Query 020210
Match_columns 329
No_of_seqs 210 out of 1182
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:55:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.4 1.8E-13 3.9E-18 99.5 6.3 52 129-180 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.4 5.3E-13 1.2E-17 97.8 6.6 57 128-184 3-60 (60)
3 smart00353 HLH helix loop heli 99.3 3.2E-12 6.8E-17 91.8 6.8 51 134-184 1-52 (53)
4 KOG1318 Helix loop helix trans 99.0 3.8E-09 8.2E-14 104.9 11.3 64 123-186 227-292 (411)
5 KOG1319 bHLHZip transcription 98.7 3.5E-08 7.5E-13 88.3 7.4 68 128-195 61-133 (229)
6 cd04897 ACT_ACR_3 ACT domain-c 98.6 5.7E-07 1.2E-11 70.0 10.3 69 252-320 3-74 (75)
7 KOG3960 Myogenic helix-loop-he 98.4 5.1E-07 1.1E-11 84.2 7.1 65 128-193 117-182 (284)
8 KOG2483 Upstream transcription 98.3 3.4E-06 7.4E-11 78.7 9.1 65 129-193 59-124 (232)
9 cd04895 ACT_ACR_1 ACT domain-c 98.3 9.1E-06 2E-10 62.8 9.8 55 252-306 3-57 (72)
10 cd04896 ACT_ACR-like_3 ACT dom 98.2 1.2E-05 2.5E-10 62.7 9.9 67 252-319 2-73 (75)
11 KOG4304 Transcriptional repres 98.2 1.1E-06 2.5E-11 82.8 4.6 59 126-184 29-93 (250)
12 cd04927 ACT_ACR-like_2 Second 98.2 1.5E-05 3.2E-10 61.8 9.2 49 251-299 1-50 (76)
13 KOG3561 Aryl-hydrocarbon recep 98.1 2.5E-06 5.4E-11 91.3 5.3 53 130-182 21-75 (803)
14 cd04900 ACT_UUR-like_1 ACT dom 98.1 6.6E-05 1.4E-09 57.2 10.9 53 252-304 3-56 (73)
15 cd04925 ACT_ACR_2 ACT domain-c 98.0 0.0001 2.2E-09 56.6 10.8 49 252-300 2-50 (74)
16 KOG4029 Transcription factor H 98.0 1.7E-05 3.6E-10 73.7 7.5 64 127-190 107-172 (228)
17 KOG2588 Predicted DNA-binding 98.0 9.4E-06 2E-10 87.4 5.5 65 127-192 274-338 (953)
18 cd04928 ACT_TyrKc Uncharacteri 97.8 0.00028 6.1E-09 54.0 9.6 64 252-318 3-67 (68)
19 KOG4447 Transcription factor T 97.7 3.7E-05 8.1E-10 67.0 4.5 62 123-184 72-133 (173)
20 cd04899 ACT_ACR-UUR-like_2 C-t 97.7 0.00064 1.4E-08 50.4 10.7 65 252-318 2-66 (70)
21 cd04926 ACT_ACR_4 C-terminal 97.6 0.00083 1.8E-08 51.2 9.5 66 252-319 3-68 (72)
22 PLN03217 transcription factor 97.5 0.00017 3.6E-09 57.2 5.4 55 141-195 19-77 (93)
23 PF13740 ACT_6: ACT domain; PD 97.5 0.00092 2E-08 51.4 9.2 68 250-321 2-69 (76)
24 KOG0561 bHLH transcription fac 97.5 0.00011 2.3E-09 70.5 4.6 59 128-186 59-117 (373)
25 cd04869 ACT_GcvR_2 ACT domains 97.2 0.0057 1.2E-07 46.8 10.2 66 253-321 2-73 (81)
26 cd04893 ACT_GcvR_1 ACT domains 97.2 0.0057 1.2E-07 47.2 10.0 66 251-320 2-67 (77)
27 PRK05007 PII uridylyl-transfer 97.1 0.0027 5.9E-08 69.8 11.0 70 248-318 806-878 (884)
28 PF01842 ACT: ACT domain; Int 97.1 0.0026 5.6E-08 46.1 7.4 63 252-317 2-64 (66)
29 PF13291 ACT_4: ACT domain; PD 97.1 0.0019 4.1E-08 49.6 6.9 51 251-301 7-59 (80)
30 PRK00275 glnD PII uridylyl-tra 97.1 0.005 1.1E-07 67.8 12.7 80 240-319 802-886 (895)
31 cd04873 ACT_UUR-ACR-like ACT d 97.1 0.013 2.8E-07 42.9 10.8 51 252-302 2-52 (70)
32 PRK00194 hypothetical protein; 97.0 0.0046 1E-07 48.6 8.5 70 250-321 3-72 (90)
33 cd04872 ACT_1ZPV ACT domain pr 97.0 0.0041 8.9E-08 48.9 8.1 69 251-321 2-70 (88)
34 cd04870 ACT_PSP_1 CT domains f 97.0 0.0075 1.6E-07 46.0 9.1 67 252-321 1-67 (75)
35 PRK05092 PII uridylyl-transfer 96.9 0.0082 1.8E-07 66.4 12.1 81 240-320 831-916 (931)
36 cd04875 ACT_F4HF-DF N-terminal 96.9 0.011 2.3E-07 44.8 9.1 70 252-321 1-70 (74)
37 PRK01759 glnD PII uridylyl-tra 96.8 0.0065 1.4E-07 66.6 10.5 69 249-317 782-852 (854)
38 PRK04374 PII uridylyl-transfer 96.8 0.011 2.4E-07 65.0 11.9 79 240-318 784-866 (869)
39 cd04887 ACT_MalLac-Enz ACT_Mal 96.7 0.0092 2E-07 44.7 7.8 61 253-316 2-63 (74)
40 TIGR01693 UTase_glnD [Protein- 96.5 0.02 4.2E-07 62.8 11.2 72 248-319 666-741 (850)
41 cd04886 ACT_ThrD-II-like C-ter 96.4 0.018 3.9E-07 41.9 7.5 47 253-299 1-52 (73)
42 PRK03381 PII uridylyl-transfer 96.4 0.024 5.2E-07 61.6 11.4 79 240-319 588-667 (774)
43 KOG3910 Helix loop helix trans 96.4 0.0025 5.4E-08 64.9 3.4 61 127-187 524-586 (632)
44 TIGR01693 UTase_glnD [Protein- 96.4 0.02 4.3E-07 62.8 10.7 77 240-316 767-847 (850)
45 PRK03381 PII uridylyl-transfer 96.4 0.025 5.4E-07 61.5 11.2 66 249-317 706-771 (774)
46 PRK03059 PII uridylyl-transfer 96.3 0.018 3.9E-07 63.2 9.7 57 241-297 775-833 (856)
47 cd04888 ACT_PheB-BS C-terminal 96.0 0.031 6.6E-07 41.9 7.0 63 252-316 2-65 (76)
48 PRK01759 glnD PII uridylyl-tra 96.0 0.055 1.2E-06 59.5 11.4 79 239-318 664-748 (854)
49 COG2844 GlnD UTP:GlnB (protein 95.9 0.035 7.6E-07 60.0 9.3 78 239-318 778-857 (867)
50 PRK05007 PII uridylyl-transfer 95.9 0.065 1.4E-06 59.2 11.7 79 239-318 688-772 (884)
51 PRK00275 glnD PII uridylyl-tra 95.7 0.081 1.8E-06 58.5 11.2 70 249-318 703-777 (895)
52 PRK05092 PII uridylyl-transfer 95.7 0.091 2E-06 58.3 11.6 80 239-318 719-804 (931)
53 PRK03059 PII uridylyl-transfer 95.6 0.085 1.8E-06 58.0 10.8 69 249-318 677-749 (856)
54 cd04876 ACT_RelA-SpoT ACT dom 95.5 0.065 1.4E-06 37.4 6.7 48 253-300 1-49 (71)
55 PRK04435 hypothetical protein; 95.4 0.089 1.9E-06 45.8 8.4 68 247-316 66-134 (147)
56 cd04877 ACT_TyrR N-terminal AC 95.3 0.046 1E-06 41.5 5.7 46 252-300 2-47 (74)
57 KOG3898 Transcription factor N 95.3 0.024 5.2E-07 53.8 4.9 58 126-183 69-127 (254)
58 PRK04374 PII uridylyl-transfer 95.0 0.14 3.1E-06 56.4 10.3 70 249-318 689-759 (869)
59 cd04881 ACT_HSDH-Hom ACT_HSDH_ 95.0 0.089 1.9E-06 38.8 6.2 49 251-299 1-51 (79)
60 cd04878 ACT_AHAS N-terminal AC 94.8 0.17 3.7E-06 36.5 7.2 60 252-315 2-63 (72)
61 cd02116 ACT ACT domains are co 94.6 0.24 5.2E-06 32.5 7.1 35 253-287 1-35 (60)
62 PRK08577 hypothetical protein; 94.5 0.37 8.1E-06 41.0 9.6 65 249-316 55-122 (136)
63 KOG3560 Aryl-hydrocarbon recep 94.4 0.021 4.5E-07 59.0 1.9 44 134-177 30-75 (712)
64 cd04880 ACT_AAAH-PDT-like ACT 94.4 0.4 8.6E-06 36.2 8.6 47 254-300 3-50 (75)
65 PRK06027 purU formyltetrahydro 94.4 0.38 8.3E-06 46.3 10.5 72 249-322 5-78 (286)
66 cd04884 ACT_CBS C-terminal ACT 94.2 0.35 7.5E-06 36.2 7.8 61 253-316 2-65 (72)
67 PRK13011 formyltetrahydrofolat 94.1 0.42 9.1E-06 46.1 10.2 72 250-322 7-78 (286)
68 cd04905 ACT_CM-PDT C-terminal 94.0 0.69 1.5E-05 35.4 9.3 63 252-317 3-66 (80)
69 cd04894 ACT_ACR-like_1 ACT dom 93.9 0.4 8.7E-06 36.3 7.4 66 252-317 2-67 (69)
70 cd04874 ACT_Af1403 N-terminal 93.8 0.53 1.1E-05 34.0 8.1 60 252-316 2-62 (72)
71 PRK07334 threonine dehydratase 93.7 0.27 5.9E-06 49.3 8.4 51 251-301 327-382 (403)
72 cd04882 ACT_Bt0572_2 C-termina 93.6 0.4 8.8E-06 34.4 7.0 56 253-316 2-59 (65)
73 PRK13010 purU formyltetrahydro 93.5 0.48 1E-05 45.9 9.3 72 250-322 9-82 (289)
74 TIGR00655 PurU formyltetrahydr 93.3 0.63 1.4E-05 44.8 9.7 68 252-321 2-72 (280)
75 cd04879 ACT_3PGDH-like ACT_3PG 93.3 0.71 1.5E-05 33.0 7.9 58 253-316 2-61 (71)
76 cd04903 ACT_LSD C-terminal ACT 92.7 0.73 1.6E-05 33.1 7.3 58 253-316 2-61 (71)
77 cd04883 ACT_AcuB C-terminal AC 92.4 1.5 3.2E-05 32.2 8.7 59 252-316 3-63 (72)
78 cd04909 ACT_PDH-BS C-terminal 92.2 1.1 2.4E-05 32.8 7.8 35 252-286 3-37 (69)
79 cd04885 ACT_ThrD-I Tandem C-te 92.0 0.89 1.9E-05 33.8 7.2 59 254-316 2-61 (68)
80 cd04908 ACT_Bt0572_1 N-termina 91.8 1.6 3.4E-05 32.1 8.3 45 252-298 3-47 (66)
81 cd04889 ACT_PDH-BS-like C-term 91.7 0.74 1.6E-05 32.6 6.1 45 253-297 1-46 (56)
82 PRK11895 ilvH acetolactate syn 91.7 0.77 1.7E-05 40.8 7.4 64 252-319 4-69 (161)
83 cd04904 ACT_AAAH ACT domain of 91.6 1.3 2.9E-05 33.7 7.8 59 254-317 4-63 (74)
84 TIGR00119 acolac_sm acetolacta 91.3 0.83 1.8E-05 40.4 7.2 64 252-319 3-68 (157)
85 PRK11152 ilvM acetolactate syn 91.0 1.3 2.8E-05 34.6 7.2 63 252-319 5-69 (76)
86 COG2844 GlnD UTP:GlnB (protein 91.0 1.4 3E-05 48.2 9.8 83 240-323 674-757 (867)
87 PRK11589 gcvR glycine cleavage 90.5 2.1 4.6E-05 39.0 9.3 71 251-324 96-172 (190)
88 KOG3558 Hypoxia-inducible fact 90.4 0.56 1.2E-05 50.1 6.2 46 132-177 49-96 (768)
89 CHL00100 ilvH acetohydroxyacid 90.4 1.4 3E-05 39.7 7.9 69 252-322 4-72 (174)
90 PRK13562 acetolactate synthase 90.3 0.96 2.1E-05 36.1 6.0 65 252-319 4-70 (84)
91 cd04931 ACT_PAH ACT domain of 90.2 2.6 5.6E-05 33.8 8.6 63 251-317 15-78 (90)
92 PRK06737 acetolactate synthase 89.7 1.3 2.8E-05 34.6 6.3 63 252-318 4-68 (76)
93 cd04929 ACT_TPH ACT domain of 89.5 3.3 7.2E-05 31.9 8.4 58 255-317 5-63 (74)
94 PF13710 ACT_5: ACT domain; PD 89.2 0.79 1.7E-05 34.2 4.6 56 259-318 1-58 (63)
95 cd04901 ACT_3PGDH C-terminal A 89.0 0.42 9.1E-06 34.9 2.9 47 253-299 2-48 (69)
96 PRK10872 relA (p)ppGpp synthet 88.7 1.4 3E-05 48.0 7.7 52 251-302 667-720 (743)
97 PRK11589 gcvR glycine cleavage 88.6 1.3 2.8E-05 40.3 6.4 67 249-319 7-73 (190)
98 COG3830 ACT domain-containing 88.1 1.1 2.4E-05 36.2 5.0 71 250-322 3-73 (90)
99 cd04906 ACT_ThrD-I_1 First of 88.0 4 8.6E-05 31.8 8.1 61 251-316 2-64 (85)
100 COG0788 PurU Formyltetrahydrof 87.7 3.2 6.9E-05 40.0 8.6 72 249-320 6-77 (287)
101 KOG3559 Transcriptional regula 87.5 0.54 1.2E-05 47.5 3.5 44 135-178 7-52 (598)
102 PRK11092 bifunctional (p)ppGpp 86.5 2.1 4.6E-05 46.4 7.5 51 251-301 627-678 (702)
103 PRK08178 acetolactate synthase 86.4 3.3 7.2E-05 33.8 6.9 66 249-319 7-74 (96)
104 TIGR00691 spoT_relA (p)ppGpp s 85.7 2.4 5.2E-05 45.7 7.5 51 251-301 611-662 (683)
105 COG4492 PheB ACT domain-contai 85.6 4.3 9.4E-05 35.2 7.5 67 249-317 71-138 (150)
106 PF05088 Bac_GDH: Bacterial NA 85.2 5.8 0.00013 46.5 10.6 73 249-322 488-565 (1528)
107 PRK08198 threonine dehydratase 84.1 5.6 0.00012 39.8 8.9 66 248-316 325-395 (404)
108 cd04930 ACT_TH ACT domain of t 83.7 6.4 0.00014 32.9 7.7 61 252-317 43-104 (115)
109 cd04902 ACT_3PGDH-xct C-termin 83.1 3.3 7.2E-05 30.2 5.2 58 253-316 2-61 (73)
110 KOG4395 Transcription factor A 82.6 2.4 5.3E-05 40.3 5.2 57 128-184 173-230 (285)
111 TIGR01127 ilvA_1Cterm threonin 82.1 7.9 0.00017 38.3 8.9 67 247-316 302-373 (380)
112 KOG4447 Transcription factor T 79.9 2.4 5.3E-05 37.4 3.9 46 136-181 29-74 (173)
113 PRK06382 threonine dehydratase 79.6 8.6 0.00019 38.6 8.4 66 248-316 328-398 (406)
114 PRK08526 threonine dehydratase 76.3 12 0.00026 37.8 8.3 66 248-316 324-394 (403)
115 PRK00227 glnD PII uridylyl-tra 74.7 17 0.00037 39.5 9.4 69 248-318 544-613 (693)
