Query 020208
Match_columns 329
No_of_seqs 121 out of 1154
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:54:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 8.8E-89 1.9E-93 672.2 17.1 326 1-329 435-761 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 1.3E-76 2.8E-81 607.3 25.9 293 1-299 388-680 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 1.5E-61 3.3E-66 501.3 27.5 283 1-295 370-654 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 2.1E-57 4.5E-62 468.7 26.8 275 1-293 348-624 (624)
5 TIGR00733 putative oligopeptid 100.0 5.2E-38 1.1E-42 319.9 24.3 266 2-292 292-589 (591)
6 COG1297 Predicted membrane pro 99.9 6E-25 1.3E-29 217.1 16.4 277 2-297 308-618 (624)
7 PF03169 OPT: OPT oligopeptide 90.1 13 0.00028 39.0 16.1 24 232-258 220-243 (624)
8 TIGR00733 putative oligopeptid 59.0 2.4E+02 0.0052 29.7 19.8 230 36-290 2-266 (591)
9 PF09679 TraQ: Type-F conjugat 39.8 1.2E+02 0.0027 23.4 5.9 49 1-57 1-56 (93)
10 PF13829 DUF4191: Domain of un 34.2 1E+02 0.0022 28.2 5.7 46 3-53 23-68 (224)
11 PF06939 DUF1286: Protein of u 34.0 1.6E+02 0.0034 24.0 6.0 19 113-131 64-82 (114)
12 PF01864 DUF46: Putative integ 33.7 83 0.0018 27.6 4.9 32 182-213 40-71 (175)
13 PF04018 DUF368: Domain of unk 28.8 4.8E+02 0.011 24.3 12.9 125 7-148 84-217 (257)
14 PF13571 DUF4133: Domain of un 28.0 2.3E+02 0.0049 22.5 5.9 48 119-180 15-62 (96)
15 PF03839 Sec62: Translocation 27.0 91 0.002 28.5 4.1 51 4-54 104-157 (224)
16 TIGR01248 drrC daunorubicin re 26.5 3.7E+02 0.0081 22.4 7.7 39 73-111 113-151 (152)
17 KOG2927 Membrane component of 26.3 47 0.001 32.4 2.2 34 4-37 183-217 (372)
18 COG0628 yhhT Predicted permeas 24.6 6.2E+02 0.014 24.2 10.3 85 55-141 238-331 (355)
19 PHA02132 hypothetical protein 23.0 1.5E+02 0.0033 22.1 3.9 27 114-140 41-67 (86)
20 PF14715 FixP_N: N-terminal do 22.9 1.5E+02 0.0031 20.6 3.6 26 5-31 18-43 (51)
21 PF11947 DUF3464: Protein of u 22.9 1.5E+02 0.0033 25.4 4.5 30 33-63 91-120 (153)
22 PF06695 Sm_multidrug_ex: Puta 21.9 84 0.0018 25.7 2.7 25 110-134 96-120 (121)
23 PF06645 SPC12: Microsomal sig 21.0 1.3E+02 0.0028 22.5 3.3 45 9-54 10-54 (76)
24 PF14150 YesK: YesK-like prote 20.9 2.6E+02 0.0057 21.4 4.9 26 248-275 8-33 (81)
25 PF09512 ThiW: Thiamine-precur 20.5 1.4E+02 0.0031 25.5 3.8 28 118-145 89-117 (150)
26 PF11292 DUF3093: Protein of u 20.4 2.6E+02 0.0057 23.7 5.4 16 7-22 9-24 (143)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-89 Score=672.17 Aligned_cols=326 Identities=67% Similarity=1.325 Sum_probs=318.4
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHHHHhhhhheeeeecCCchhHHHHHHHHHHhc
Q 020208 1 MRRYEDIPHWWFYLMLVVTLVVSLVLCTFLKDQVQMPWWGLLFAGAMAFVFTLPISIITATTNQTPGLNIITEYVMGIIY 80 (329)
Q Consensus 1 m~~y~~vP~ww~~~~~v~~~~~~~~~~~~~~~~~~lp~~~~lla~~l~~i~~~~~g~~~g~t~~~p~~~~isqli~g~~~ 80 (329)
||||||||.|||++.+++++++++++|+.|+++.|+|||++++|+++++++++|.|+++|+||++|++|+++|+|.||+.
T Consensus 435 MkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLNiitE~i~Gy~~ 514 (761)
T KOG2262|consen 435 MKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLNIITEYIIGYIY 514 (761)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccHHHHHHHHHHhhc
Confidence 78999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCC
Q 020208 81 PGRPIANVCFKVYGYMSVAQAVSFLNDFKLGHYMKIPPRSMFLVQFIGTVLAGTINLAVAWWLLNSIENICQDELLPPDS 160 (329)
Q Consensus 81 pg~~~~n~~f~~~~~~~~~qa~~~~~DlK~G~yl~~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~~l~~~~ 160 (329)
||+|+|||+||.||+++++||+.++||||+|||||+|||.||.+|++||+++++|+.+|..|++.+++|+|+.+ +++
T Consensus 515 PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~iC~~~---~~s 591 (761)
T KOG2262|consen 515 PGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNICTTD---QNS 591 (761)
T ss_pred CCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhcccccccCC---CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999966 788
Q ss_pred CcccchhHHHHHhHHHhHhhccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhcccccc
Q 020208 161 PWTCPGDRVFFDASVIWGLVGPKRIFGSQGNYPAMNWFFVGGALGPVLVWLLHKAFPKQSWIPLINLPVLLGATGMMPPA 240 (329)
Q Consensus 161 ~~~~p~~~~~~~~si~wg~~gp~~lf~~g~~y~~~~~~~~iG~~~~i~~~l~~r~~P~~~~~~~i~~pv~~~g~~~~~p~ 240 (329)
+|+||..++++++|++||++||+|+|+++++|+.+.|+|++|+++|+++|+++|++||++|.+++|.|++++|.+.+||+
T Consensus 592 ~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg~~~mPpa 671 (761)
T KOG2262|consen 592 PWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLFGGTANMPPA 671 (761)
