~~~~~~~~ 22 (329)
-+||||+|
T Consensus 6 ktiMPGsr 13 (27)
T d1x4ka2 6 KTIMPGTR 13 (27)
T ss_dssp CCCCSSSC
T ss_pred ccccCCce
Confidence 46889988
No 8
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.51 E-value=80 Score=21.89 Aligned_cols=22 Identities=41% Similarity=0.394 Sum_probs=18.6
Q ss_pred CcccccCcchHHHHHHHHHHHH
Q 020207 162 SEKVAWGRISMLDAEKRLLAHA 183 (329)
Q Consensus 162 s~~V~WG~~SlVeAelrLL~~A 183 (329)
+.+-+||.+|--+||..|.+..
T Consensus 3 ~~pwyhG~isR~eAe~lL~~~~ 24 (104)
T d1d4ta_ 3 AVAVYHGKISRETGEKLLLATG 24 (104)
T ss_dssp TCTTBCCSCCHHHHHHHHHHHC
T ss_pred cCCccccCCCHHHHHHHHhhCC
Confidence 4677899999999999887764
No 9
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.60 E-value=26 Score=25.01 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.1
Q ss_pred CcccccchhHhhhh
Q 020207 285 RNCYADEHYLPTLF 298 (329)
Q Consensus 285 ~tc~pDEhyfpTLL 298 (329)
.|.+ ||.|||||=
T Consensus 52 GT~V-~EeYF~tLp 64 (81)
T d1ibxa_ 52 GTEL-TEDYFPSVP 64 (81)
T ss_dssp CSCC-CSSSCSSCC
T ss_pred CcEe-eHHHHhcCC
Confidence 4566 888999984
No 10
>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.37 E-value=41 Score=19.03 Aligned_cols=8 Identities=38% Similarity=0.488 Sum_probs=6.3
Q ss_pred ceeccccc
Q 020207 15 FQMMAGYR 22 (329)
Q Consensus 15 ~~~~~~~~ 22 (329)
-+||||+|
T Consensus 6 ktiMPGsr 13 (27)
T d1wyha2 6 ETVMPGSR 13 (27)
T ss_dssp CBCCSSSC
T ss_pred ceecCCcc
Confidence 46889988
Done!