116 cd04922 ACT_AKi-HSDH-ThrA_2 AC 73.6 24 0.00052 25.0 7.3 34 252-285 3-39 (66)
117 PRK11899 prephenate dehydratas 71.8 34 0.00073 33.0 9.8 64 252-318 196-260 (279)
118 cd04933 ACT_AK1-AT_1 ACT domai 71.0 39 0.00085 26.2 8.3 64 252-322 3-69 (78)
119 KOG3582 Mlx interactors and re 70.6 2.8 6E-05 45.0 2.2 67 128-194 650-719 (856)
120 COG2061 ACT-domain-containing 68.7 25 0.00053 31.4 7.3 49 251-299 6-57 (170)
121 cd04919 ACT_AK-Hom3_2 ACT doma 68.2 38 0.00083 24.1 7.4 36 252-287 3-41 (66)
122 PF02120 Flg_hook: Flagellar h 66.2 25 0.00054 26.8 6.3 48 239-286 26-79 (85)
123 cd04892 ACT_AK-like_2 ACT doma 64.0 44 0.00095 22.8 6.9 34 252-285 2-38 (65)
124 KOG4005 Transcription factor X 62.4 23 0.00051 33.6 6.3 20 131-150 61-81 (292)
125 cd04890 ACT_AK-like_1 ACT doma 61.8 54 0.0012 23.2 7.8 25 259-283 12-36 (62)
126 PRK11898 prephenate dehydratas 61.3 46 0.001 32.0 8.5 63 252-317 198-262 (283)
127 COG0317 SpoT Guanosine polypho 61.1 24 0.00052 38.4 7.0 61 240-300 612-678 (701)
128 TIGR02079 THD1 threonine dehyd 59.9 46 0.00099 33.6 8.5 66 248-316 323-390 (409)
129 cd04916 ACT_AKiii-YclM-BS_2 AC 59.2 60 0.0013 22.9 7.3 34 252-285 3-39 (66)
130 COG0077 PheA Prephenate dehydr 58.6 55 0.0012 31.7 8.4 64 252-318 196-260 (279)
131 cd04932 ACT_AKiii-LysC-EC_1 AC 57.3 84 0.0018 23.9 8.3 56 258-320 12-67 (75)
132 cd04868 ACT_AK-like ACT domain 57.1 46 0.001 22.2 5.8 26 260-285 13-38 (60)
133 COG3978 Acetolactate synthase 56.3 76 0.0016 25.3 7.3 64 252-320 5-70 (86)
134 PRK15385 magnesium transport p 55.4 1E+02 0.0022 29.0 9.3 49 249-297 141-193 (225)
135 cd04937 ACT_AKi-DapG-BS_2 ACT 55.1 76 0.0016 22.9 6.9 27 253-279 4-33 (64)
136 PRK10622 pheA bifunctional cho 54.2 67 0.0014 32.4 8.5 61 255-318 302-363 (386)
137 cd04898 ACT_ACR-like_4 ACT dom 52.6 33 0.00071 27.0 4.7 51 253-303 3-55 (77)
138 PF02344 Myc-LZ: Myc leucine z 52.5 16 0.00034 24.0 2.4 18 136-153 12-29 (32)
139 cd04934 ACT_AK-Hom3_1 CT domai 52.1 92 0.002 23.6 7.2 32 252-283 3-37 (73)
140 cd04912 ACT_AKiii-LysC-EC-like 51.1 84 0.0018 23.5 6.8 25 258-282 12-36 (75)
141 cd04924 ACT_AK-Arch_2 ACT doma 51.1 83 0.0018 22.0 7.2 34 252-285 3-39 (66)
142 COG0440 IlvH Acetolactate synt 49.4 48 0.001 29.7 5.9 66 252-321 6-73 (163)
143 PRK08639 threonine dehydratase 49.1 86 0.0019 31.7 8.5 66 248-316 334-401 (420)
144 cd04907 ACT_ThrD-I_2 Second of 48.6 1.3E+02 0.0027 23.4 7.7 59 251-316 2-63 (81)
145 TIGR01268 Phe4hydrox_tetr phen 48.3 94 0.002 32.0 8.5 49 252-300 18-67 (436)
146 PRK00227 glnD PII uridylyl-tra 47.5 30 0.00065 37.6 5.1 59 251-318 632-690 (693)
147 PRK09224 threonine dehydratase 46.6 1.3E+02 0.0029 31.2 9.6 65 248-316 326-391 (504)
148 PLN02317 arogenate dehydratase 46.3 98 0.0021 31.4 8.2 48 253-300 286-348 (382)
149 cd04935 ACT_AKiii-DAPDC_1 ACT 45.7 1.3E+02 0.0029 22.8 7.5 26 258-283 12-37 (75)
150 PF13840 ACT_7: ACT domain ; P 44.8 34 0.00074 25.2 3.7 33 250-282 6-42 (65)
151 COG4747 ACT domain-containing 44.5 75 0.0016 27.3 6.0 39 252-290 5-43 (142)
152 PRK12483 threonine dehydratase 44.2 1.4E+02 0.0031 31.3 9.4 64 248-315 343-407 (521)
153 cd04918 ACT_AK1-AT_2 ACT domai 44.1 87 0.0019 22.7 5.8 31 259-289 12-42 (65)
154 TIGR01270 Trp_5_monoox tryptop 43.0 91 0.002 32.4 7.5 48 252-299 33-82 (464)
155 COG1707 ACT domain-containing 42.2 1.1E+02 0.0025 27.8 7.1 60 252-314 4-63 (218)
156 TIGR01124 ilvA_2Cterm threonin 41.8 1.3E+02 0.0028 31.4 8.6 64 248-316 323-387 (499)
157 PRK00907 hypothetical protein; 39.1 97 0.0021 25.0 5.7 63 250-315 17-83 (92)
158 cd04913 ACT_AKii-LysC-BS-like_ 37.3 1.5E+02 0.0032 20.9 6.6 26 258-283 10-35 (75)
159 cd04915 ACT_AK-Ectoine_2 ACT d 36.7 1.1E+02 0.0024 22.4 5.4 28 260-287 14-41 (66)
160 cd04923 ACT_AK-LysC-DapG-like_ 36.7 1.4E+02 0.003 20.5 6.7 25 259-283 12-36 (63)
161 PF14689 SPOB_a: Sensor_kinase 36.5 93 0.002 22.9 4.9 42 136-186 15-56 (62)
162 cd04936 ACT_AKii-LysC-BS-like_ 35.0 1.5E+02 0.0032 20.3 6.6 25 259-283 12-36 (63)
163 COG2716 GcvR Glycine cleavage 33.7 1.7E+02 0.0037 26.5 6.9 69 251-322 93-167 (176)
164 PF09849 DUF2076: Uncharacteri 33.5 1E+02 0.0023 29.3 5.9 48 141-193 6-74 (247)
165 TIGR00656 asp_kin_monofn aspar 33.4 2.1E+02 0.0046 28.4 8.4 41 244-284 254-297 (401)
166 cd04871 ACT_PSP_2 ACT domains 32.9 29 0.00063 27.1 1.7 66 253-322 2-77 (84)
167 PRK02047 hypothetical protein; 31.4 1.4E+02 0.0031 23.8 5.5 63 250-315 16-82 (91)
168 COG2716 GcvR Glycine cleavage 30.8 49 0.0011 29.9 3.0 62 251-316 6-67 (176)
169 PLN02550 threonine dehydratase 30.6 2.1E+02 0.0044 30.8 8.1 48 250-299 417-465 (591)
170 cd04921 ACT_AKi-HSDH-ThrA-like 30.5 2.1E+02 0.0045 21.1 6.1 29 259-287 13-41 (80)
171 PLN02705 beta-amylase 29.8 2.1E+02 0.0045 31.0 7.7 25 130-154 85-109 (681)
172 PRK00341 hypothetical protein; 29.5 1.4E+02 0.003 23.9 5.2 61 251-315 18-82 (91)
173 PF07687 M20_dimer: Peptidase 29.4 2.7E+02 0.0058 21.5 7.5 57 263-322 32-108 (111)
174 PF05687 DUF822: Plant protein 29.3 67 0.0015 28.3 3.5 25 130-154 12-36 (150)
175 PRK09034 aspartate kinase; Rev 28.9 2.4E+02 0.0053 28.8 8.1 42 244-285 379-423 (454)
176 TIGR00656 asp_kin_monofn aspar 28.9 3E+02 0.0064 27.3 8.6 34 248-281 335-371 (401)
177 PRK09977 putative Mg(2+) trans 28.4 4.9E+02 0.011 24.2 9.3 64 248-316 142-205 (215)
178 cd04911 ACT_AKiii-YclM-BS_1 AC 28.3 1.4E+02 0.0031 23.2 4.8 24 259-282 13-36 (76)
179 PF06005 DUF904: Protein of un 26.1 1.3E+02 0.0027 23.2 4.2 25 169-193 13-37 (72)
180 PRK04998 hypothetical protein; 26.1 1.6E+02 0.0035 23.2 4.9 62 251-315 16-79 (88)
181 PF14992 TMCO5: TMCO5 family 26.1 95 0.0021 30.2 4.2 26 168-193 145-170 (280)
182 PF12344 UvrB: Ultra-violet re 26.1 1.1E+02 0.0024 21.5 3.5 29 130-158 9-37 (44)
183 cd04920 ACT_AKiii-DAPDC_2 ACT 26.1 2.6E+02 0.0055 20.2 6.2 23 259-281 12-34 (63)
184 PF00585 Thr_dehydrat_C: C-ter 25.9 53 0.0012 26.1 2.2 49 248-297 8-59 (91)
185 PRK06635 aspartate kinase; Rev 25.9 2.5E+02 0.0055 27.8 7.5 52 245-296 257-310 (404)
186 PLN02551 aspartokinase 25.7 2.9E+02 0.0063 29.0 8.1 35 248-282 364-401 (521)
187 COG4710 Predicted DNA-binding 25.5 1.5E+02 0.0033 23.2 4.4 33 143-181 15-48 (80)
188 PRK08210 aspartate kinase I; R 24.9 3.1E+02 0.0066 27.4 7.9 66 243-318 332-400 (403)
189 KOG3119 Basic region leucine z 24.9 5.9E+02 0.013 24.3 9.5 25 170-194 218-242 (269)
190 PRK06291 aspartate kinase; Pro 24.2 3.6E+02 0.0078 27.6 8.4 46 244-289 392-440 (465)
191 PRK08818 prephenate dehydrogen 23.4 4.2E+02 0.0092 26.6 8.5 48 252-300 297-345 (370)
192 PRK06291 aspartate kinase; Pro 23.1 3.2E+02 0.007 28.0 7.8 41 247-287 318-361 (465)
193 PTZ00324 glutamate dehydrogena 23.1 4.7E+02 0.01 30.0 9.4 64 239-302 216-286 (1002)
194 PF01545 Cation_efflux: Cation 22.9 4.2E+02 0.0091 24.4 8.0 58 262-319 205-265 (284)
195 TIGR01297 CDF cation diffusion 22.6 4.4E+02 0.0096 24.2 8.0 56 263-318 193-251 (268)
196 cd04891 ACT_AK-LysC-DapG-like_ 22.4 2.5E+02 0.0053 18.7 5.0 27 258-284 9-35 (61)
197 COG3074 Uncharacterized protei 22.3 1.5E+02 0.0033 23.0 3.9 26 169-194 13-38 (79)
198 PRK06635 aspartate kinase; Rev 22.1 3.7E+02 0.008 26.7 7.8 39 244-282 334-375 (404)
199 smart00338 BRLZ basic region l 21.9 1.2E+02 0.0026 22.2 3.3 21 174-194 26-46 (65)
200 PF00170 bZIP_1: bZIP transcri 21.7 1.2E+02 0.0026 22.1 3.3 19 174-192 26-44 (64)
201 KOG1029 Endocytic adaptor prot 21.5 81 0.0017 35.0 3.0 20 175-194 438-457 (1118)
202 PRK07431 aspartate kinase; Pro 21.4 3.5E+02 0.0075 28.5 7.8 66 243-318 341-409 (587)
203 PRK11191 RNase E inhibitor pro 21.1 2.8E+02 0.006 24.1 5.8 55 260-317 42-97 (138)
204 PLN02551 aspartokinase 21.1 4.8E+02 0.01 27.4 8.7 66 245-318 440-507 (521)
205 PRK10738 hypothetical protein; 20.8 2.3E+02 0.0051 24.0 5.3 55 265-320 50-111 (134)
206 PRK10820 DNA-binding transcrip 20.3 1.4E+02 0.0031 31.0 4.6 36 252-287 2-37 (520)
207 PF15392 Joubert: Joubert synd 20.2 2.8E+02 0.0061 27.5 6.2 58 129-186 56-116 (329)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.45 E-value=1.8e-13 Score=99.51 Aligned_cols=52 Identities=31% Similarity=0.585 Sum_probs=48.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCC---CCCCCchhhhHHHHHHHHHHHH
Q 020210 129 QRMTHIAVERNRRKQMNEYLAILRSLMPPS---YVQRGDQASVIGGSINFVKELE 180 (329)
Q Consensus 129 ~r~~h~~~ER~RR~~mn~~~~~LrslvP~~---~~~k~dKasIL~~AI~YIk~Lq 180 (329)
+|..|+.+||+||++||+.|..|+.+||.. ...|.+|++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 467999999999999999999999999995 4578999999999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.41 E-value=5.3e-13 Score=97.76 Aligned_cols=57 Identities=32% Similarity=0.560 Sum_probs=51.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCchhhhHHHHHHHHHHHHHHHH
Q 020210 128 NQRMTHIAVERNRRKQMNEYLAILRSLMPPSY-VQRGDQASVIGGSINFVKELEQLLQ 184 (329)
Q Consensus 128 ~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~-~~k~dKasIL~~AI~YIk~Lq~~v~ 184 (329)
..+..|+.+||+||++||+.|..|+++||..+ ..|.||++||..||+||+.|+.+++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35788999999999999999999999999953 3788999999999999999998763
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.33 E-value=3.2e-12 Score=91.80 Aligned_cols=51 Identities=35% Similarity=0.513 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCchhhhHHHHHHHHHHHHHHHH
Q 020210 134 IAVERNRRKQMNEYLAILRSLMPPSY-VQRGDQASVIGGSINFVKELEQLLQ 184 (329)
Q Consensus 134 ~~~ER~RR~~mn~~~~~LrslvP~~~-~~k~dKasIL~~AI~YIk~Lq~~v~ 184 (329)
+..||+||++||+.|..|+++||... ..+.+|++||..||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999743 5788999999999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.97 E-value=3.8e-09 Score=104.94 Aligned_cols=64 Identities=28% Similarity=0.491 Sum_probs=54.3
Q ss_pred hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCchhhhHHHHHHHHHHHHHHHHHH
Q 020210 123 KEEIENQRMTHIAVERNRRKQMNEYLAILRSLMPPSYV--QRGDQASVIGGSINFVKELEQLLQSM 186 (329)
Q Consensus 123 ~e~~~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~~--~k~dKasIL~~AI~YIk~Lq~~v~~L 186 (329)
.+.+..+|.+|+++||+||++||+++.+|..|||.+.. .|..|..||..+++||++|++..++.