T ss_pred CccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhhhhhccCcceEecccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHhcChhhhhhhhhhhhhhhHhhHHHHHHHHHHHHhcCCCCccccCCCCC-CCCCCCCCCCC
Q 020208 241 TAVNYNSWIIVGTIFNFFIFRYRKQWWQRYNYILSAAMDAGVAFMAVILYFSVGMEDKGLSWWGTEGE-HCDLATCPTAK 319 (329)
Q Consensus 241 ~~~~~~~~~~vG~~~~~~~rr~~~~w~~ky~~~laagL~aG~~i~~vi~~fa~~~~g~~~~wwGn~~~-~~~~~~~~~~~ 319 (329)
+..||++++++|+++|+++|||+++||+||||++|||||+|.++++++++|++|++|...+||||+++ +|+..+|+..+
T Consensus 672 t~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~~~~WWGn~~~~~c~~a~cp~~~ 751 (761)
T KOG2262|consen 672 TAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGISLNWWGNTVSAGCDLAGCPTAK 751 (761)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCCccccccCcCCCCCCccCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999964 89999999999
Q ss_pred ccccCCCCCC
Q 020208 320 GILVDGCPVN 329 (329)
Q Consensus 320 ~~~~~~~~~~ 329 (329)
+..++++|.|
T Consensus 752 ~v~~~~~~~f 761 (761)
T KOG2262|consen 752 GVVVSGCPVF 761 (761)
T ss_pred eeecCCCCCC
Confidence 9888887764
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=1.3e-76 Score=607.34 Aligned_cols=293 Identities=38% Similarity=0.865 Sum_probs=284.7
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHHHHhhhhheeeeecCCchhHHHHHHHHHHhc
Q 020208 1 MRRYEDIPHWWFYLMLVVTLVVSLVLCTFLKDQVQMPWWGLLFAGAMAFVFTLPISIITATTNQTPGLNIITEYVMGIIY 80 (329)
Q Consensus 1 m~~y~~vP~ww~~~~~v~~~~~~~~~~~~~~~~~~lp~~~~lla~~l~~i~~~~~g~~~g~t~~~p~~~~isqli~g~~~ 80 (329)
||||||||+|||++++++++++++++++.++ +++|||++++|+++++++.+|.|+++|+||+++++|+++|+|.|++.
T Consensus 388 M~~Y~evP~WWy~~~l~is~~~~~~~v~~~~--t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~ 465 (681)
T TIGR00727 388 MKAYKEVPDWWYLAVFLGFFGMGIATVEHWP--TETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYAL 465 (681)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhcc
Confidence 8999999999999999999999999998884 58999999999999999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCC
Q 020208 81 PGRPIANVCFKVYGYMSVAQAVSFLNDFKLGHYMKIPPRSMFLVQFIGTVLAGTINLAVAWWLLNSIENICQDELLPPDS 160 (329)
Q Consensus 81 pg~~~~n~~f~~~~~~~~~qa~~~~~DlK~G~yl~~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~~l~~~~ 160 (329)
||||++||+|+++++++.+||.+++||+|+|||||+|||+||.+|++||++|++++++|++|++++++|+|+++ +.+
T Consensus 466 PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~---~~~ 542 (681)
T TIGR00727 466 PGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTAD---QNA 542 (681)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC---CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976 789
Q ss_pred CcccchhHHHHHhHHHhHhhccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhcccccc
Q 020208 161 PWTCPGDRVFFDASVIWGLVGPKRIFGSQGNYPAMNWFFVGGALGPVLVWLLHKAFPKQSWIPLINLPVLLGATGMMPPA 240 (329)
Q Consensus 161 ~~~~p~~~~~~~~si~wg~~gp~~lf~~g~~y~~~~~~~~iG~~~~i~~~l~~r~~P~~~~~~~i~~pv~~~g~~~~~p~ 240 (329)
+|+||.+++++++|++||++||+|+|++|++|+.++|+|++|+++|+++|+++|++||+ +.|++|.|+++.++++++|+
T Consensus 543 ~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~-~~~~~n~pv~~~~~g~~~~a 621 (681)
T TIGR00727 543 KYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKF-YPRYLDWPMLFVGTGYIPPA 621 (681)
T ss_pred CccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchh-hhhhCCccHHHhhccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999986 77999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHhcChhhhhhhhhhhhhhhHhhHHHHHHHHHHHHhcCCCC
Q 020208 241 TAVNYNSWIIVGTIFNFFIFRYRKQWWQRYNYILSAAMDAGVAFMAVILYFSVGMEDKG 299 (329)
Q Consensus 241 ~~~~~~~~~~vG~~~~~~~rr~~~~w~~ky~~~laagL~aG~~i~~vi~~fa~~~~g~~ 299 (329)
+..+++.+.++|+++|+|+||||++||+||||++|||||+|+++++++++|+++++|..
T Consensus 622 ~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~~ 680 (681)
T TIGR00727 622 TPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDTA 680 (681)
T ss_pred chhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999998753
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=1.5e-61 Score=501.26 Aligned_cols=283 Identities=46% Similarity=0.996 Sum_probs=265.5
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHHHHhhhhheeeeecCCchhHHHHHHHHHHhc
Q 020208 1 MRRYEDIPHWWFYLMLVVTLVVSLVLCTFLKDQVQMPWWGLLFAGAMAFVFTLPISIITATTNQTPGLNIITEYVMGIIY 80 (329)
Q Consensus 1 m~~y~~vP~ww~~~~~v~~~~~~~~~~~~~~~~~~lp~~~~lla~~l~~i~~~~~g~~~g~t~~~p~~~~isqli~g~~~ 80 (329)
|++|+|+|+|||+.++++++++++++++.++.+.++|||++++++++++++++|.++++|+||...++++++|+++|++.
