Query 020208
Match_columns 329
No_of_seqs 121 out of 1154
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 13:26:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020208.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020208hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 10.8 94 0.0069 17.5 2.5 15 38-52 18-32 (37)
2 d1j4na_ f.19.1.1 (A:) Aquapori 9.0 4.1E+02 0.03 20.6 7.4 17 123-139 101-117 (249)
3 d1ymga1 f.19.1.1 (A:6-239) Aqu 8.8 1.6E+02 0.011 23.3 4.4 17 123-139 86-102 (234)
4 d2vv5a3 f.34.1.1 (A:27-112) Me 8.0 1.1E+02 0.0079 20.1 2.5 20 275-294 67-86 (86)
5 d1zava1 d.58.62.1 (A:1-177) Ri 7.1 1.8E+02 0.013 21.8 3.9 29 109-137 127-155 (177)
6 d1h2sa_ f.13.1.1 (A:) Sensory 6.3 2E+02 0.014 22.6 3.8 32 248-281 14-45 (225)
7 d1q90m_ f.23.25.1 (M:) PetM su 5.4 2.5E+02 0.018 15.1 2.6 12 276-287 2-13 (34)
8 d1ansa_ g.11.1.1 (A:) Neurotox 4.3 2.2E+02 0.016 14.4 1.7 9 308-316 15-23 (27)
9 d1xioa_ f.13.1.1 (A:) Sensory 4.2 3.7E+02 0.027 20.7 4.1 35 248-284 14-48 (226)
10 d1uaza_ f.13.1.1 (A:) Archaerh 3.4 4.5E+02 0.033 20.4 4.0 34 248-283 25-59 (236)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.77 E-value=94 Score=17.46 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHH
Q 020208 38 WWGLLFAGAMAFVFT 52 (329)
Q Consensus 38 ~~~~lla~~l~~i~~ 52 (329)
+|++++-.+++.+|+
T Consensus 18 y~GlLlifvl~vLFs 32 (37)
T d2axtl1 18 YLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356666666666554
No 2
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.96 E-value=4.1e+02 Score=20.63 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020208 123 LVQFIGTVLAGTINLAV 139 (329)
Q Consensus 123 ~~QiiGtivg~~v~~~v 139 (329)
.+|++|.++|+.+...+
T Consensus 101 ~aQ~lGa~~g~~~~~~~ 117 (249)
T d1j4na_ 101 IAQCVGAIVATAILSGI 117 (249)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHhhheee
Confidence 68888888888766554
No 3
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.79 E-value=1.6e+02 Score=23.25 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020208 123 LVQFIGTVLAGTINLAV 139 (329)
Q Consensus 123 ~~QiiGtivg~~v~~~v 139 (329)
.+|++|.++|+.+.+.+
T Consensus 86 ~aQ~lGa~~ga~l~~~~ 102 (234)
T d1ymga1 86 VAQLLGAVAGAAVLYSV 102 (234)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 78999999999877654
No 4
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=8.03 E-value=1.1e+02 Score=20.06 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=15.8
Q ss_pred hhhhHhhHHHHHHHHHHHHh
Q 020208 275 SAAMDAGVAFMAVILYFSVG 294 (329)
Q Consensus 275 aagL~aG~~i~~vi~~fa~~ 294 (329)
-++|.++.++.|+.+.|++|
T Consensus 67 ~t~l~a~~G~~gvaiGfa~Q 86 (86)
T d2vv5a3 67 TASVIAVLGAAGLVVGLALQ 86 (86)
T ss_dssp STTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34678888888998888876
No 5
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=7.12 E-value=1.8e+02 Score=21.76 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=23.1
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHHHHHHH
Q 020208 109 KLGHYMKIPPRSMFLVQFIGTVLAGTINL 137 (329)
Q Consensus 109 K~G~yl~~pPr~~f~~QiiGtivg~~v~~ 137 (329)
++-.+-++|.|...++|++|.+-+..-+.