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 45566788899999999999999999999999998411 14569999999999999999887743
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.71 E-value=3.5e-08 Score=88.33 Aligned_cols=68 Identities=19% Similarity=0.314 Sum_probs=57.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC-----CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020210 128 NQRMTHIAVERNRRKQMNEYLAILRSLMPPSY-----VQRGDQASVIGGSINFVKELEQLLQSMEAQKRNTSQ 195 (329)
Q Consensus 128 ~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~-----~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~~~ 195 (329)
-+|.+|.-+||+||+.||..+..|+.|||... ..|..||.||-.+|+||.+|.+++...+.+...+.+
T Consensus 61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k 133 (229)
T KOG1319|consen 61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRK 133 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999831 226778999999999999999988887777666543
No 6
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.59 E-value=5.7e-07 Score=70.02 Aligned_cols=69 Identities=14% Similarity=0.331 Sum_probs=59.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCH---HHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTV---DEIAAAVHQILLE 320 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~---~eI~~aL~~il~r 320 (329)
+|+|.|++|||+|.+|..+|-.++++|.+|.|+|.++++.-+|+++=.+|.++.+. +.|+++|..++.|
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999997788877544 3556666666653
No 7
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.43 E-value=5.1e-07 Score=84.15 Aligned_cols=65 Identities=25% Similarity=0.393 Sum_probs=56.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHH-HhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020210 128 NQRMTHIAVERNRRKQMNEYLAIL-RSLMPPSYVQRGDQASVIGGSINFVKELEQLLQSMEAQKRNT 193 (329)
Q Consensus 128 ~~r~~h~~~ER~RR~~mn~~~~~L-rslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~ 193 (329)
.+|..-.++||+|=+|+|+.|.+| |.-.+++ .++.-|+.||..||+||..||..++++.+....+
T Consensus 117 DRRKAATMRERRRLkKVNEAFE~LKRrT~~NP-NQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 117 DRRKAATMRERRRLKKVNEAFETLKRRTSSNP-NQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 457788999999999999999999 6677775 6899999999999999999999999988766554
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.28 E-value=3.4e-06 Score=78.68 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=53.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020210 129 QRMTHIAVERNRRKQMNEYLAILRSLMPPSYVQRGD-QASVIGGSINFVKELEQLLQSMEAQKRNT 193 (329)
Q Consensus 129 ~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~d-KasIL~~AI~YIk~Lq~~v~~L~~~~~~~ 193 (329)
.|..|+.-||+||..|+++|..|+.+||..-..+.. .++||..|..||+.|+.+....+..++.+
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 467899999999999999999999999984333333 57899999999999998777666555443
No 9
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.28 E-value=9.1e-06 Score=62.81 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=50.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCC
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNT 306 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s 306 (329)
+|+|.+.+|||+|.+|.++|..+||+|..|.|+|.|+++.-+|.+.=.+|.++.+
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d 57 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTD 57 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCC
Confidence 6899999999999999999999999999999999999999999998667776643
No 10
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.25 E-value=1.2e-05 Score=62.72 Aligned_cols=67 Identities=9% Similarity=0.103 Sum_probs=55.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEEecCCCccCC---HHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVS--TVDQMVLYSVSVKVEEGSQLNT---VDEIAAAVHQILL 319 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvS--t~~~~vl~s~~vKv~e~~~l~s---~~eI~~aL~~il~ 319 (329)
+|+|.|.+|||+|.+|..+|..+||+|..|.|+ |.|+++.-+|.+ -.++.++.+ .+.|+++|.+.+.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999 999999999999 345555433 3456666666543
No 11
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.23 E-value=1.1e-06 Score=82.82 Aligned_cols=59 Identities=20% Similarity=0.418 Sum_probs=50.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC------CCCCchhhhHHHHHHHHHHHHHHHH
Q 020210 126 IENQRMTHIAVERNRRKQMNEYLAILRSLMPPSY------VQRGDQASVIGGSINFVKELEQLLQ 184 (329)
Q Consensus 126 ~~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~------~~k~dKasIL~~AI~YIk~Lq~~v~ 184 (329)
.+.++..|-+.||+||.+||+.|.+|+.|||... ..|.+|+.||.-|++|++.|+...+
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 3456678899999999999999999999999731 2578999999999999999986543
No 12
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.18 E-value=1.5e-05 Score=61.76 Aligned_cols=49 Identities=22% Similarity=0.228 Sum_probs=45.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEec
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVST-VDQMVLYSVSVKVE 299 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt-~~~~vl~s~~vKv~ 299 (329)
+.|+|.|++|||+|.+|..+|..+||+|+.|.|++ .+++++.+|.+.-.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~ 50 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA 50 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC
Confidence 46899999999999999999999999999999996 89999999999743
No 13
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.13 E-value=2.5e-06 Score=91.26 Aligned_cols=53 Identities=23% Similarity=0.506 Sum_probs=48.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCchhhhHHHHHHHHHHHHHH
Q 020210 130 RMTHIAVERNRRKQMNEYLAILRSLMPPS--YVQRGDQASVIGGSINFVKELEQL 182 (329)
Q Consensus 130 r~~h~~~ER~RR~~mn~~~~~LrslvP~~--~~~k~dKasIL~~AI~YIk~Lq~~ 182 (329)
|..|+.+||+||++||.++.+|.+|||.. ..-|+||..||..||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 56899999999999999999999999984 126899999999999999999884
No 14
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.08 E-value=6.6e-05 Score=57.23 Aligned_cols=53 Identities=23% Similarity=0.384 Sum_probs=46.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCCCcc
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEGSQL 304 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~~~l 304 (329)
.|.|.|+++||+|.+|..+|..+||+|+.|.+.+. +++++-+|.+.-.++...
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~ 56 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPI 56 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCC
Confidence 57899999999999999999999999999999877 799999999985555443
No 15
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.01 E-value=0.0001 Score=56.59 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=45.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecC
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEE 300 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e 300 (329)
+|+|.++++||+|.+|..+|..+|+.|+.+.+.+.++.++.+|.+.-.+
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~ 50 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEE 50 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCc
Confidence 5889999999999999999999999999999999999999999987444
No 16
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.00 E-value=1.7e-05 Score=73.69 Aligned_cols=64 Identities=27% Similarity=0.368 Sum_probs=55.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 020210 127 ENQRMTHIAVERNRRKQMNEYLAILRSLMPPSY--VQRGDQASVIGGSINFVKELEQLLQSMEAQK 190 (329)
Q Consensus 127 ~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~--~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~ 190 (329)
..++..++.+||+|=+.+|..|..||.++|... .+|..|..+|..||.||+.|++.++.-+...
T Consensus 107 ~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 107 SAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 355778899999999999999999999999965 4678999999999999999999987776544
No 17
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.95 E-value=9.4e-06 Score=87.37 Aligned_cols=65 Identities=18% Similarity=0.431 Sum_probs=56.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020210 127 ENQRMTHIAVERNRRKQMNEYLAILRSLMPPSYVQRGDQASVIGGSINFVKELEQLLQSMEAQKRN 192 (329)
Q Consensus 127 ~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~ 192 (329)
+.+|.+||.+||+.|.-||+++.+|+.+||.. .-|..|...|..||+||++|+...+.|......
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~-~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~ 338 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGT-EAKLNKSAVLRKAIDYIEDLQGYNQKLKLENAS 338 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCcc-HhhhhhhhhHHHHHHHHHHhhccccccchhhhh
Confidence 35689999999999999999999999999985 458899999999999999999887777654443
No 18
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.78 E-value=0.00028 Score=53.95 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=53.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVST-VDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt-~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
.|-|.|+.+||++.+|..+|..+||+|+.|++.+ .++.++-+|.+.-.++. ...++.++|.+.+
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~---~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG---ETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc---chHHHHHHHHHhh
Confidence 4778899999999999999999999999999975 58999999999865554 4577777776654
No 19
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=97.73 E-value=3.7e-05 Score=67.02 Aligned_cols=62 Identities=26% Similarity=0.381 Sum_probs=54.7
Q ss_pred hHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHH
Q 020210 123 KEEIENQRMTHIAVERNRRKQMNEYLAILRSLMPPSYVQRGDQASVIGGSINFVKELEQLLQ 184 (329)
Q Consensus 123 ~e~~~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~ 184 (329)
-+|...||.-|+..||+|-..+|+.|..||.++|.....|..|.--|.-|..||..|-+-++
T Consensus 72 ~dE~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 72 LDELQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 46788999999999999999999999999999998555677787889999999999976554
No 20
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.73 E-value=0.00064 Score=50.45 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=52.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
.|.|.+..++|+|.+|+.+|.++++.|+++++.+.++.++..|.+.-.++.. .+. +..+.|.+.|
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~-~~~~~i~~~l 66 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDP-ERQEALRAAL 66 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCH-HHHHHHHHHH
Confidence 5789999999999999999999999999999999888999999998766654 333 3333444444
No 21
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.57 E-value=0.00083 Score=51.15 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=51.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILL 319 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~ 319 (329)
.|.|.++.++|+|.+|..+|.+++++|+++.+.+.++.++.+|++.-.++... +. +..++|.+.|.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~-~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DP-KTIEAVRQEIG 68 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CH-HHHHHHHHHhc
Confidence 56778999999999999999999999999999988888888888874444433 33 33344555443
No 22
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.54 E-value=0.00017 Score=57.15 Aligned_cols=55 Identities=18% Similarity=0.396 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCCchh---hhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020210 141 RKQMNEYLAILRSLMPPSYV-QRGDQA---SVIGGSINFVKELEQLLQSMEAQKRNTSQ 195 (329)
Q Consensus 141 R~~mn~~~~~LrslvP~~~~-~k~dKa---sIL~~AI~YIk~Lq~~v~~L~~~~~~~~~ 195 (329)
-++|++.+..|+.|+|.... .+.+|+ .+|.++.+||+.|..+|..|.+++..+..
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999998422 123454 48999999999999999999999988764
No 23
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.51 E-value=0.00092 Score=51.44 Aligned_cols=68 Identities=10% Similarity=0.204 Sum_probs=55.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
+++|.|.+++|||++..|..+|.++|.+|+.++.++.++.+...+.+.+.+. +.++|+.+|.++..+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~----~~~~l~~~L~~l~~~~ 69 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPED----SLERLESALEELAEEL 69 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHH----HHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcc----cHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999999999999999888888887732 4678888888776543
No 24
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.50 E-value=0.00011 Score=70.50 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=51.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 020210 128 NQRMTHIAVERNRRKQMNEYLAILRSLMPPSYVQRGDQASVIGGSINFVKELEQLLQSM 186 (329)
Q Consensus 128 ~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L 186 (329)
-+|.--|.-||+|=+-||.-|..||+|+|.--.-|..||.||..+.+||.+|+..--+|
T Consensus 59 mRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 59 MRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 34556788999999999999999999999855678899999999999999999765444
No 25
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.19 E-value=0.0057 Score=46.76 Aligned_cols=66 Identities=9% Similarity=0.284 Sum_probs=54.6
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC------CEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD------QMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~------~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
|.|.|+.+||++.+|-+.|.++|+.|.+++..+.+ +.+...+.+.++.+ .+..++.++|..+-.++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~---~~~~~l~~~l~~l~~~~ 73 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG---TDLDALREELEELCDDL 73 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC---CCHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999998877 66666666766643 26789998888876654
No 26
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.16 E-value=0.0057 Score=47.16 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=56.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHH
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLE 320 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r 320 (329)
+.|.+.|+++||++.+|-..|.++|..|+.++....++.++..+.+.++. .+.+++.++|..+-.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~----~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW----DAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc----ccHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999887777777652 2578888888876654
No 27
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.15 E-value=0.0027 Score=69.80 Aligned_cols=70 Identities=14% Similarity=0.269 Sum_probs=57.7
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCC---HHHHHHHHHHHH
Q 020210 248 ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNT---VDEIAAAVHQIL 318 (329)
Q Consensus 248 e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s---~~eI~~aL~~il 318 (329)
+....|+|.+.+|||+|.+|.++|.++||+|.+|.|+|.++++.-+|.+.-.+|..+ + .+.|+++|...+
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l-~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRAL-NEELQQELRQRLTEAL 878 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcC-CHHHHHHHHHHHHHHH
Confidence 345699999999999999999999999999999999999999999999985555544 4 245555555554
No 28
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.13 E-value=0.0026 Score=46.13 Aligned_cols=63 Identities=11% Similarity=0.222 Sum_probs=45.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQI 317 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~i 317 (329)
.|.|.|+++||+|.+|.+.|-++|+.|.++.+.+..+.....+.+...+.. ..+.+.++|.++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~ 64 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEE---DLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGH---GHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCC---CHHHHHHHHHcc
Confidence 578899999999999999999999999999999886621222222222221 356777777654
No 29
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.12 E-value=0.0019 Score=49.61 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=43.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecCC
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVKVEEG 301 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vKv~e~ 301 (329)
+.|+|.+.+++|+|.+|..+|.+.++.|.++++... ++.+...|.++|.+-
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~ 59 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDL 59 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSH
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCH
Confidence 578899999999999999999999999999999884 788889999998753
No 30
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.11 E-value=0.005 Score=67.82 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=64.5
Q ss_pred ceEEEEEe--CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCC---HHHHHHHH
Q 020210 240 ADIEVNMA--ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNT---VDEIAAAV 314 (329)
Q Consensus 240 ~~VeV~~~--e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s---~~eI~~aL 314 (329)
+.|.+.-. ++...|.|.+.++||+|.+|..+|..+||+|+.|.|+|.+++++-+|.|.-.+|..+.+ .++|+++|
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L 881 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAI 881 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 45555433 34568999999999999999999999999999999999999999999998666655533 35577777
Q ss_pred HHHHH
Q 020210 315 HQILL 319 (329)
Q Consensus 315 ~~il~ 319 (329)
.+++.