T Consensus 370 ~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~~~l~~~~~li~g~~~ 449 (654)
T TIGR00728 370 VKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGLNIITELIIGYIL 449 (654)
T ss_pred ccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeecccchhhHHHHHhheeec
Confidence 67789999999999999999999988888865568999999999999999999999999999888899999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCC
Q 020208 81 PGRPIANVCFKVYGYMSVAQAVSFLNDFKLGHYMKIPPRSMFLVQFIGTVLAGTINLAVAWWLLNSIENICQDELLPPDS 160 (329)
Q Consensus 81 pg~~~~n~~f~~~~~~~~~qa~~~~~DlK~G~yl~~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~~l~~~~ 160 (329)
||++++||+++++++++++||+|++||||+|||+|+|||+||.+|++|+++|+++++++++++++++++ +++
T Consensus 450 pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~--------~~~ 521 (654)
T TIGR00728 450 PGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGN--------QNN 521 (654)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CCC
Confidence 999999999999999999999999999999999999999999999999999999999999998876652 456
Q ss_pred CcccchhHHHHHhHHHhHhhccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhcccccc
Q 020208 161 PWTCPGDRVFFDASVIWGLVGPKRIFGSQGNYPAMNWFFVGGALGPVLVWLLHKAFPKQSWIPLINLPVLLGATGMMPPA 240 (329)
Q Consensus 161 ~~~~p~~~~~~~~si~wg~~gp~~lf~~g~~y~~~~~~~~iG~~~~i~~~l~~r~~P~~~~~~~i~~pv~~~g~~~~~p~ 240 (329)
+|+||++++++++|++||++||+ +|+.+++|+.+.+++++| +++++.++.||++|| |.+++|+|+++.+..++||.
T Consensus 522 ~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G-~~~i~~~~~~~~~p~--~~~~~~~~~~~~~~~~lp~~ 597 (654)
T TIGR00728 522 NFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVG-VGAVLVWLVRKLFPK--WIKYINPPVAVGGGGYIPPA 597 (654)
T ss_pred CccCCcccchhhheeeeccccch-hcCCCCccHHHHHHHHHH-HHHHHHHHHHHHccc--hhhhcCHHHhhhhhhccCCc
Confidence 89999999999999999999998 999999999999999999 899999999999987 56899999998888888888
Q ss_pred ccchhhHHHHHHHHHHHHHHhcChhhh--hhhhhhhhhhhHhhHHHHHHHHHHHHhc
Q 020208 241 TAVNYNSWIIVGTIFNFFIFRYRKQWW--QRYNYILSAAMDAGVAFMAVILYFSVGM 295 (329)
Q Consensus 241 ~~~~~~~~~~vG~~~~~~~rr~~~~w~--~ky~~~laagL~aG~~i~~vi~~fa~~~ 295 (329)
++.++.++.++|++++++||||+++|| +||||++|||||+||++++++++|++++
T Consensus 598 ~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff~~~~ 654 (654)
T TIGR00728 598 TAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFFCLGL 654 (654)
T ss_pred chhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHhccC
Confidence 888888899999999999999998876 9999999999999999999999999874
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=2.1e-57 Score=468.66 Aligned_cols=275 Identities=40% Similarity=0.853 Sum_probs=253.5
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHHHHhhhhheeeeecCCc--hhHHHHHHHHHH
Q 020208 1 MRRYEDIPHWWFYLMLVVTLVVSLVLCTFLKDQVQMPWWGLLFAGAMAFVFTLPISIITATTNQTP--GLNIITEYVMGI 78 (329)
Q Consensus 1 m~~y~~vP~ww~~~~~v~~~~~~~~~~~~~~~~~~lp~~~~lla~~l~~i~~~~~g~~~g~t~~~p--~~~~isqli~g~ 78 (329)
||+|+|+|+|||+.++++++++++++++.++.++++|+|+.+++++++++++++.++++|+||+|| ++++++|+++|+
T Consensus 348 ~~~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~ 427 (624)
T PF03169_consen 348 MRTYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGL 427 (624)
T ss_pred hhhcCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHH
Confidence 689999999999999999999999988888755799999999999999999999999999999977 699999999999
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCC
Q 020208 79 IYPGRPIANVCFKVYGYMSVAQAVSFLNDFKLGHYMKIPPRSMFLVQFIGTVLAGTINLAVAWWLLNSIENICQDELLPP 158 (329)
Q Consensus 79 ~~pg~~~~n~~f~~~~~~~~~qa~~~~~DlK~G~yl~~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~~l~~ 158 (329)
+.||++++||+++++++++++||+|++||||+|||+|+|||+||.+|++|+++|+++++++++++ +..+.|.++ +
T Consensus 428 ~~pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~--~~~~~~~~~---~ 502 (624)
T PF03169_consen 428 LLPGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL--NQAYPCGPD---Q 502 (624)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCcc---c
Confidence 99999999999999999999999999999999999999999999999999999999999999987 555666643 4
Q ss_pred CCCcccchhHHHHHhHHHhHhhccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhcccc
Q 020208 159 DSPWTCPGDRVFFDASVIWGLVGPKRIFGSQGNYPAMNWFFVGGALGPVLVWLLHKAFPKQSWIPLINLPVLLGATGMMP 238 (329)
Q Consensus 159 ~~~~~~p~~~~~~~~si~wg~~gp~~lf~~g~~y~~~~~~~~iG~~~~i~~~l~~r~~P~~~~~~~i~~pv~~~g~~~~~ 238 (329)