T Consensus 127 ~i~~la~LPs~eel~a~l~~~L~ap~~~l 155 (177)
T d1zava1 127 EVENIAKLPSKEELYAMLVGRVKAPITGL 155 (177)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhHHHHH
Confidence 34467899999999999999988765443
No 6
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=6.31 E-value=2e+02 Score=22.55 Aligned_cols=32 Identities=25% Similarity=0.148 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhcChhhhhhhhhhhhhhhHhh
Q 020208 248 WIIVGTIFNFFIFRYRKQWWQRYNYILSAAMDAG 281 (329)
Q Consensus 248 ~~~vG~~~~~~~rr~~~~w~~ky~~~laagL~aG 281 (329)
.|..+.++-++.+|+.+..++++.++. + ++++
T Consensus 14 ~m~~~tv~F~~~~~~~~~~~r~~~~~~-~-~It~ 45 (225)
T d1h2sa_ 14 GMLVGTLAFAWAGRDAGSGERRYYVTL-V-GISG 45 (225)
T ss_dssp HHHHHHHHHHHHTTTCCTTTHHHHHHH-H-HHHH
T ss_pred HHHHHHHHHHHHHcCCCCccchhhHHH-H-HHHH
Confidence 566676665667676666656665543 3 3554
No 7
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.44 E-value=2.5e+02 Score=15.11 Aligned_cols=12 Identities=42% Similarity=0.437 Sum_probs=8.2
Q ss_pred hhhHhhHHHHHH
Q 020208 276 AAMDAGVAFMAV 287 (329)
Q Consensus 276 agL~aG~~i~~v 287 (329)
|++++|+++.-+
T Consensus 2 a~fiagta~tmi 13 (34)
T d1q90m_ 2 AEFIAGTALTMV 13 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred CceecchhHHHH
Confidence 577888876544
No 8
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=4.29 E-value=2.2e+02 Score=14.40 Aligned_cols=9 Identities=22% Similarity=0.744 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q 020208 308 EHCDLATCP 316 (329)
Q Consensus 308 ~~~~~~~~~ 316 (329)
..|....|.
T Consensus 15 qncypegcs 23 (27)
T d1ansa_ 15 QNCYPEGCS 23 (27)
T ss_dssp CSSCSSCSS
T ss_pred cccccCccc
Confidence 344444444
No 9
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=4.16 E-value=3.7e+02 Score=20.68 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhcChhhhhhhhhhhhhhhHhhHHH
Q 020208 248 WIIVGTIFNFFIFRYRKQWWQRYNYILSAAMDAGVAF 284 (329)
Q Consensus 248 ~~~vG~~~~~~~rr~~~~w~~ky~~~laagL~aG~~i 284 (329)
.|.++.++-...+|+.+..++++ +.+ ++++++.+-
T Consensus 14 ~m~~~~~~f~~~~~~~~~~~r~~-~~~-~~~I~~iA~ 48 (226)
T d1xioa_ 14 GMTIGALHFWSLSRNPRGVPQYE-YLV-AMFIPIWSG 48 (226)
T ss_dssp HHHHHHHHHHHHHTSCTTCCHHH-HHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCccchhh-HHH-HHHHHHHHH
Confidence 56666666555666655555444 443 567776553
No 10
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=3.37 E-value=4.5e+02 Score=20.42 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhcC-hhhhhhhhhhhhhhhHhhHH
Q 020208 248 WIIVGTIFNFFIFRYR-KQWWQRYNYILSAAMDAGVA 283 (329)
Q Consensus 248 ~~~vG~~~~~~~rr~~-~~w~~ky~~~laagL~aG~~ 283 (329)
.|..+.++-++.|+|- +++++.+ +. -+++++|.+
T Consensus 25 ~m~~~tv~f~~~~~~~~~~~~r~~-~~-~~~lIt~IA 59 (236)
T d1uaza_ 25 LMLIGTFYFIVKGWGVTDKEAREY-YS-ITILVPGIA 59 (236)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHH-HH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCcceee-ee-HHHHHHHHH
Confidence 3555555544445553 3443433 33 355777654
Done!