T Consensus 882 ~~~L~ 886 (895)
T PRK00275 882 CEQLD 886 (895)
T ss_pred HHHHh
Confidence 77764
No 31
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.07 E-value=0.013 Score=42.90 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=44.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCC
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGS 302 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~ 302 (329)
.|.|.|+.+||+|.+|+.+|.++++.|.++.+.+.++.....|.+.-.++.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~ 52 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGR 52 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCC
Confidence 578899999999999999999999999999998887777778888765544
No 32
>PRK00194 hypothetical protein; Validated
Probab=97.03 E-value=0.0046 Score=48.60 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=56.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
.+.|.|.|+++||++.+|.+.|-++|++|++.+..+.++.+...+.+.... . ..+++++.+.|.++-.++
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~-~-~~~~~~l~~~l~~l~~~~ 72 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE-S-KKDFAELKEELEELGKEL 72 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC-C-CCCHHHHHHHHHHHHHHc
Confidence 568999999999999999999999999999999988888766666776653 1 125788888888876554
No 33
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.02 E-value=0.0041 Score=48.90 Aligned_cols=69 Identities=17% Similarity=0.281 Sum_probs=57.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
+.|.+.|+++||++..|.+.|-++|++|++++..+.++.+...+.+.++. .. .+++++.++|..+-.++
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~-~~-~~~~~L~~~l~~l~~~~ 70 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE-SN-LDFAELQEELEELGKEL 70 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC-CC-CCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999988888877777777653 11 25789998888876654
No 34
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.98 E-value=0.0075 Score=46.03 Aligned_cols=67 Identities=9% Similarity=0.169 Sum_probs=56.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
+|.|.+++|||++.+|.+.|.++|++|+.++.++.++.+...+.+.++.+. +.+++.++|..+..++
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~---~~~~l~~~l~~l~~~l 67 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA---DSEALLKDLLFKAHEL 67 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC---CHHHHHHHHHHHHHHc
Confidence 368889999999999999999999999999988888887777777776553 5788888888877654
No 35
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.91 E-value=0.0082 Score=66.37 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=65.5
Q ss_pred ceEEEEEe--CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCC---HHHHHHHH
Q 020210 240 ADIEVNMA--ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNT---VDEIAAAV 314 (329)
Q Consensus 240 ~~VeV~~~--e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s---~~eI~~aL 314 (329)
+.|.+.-. +....|.|.+.++||+|.+|..+|.++||+|..+.|.|.+++++-+|.+.-.++..+.+ .++|+++|
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L 910 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRAL 910 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHH
Confidence 45555433 34568999999999999999999999999999999999999999999998666665543 35677777
Q ss_pred HHHHHH
Q 020210 315 HQILLE 320 (329)
Q Consensus 315 ~~il~r 320 (329)
.+++..
T Consensus 911 ~~~L~~ 916 (931)
T PRK05092 911 LAALAE 916 (931)
T ss_pred HHHhcC
Confidence 777743
No 36
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.87 E-value=0.011 Score=44.83 Aligned_cols=70 Identities=10% Similarity=0.047 Sum_probs=50.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
.|.|.|+++||++.+|.+.|-++|+.|+.++..+..+--++.+.+++.-.....+.+++.++|..+-.++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l 70 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEF 70 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 3789999999999999999999999999999886322222334444432221125788998888876543
No 37
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.83 E-value=0.0065 Score=66.62 Aligned_cols=69 Identities=13% Similarity=0.270 Sum_probs=56.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCC--HHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNT--VDEIAAAVHQI 317 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s--~~eI~~aL~~i 317 (329)
....|+|.+.+|||+|.+|.++|.++|++|..|.|+|.++++.-+|.+.-.+|..+.. .++|+++|...
T Consensus 782 ~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~ 852 (854)
T PRK01759 782 EQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSN 852 (854)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHH
Confidence 3469999999999999999999999999999999999999999999998666665532 13444444443
No 38
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.79 E-value=0.011 Score=64.98 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=61.4
Q ss_pred ceEEEEEe--CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCC--HHHHHHHHH
Q 020210 240 ADIEVNMA--ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNT--VDEIAAAVH 315 (329)
Q Consensus 240 ~~VeV~~~--e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s--~~eI~~aL~ 315 (329)
+.|.+.-. ++...|.|.+..+||+|.+|..+|..+||+|+.|.|+|.+++++-+|.+.-.++..+.+ .++|+++|.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~ 863 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALC 863 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence 45555533 24469999999999999999999999999999999999999999999998555554422 245555555
Q ss_pred HHH
Q 020210 316 QIL 318 (329)
Q Consensus 316 ~il 318 (329)
..+
T Consensus 864 ~~l 866 (869)
T PRK04374 864 ACL 866 (869)
T ss_pred HHh
Confidence 544
No 39
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.74 E-value=0.0092 Score=44.69 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=47.9
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
|+|.+..+||+|.+|+.+|.+.|..|.+.++... ++.....|.+++.+...+ +.|..+|.+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~l---~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEHA---ETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHHH---HHHHHHHhc
Confidence 6888999999999999999999999999998776 467777788888755422 445554443
No 40
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.48 E-value=0.02 Score=62.78 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=59.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCEEEEEEEEEecCCCccCC---HHHHHHHHHHHHH
Q 020210 248 ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVS-TVDQMVLYSVSVKVEEGSQLNT---VDEIAAAVHQILL 319 (329)
Q Consensus 248 e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvS-t~~~~vl~s~~vKv~e~~~l~s---~~eI~~aL~~il~ 319 (329)
.+...|.|.++++||+|.+|..+|..+||+|+.|.|. +.++.++-+|.++-.++....+ .+.|.++|.+++.
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~ 741 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLA 741 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHc
Confidence 3456899999999999999999999999999999998 6799999999999777665533 3346666666664
No 41
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.44 E-value=0.018 Score=41.87 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=38.4
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEEec
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-----DQMVLYSVSVKVE 299 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-----~~~vl~s~~vKv~ 299 (329)
|.|.++.+||.|.+|++.|.+.|+.|.+.+.... .+.....|++.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~ 52 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR 52 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence 4578899999999999999999999999887654 3556666777764
No 42
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.43 E-value=0.024 Score=61.63 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=63.9
Q ss_pred ceEEEEEe-CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 240 ADIEVNMA-ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 240 ~~VeV~~~-e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
+.|.+... .+...|.|+|+++||++.+|..+|..+|++|+.++|.+.++.++.+|.|.-.++... ..+.|+++|.+++
T Consensus 588 ~~v~~~~~~~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~-~~~~l~~~L~~~L 666 (774)
T PRK03381 588 VHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP-DAALLRQDLRRAL 666 (774)
T ss_pred CEEEEeeCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc-hHHHHHHHHHHHH
Confidence 44444322 356789999999999999999999999999999999999999999999986555433 3577888888776
Q ss_pred H
Q 020210 319 L 319 (329)
Q Consensus 319 ~ 319 (329)
.
T Consensus 667 ~ 667 (774)
T PRK03381 667 D 667 (774)
T ss_pred c
Confidence 5
No 43
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.41 E-value=0.0025 Score=64.87 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=49.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 020210 127 ENQRMTHIAVERNRRKQMNEYLAILRSLMPPSY--VQRGDQASVIGGSINFVKELEQLLQSME 187 (329)
Q Consensus 127 ~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~--~~k~dKasIL~~AI~YIk~Lq~~v~~L~ 187 (329)
..+|+.++++||-|-+.||+.|++|-.+.=--. -+.-.|.-||..|+.-|-.|+|+|.+-.
T Consensus 524 kERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 524 KERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred HHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 378999999999999999999999977754310 1123578899999999999999997643
No 44
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.41 E-value=0.02 Score=62.76 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=59.6
Q ss_pred ceEEEEEe--CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCC--HHHHHHHHH
Q 020210 240 ADIEVNMA--ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNT--VDEIAAAVH 315 (329)
Q Consensus 240 ~~VeV~~~--e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s--~~eI~~aL~ 315 (329)
+.|.+.-. +....|.|.|.++||+|.+|.++|..+|++|.++.|+|.++++.-.|.+.-..+..+.+ .+.|+++|.
T Consensus 767 ~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~ 846 (850)
T TIGR01693 767 PRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLA 846 (850)
T ss_pred CeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 34444422 24579999999999999999999999999999999999999999999998776665532 234444444
Q ss_pred H
Q 020210 316 Q 316 (329)
Q Consensus 316 ~ 316 (329)
.
T Consensus 847 ~ 847 (850)
T TIGR01693 847 A 847 (850)
T ss_pred H
Confidence 3
No 45
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.39 E-value=0.025 Score=61.49 Aligned_cols=66 Identities=23% Similarity=0.287 Sum_probs=55.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQI 317 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~i 317 (329)
+...|.|.+..+||+|.+|..+|..+|++|+.+.|+|.+++++-+|.+.-.++..+. ++ .++|.+.
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~--~~-~~~l~~~ 771 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLA--DA-RAAVEQA 771 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCc--hH-HHHHHHH
Confidence 357999999999999999999999999999999999999999999999866666553 23 4444443
No 46
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.31 E-value=0.018 Score=63.20 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=49.5
Q ss_pred eEEEEEe--CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEE
Q 020210 241 DIEVNMA--ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVK 297 (329)
Q Consensus 241 ~VeV~~~--e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vK 297 (329)
.|.+.-. ++...|.|.+.++||+|.+|..+|..+||+|+.|.|+|.+++++-+|.+.
T Consensus 775 ~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~ 833 (856)
T PRK03059 775 RVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID 833 (856)
T ss_pred eEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc
Confidence 4444332 34569999999999999999999999999999999999999999999993
No 47
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.02 E-value=0.031 Score=41.88 Aligned_cols=63 Identities=19% Similarity=0.343 Sum_probs=46.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
.|.|.+..+||+|.+|++.|.++++.|...+.... ++..-..|.+.+.+.. ...++|..+|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~--~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMN--GDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchH--HHHHHHHHHHhc
Confidence 57888999999999999999999999999987654 4666667777765432 023555555544
No 48
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.99 E-value=0.055 Score=59.49 Aligned_cols=79 Identities=23% Similarity=0.290 Sum_probs=60.6
Q ss_pred cceEEEEE--eCCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEecCCCccCCHH---HHHH
Q 020210 239 VADIEVNM--AESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVST-VDQMVLYSVSVKVEEGSQLNTVD---EIAA 312 (329)
Q Consensus 239 ~~~VeV~~--~e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt-~~~~vl~s~~vKv~e~~~l~s~~---eI~~ 312 (329)
.+.|.+.- ..+...|.|.++++||+|.+|..+|..+||+|+.|.|.+ .++.++-+|.|.-.++..+ +.+ .|.+
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~-~~~~~~~l~~ 742 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLL-EFDRRRQLEQ 742 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCC-CHHHHHHHHH
Confidence 34555543 235569999999999999999999999999999999976 7999999999986666544 332 3455
Q ss_pred HHHHHH
Q 020210 313 AVHQIL 318 (329)
Q Consensus 313 aL~~il 318 (329)
+|.+++
T Consensus 743 ~L~~aL 748 (854)
T PRK01759 743 ALTKAL 748 (854)
T ss_pred HHHHHH
Confidence 555554
No 49
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.035 Score=60.05 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=64.5
Q ss_pred cceEEEEEeC--CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 239 VADIEVNMAE--SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 239 ~~~VeV~~~e--~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
.|.|.+.-.. ..-+|+|.+..|||+|..|-.+|..++|+|.++.|+|+|.++.-+|.+...++..+. .++.+.|.+
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~--~~~~q~l~~ 855 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALN--AELRQSLLQ 855 (867)
T ss_pred CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCC--HHHHHHHHH
Confidence 3666665443 346899999999999999999999999999999999999999999999988877662 566666655
Q ss_pred HH
Q 020210 317 IL 318 (329)
Q Consensus 317 il 318 (329)
.+
T Consensus 856 ~l 857 (867)
T COG2844 856 RL 857 (867)
T ss_pred HH
Confidence 54
No 50
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.94 E-value=0.065 Score=59.16 Aligned_cols=79 Identities=24% Similarity=0.263 Sum_probs=60.8
Q ss_pred cceEEEEE--eCCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCCCccCCH---HHHHH
Q 020210 239 VADIEVNM--AESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEGSQLNTV---DEIAA 312 (329)
Q Consensus 239 ~~~VeV~~--~e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~~~l~s~---~eI~~ 312 (329)
.+-|.+.- ..+...|.|+|+++||+|.+|..+|..+||+|+.|.|.+. +|.++-+|.+.-.++... +. +.|.+
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~-~~~~~~~I~~ 766 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPL-SQDRHQVIRK 766 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCC-CHHHHHHHHH
Confidence 34455543 2356799999999999999999999999999999998765 669999999986666654 33 33566
Q ss_pred HHHHHH
Q 020210 313 AVHQIL 318 (329)
Q Consensus 313 aL~~il 318 (329)
+|.+++
T Consensus 767 ~L~~aL 772 (884)
T PRK05007 767 ALEQAL 772 (884)
T ss_pred HHHHHH
Confidence 666655
No 51
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.68 E-value=0.081 Score=58.49 Aligned_cols=70 Identities=17% Similarity=0.306 Sum_probs=56.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCEEEEEEEEEecCCCccCC----HHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNV-STVDQMVLYSVSVKVEEGSQLNT----VDEIAAAVHQIL 318 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anv-St~~~~vl~s~~vKv~e~~~l~s----~~eI~~aL~~il 318 (329)
+...|.|.|+++||++.+|+.+|..+||+|+.|.| |+.+|.++-+|.|.-.++..... .+.|.++|.+++
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L 777 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEAL 777 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHH
Confidence 55689999999999999999999999999999998 56688999999998666554222 344666666665
No 52
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.67 E-value=0.091 Score=58.26 Aligned_cols=80 Identities=14% Similarity=0.212 Sum_probs=61.2
Q ss_pred cceEEEEEe--CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEecCCCccCC---HHHHHH
Q 020210 239 VADIEVNMA--ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVST-VDQMVLYSVSVKVEEGSQLNT---VDEIAA 312 (329)
Q Consensus 239 ~~~VeV~~~--e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt-~~~~vl~s~~vKv~e~~~l~s---~~eI~~ 312 (329)
.+.|.+... .+...|.|.|+.+||+|.+|..+|..+|++|+.+.|.+ .+++++.+|.+.-.++....+ .+.|.+
T Consensus 719 ~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~ 798 (931)
T PRK05092 719 PLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAK 798 (931)
T ss_pred CcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 345555443 35679999999999999999999999999999999976 688999999998665543222 455666
Q ss_pred HHHHHH
Q 020210 313 AVHQIL 318 (329)
Q Consensus 313 aL~~il 318 (329)
+|.+++
T Consensus 799 ~L~~~l 804 (931)
T PRK05092 799 AIEDAL 804 (931)
T ss_pred HHHHHH
Confidence 666655
No 53
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.56 E-value=0.085 Score=58.04 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=55.0
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCEEEEEEEEEecCCCccCC---HHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNV-STVDQMVLYSVSVKVEEGSQLNT---VDEIAAAVHQIL 318 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anv-St~~~~vl~s~~vKv~e~~~l~s---~~eI~~aL~~il 318 (329)
+...|.|+|+++||++.+|..+|..+||+|+.|.| |+.+|+++-+|.|.-.++. ... .+.|.++|.+++
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l 749 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEHELAERL 749 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999 5679999999999855443 211 344555555554
No 54
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.52 E-value=0.065 Score=37.39 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=39.2
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEecC
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD-QMVLYSVSVKVEE 300 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~-~~vl~s~~vKv~e 300 (329)
|+|.+.+++|.+.+|++.|.+++++|.+..+...+ +.....|.+++..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 49 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD 49 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC
Confidence 46788999999999999999999999999887665 5555666676653
No 55
>PRK04435 hypothetical protein; Provisional
Probab=95.41 E-value=0.089 Score=45.80 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=52.4
Q ss_pred eCCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 247 AESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 247 ~e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
.|..+.|.+.+.++||+|.+|++.|.+.++.|+..+.+.. ++.+..+|++.+.+.. ..+++|.++|.+
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~--~~L~~Li~~L~~ 134 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSME--GDIDELLEKLRN 134 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChH--HHHHHHHHHHHc
Confidence 4677899999999999999999999999999999987653 6777778888875432 124555555544
No 56
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=95.35 E-value=0.046 Score=41.45 Aligned_cols=46 Identities=7% Similarity=0.088 Sum_probs=38.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecC
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEE 300 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e 300 (329)
.|+|.|.+++|+|.+|+..|.++++.|...++.+. +. ..|.+++.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~~ 47 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTIE 47 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEecC
Confidence 57899999999999999999999999999998765 44 345555553
No 57
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=95.33 E-value=0.024 Score=53.81 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=50.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCchhhhHHHHHHHHHHHHHHH
Q 020210 126 IENQRMTHIAVERNRRKQMNEYLAILRSLMPP-SYVQRGDQASVIGGSINFVKELEQLL 183 (329)
Q Consensus 126 ~~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~-~~~~k~dKasIL~~AI~YIk~Lq~~v 183 (329)
...+|..-|..||+|=-.+|+.|..||.++|. ...+|+.|...|.-|-+||..|++-.