+++++||..|+..+++++||+++|+| +.+|..+++++++|++++++.++++|++|+ ++++.+...++
T Consensus 503 ~~~~~~~ap~a~~~aav~~g~~~~~~----~~~~~~~~~~~~~G~~~~i~~~l~~~~~P~---------~~~~~~~~~~~ 569 (624)
T PF03169_consen 503 GDSFSCPAPQAFAWAAVAWGLIGPQR----GLPYSALPWGFLIGAVLPILFWLLQRKFPS---------PLAFGGASSIG 569 (624)
T ss_pred cccCcCcchHHHHHHHHHHHhcCCcc----cchHHHHHHHHHHHHHHHHHHHHHHhhCCh---------hheeeeccccc
Confidence 45899999999999999999999876 688999999999999999999999988886 35555566666
Q ss_pred ccccchhhHHHHHHHHHHHHHHhcChhhhhhhhhhhhhhhHhhHHHHHHHHHHHH
Q 020208 239 PATAVNYNSWIIVGTIFNFFIFRYRKQWWQRYNYILSAAMDAGVAFMAVILYFSV 293 (329)
Q Consensus 239 p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~ky~~~laagL~aG~~i~~vi~~fa~ 293 (329)
+.+.+++++++++|+++++++||||++||+||||++|||||+||+++++++++++
T Consensus 570 ~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG~~l~~li~~~~~ 624 (624)
T PF03169_consen 570 FYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAGEALMGLIIAFLV 624 (624)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 7777789999999999999999999999999999999999999999999999763
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=5.2e-38 Score=319.87 Aligned_cols=266 Identities=15% Similarity=0.210 Sum_probs=207.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHccCCCCCch---------HHHHHHHHHHHHHHhhhhheeee--ecCCc--hh
Q 020208 2 RRYEDIPHWWFYLMLVVTLVVSLVLCTFLKDQVQMPW---------WGLLFAGAMAFVFTLPISIITAT--TNQTP--GL 68 (329)
Q Consensus 2 ~~y~~vP~ww~~~~~v~~~~~~~~~~~~~~~~~~lp~---------~~~lla~~l~~i~~~~~g~~~g~--t~~~p--~~ 68 (329)
|+++|+|.|+...++++.++. +... .++.|. .+.+++++++|+++..+||+.|+ ||.|| ++
T Consensus 292 r~~~dip~~~v~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~ 365 (591)
T TIGR00733 292 RTEEDLPINIVLTLVALFVIP--LADF----LLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGI 365 (591)
T ss_pred cccccccHHHHHHHHHHHHHH--HHHH----hcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHH
Confidence 457899999644443332221 1111 233342 57788899999999999999999 77899 69
Q ss_pred HHHHHHHHHHhcC------------CCcchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCChHHHHHHHHHHHHHHHHHH
Q 020208 69 NIITEYVMGIIYP------------GRPIANVCFKVYGYMSVAQAVSFLNDFKLGHYMKIPPRSMFLVQFIGTVLAGTIN 136 (329)
Q Consensus 69 ~~isqli~g~~~p------------g~~~~n~~f~~~~~~~~~qa~~~~~DlK~G~yl~~pPr~~f~~QiiGtivg~~v~ 136 (329)
++++|++++.+.+ +...+|++.+++.+.+++||+|++||||+||+++++||+||++|++|+++|++++
T Consensus 366 ~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~ 445 (591)
T TIGR00733 366 GIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVM 445 (591)
T ss_pred HHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999983 4467789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccCCCCCCCCcccchhHHHHHhHHHhHhhccccccCCCCCchhHHHHH-HHHHHHHHHHHHHHHh
Q 020208 137 LAVAWWLLNSIENICQDELLPPDSPWTCPGDRVFFDASVIWGLVGPKRIFGSQGNYPAMNWFF-VGGALGPVLVWLLHKA 215 (329)
Q Consensus 137 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~si~wg~~gp~~lf~~g~~y~~~~~~~-~iG~~~~i~~~l~~r~ 215 (329)
+++++++.+++ ++..+...++++.+++|++..+.+ +..|+.++ .++|.+ .+|+++.+++.++++.
T Consensus 446 ~~v~~ll~~ay-g~~~~~~~~~~~~l~APqA~l~~a--va~gi~~~-----------~l~~~~i~~ga~~g~~l~~~~~~ 511 (591)
T TIGR00733 446 APVLNLLIKAY-GIAGTPTAKGENALPAPQAFLMAA--VTEGVFTG-----------TLEWTMVFIGAGIGIALIIIDEI 511 (591)
T ss_pred HHHHHHHHHHh-cccccccCCCccccCCCHHHHHHH--HHhhhcCC-----------CccHHHHHHHHHHHHHHHHHHHH
Confidence 99998876655 443322233567799999888764 66666543 245755 6678888888888776
Q ss_pred cCCCCCccccChHHHHHHhccccccccchhhHHHHHHHHHHHHHHhcChhh------hhhhhhhhhhhhHhhHHHHHHHH
Q 020208 216 FPKQSWIPLINLPVLLGATGMMPPATAVNYNSWIIVGTIFNFFIFRYRKQW------WQRYNYILSAAMDAGVAFMAVIL 289 (329)
Q Consensus 216 ~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w------~~ky~~~laagL~aG~~i~~vi~ 289 (329)
.++++ ++++.|.+.+++++|.|.+ +++.+++|.+..++|+||+++. .++|.+++||||++||+++++++
T Consensus 512 ~~~~~--~~~~~p~lavgig~yLP~~---~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~ 586 (591)
T TIGR00733 512 LAKRG--SKFRTPVMAVGVGIYLPLS---LGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVF 586 (591)
T ss_pred hhhcc--cccCCchhHHHHHhhcchh---HHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHH
Confidence 66532 3344577779999999876 7889999999999999976531 24678999999999999999998
Q ss_pred HHH
Q 020208 290 YFS 292 (329)
Q Consensus 290 ~fa 292 (329)
++.
T Consensus 587 A~~ 589 (591)
T TIGR00733 587 AAI 589 (591)
T ss_pred HHH
Confidence 853
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=99.93 E-value=6e-25 Score=217.09 Aligned_cols=277 Identities=17% Similarity=0.148 Sum_probs=187.2
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHcc--C-----CCCCchHHHHHHHHHHHHHHhhhhheeeeecCC--c--hhHH
Q 020208 2 RRYEDIPHWWFYLMLVVTLVVSLVLCTFLK--D-----QVQMPWWGLLFAGAMAFVFTLPISIITATTNQT--P--GLNI 70 (329)
Q Consensus 2 ~~y~~vP~ww~~~~~v~~~~~~~~~~~~~~--~-----~~~lp~~~~lla~~l~~i~~~~~g~~~g~t~~~--p--~~~~ 70 (329)
|.++|+|..|-...++...+.-++....+- + ...+-.-+.+++++++|+++..+||+.|..+.+ | ++.+
T Consensus 308 rte~Dl~~~~~~~~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i 387 (624)
T COG1297 308 RTERDLPPKLVLLVLLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGI 387 (624)
T ss_pred chhhcCChhhHHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHH
Confidence 578999998776666555554333222111 0 112235567788888999999999999887753 4 5777
Q ss_pred HHHHHHHHhcC------------CC----cchhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCChHHHHHHHHHHHHHHHH
Q 020208 71 ITEYVMGIIYP------------GR----PIANVCFKVYGYMSVAQAVSFLNDFKLGHYMKIPPRSMFLVQFIGTVLAGT 134 (329)
Q Consensus 71 isqli~g~~~p------------g~----~~~n~~f~~~~~~~~~qa~~~~~DlK~G~yl~~pPr~~f~~QiiGtivg~~ 134 (329)
++.++.+.++. .. ...+++.......++.+++|++||||+||+++++||+|+.+|++|++++++
T Consensus 388 ~~v~~~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~al 467 (624)
T COG1297 388 LSVTLLSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGAL 467 (624)
T ss_pred HHHHHHHHHHHHhccccccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhh
Confidence 77666643322 11 145555667778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccccCCCCCCCCcccchhHHHHHhHHHhHhhccccccCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 020208 135 INLAVAWWLLNSIENICQDELLPPDSPWTCPGDRVFFDASVIWGLVGPKRIFGSQGNYPAMNWFFVGGALGPVLVWLLHK 214 (329)
Q Consensus 135 v~~~v~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~si~wg~~gp~~lf~~g~~y~~~~~~~~iG~~~~i~~~l~~r 214 (329)
+..+|++.+. +.+++..+. .-++..-++| |+..++++..|+++ ..-.|..+..+..+|+.+-..-+.++|
T Consensus 468 vi~pvL~ll~-~aYgf~ga~-~r~~~~l~ap--qa~lma~ia~Gvf~------~~lew~mi~~g~~~gi~lI~id~~l~~ 537 (624)
T COG1297 468 VIAPVLELLN-KAYGFAGAP-PRQGMDLAAP--QATLMATIAKGVFT------GNLEWSMILAGAGIGIVLIGIDERLKG 537 (624)
T ss_pred hHHHHHHHHH-HHhCcCCCC-CCCCCCCcch--HHHHHHHHhcccCC------CCcchHHHHHHHhHhheeeeccHHHhc
Confidence 9999998765 445553211 1022224555 56666777666653 222333333333333333333333333
Q ss_pred hcCCCCCccccChHHHHHHhccccccccchhhHHHHHHHHHHHHHHhcCh-------hhhhhhhhhhhhhhHhhHHHHHH
Q 020208 215 AFPKQSWIPLINLPVLLGATGMMPPATAVNYNSWIIVGTIFNFFIFRYRK-------QWWQRYNYILSAAMDAGVAFMAV 287 (329)
Q Consensus 215 ~~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~-------~w~~ky~~~laagL~aG~~i~~v 287 (329)
|+. +...|++.+|+|+|.|.+ .++++++|.+..|.+.|+++ +.-++..+++||||+.||+++++
T Consensus 538 -----~~~-~~~lpvlAvGvGIylP~s---~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gv 608 (624)
T COG1297 538 -----RGG-KLRLPVLAVGVGIYLPPS---LTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGV 608 (624)
T ss_pred -----CCc-cccccceeeeeeeecChh---hchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHH
Confidence 232 234578889999998765 67899999999998888733 23456789999999999999999
Q ss_pred HHHHHHhcCC
Q 020208 288 ILYFSVGMED 297 (329)
Q Consensus 288 i~~fa~~~~g 297 (329)
+++.....+|
T Consensus 609 i~a~ii~~~g 618 (624)
T COG1297 609 ITALIIVGSG 618 (624)
T ss_pred HHHHHheecC
Confidence 9996655543
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=90.15 E-value=13 Score=39.03 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=15.7
Q ss_pred HHhccccccccchhhHHHHHHHHHHHH
Q 020208 232 GATGMMPPATAVNYNSWIIVGTIFNFF 258 (329)
Q Consensus 232 ~g~~~~~p~~~~~~~~~~~vG~~~~~~ 258 (329)
.|.+++.|.. ....+++|.++.++
T Consensus 220 ~g~g~i~p~~---~~ls~~~G~v~~w~ 243 (624)
T PF03169_consen 220 IGSGLIVPLW---AQLSMFLGAVLAWG 243 (624)
T ss_pred cCCCeeccHH---HHHHHHHHHHHHHH
Confidence 5666665543 45678888888764
No 8
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=58.99 E-value=2.4e+02 Score=29.66 Aligned_cols=230 Identities=10% Similarity=0.064 Sum_probs=117.7
Q ss_pred CchHHHHHHHHHHHHHHhhhhheeeeecCCchhHHH----HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhh----
Q 020208 36 MPWWGLLFAGAMAFVFTLPISIITATTNQTPGLNII----TEYVMGIIYPGRPIANVCFKVYGYMSVAQAVSFLND---- 107 (329)
Q Consensus 36 lp~~~~lla~~l~~i~~~~~g~~~g~t~~~p~~~~i----sqli~g~~~pg~~~~n~~f~~~~~~~~~qa~~~~~D---- 107 (329)
+.+-++++.++++.+++..+.|+.=.+|..++.++. +-.+.-.+.+..+..|.+..+.+..+.+.++ +.--
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 455678888999999998888887667777654443 3334444445566666665555443333332 2111
Q ss_pred hhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccchhHHHHHhHHHhHhhccccccC
Q 020208 108 FKLGHYMKIPPRSMFLVQFIGTVLAGTINLAVAWWLLNSIENICQDELLPPDSPWTCPGDRVFFDASVIWGLVGPKRIFG 187 (329)
Q Consensus 108 lK~G~yl~~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~si~wg~~gp~~lf~ 187 (329)
..+|+.-+.|..++...=+.|.++|.+...+.-+.++.+ +.| .|+...|.+. ++- .+.+.-
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~-------~~L----~fP~G~A~Ae----~l~--~g~~g~-- 141 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVE-------SKL----PYPEGVACAE----VLK--AGDKAR-- 141 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------CCC----CCCCHHHHHH----HHH--cccccc--
Confidence 123433344667777777788899998888754443221 112 2333332221 111 111100
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhcCCC----------CCccccChHHHHHHhccccccccchhhHHHHHHHHHHH
Q 020208 188 SQGNYPAMNWFFVGGALGPVLVWLLHKAFPKQ----------SWIPLINLPVLLGATGMMPPATAVNYNSWIIVGTIFNF 257 (329)
Q Consensus 188 ~g~~y~~~~~~~~iG~~~~i~~~l~~r~~P~~----------~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~ 257 (329)
.+..-..+..++.++.+..+. .- -|.+|.. .+.=.++..-.+.|.|++.+.. ....+++|.++.|
T Consensus 142 ~~~~~~~l~~g~~~s~~~~~~-~~-~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~~---v~~s~~~G~vlaW 216 (591)
T TIGR00733 142 NGTGAKPIAYGGILASIYAFL-GS-LRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGLN---IGFAMFLGGAIAW 216 (591)
T ss_pred chhhHHHHHHHHHHHHHHHHH-HH-hccCCchHHHHHhcCCcceEEEecccHHHHcCceeeChH---HHHHHHHHHHHHH
Confidence 011112344444554443333 11 1233321 0100122233457888886543 5568888888876
Q ss_pred HH-----Hhc-C-h----hh------hhhhhhhhhhhhHhhHHHHHHHHH
Q 020208 258 FI-----FRY-R-K----QW------WQRYNYILSAAMDAGVAFMAVILY 290 (329)
Q Consensus 258 ~~-----rr~-~-~----~w------~~ky~~~laagL~aG~~i~~vi~~ 290 (329)
.+ +++ . + .+ |.+|---++.|.+.++++..++..