T Consensus 69 ~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 69 LTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred hhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 34677888999999999999999999999994 44578899999999999999988654
No 58
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.98 E-value=0.14 Score=56.39 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=55.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVST-VDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt-~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
+...|.|.|+.+||++.+|..+|..+||+|+.|.|.+ .+|.++-+|.|.-.++...-..+.|.++|.+++
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l 759 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVL 759 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 5578999999999999999999999999999999976 699999999997555431112344555665554
No 59
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.97 E-value=0.089 Score=38.76 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=39.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-C-CEEEEEEEEEec
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-D-QMVLYSVSVKVE 299 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~-~~vl~s~~vKv~ 299 (329)
++|+|.+.+++|+|.+|+..|.+.++.|...+.... + +.....+.+++.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~ 51 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET 51 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC
Confidence 368999999999999999999999999999987654 3 555555666543
No 60
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=94.82 E-value=0.17 Score=36.53 Aligned_cols=60 Identities=13% Similarity=0.327 Sum_probs=44.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecCCCccCCHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVKVEEGSQLNTVDEIAAAVH 315 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vKv~e~~~l~s~~eI~~aL~ 315 (329)
.|.|.+.+++|.|.+|+..|.++++.|...+.... ++.....|.+.+.. . ..+++..+|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD-D---VIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH-H---HHHHHHHHHh
Confidence 46788899999999999999999999999988764 46666677777532 2 2455555444
No 61
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.62 E-value=0.24 Score=32.50 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=31.1
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD 287 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~ 287 (329)
|.|.|+.++|.+.+|+..|...++.|...+.....
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788999999999999999999999999987654
No 62
>PRK08577 hypothetical protein; Provisional
Probab=94.48 E-value=0.37 Score=41.04 Aligned_cols=65 Identities=12% Similarity=0.307 Sum_probs=49.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecCC-CccCCHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVKVEEG-SQLNTVDEIAAAVHQ 316 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vKv~e~-~~l~s~~eI~~aL~~ 316 (329)
+.+.|.|.+.+++|+|.+|++.|.++++++.+.+..+. ++.....+.+.+.+. . ..+++.+.|.+
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~---~l~~l~~~L~~ 122 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDI---DLEELEEELKK 122 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchh---hHHHHHHHHHc
Confidence 35789999999999999999999999999999887765 455556677777654 2 34566665554
No 63
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=94.39 E-value=0.021 Score=59.01 Aligned_cols=44 Identities=25% Similarity=0.405 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCchhhhHHHHHHHHH
Q 020210 134 IAVERNRRKQMNEYLAILRSLMPPS--YVQRGDQASVIGGSINFVK 177 (329)
Q Consensus 134 ~~~ER~RR~~mn~~~~~LrslvP~~--~~~k~dKasIL~~AI~YIk 177 (329)
..--++-|+++|..|..|.+|+|.. .++|.||.|||.-++.|++
T Consensus 30 SNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 30 SNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred CCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 3334556999999999999999973 4679999999999999975
No 64
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.38 E-value=0.4 Score=36.18 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=38.1
Q ss_pred EEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEecC
Q 020210 254 KILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQ-MVLYSVSVKVEE 300 (329)
Q Consensus 254 kI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~-~vl~s~~vKv~e 300 (329)
-+..+++||.|.++++.|.++|+.+++.......+ .--|.|.+.++.
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 34457899999999999999999999998776644 555788888764
No 65
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.36 E-value=0.38 Score=46.33 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=55.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVST--VDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEIE 322 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt--~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~~ 322 (329)
..+.|.|.|++|||++..|-+.|-++|+.|+.++.++ .++.+.-.+.+.+. ... .+.+++.++|..+-..+.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~-~~~-~~~~~L~~~L~~l~~~l~ 78 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD-GLI-FNLETLRADFAALAEEFE 78 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC-CCC-CCHHHHHHHHHHHHHHhC
Confidence 4578999999999999999999999999999999999 77754444444442 111 257888888887766554
No 66
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.19 E-value=0.35 Score=36.20 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=41.9
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV---DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~---~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
+.|.-+.+||.|.+|++.|.++|+.|++...... .+.-...+++.++... ..+.|.++|.+
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~---~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS---KENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch---HHHHHHHHHhC
Confidence 4566789999999999999999999999987654 3333445555543222 24556555543
No 67
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=94.14 E-value=0.42 Score=46.12 Aligned_cols=72 Identities=8% Similarity=0.016 Sum_probs=53.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHHH
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEIE 322 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~~ 322 (329)
.+.|.|.|+++||++.+|-+.|-+++++|..++..+....-++.+.+.+.-.... +.++|+++|..+-..+.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~-~~~~L~~~L~~l~~~l~ 78 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL-DEDALRAGFAPIAARFG 78 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC-CHHHHHHHHHHHHHHhC
Confidence 5689999999999999999999999999999998754222233345555422222 68999999988776553
No 68
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=93.96 E-value=0.69 Score=35.42 Aligned_cols=63 Identities=13% Similarity=0.264 Sum_probs=45.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCCCccCCHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQI 317 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~i 317 (329)
.|.+..+.+||.|.+|+..|.++++.+++...... ++...|.|.+.++.. . ..+.+..+|..+
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~--~-~~~~~~~~l~~l 66 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH--I-EDPNVAEALEEL 66 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC--C-CCHHHHHHHHHH
Confidence 34556678999999999999999999999987665 345568888887633 1 345555555443
No 69
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.87 E-value=0.4 Score=36.32 Aligned_cols=66 Identities=12% Similarity=-0.032 Sum_probs=53.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQI 317 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~i 317 (329)
.|.|.|+++.|+=.+|...+-+.||.|+...+++.|.-.+..|-+.-....-.+.-+-+|+.|.++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 588999999999999999999999999999999999877767777654433334567777776553
No 70
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.83 E-value=0.53 Score=34.02 Aligned_cols=60 Identities=8% Similarity=0.150 Sum_probs=42.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
.|.|.+.+++|.|.+|+..|.++++.|...+.... ++..... +.+.+.. ..+++.++|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~--i~~~~~~---~~~~~~~~L~~ 62 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIY--MELEGVG---DIEELVEELRS 62 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEE--EEEeccc---cHHHHHHHHhC
Confidence 47788999999999999999999999999888765 3443333 4444321 34555555543
No 71
>PRK07334 threonine dehydratase; Provisional
Probab=93.74 E-value=0.27 Score=49.25 Aligned_cols=51 Identities=10% Similarity=0.260 Sum_probs=44.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEEecCC
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-----DQMVLYSVSVKVEEG 301 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-----~~~vl~s~~vKv~e~ 301 (329)
+.|.|.+.+|+|+|.+|+..|.+.++.|.++++.+. ++.+...|.++|.+-
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~ 382 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDA 382 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCH
Confidence 789999999999999999999999999999998764 567777788888643
No 72
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.60 E-value=0.4 Score=34.38 Aligned_cols=56 Identities=7% Similarity=0.205 Sum_probs=39.5
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD--QMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~--~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
|.|.-+.+||.|.+|++.|.++|+.|.+....... +...+ .+++++ .+.+.+.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v--~~~ve~------~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALL--IFRTED------IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEE--EEEeCC------HHHHHHHHHH
Confidence 56777899999999999999999999877765443 44333 444442 4555555543
No 73
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=93.49 E-value=0.48 Score=45.85 Aligned_cols=72 Identities=8% Similarity=0.109 Sum_probs=52.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHHH
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVS--TVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEIE 322 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvS--t~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~~ 322 (329)
.+.|.|.|+++||+...|-..|-++|+.|++++-. +..+.++-.+.+...... ..+.++++++|..+-.++.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~-~~~~~~l~~~l~~l~~~l~ 82 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAE-AASVDTFRQEFQPVAEKFD 82 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCC-CCCHHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999999999985 333333322222211112 2378999999988776653
No 74
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=93.28 E-value=0.63 Score=44.81 Aligned_cols=68 Identities=7% Similarity=0.012 Sum_probs=52.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecCCCccCCHHHHHHHHHH-HHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD--QMVLYSVSVKVEEGSQLNTVDEIAAAVHQ-ILLEI 321 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~--~~vl~s~~vKv~e~~~l~s~~eI~~aL~~-il~r~ 321 (329)
.|.|.|+++||++..|-..|-++|+.|+.++-+... ++++-.+.+.+... ..+.++++++|.. +-.++
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~--~~~~~~l~~~l~~~~~~~~ 72 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF--RLEESSLLAAFKSALAEKF 72 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC--CCCHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999988753 66544444444321 2368999999988 55443
No 75
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=93.26 E-value=0.71 Score=32.96 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=43.3
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD--QMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~--~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
+.|.+.+++|.|.+|+..|.+.++.|.+..+.... +.....|.+ ++ . ..+++.+.|..
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~-~---~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DS-P---VPEEVLEELKA 61 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CC-C---CCHHHHHHHHc
Confidence 56788999999999999999999999999987754 665556655 22 1 23566665554
No 76
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.71 E-value=0.73 Score=33.05 Aligned_cols=58 Identities=14% Similarity=0.364 Sum_probs=40.8
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
|.|.+.+++|.|.+|+..|.++++.|........ ++..... +.+++. ...++.++|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~----~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP----IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC----CCHHHHHHHHc
Confidence 5778899999999999999999999998887652 3444333 444432 23455555543
No 77
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.35 E-value=1.5 Score=32.25 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=42.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
.|.|..+++||.|.+++..|.+.++.|.+...... ++.....|++... ..+++.++|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~------~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM------NPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC------CHHHHHHHHHH
Confidence 56777899999999999999999999998865443 4555566665542 23466665543
No 78
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.17 E-value=1.1 Score=32.84 Aligned_cols=35 Identities=6% Similarity=0.246 Sum_probs=30.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV 286 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~ 286 (329)
.+.|.++++||.|.+|+..|.++++.|........
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 46788899999999999999999999998876554
No 79
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.04 E-value=0.89 Score=33.82 Aligned_cols=59 Identities=12% Similarity=0.195 Sum_probs=41.8
Q ss_pred EEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 254 KILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD-QMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 254 kI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~-~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
+|.-+.+||.|.++++.|.+ +.+|+..+....+ +.....+.+++.+.. ..++|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~---~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDRE---DLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 56678999999999999999 9999998886542 233344555655432 34666666654
No 80
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=91.84 E-value=1.6 Score=32.09 Aligned_cols=45 Identities=9% Similarity=0.290 Sum_probs=36.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEe
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKV 298 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv 298 (329)
.|.|..+++||.|.+|+..|.+.|+.|.+.-+...++. ..++++.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 35677899999999999999999999999987666553 5555555
No 81
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=91.72 E-value=0.74 Score=32.56 Aligned_cols=45 Identities=4% Similarity=0.293 Sum_probs=36.5
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEE
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD-QMVLYSVSVK 297 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~-~~vl~s~~vK 297 (329)
|.|..+.+||.|.++++.|.+.++.|....+...+ +..+..|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 35678899999999999999999999888877654 6655655554
No 82
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=91.66 E-value=0.77 Score=40.81 Aligned_cols=64 Identities=11% Similarity=0.284 Sum_probs=49.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecCCCccCCHHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD--QMVLYSVSVKVEEGSQLNTVDEIAAAVHQILL 319 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~--~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~ 319 (329)
.|.|...++||.|.+|...|...|+.|.+..+...+ +....+|++.. +. . .++.|...|++++.