T Consensus 217 gvl~P~l~~~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~ 266 (591)
T TIGR00733 217 GVAIPIYTAKMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKL 266 (591)
T ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 52 221 1 1 01 222221268999999999888754
No 9
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=39.77 E-value=1.2e+02 Score=23.42 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=31.5
Q ss_pred CCCCC------CCc-hHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHHHHhhhhh
Q 020208 1 MRRYE------DIP-HWWFYLMLVVTLVVSLVLCTFLKDQVQMPWWGLLFAGAMAFVFTLPISI 57 (329)
Q Consensus 1 m~~y~------~vP-~ww~~~~~v~~~~~~~~~~~~~~~~~~lp~~~~lla~~l~~i~~~~~g~ 57 (329)
||||| |++ +|.+..+.-.=++.. .++ -.|+-++.+|=++++.+++.-||
T Consensus 1 MRk~kf~lP~~DitG~wv~~lG~wfHIvar----LV~----~~P~mA~~LAeiia~~Lvl~GgY 56 (93)
T PF09679_consen 1 MRKFKFSLPDLDITGMWVFSLGFWFHIVAR----LVY----RQPEMAFFLAEIIAVGLVLSGGY 56 (93)
T ss_pred CCccccCCCCCCCccchhhHHHHHHHHHHH----HHH----hChHHHHHHHHHHHHHHhhhhhH
Confidence 77775 344 555555544444432 234 38999999999999888875443
No 10
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=34.20 E-value=1e+02 Score=28.22 Aligned_cols=46 Identities=9% Similarity=0.233 Sum_probs=26.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHHHHh
Q 020208 3 RYEDIPHWWFYLMLVVTLVVSLVLCTFLKDQVQMPWWGLLFAGAMAFVFTL 53 (329)
Q Consensus 3 ~y~~vP~ww~~~~~v~~~~~~~~~~~~~~~~~~lp~~~~lla~~l~~i~~~ 53 (329)
.++.++.| .+..++..+++.++.-.+. +-+|+.++++++++++.+.
T Consensus 23 ~dp~l~~~-ml~a~l~~~~v~v~ig~l~----~~~~~~~i~gi~~g~l~am 68 (224)
T PF13829_consen 23 EDPKLPWL-MLGAFLGPIAVFVLIGLLF----GSWWYWLIIGILLGLLAAM 68 (224)
T ss_pred HCcchHHH-HHHHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHHHHH
Confidence 35555544 4444555555554444444 3667777777777766543
No 11
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=34.02 E-value=1.6e+02 Score=24.04 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=13.9
Q ss_pred hcCCChHHHHHHHHHHHHH
Q 020208 113 YMKIPPRSMFLVQFIGTVL 131 (329)
Q Consensus 113 yl~~pPr~~f~~QiiGtiv 131 (329)
..|+-||+++++-+.+..+
T Consensus 64 lTHT~pRSv~WGli~slp~ 82 (114)
T PF06939_consen 64 LTHTLPRSVLWGLIPSLPL 82 (114)
T ss_pred CccCcchhhHHHHHHHHHH
Confidence 5677899999876665543
No 12
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=33.70 E-value=83 Score=27.64 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=25.5
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 020208 182 PKRIFGSQGNYPAMNWFFVGGALGPVLVWLLH 213 (329)
Q Consensus 182 p~~lf~~g~~y~~~~~~~~iG~~~~i~~~l~~ 213 (329)
.+|+||.+..+....-+.++|.+..++..++.