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--~~-~-~i~qi~kQl~KLid 69 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--DE-Q-VIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--CH-H-HHHHHHHHHhcccc
Confidence 577888999999999999999999999999987654 45455555553 22 1 46888888887764
No 83
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=91.58 E-value=1.3 Score=33.67 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=43.6
Q ss_pred EEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEecCCCccCCHHHHHHHHHHH
Q 020210 254 KILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQ-MVLYSVSVKVEEGSQLNTVDEIAAAVHQI 317 (329)
Q Consensus 254 kI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~-~vl~s~~vKv~e~~~l~s~~eI~~aL~~i 317 (329)
-+..+++||.|.++++.+...|+.+.+...-...+ ..-|.|.+.++.. .+.++++|.++
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~-----~~~~~~~l~~L 63 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVD-----RGDLDQLISSL 63 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcC-----hHHHHHHHHHH
Confidence 34457799999999999999999999999877644 3458888888741 23455555444
No 84
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=91.27 E-value=0.83 Score=40.42 Aligned_cols=64 Identities=13% Similarity=0.281 Sum_probs=49.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecCCCccCCHHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD--QMVLYSVSVKVEEGSQLNTVDEIAAAVHQILL 319 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~--~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~ 319 (329)
.|.|...++||.|.+|...|...|+.|.+..+...+ +....+|++.- +. . .++.|...|++++.
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--d~-~-~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--DD-K-VLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--CH-H-HHHHHHHHHhcCcc
Confidence 577888999999999999999999999999998765 45555666653 22 2 47888888887764
No 85
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=91.00 E-value=1.3 Score=34.61 Aligned_cols=63 Identities=14% Similarity=0.277 Sum_probs=48.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecCCCccCCHHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILL 319 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~ 319 (329)
.|.|...++||.|.+|+..+..-|+.|-+.++... ++..-.+|.+ .++ . .++.|...|.+++.
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v--~~~--~-~i~ql~kQL~KL~d 69 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV--ASE--R-PIDLLSSQLNKLVD 69 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE--CCC--c-hHHHHHHHHhcCcC
Confidence 57778889999999999999999999999999874 4554455555 332 2 47888888887653
No 86
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=1.4 Score=48.16 Aligned_cols=83 Identities=19% Similarity=0.214 Sum_probs=61.7
Q ss_pred ceEEEEEeCCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 240 ADIEVNMAESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVS-TVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 240 ~~VeV~~~e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvS-t~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
..+.++...+...|-|.|+.+|.++..++.++...|++|+.++|- +.+|+++-+|.+.-.+|..+ ..+-.......++
T Consensus 674 v~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~-~~dr~~~~~~~l~ 752 (867)
T COG2844 674 VLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPV-EEDRRAALRGELI 752 (867)
T ss_pred eeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCcc-chhHHHHHHHHHH
Confidence 334444456778999999999999999999999999999999995 56999999999986666544 3333333344445
Q ss_pred HHHHH
Q 020210 319 LEIEE 323 (329)
Q Consensus 319 ~r~~~ 323 (329)
.-+++
T Consensus 753 ~~l~s 757 (867)
T COG2844 753 EALLS 757 (867)
T ss_pred HHHhc
Confidence 54443
No 87
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=90.51 E-value=2.1 Score=38.96 Aligned_cols=71 Identities=11% Similarity=0.217 Sum_probs=56.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC------EEEEEEEEEecCCCccCCHHHHHHHHHHHHHHHHHh
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQ------MVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEIEEE 324 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~------~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~~~e 324 (329)
+.|.|...++||++..|-+.|-++|+.|.+++.-+.+. .+...+.+.++.++ .++++..+|..+-..+.-+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~---~~~~L~~~l~~l~~eL~vd 172 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQ---DAANIEQAFKALCTELNAQ 172 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCC---CHHHHHHHHHHHHHHhCce
Confidence 57888899999999999999999999999999876542 44456666666665 4688999888887766544
No 88
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=90.45 E-value=0.56 Score=50.08 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCchhhhHHHHHHHHH
Q 020210 132 THIAVERNRRKQMNEYLAILRSLMPPS--YVQRGDQASVIGGSINFVK 177 (329)
Q Consensus 132 ~h~~~ER~RR~~mn~~~~~LrslvP~~--~~~k~dKasIL~~AI~YIk 177 (329)
+-.-+-|-||.|=|+-|.+|..+||-. .....||++|+.-||.|++
T Consensus 49 kSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 49 KSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 445678999999999999999999952 2456899999999999986
No 89
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=90.39 E-value=1.4 Score=39.66 Aligned_cols=69 Identities=10% Similarity=0.265 Sum_probs=52.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEIE 322 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~~ 322 (329)
.|.|...++||+|.+|...|-..|+.|.+.++......-+..+.+-+..++.. ++.|...|.+++.-+.
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~--ieqL~kQL~KLidVl~ 72 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRT--IEQLTKQLYKLVNILK 72 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHH--HHHHHHHHHHHhHhhE
Confidence 57888899999999999999999999999999763332223444445544333 7899999999887654
No 90
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=90.34 E-value=0.96 Score=36.10 Aligned_cols=65 Identities=12% Similarity=0.278 Sum_probs=49.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecCCCccCCHHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD--QMVLYSVSVKVEEGSQLNTVDEIAAAVHQILL 319 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~--~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~ 319 (329)
.|.+...++||.|.+|...|-..|+.|-+.++.... +..-.+|.+.+.+.. .++.|...|.+++.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~---~ieqI~kQL~Klid 70 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDT---SLHILIKKLKQQIN 70 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHH---HHHHHHHHHhCCcc
Confidence 577888999999999999999999999999987654 444456665533322 46888888877654
No 91
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.24 E-value=2.6 Score=33.77 Aligned_cols=63 Identities=10% Similarity=0.208 Sum_probs=45.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEecCCCccCCHHHHHHHHHHH
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD-QMVLYSVSVKVEEGSQLNTVDEIAAAVHQI 317 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~-~~vl~s~~vKv~e~~~l~s~~eI~~aL~~i 317 (329)
..|-+..+++||.|.++|..|...|+.+.+...-... ..--|.|.+.++.. . -..++++|.++
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~--~--~~~~~~~l~~L 78 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK--S--APALDPIIKSL 78 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC--C--CHHHHHHHHHH
Confidence 3445555789999999999999999999999987763 33458888888643 1 14555555444
No 92
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=89.70 E-value=1.3 Score=34.58 Aligned_cols=63 Identities=11% Similarity=0.237 Sum_probs=46.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD--QMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~--~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
.|.|...++||+|.+|...+...|..|-+.++...+ +..-.+|.+.- ++ . .++.|...|.+++
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-~~--~-~i~qi~kQL~KLi 68 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-TE--N-EATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-CH--H-HHHHHHHHHhCCc
Confidence 577888999999999999999999999999988654 44445555542 21 1 3577777766654
No 93
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.50 E-value=3.3 Score=31.85 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=43.2
Q ss_pred EEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCCCccCCHHHHHHHHHHH
Q 020210 255 ILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQI 317 (329)
Q Consensus 255 I~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~i 317 (329)
+..+++||.|.+++..++..|+.+.+...-.. +..--|.|.+.++.. .+.++++|.++
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~-----~~~i~~~l~~l 63 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD-----QRRLDELVQLL 63 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-----HHHHHHHHHHH
Confidence 33467899999999999999999999998775 334558888888633 23555555444
No 94
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=89.24 E-value=0.79 Score=34.15 Aligned_cols=56 Identities=11% Similarity=0.274 Sum_probs=41.1
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 259 KRPRQLLKMVASFQNLRLSVLHLNVST--VDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 259 ~rpg~L~~Il~aLe~lgL~Vv~anvSt--~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
++||.|.+|+..+..-|+.|-+.++.. .++..-.++.+.- +. . .++.|...|.+++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~~-~-~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--DD-R-EIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---C-C-HHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--Cc-h-hHHHHHHHHhccC
Confidence 479999999999999999999999988 4556555555553 22 2 4688887777654
No 95
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=88.96 E-value=0.42 Score=34.89 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=36.3
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVE 299 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~ 299 (329)
|-+.+.++||+|.+|+..|.+.++.|...+....++..+..|.+.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~ 48 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE 48 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC
Confidence 34577899999999999999999999887766555666666655543
No 96
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=88.69 E-value=1.4 Score=48.03 Aligned_cols=52 Identities=12% Similarity=0.225 Sum_probs=45.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecCCC
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVKVEEGS 302 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vKv~e~~ 302 (329)
+.|.|.+.+++|+|.+|..+|.+.++.|+++++.+. ++.+...|.++|.+-.
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~ 720 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQ 720 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHH
Confidence 579999999999999999999999999999999765 5777778888887543
No 97
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=88.56 E-value=1.3 Score=40.33 Aligned_cols=67 Identities=7% Similarity=0.015 Sum_probs=52.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILL 319 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~ 319 (329)
.+++|.+.+++|||++..|-+.|.++|..|+.++.+..++.+--.+.+.... . ++.++..+|..+-.
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~---~-~~~~le~~L~~l~~ 73 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW---N-AITLIESTLPLKGA 73 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh---h-HHHHHHHHHHhhhh
Confidence 5678999999999999999999999999999999999988754444443222 1 56777777766543
No 98
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=88.08 E-value=1.1 Score=36.16 Aligned_cols=71 Identities=10% Similarity=0.170 Sum_probs=54.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHHH
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEIE 322 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~~ 322 (329)
.++|.|...+|+|....|-.+|-++|+.|+..+=+..++++ ++.+-|+-.....+...++..|.....++.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~f--tm~~lV~~~~~~~d~~~lr~~l~~~~~~lg 73 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFF--TMIMLVDISKEVVDFAALRDELAAEGKKLG 73 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhc--eeeeEEcCChHhccHHHHHHHHHHHHHhcC
Confidence 36889999999999999999999999999999888888884 444444433223467777777777666653
No 99
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.02 E-value=4 Score=31.81 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=40.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecC-CCccCCHHHHHHHHHH
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEE-GSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e-~~~l~s~~eI~~aL~~ 316 (329)
.++.|.-+.+||.|.++++.|- +.+|........ .+.....|.+++++ .. ..+++.++|.+
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~---~~~~i~~~L~~ 64 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAE---ELAELLEDLKS 64 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHH---HHHHHHHHHHH
Confidence 4688888999999999999998 666665555443 24444556666655 22 24566665554
No 100
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=87.68 E-value=3.2 Score=39.96 Aligned_cols=72 Identities=8% Similarity=0.049 Sum_probs=52.8
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLE 320 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r 320 (329)
..+.+.|.|+.++|+...|-.-|-++|..|++++-......-.+...+....+....+.+.+.+++..+...
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~ 77 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEE 77 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHh
Confidence 356899999999999999999999999999999987542222234444444333334788888888875543
No 101
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=87.47 E-value=0.54 Score=47.46 Aligned_cols=44 Identities=27% Similarity=0.352 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CCCCCchhhhHHHHHHHHHH
Q 020210 135 AVERNRRKQMNEYLAILRSLMPPS--YVQRGDQASVIGGSINFVKE 178 (329)
Q Consensus 135 ~~ER~RR~~mn~~~~~LrslvP~~--~~~k~dKasIL~~AI~YIk~ 178 (329)
.+-|.||++-|-.|.+|..++|-. .....||++|+.-+..|||-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 456899999999999999999962 23468999999999999974
No 102
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=86.51 E-value=2.1 Score=46.36 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=44.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEecCC
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD-QMVLYSVSVKVEEG 301 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~-~~vl~s~~vKv~e~ 301 (329)
+.|+|.+.+++|+|.+|...|-+.++.|.++++.+.+ +.+...|.++|.+-
T Consensus 627 v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~ 678 (702)
T PRK11092 627 AEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDR 678 (702)
T ss_pred EEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCH
Confidence 5899999999999999999999999999999987764 56667788888754
No 103
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=86.43 E-value=3.3 Score=33.84 Aligned_cols=66 Identities=6% Similarity=0.164 Sum_probs=49.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecCCCccCCHHHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD--QMVLYSVSVKVEEGSQLNTVDEIAAAVHQILL 319 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~--~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~ 319 (329)
+...|.|...++||+|.+|...|-.-|..|-+.++...+ +..-.++.+. ++. .++.|...|.+++.
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~~~---~i~Qi~kQL~KLid 74 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--DDQ---RLEQMISQIEKLED 74 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--Cch---HHHHHHHHHhCCcC
Confidence 345788889999999999999999999999998887654 4444555543 322 47888888877654
No 104
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=85.75 E-value=2.4 Score=45.73 Aligned_cols=51 Identities=12% Similarity=0.249 Sum_probs=44.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCC
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEG 301 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~ 301 (329)
+.|+|.+.+++|+|.+|+.+|-+.++.|.++++... ++.+...|.++|.+-
T Consensus 611 v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~ 662 (683)
T TIGR00691 611 VDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNY 662 (683)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCH
Confidence 589999999999999999999999999999999876 577777888888753
No 105
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=85.65 E-value=4.3 Score=35.24 Aligned_cols=67 Identities=12% Similarity=0.206 Sum_probs=53.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCEEEEEEEEEecCCCccCCHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVS-TVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQI 317 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvS-t~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~i 317 (329)
..+.+.+...+|-|.|+++++++-..++.|++.+=+ ..+++.-.++.+.... --.++++|..+|..+
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ss--m~~~V~~ii~kl~k~ 138 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSS--MEKDVDKIIEKLRKV 138 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchh--hhhhHHHHHHHHhcc
Confidence 445777888999999999999999999999999876 5699887777777652 223678888887764
No 106
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=85.18 E-value=5.8 Score=46.53 Aligned_cols=73 Identities=16% Similarity=0.295 Sum_probs=59.3
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-----DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEIE 322 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-----~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~~ 322 (329)
+.+.++|....++..|++||-.|+++||.|+.-.--.+ ....+|.|.+....+... ..++++..+.+++..+.
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~-~~~~~~~~~~~a~~~v~ 565 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDAL-DLDDIRERFEEAFEAVW 565 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccc-cHHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999999998764332 225678999998877644 68889988888888764
No 107
>PRK08198 threonine dehydratase; Provisional
Probab=84.06 E-value=5.6 Score=39.76 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=47.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 248 ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-----DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 248 e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-----~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
+..+.+.|.-+.+||.|.++++.|-+.|..|+..+.... .+.+..++.+++.+.. ..++|.++|.+
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~---~~~~l~~~L~~ 395 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPE---HIEEILDALRD 395 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 455688899999999999999999999999998887642 3556666666663221 24555555543
No 108
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.75 E-value=6.4 Score=32.95 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=44.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEecCCCccCCHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQ-MVLYSVSVKVEEGSQLNTVDEIAAAVHQI 317 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~-~vl~s~~vKv~e~~~l~s~~eI~~aL~~i 317 (329)
.|-+..+++||.|.++|..|..+|+.+.+...-...+ .--|.|.+.++.. .+++..+|..+
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~-----~~~~~~aL~~L 104 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH-----RSDLLQLISSL 104 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC-----HHHHHHHHHHH
Confidence 3344447899999999999999999999999877633 3347888887632 23455555444
No 109
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=83.10 E-value=3.3 Score=30.21 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=41.1
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVST--VDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt--~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
+-|....+||.+.+|.+.|.++|+.|.+..+.. .++.....|.+.. . ...++.++|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~--~----~~~~~~~~l~~ 61 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE--P----VPDEVLEELRA 61 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC--C----CCHHHHHHHHc
Confidence 345778999999999999999999998887655 3566555555543 1 13455555544
No 110
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=82.59 E-value=2.4 Score=40.32 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=46.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCchhhhHHHHHHHHHHHHHHHH
Q 020210 128 NQRMTHIAVERNRRKQMNEYLAILRSLMPPS-YVQRGDQASVIGGSINFVKELEQLLQ 184 (329)
Q Consensus 128 ~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~-~~~k~dKasIL~~AI~YIk~Lq~~v~ 184 (329)
.+|..-+..||+|=..+|..|..||..||.. ...|..|...|.-|-.||--|-..++
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 3466778999999999999999999999982 13456777789999999988876654
No 111
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=82.06 E-value=7.9 Score=38.32 Aligned_cols=67 Identities=13% Similarity=0.335 Sum_probs=47.9
Q ss_pred eCCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 247 AESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-----DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 247 ~e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-----~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
.+..+.|.|.-+.+||.|.+|++.|.+.+..|++...... .+.+...|.++..+.. ..++|.++|.+
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~---~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKE---HLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 3455688889999999999999999999999999876621 3455566666654321 24566666544
No 112
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=79.90 E-value=2.4 Score=37.45 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHHHHHHHHHH
Q 020210 136 VERNRRKQMNEYLAILRSLMPPSYVQRGDQASVIGGSINFVKELEQ 181 (329)
Q Consensus 136 ~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~ 181 (329)
.||.|-+++++.+.-|+.|+|.+...++.+.--|.-+-+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 5999999999999999999999655554444446666666666554
No 113
>PRK06382 threonine dehydratase; Provisional
Probab=79.56 E-value=8.6 Score=38.63 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=46.1
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEE----ee-CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 248 ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVS----TV-DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 248 e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvS----t~-~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
+..+.|.|.-+.+||.|.+|++.|.+++++|++..+. .. .+.....|+++..+.. ..++|.++|.+
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~---~~~~v~~~L~~ 398 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQD---HLDRILNALRE 398 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 3446788888999999999999999999999988764 22 3455566666654211 23456666544
No 114
>PRK08526 threonine dehydratase; Provisional
Probab=76.26 E-value=12 Score=37.77 Aligned_cols=66 Identities=8% Similarity=0.239 Sum_probs=48.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-----CEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 248 ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD-----QMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 248 e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~-----~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
+..+.+.|.-+.+||.|.++++.|-+.+.+|++....... +.+...+.++..+.. -.++|.++|.+
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKE---HQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 4557889999999999999999999999999999886542 335556666665332 23555555543
No 115
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=74.73 E-value=17 Score=39.45 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=55.0
Q ss_pred CCeeEEEEEe-CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 248 ESHANIKILT-KKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 248 e~~~~IkI~c-~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
..+-.+.|.. ++++|.|.++...|--+|+.|.++++.+ ++..+..|.|...-|... ....+.+.+...+
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~ 613 (693)
T PRK00227 544 EEDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDF-DPQEFLQAYKSGV 613 (693)
T ss_pred ccCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCC-ChHHHHHHHHHhh
Confidence 3334555555 9999999999999999999999999999 888888898887655544 6777777776654
No 116
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=73.61 E-value=24 Score=25.03 Aligned_cols=34 Identities=3% Similarity=0.163 Sum_probs=26.3
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 020210 252 NIKILTK---KRPRQLLKMVASFQNLRLSVLHLNVST 285 (329)
Q Consensus 252 ~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~anvSt 285 (329)
.|.|.+. ..++.+.+|+++|.+.++.|.-...+.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555553 468999999999999999997765544
No 117
>PRK11899 prephenate dehydratase; Provisional
Probab=71.78 E-value=34 Score=33.00 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=48.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
.|-+..+++||.|.++|..|...|+.......-.. +...-|.|.+.++... .-..+++||.++-
T Consensus 196 sl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~---~d~~v~~aL~~l~ 260 (279)
T PRK11899 196 TFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP---EDRNVALALEELR 260 (279)
T ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC---CCHHHHHHHHHHH
Confidence 34444478999999999999999999999998877 4445689999987542 2245666666653
No 118
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.03 E-value=39 Score=26.22 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=40.7
Q ss_pred EEEEEe---CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHHH
Q 020210 252 NIKILT---KKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEIE 322 (329)
Q Consensus 252 ~IkI~c---~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~~ 322 (329)
+|.|.. ...+|.+.+|++.|.+.|+.|-.... .... .+|.++-.+. .+.+.|.++|+++...++
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~s--ISftV~~sd~---~~~~~~~~~l~~~~~~~~ 69 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVS--ISLTLDPSKL---WSRELIQQELDHVVEELE 69 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCE--EEEEEEhhhh---hhhhhHHHHHHHHHHHHH
Confidence 455554 34689999999999999999988853 2222 4555553322 134555556666665554
No 119
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=70.59 E-value=2.8 Score=45.04 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=53.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020210 128 NQRMTHIAVERNRRKQMNEYLAILRSLMPPSY---VQRGDQASVIGGSINFVKELEQLLQSMEAQKRNTS 194 (329)
Q Consensus 128 ~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~---~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~~ 194 (329)
+++++|+.+|.+||..++-.|..|.++.-++. ..|+.+..-+...+.||..++++...+.++-..++
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr 719 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLR 719 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhh
Confidence 56799999999999999999999999887631 12455666688999999999988877766555443
No 120
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=68.66 E-value=25 Score=31.37 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=41.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEEec
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV---DQMVLYSVSVKVE 299 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~---~~~vl~s~~vKv~ 299 (329)
+.+-|.-+.+||+|+++++=|-+.|..|++.-.+.. ++++-.-+.++++
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 456777899999999999999999999999888876 7787666666665
No 121
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.22 E-value=38 Score=24.11 Aligned_cols=36 Identities=8% Similarity=0.172 Sum_probs=26.5
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 020210 252 NIKILTK---KRPRQLLKMVASFQNLRLSVLHLNVSTVD 287 (329)
Q Consensus 252 ~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~anvSt~~ 287 (329)
.|.|... .+++.+.+++++|.+.++.|.-...+..+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~ 41 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASE 41 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 3444443 46899999999999999999766654433
No 122
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=66.23 E-value=25 Score=26.80 Aligned_cols=48 Identities=15% Similarity=0.296 Sum_probs=35.2
Q ss_pred cceEEEEEeCCeeEEEEEeCCCC------ChHHHHHHHHHhCCCeEEEEEEEee
Q 020210 239 VADIEVNMAESHANIKILTKKRP------RQLLKMVASFQNLRLSVLHLNVSTV 286 (329)
Q Consensus 239 ~~~VeV~~~e~~~~IkI~c~~rp------g~L~~Il~aLe~lgL~Vv~anvSt~ 286 (329)
...|.+++.++.+.|.|.+.+.. ..+-.|-+.|...|+.|.+++|...
T Consensus 26 ~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 26 SVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp -EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred cEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 35677777889999999997642 3467888999999999999888754
No 123
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=63.95 E-value=44 Score=22.84 Aligned_cols=34 Identities=3% Similarity=0.251 Sum_probs=26.7
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 020210 252 NIKILTK---KRPRQLLKMVASFQNLRLSVLHLNVST 285 (329)
Q Consensus 252 ~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~anvSt 285 (329)
.|.|.+. ..++.+.++++.|.+.++.|.....+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4556543 568899999999999999998876644
No 124
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=62.35 E-value=23 Score=33.60 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=10.5
Q ss_pred hhhhHH-HHHHHHHHHHHHHH
Q 020210 131 MTHIAV-ERNRRKQMNEYLAI 150 (329)
Q Consensus 131 ~~h~~~-ER~RR~~mn~~~~~ 150 (329)
.+|..- |+--|+|++++..+
T Consensus 61 L~HLS~EEK~~RrKLKNRVAA 81 (292)
T KOG4005|consen 61 LDHLSWEEKVQRRKLKNRVAA 81 (292)
T ss_pred hcccCHHHHHHHHHHHHHHHH
Confidence 455443 34456666665543
No 125
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=61.78 E-value=54 Score=23.18 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 020210 259 KRPRQLLKMVASFQNLRLSVLHLNV 283 (329)
Q Consensus 259 ~rpg~L~~Il~aLe~lgL~Vv~anv 283 (329)
.++|...+|++.|++.++.|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 4688999999999999999999853
No 126
>PRK11898 prephenate dehydratase; Provisional
Probab=61.35 E-value=46 Score=31.97 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=45.0
Q ss_pred EEEEEeCC-CCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEecCCCccCCHHHHHHHHHHH
Q 020210 252 NIKILTKK-RPRQLLKMVASFQNLRLSVLHLNVSTVDQ-MVLYSVSVKVEEGSQLNTVDEIAAAVHQI 317 (329)
Q Consensus 252 ~IkI~c~~-rpg~L~~Il~aLe~lgL~Vv~anvSt~~~-~vl~s~~vKv~e~~~l~s~~eI~~aL~~i 317 (329)
.|-+..++ +||.|.++|..|...|+.+++...-...+ .--|.|.+.++... +-..++++|.++
T Consensus 198 slif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~---~~~~~~~al~~L 262 (283)
T PRK11898 198 SLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHI---DDVLVAEALKEL 262 (283)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccC---CCHHHHHHHHHH
Confidence 34445555 59999999999999999999999887643 34488888886432 223566666554
No 127
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=61.09 E-value=24 Score=38.36 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=47.4
Q ss_pred ceEEEEEeC---C--eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecC
Q 020210 240 ADIEVNMAE---S--HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEE 300 (329)
Q Consensus 240 ~~VeV~~~e---~--~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e 300 (329)
.-|+|.=.. . .+.|.|...+++|+|.+|+++|-+.+..|++++..+. ++.+...|.++|.+
T Consensus 612 r~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n 678 (701)
T COG0317 612 RVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN 678 (701)
T ss_pred eEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc
Confidence 456665322 2 3578888999999999999999999999999999886 45555677777764
No 128
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=59.88 E-value=46 Score=33.60 Aligned_cols=66 Identities=5% Similarity=0.068 Sum_probs=45.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 248 ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 248 e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
+..+.+++.-+.+||.|.++++.+-..+.+|++.+.-.. -+.....+.+++.+.. -.++|.++|.+
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~---h~~~i~~~L~~ 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKE---DFAGLLERMAA 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 456789999999999999999977777779998887632 2333445666665422 24666666654
No 129
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.17 E-value=60 Score=22.85 Aligned_cols=34 Identities=9% Similarity=0.137 Sum_probs=25.8
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 020210 252 NIKILTK---KRPRQLLKMVASFQNLRLSVLHLNVST 285 (329)
Q Consensus 252 ~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~anvSt 285 (329)
.|.|.+. ..++.+.+++++|.+.++.|.-...+.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3445553 478999999999999999997666543
No 130
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=58.58 E-value=55 Score=31.74 Aligned_cols=64 Identities=11% Similarity=0.215 Sum_probs=48.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD-QMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~-~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
.|-+..+++||.|+++|..|...|++.....+-... ..--|.|.+.++.... -..+++||.++-
T Consensus 196 sl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~---~~~v~~AL~el~ 260 (279)
T COG0077 196 SLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHID---DPLVKEALEELK 260 (279)
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcC---cHhHHHHHHHHH
Confidence 444445699999999999999999999999987764 4456899999875532 256666666653
No 131
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.25 E-value=84 Score=23.91 Aligned_cols=56 Identities=11% Similarity=0.069 Sum_probs=34.9
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHH
Q 020210 258 KKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLE 320 (329)
Q Consensus 258 ~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r 320 (329)
...+|.+.+|++.|.+.++.|-.... .... .+|.+.-.+ ...-+.++++|.+-+.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~--s~~~--iSftv~~~d---~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITT--SEIS--VALTLDNTG---STSDQLLTQALLKELSQ 67 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEee--cCCE--EEEEEeccc---cchhHHHHHHHHHHHHh
Confidence 45789999999999999999988853 2222 455555322 11123444455555554
No 132
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=57.05 E-value=46 Score=22.18 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEe
Q 020210 260 RPRQLLKMVASFQNLRLSVLHLNVST 285 (329)
Q Consensus 260 rpg~L~~Il~aLe~lgL~Vv~anvSt 285 (329)
.++.+.++++.|.+.++.|.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 68899999999999999998776543
No 133
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=56.28 E-value=76 Score=25.31 Aligned_cols=64 Identities=11% Similarity=0.251 Sum_probs=48.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLE 320 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r 320 (329)
.+.|....+|+.|.+++.+.+--|+.|...|.++. .+.+ .|.+-|..+ . +++-+...|.++..=
T Consensus 5 qldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~--nie~tV~s~--R-~~~lL~~QLeKl~Dv 70 (86)
T COG3978 5 QLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNA--NIELTVDSD--R-SVDLLTSQLEKLYDV 70 (86)
T ss_pred EEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccc--eEEEEEcCC--C-ChHHHHHHHHHHccc
Confidence 45667788999999999999999999999999987 5553 344444322 3 678888888887653
No 134
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=55.42 E-value=1e+02 Score=29.03 Aligned_cols=49 Identities=6% Similarity=0.006 Sum_probs=35.9
Q ss_pred CeeEEEEEeCCCCC--hHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEE
Q 020210 249 SHANIKILTKKRPR--QLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVK 297 (329)
Q Consensus 249 ~~~~IkI~c~~rpg--~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vK 297 (329)
....++|.|.+.+. ....+++.|++.++.+.+.++... ++.+..+..+.
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~ 193 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELV 193 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEE
Confidence 35688999988664 578888999999999999999654 34444333333
No 135
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=55.09 E-value=76 Score=22.88 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=22.4
Q ss_pred EEEEeC---CCCChHHHHHHHHHhCCCeEE
Q 020210 253 IKILTK---KRPRQLLKMVASFQNLRLSVL 279 (329)
Q Consensus 253 IkI~c~---~rpg~L~~Il~aLe~lgL~Vv 279 (329)
|.|.+. ..+|.+.+++++|.+.++.|.
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 444443 579999999999999999996
No 136
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=54.16 E-value=67 Score=32.40 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=46.6
Q ss_pred EEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 255 ILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQ-MVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 255 I~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~-~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
+..+++||.|.++|..|...|+.......-...+ ..-|.|.+.++... .-..+..+|.++-
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~---~d~~~~~aL~~l~ 363 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANL---RSAEMQKALKELG 363 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCC---CCHHHHHHHHHHH
Confidence 3446899999999999999999999999886644 45699999988542 2245666666653
No 137
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.56 E-value=33 Score=26.96 Aligned_cols=51 Identities=14% Similarity=0.270 Sum_probs=38.5
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEecCCCc
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVST--VDQMVLYSVSVKVEEGSQ 303 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt--~~~~vl~s~~vKv~e~~~ 303 (329)
|+++-+-||.++.++--||..|++-|.++.|.. .+++--....+...+++.