T Consensus 40 GrRilGdgKTwrG~i~gvl~g~l~g~i~~~l~ 71 (175)
T PF01864_consen 40 GRRILGDGKTWRGFIGGVLAGTLVGIIQGLLL 71 (175)
T ss_pred CCEecCCCCeEEeeeHHHHHHHHHHHHHHHHh
Confidence 38999999998877777788888887776654
No 13
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=28.81 E-value=4.8e+02 Score=24.31 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=60.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHHHHhhhhheeeeec-----CCchh--HHHHHHHHHHh
Q 020208 7 IPHWWFYLMLVVTLVVSLVLCTFLKDQVQMPWWGLLFAGAMAFVFTLPISIITATTN-----QTPGL--NIITEYVMGII 79 (329)
Q Consensus 7 vP~ww~~~~~v~~~~~~~~~~~~~~~~~~lp~~~~lla~~l~~i~~~~~g~~~g~t~-----~~p~~--~~isqli~g~~ 79 (329)
.|.|.+..++++.-+..+. -.. + +-.+ .-++..++++++.+........+. .+.-. -.-.-.+.+.+
T Consensus 84 ~~t~~fF~GLIlgSip~l~-k~~--~--~~~~-~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~lf~~G~ia~~AMI 157 (257)
T PF04018_consen 84 IPTYSFFFGLILGSIPFLY-KEI--K--KFSP-KSIIFFLLGAIIALLLSFLSSATQSSLSNPSYLYLFLAGAIAACAMI 157 (257)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHh--c--cCCH-HHHHHHHHHHHHHHHHHHccccchhccCcchHHHHHHHHHHHHHHHh
Confidence 6788888888777775321 111 1 2222 223444444444443333333322 22111 11123345567
Q ss_pred cCCCcchhHH--HHHHHHHHHHHHHHHHhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020208 80 YPGRPIANVC--FKVYGYMSVAQAVSFLNDFKLGHYMKIPPRSMFLVQFIGTVLAGTINLAVAWWLLNSIE 148 (329)
Q Consensus 80 ~pg~~~~n~~--f~~~~~~~~~qa~~~~~DlK~G~yl~~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~ 148 (329)
.||-.-..++ .+.|. ...++.+-..| ..-.....=.+|+++|.+.-.=++++++++++
T Consensus 158 lPGiSGS~iLlilG~Y~--~vl~ai~~~~~---------~~~~~L~~f~~G~~~Gi~~~skll~~ll~~~~ 217 (257)
T PF04018_consen 158 LPGISGSFILLILGLYE--PVLSAISDLID---------SNIPVLIPFGIGVVIGILLFSKLLSYLLKRYR 217 (257)
T ss_pred cCCCcHHHHHHHHHhHH--HHHHHHHHhhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8885433333 33333 33333332322 22223444467888888877777778777665
No 14
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=28.02 E-value=2.3e+02 Score=22.46 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCCCCCcccchhHHHHHhHHHhHhh
Q 020208 119 RSMFLVQFIGTVLAGTINLAVAWWLLNSIENICQDELLPPDSPWTCPGDRVFFDASVIWGLV 180 (329)
Q Consensus 119 r~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~si~wg~~ 180 (329)
|+|.+...-|.+++.++-+.+++.. .-++|-|-...+--...++|..+
T Consensus 15 kaQYl~~faGgll~~~il~~iLYi~--------------Gv~~~ici~~~~~~~~~lv~~~f 62 (96)
T PF13571_consen 15 KAQYLFYFAGGLLGLFILFVILYIA--------------GVNQWICIGFGVVSGSLLVWQTF 62 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------------ccchhhhHHHHHHHhhhhheeee
Confidence 6789999999999999888776632 12456665444444445556554
No 15
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=27.00 E-value=91 Score=28.53 Aligned_cols=51 Identities=18% Similarity=0.314 Sum_probs=22.8
Q ss_pred CCCCchHHHHHHHHH-HHHHHHHHHHHccCCCCCchHHHHHH--HHHHHHHHhh
Q 020208 4 YEDIPHWWFYLMLVV-TLVVSLVLCTFLKDQVQMPWWGLLFA--GAMAFVFTLP 54 (329)
Q Consensus 4 y~~vP~ww~~~~~v~-~~~~~~~~~~~~~~~~~lp~~~~lla--~~l~~i~~~~ 54 (329)
|+..|.|-|+.+.++ ..++++.+.-+|+......+|.+-++ -++++++++.
T Consensus 104 ye~~~~~~~l~~~~~~~~v~a~~lFPlWP~~~r~gv~YlS~~~lgll~~~~~la 157 (224)
T PF03839_consen 104 YEPSPLMQYLIGALLLVGVIAICLFPLWPRWMRQGVYYLSVGALGLLGLFFALA 157 (224)
T ss_pred ecCCcHHHHHHHHHHHHHHHHHHhhhcChHHHhheeehhHHHHHHHHHHHHHHH
Confidence 444454444443322 22223444455655444555544433 2345555543
No 16
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=26.45 E-value=3.7e+02 Score=22.40 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=22.8
Q ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020208 73 EYVMGIIYPGRPIANVCFKVYGYMSVAQAVSFLNDFKLG 111 (329)
Q Consensus 73 qli~g~~~pg~~~~n~~f~~~~~~~~~qa~~~~~DlK~G 111 (329)
.++.|.++|-+.+..-+-...-.+..+++.|.++|+-.|
T Consensus 113 ~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R~~~~g 151 (152)
T TIGR01248 113 AFLNPGATPIKLFPDWAQPLIAHQPISPAIEACADLAHG 151 (152)
T ss_pred HHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHHHHhcC
Confidence 355666666544444333333345677788888877554
No 17
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.33 E-value=47 Score=32.36 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=20.0
Q ss_pred CCCCc-hHHHHHHHHHHHHHHHHHHHHccCCCCCc
Q 020208 4 YEDIP-HWWFYLMLVVTLVVSLVLCTFLKDQVQMP 37 (329)
Q Consensus 4 y~~vP-~ww~~~~~v~~~~~~~~~~~~~~~~~~lp 37 (329)
|...| +|+.+.++++.+++++.++-+|+......
T Consensus 183 yep~~~~~~vl~~~fvl~tlaivLFPLWP~~mR~g 217 (372)
T KOG2927|consen 183 YEPRPLMWQVLGVLFVLVTLAIVLFPLWPRRMRQG 217 (372)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHhcccCcHHHhcc
Confidence 33344 66666666666666766667776433333
No 18
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=24.62 E-value=6.2e+02 Score=24.18 Aligned_cols=85 Identities=11% Similarity=0.211 Sum_probs=51.6
Q ss_pred hhheeeeecCCc----hhHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH-HHHHHHhhhhhhhhcCCChHHHHHHHHHHH
Q 020208 55 ISIITATTNQTP----GLNIITEYVMGIIYPGRPIANVCFKVYGYMSVA-QAVSFLNDFKLGHYMKIPPRSMFLVQFIGT 129 (329)
Q Consensus 55 ~g~~~g~t~~~p----~~~~isqli~g~~~pg~~~~n~~f~~~~~~~~~-qa~~~~~DlK~G~yl~~pPr~~f~~QiiGt 129 (329)
.|.++|.++.=| .+..+--.+.++...| ........++....+ .-++++.-.=+|+.+|++|=..+.+.+.|.
T Consensus 238 lgil~g~~~lIP~iG~~i~~ip~~i~al~~~~--~~~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ilisll~g~ 315 (355)
T COG0628 238 LGLLAGLLSLIPYIGPVIGLIPAVIIALLQGG--PWGALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILLSLLGGG 315 (355)
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhcceeccccccccCCCCHHHHHHHHHHHH
Confidence 344445555544 2444455555555444 222223344444554 446677888899999999999999999876
Q ss_pred ----HHHHHHHHHHHH
Q 020208 130 ----VLAGTINLAVAW 141 (329)
Q Consensus 130 ----ivg~~v~~~v~~ 141 (329)
++|.++.++++-
T Consensus 316 ~l~G~~G~ila~pl~~ 331 (355)
T COG0628 316 SLFGFVGLILAPPLAA 331 (355)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 455555555443
No 19
>PHA02132 hypothetical protein
Probab=23.02 E-value=1.5e+02 Score=22.05 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=22.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHH
Q 020208 114 MKIPPRSMFLVQFIGTVLAGTINLAVA 140 (329)
Q Consensus 114 l~~pPr~~f~~QiiGtivg~~v~~~v~ 140 (329)
-|.|.|+.-..|+.|++.|+-+-...+
T Consensus 41 sk~pa~sl~~vqiyg~ia~awlp~~~~ 67 (86)
T PHA02132 41 SKMPARSLCAVQVYGMIAGAWLPLAIY 67 (86)
T ss_pred ccCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 467899999999999999998766553
No 20
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=22.92 E-value=1.5e+02 Score=20.63 Aligned_cols=26 Identities=15% Similarity=0.475 Sum_probs=16.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHcc
Q 020208 5 EDIPHWWFYLMLVVTLVVSLVLCTFLK 31 (329)
Q Consensus 5 ~~vP~ww~~~~~v~~~~~~~~~~~~~~ 31 (329)
..+|.| |+..+.++++.+++-..+|+
T Consensus 18 nplP~w-w~~~f~~tivfa~~Y~~~yp 43 (51)
T PF14715_consen 18 NPLPRW-WLWLFYGTIVFAVGYLVLYP 43 (51)
T ss_pred CCCCHH-HHHHHHHHHHHHHHHHHHHh
Confidence 467887 45566677777665554554
No 21
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=22.86 E-value=1.5e+02 Score=25.45 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=23.9
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhhheeeeec
Q 020208 33 QVQMPWWGLLFAGAMAFVFTLPISIITATTN 63 (329)
Q Consensus 33 ~~~lp~~~~lla~~l~~i~~~~~g~~~g~t~ 63 (329)
..++|.|..+++-.+.|.+.+ .|+.+|+-.
T Consensus 91 ~~dvP~~~~~~~S~~~Fg~gl-lGisYGilS 120 (153)
T PF11947_consen 91 IVDVPPWAVLLVSLVFFGLGL-LGISYGILS 120 (153)
T ss_pred ccccCchHHHHHHHHHHHHHH-Hhhhhhhcc
Confidence 578999999999888887777 687777643
No 22
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=21.85 E-value=84 Score=25.68 Aligned_cols=25 Identities=24% Similarity=0.631 Sum_probs=22.3
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHH
Q 020208 110 LGHYMKIPPRSMFLVQFIGTVLAGT 134 (329)
Q Consensus 110 ~G~yl~~pPr~~f~~QiiGtivg~~ 134 (329)
.+..+|.++|+.+.+..+|++++++
T Consensus 96 ~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 96 IASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999875
No 23
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.99 E-value=1.3e+02 Score=22.53 Aligned_cols=45 Identities=7% Similarity=0.239 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHHHHhh
Q 020208 9 HWWFYLMLVVTLVVSLVLCTFLKDQVQMPWWGLLFAGAMAFVFTLP 54 (329)
Q Consensus 9 ~ww~~~~~v~~~~~~~~~~~~~~~~~~lp~~~~lla~~l~~i~~~~ 54 (329)
+..+-..++++.+++++.-++. .++....+..+.+++++++.++|
T Consensus 10 e~l~~~il~~~~iisfi~Gy~~-q~~~~~~~~~~~g~~~~~lv~vP 54 (76)
T PF06645_consen 10 EKLMQYILIISAIISFIVGYIT-QSFSYTFYIYGAGVVLTLLVVVP 54 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhheeC
Confidence 3444455555555555444333 35677778888888888887776
No 24
>PF14150 YesK: YesK-like protein
Probab=20.89 E-value=2.6e+02 Score=21.37 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhcChhhhhhhhhhhh
Q 020208 248 WIIVGTIFNFFIFRYRKQWWQRYNYILS 275 (329)
Q Consensus 248 ~~~vG~~~~~~~rr~~~~w~~ky~~~la 275 (329)
.+++.+...++.|||+|+.- +.++++
T Consensus 8 ~~ii~f~~S~~lr~r~p~k~--~~~il~ 33 (81)
T PF14150_consen 8 TFIIVFGVSVLLRKRFPKKQ--PEIILP 33 (81)
T ss_pred HHHHHHHHHHHHHHhCCCcc--hhHHHH
Confidence 46666777788999988865 444444
No 25
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=20.51 E-value=1.4e+02 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.314 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 020208 118 PRSMFLVQFIGT-VLAGTINLAVAWWLLN 145 (329)
Q Consensus 118 Pr~~f~~QiiGt-ivg~~v~~~v~~~~~~ 145 (329)
...-..+|++|| ++|+++++.++.+++.
T Consensus 89 ~~~a~lGEviGTGiIGal~sypva~~~~g 117 (150)
T PF09512_consen 89 LWAAALGEVIGTGIIGALLSYPVAKLFMG 117 (150)
T ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 355678999998 8899999999988764
No 26
>PF11292 DUF3093: Protein of unknown function (DUF3093); InterPro: IPR021443 This family of proteins with unknown function appears to be restricted to Actinobacteria. Some members are annotated as alanine rich membrane proteins however this cannot be confirmed.
Probab=20.43 E-value=2.6e+02 Score=23.75 Aligned_cols=16 Identities=25% Similarity=0.943 Sum_probs=12.5
Q ss_pred CchHHHHHHHHHHHHH
Q 020208 7 IPHWWFYLMLVVTLVV 22 (329)
Q Consensus 7 vP~ww~~~~~v~~~~~ 22 (329)
+|.|||+.+..+...+
T Consensus 9 ~p~~wW~~~~~~~~~~ 24 (143)
T PF11292_consen 9 VPWWWWLAAAAVAALL 24 (143)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8899999888884444
Done!