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~ 55 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDR 55 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCc
Confidence 455566799999999999999999999999964 466655555555555543
No 138
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=52.52 E-value=16 Score=23.98 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 020210 136 VERNRRKQMNEYLAILRS 153 (329)
Q Consensus 136 ~ER~RR~~mn~~~~~Lrs 153 (329)
.=|+||++++.++..||+
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 338999999999999986
No 139
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=52.13 E-value=92 Score=23.61 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=25.4
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEE
Q 020210 252 NIKILTK---KRPRQLLKMVASFQNLRLSVLHLNV 283 (329)
Q Consensus 252 ~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~anv 283 (329)
.|.|.+. ..+|.+.+|++.|.+.++.|-....
T Consensus 3 ~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 3 VINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred EEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe
Confidence 3555553 3689999999999999999988854
No 140
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=51.13 E-value=84 Score=23.52 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=22.0
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEE
Q 020210 258 KKRPRQLLKMVASFQNLRLSVLHLN 282 (329)
Q Consensus 258 ~~rpg~L~~Il~aLe~lgL~Vv~an 282 (329)
...++.+.+|+++|.+.++.|....
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEE
Confidence 4468999999999999999998775
No 141
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.11 E-value=83 Score=22.04 Aligned_cols=34 Identities=6% Similarity=0.207 Sum_probs=25.6
Q ss_pred EEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 020210 252 NIKILTK---KRPRQLLKMVASFQNLRLSVLHLNVST 285 (329)
Q Consensus 252 ~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~anvSt 285 (329)
.|.|.+. ..++.+.+++++|.+.++.|.-.+.+.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3455553 468899999999999999997666544
No 142
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=49.45 E-value=48 Score=29.68 Aligned_cols=66 Identities=12% Similarity=0.262 Sum_probs=49.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
.+.+...+.||.|.++...+-..|+.+-+..+... .+....++.+.. +.. ..+.|...|++++..+
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-~~~---~~EQi~kQL~kLidV~ 73 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-DEQ---VLEQIIKQLNKLIDVL 73 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-Ccc---hHHHHHHHHHhhccce
Confidence 45566679999999999999999999999888765 333334555554 222 4799999999988754
No 143
>PRK08639 threonine dehydratase; Validated
Probab=49.08 E-value=86 Score=31.67 Aligned_cols=66 Identities=8% Similarity=0.097 Sum_probs=44.0
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC--EEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 248 ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQ--MVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 248 e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~--~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
+..+.++|.-+.+||.|.++++.+-..+-+|+..+.....+ .....+.+++.+.. ..++|.++|.+
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~---h~~~i~~~L~~ 401 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAE---DYDGLIERMEA 401 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 45678999999999999999996655555888877653222 22234555555322 34677777765
No 144
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.62 E-value=1.3e+02 Score=23.39 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=39.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC---EEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQ---MVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~---~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
+++.|.-+.|||.|.+.++.|-. +.+|...+....++ .++..|. +.+. ..+++.+.|.+
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vlvGi~--~~~~----~~~~l~~~l~~ 63 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYGRVLVGIQ--VPDA----DLDELKERLDA 63 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCceeEEEEEE--eChH----HHHHHHHHHHH
Confidence 56778889999999999999933 78888888876533 3444444 3321 34566665544
No 145
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=48.25 E-value=94 Score=32.04 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=38.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEecC
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD-QMVLYSVSVKVEE 300 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~-~~vl~s~~vKv~e 300 (329)
.|-+..++++|.|.++|..+...|+.+.+...-... ..--|.|.+.++.
T Consensus 18 SLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg 67 (436)
T TIGR01268 18 SLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDE 67 (436)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEec
Confidence 444445778999999999999999999999987653 3334788888764
No 146
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=47.52 E-value=30 Score=37.63 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=48.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
.+++|....|+|+|..|+.+|. +|.-+.++|.|..++-.|.++ ++. .-..+.++|..++
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~--~~~---~r~~~~~~~~~~~ 690 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK--PGF---DRATVERDVTRVL 690 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec--Ccc---cHHHHHHHHHHHH
Confidence 5889999999999999999999 999999999999998888888 222 3456666666654
No 147
>PRK09224 threonine dehydratase; Reviewed
Probab=46.56 E-value=1.3e+02 Score=31.21 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=42.6
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 248 ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 248 e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
+..+.+.|.-+.+||.|.++++.|- +..|+..+.... .+..-..+.+++.+... ..++|.++|.+
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~--~~~~i~~~L~~ 391 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQE--ERAEIIAQLRA 391 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhh--HHHHHHHHHHH
Confidence 4568899999999999999999998 566666666543 22333445556554321 14566666643
No 148
>PLN02317 arogenate dehydratase
Probab=46.29 E-value=98 Score=31.36 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=37.5
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCE---------------EEEEEEEEecC
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQM---------------VLYSVSVKVEE 300 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~---------------vl~s~~vKv~e 300 (329)
|-+.-+.+||.|.++|..|...++.+.+...-..-.. .-|.|.+.++.
T Consensus 286 ivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg 348 (382)
T PLN02317 286 IVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEA 348 (382)
T ss_pred EEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEc
Confidence 3333467899999999999999999999998765333 44888888764
No 149
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.66 E-value=1.3e+02 Score=22.77 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.5
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEE
Q 020210 258 KKRPRQLLKMVASFQNLRLSVLHLNV 283 (329)
Q Consensus 258 ~~rpg~L~~Il~aLe~lgL~Vv~anv 283 (329)
...+|.+.+|+++|.+.++.|-....
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 34689999999999999999988853
No 150
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=44.83 E-value=34 Score=25.23 Aligned_cols=33 Identities=12% Similarity=0.311 Sum_probs=26.9
Q ss_pred eeEEEEEeC----CCCChHHHHHHHHHhCCCeEEEEE
Q 020210 250 HANIKILTK----KRPRQLLKMVASFQNLRLSVLHLN 282 (329)
Q Consensus 250 ~~~IkI~c~----~rpg~L~~Il~aLe~lgL~Vv~an 282 (329)
-..|.|.+. ..+|.+.++++.|.+.|+.|...+
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 346777776 479999999999999999998877
No 151
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=44.50 E-value=75 Score=27.29 Aligned_cols=39 Identities=8% Similarity=0.325 Sum_probs=34.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMV 290 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~v 290 (329)
.|.|...++||-|..+...|.+.|+.+--.++.-.+++-
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFG 43 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFG 43 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcc
Confidence 577888999999999999999999999999988777663
No 152
>PRK12483 threonine dehydratase; Reviewed
Probab=44.19 E-value=1.4e+02 Score=31.33 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=42.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCCCccCCHHHHHHHHH
Q 020210 248 ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEGSQLNTVDEIAAAVH 315 (329)
Q Consensus 248 e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~~~l~s~~eI~~aL~ 315 (329)
+..+.+.|.-+.+||.|.+++..|-+. +|+..+.... ....-..+.+++.+.... .++|.++|.
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~--~~~i~~~l~ 407 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDP--RAQLLASLR 407 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhh--HHHHHHHHH
Confidence 456789999999999999999999887 7777776543 223444555555433211 145555554
No 153
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.14 E-value=87 Score=22.72 Aligned_cols=31 Identities=6% Similarity=0.005 Sum_probs=25.3
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCE
Q 020210 259 KRPRQLLKMVASFQNLRLSVLHLNVSTVDQM 289 (329)
Q Consensus 259 ~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~ 289 (329)
+.++.+.+++++|.+.++.|.-....+.+..
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~s 42 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVN 42 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccce
Confidence 4578999999999999999987776665544
No 154
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=43.02 E-value=91 Score=32.39 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=37.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEE-EEEEEEec
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQ-MVL-YSVSVKVE 299 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~-~vl-~s~~vKv~ 299 (329)
.|-+..++++|.|.++|..|+..|+.++|...-.... ..- |.|.+.++
T Consensus 33 SLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E 82 (464)
T TIGR01270 33 SIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE 82 (464)
T ss_pred EEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE
Confidence 3444457789999999999999999999999876633 333 77778876
No 155
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=42.22 E-value=1.1e+02 Score=27.77 Aligned_cols=60 Identities=7% Similarity=0.072 Sum_probs=42.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAV 314 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL 314 (329)
-|.|...++||.|.+|--.+-++|..|+.++--.-++--.-.++.++++.. +.+.|...|
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~---d~e~l~~~l 63 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID---DFEKLLERL 63 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC---CHHHHHHHh
Confidence 467788899999999999999999999999876543322345556666443 345554444
No 156
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=41.80 E-value=1.3e+02 Score=31.38 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=42.3
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 248 ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 248 e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
+..+.+.|.-+.+||.|.++++.|-. ..|+..+.... .+..-..+.+++.+.. ..++|.++|.+
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~~~---~~~~l~~~L~~ 387 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSNPQ---ERQEILARLND 387 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 46789999999999999999999987 46666666533 2233344555555322 24556655543
No 157
>PRK00907 hypothetical protein; Provisional
Probab=39.09 E-value=97 Score=25.04 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=39.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCC----eEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHH
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRL----SVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVH 315 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL----~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~ 315 (329)
++-|||....++++.-.|++.++.+.= .-+..+-|..|..+-.++.+.+....+ ++.|.++|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQ---ld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQ---YDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHH---HHHHHHHHh
Confidence 357888888999999999999997753 333334455555544555555543322 344544443
No 158
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=37.35 E-value=1.5e+02 Score=20.94 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEE
Q 020210 258 KKRPRQLLKMVASFQNLRLSVLHLNV 283 (329)
Q Consensus 258 ~~rpg~L~~Il~aLe~lgL~Vv~anv 283 (329)
+..+|.+.++++.|.+.++.|.-...
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 56799999999999999999975543
No 159
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=36.70 E-value=1.1e+02 Score=22.38 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=23.5
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 020210 260 RPRQLLKMVASFQNLRLSVLHLNVSTVD 287 (329)
Q Consensus 260 rpg~L~~Il~aLe~lgL~Vv~anvSt~~ 287 (329)
++|.+.+++++|.+.++.|.-.+.+..+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~ 41 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN 41 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe
Confidence 6789999999999999999877765543
No 160
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.65 E-value=1.4e+02 Score=20.48 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=21.7
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 020210 259 KRPRQLLKMVASFQNLRLSVLHLNV 283 (329)
Q Consensus 259 ~rpg~L~~Il~aLe~lgL~Vv~anv 283 (329)
..++.+.+++++|.+.++.|.-.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEc
Confidence 4688999999999999999977763
No 161
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.48 E-value=93 Score=22.90 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 020210 136 VERNRRKQMNEYLAILRSLMPPSYVQRGDQASVIGGSINFVKELEQLLQSM 186 (329)
Q Consensus 136 ~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L 186 (329)
.=|.-|-.+.+.+..+..++-. .+ .++|.+||+++-+.++.+
T Consensus 15 ~lR~~RHD~~NhLqvI~gllql---g~------~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQL---GK------YEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---T-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC---CC------HHHHHHHHHHHHHHHHHH
Confidence 3388889999999999999865 34 567899999999888876
No 162
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=35.00 E-value=1.5e+02 Score=20.32 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 020210 259 KRPRQLLKMVASFQNLRLSVLHLNV 283 (329)
Q Consensus 259 ~rpg~L~~Il~aLe~lgL~Vv~anv 283 (329)
..++.+.++++.|.+.++.|.-.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4689999999999999999977763
No 163
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=33.67 E-value=1.7e+02 Score=26.53 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=48.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CC--EEEE--EEEEEecCCCccCCHHHHHHHHHHHHHHHH
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQ--MVLY--SVSVKVEEGSQLNTVDEIAAAVHQILLEIE 322 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~--~vl~--s~~vKv~e~~~l~s~~eI~~aL~~il~r~~ 322 (329)
+.++|...+|||++-++.+.|..+|+.+.+....+. .+ .-++ .+.+.++-++ +++.|..++..+-..+.
T Consensus 93 v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~---~i~~l~~~f~al~~~L~ 167 (176)
T COG2716 93 VWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL---SISALRDAFEALCDELN 167 (176)
T ss_pred EEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcC---cHHHHHHHHHHHHHhhc
Confidence 467788899999999999999999998887776543 22 2222 3344444433 67888888877665443
No 164
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=33.51 E-value=1e+02 Score=29.29 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCC---------------------CchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020210 141 RKQMNEYLAILRSLMPPSYVQR---------------------GDQASVIGGSINFVKELEQLLQSMEAQKRNT 193 (329)
Q Consensus 141 R~~mn~~~~~LrslvP~~~~~k---------------------~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~ 193 (329)
|+-|...|.+|+..=.. .| +-++.||.|+ =||.|++||++||.++...
T Consensus 6 ~qLI~~lf~RL~~ae~~---prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~--AL~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQ---PRDPEAEALIAQALARQPDAPYYLAQTVLVQEQ--ALKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHHHHHHHhccCC---CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 67889999999887665 22 1122233332 2788999999999998653
No 165
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=33.37 E-value=2.1e+02 Score=28.37 Aligned_cols=41 Identities=5% Similarity=0.162 Sum_probs=32.7
Q ss_pred EEEeCCeeEEEEEe---CCCCChHHHHHHHHHhCCCeEEEEEEE
Q 020210 244 VNMAESHANIKILT---KKRPRQLLKMVASFQNLRLSVLHLNVS 284 (329)
Q Consensus 244 V~~~e~~~~IkI~c---~~rpg~L~~Il~aLe~lgL~Vv~anvS 284 (329)
|...++-+.|.|.. ..++|.+.+++.+|.+.++.|.....+
T Consensus 254 I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~ 297 (401)
T TIGR00656 254 IALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT 297 (401)
T ss_pred EEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC
Confidence 34456677888884 567999999999999999999877654
No 166
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=32.93 E-value=29 Score=27.05 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=46.8
Q ss_pred EEEEeCC-CCChHHHHHHHHHhCCCeEEEEEEEeeCCEE---------EEEEEEEecCCCccCCHHHHHHHHHHHHHHHH
Q 020210 253 IKILTKK-RPRQLLKMVASFQNLRLSVLHLNVSTVDQMV---------LYSVSVKVEEGSQLNTVDEIAAAVHQILLEIE 322 (329)
Q Consensus 253 IkI~c~~-rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~v---------l~s~~vKv~e~~~l~s~~eI~~aL~~il~r~~ 322 (329)
|.|..++ ..+.+..|-+.|-++|+.|.+.+- ..+++ .+++.+.|.... .+.+.++++|.++-..+.
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~~~~--~~~~~lr~~L~~la~elg 77 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVRGQP--ADLEALRAALLELASELN 77 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH--hhccccccccCCCCcEEEEEEEeCCC--CCHHHHHHHHHHHhcccC
Confidence 4566667 889999999999999998877654 22222 456666666333 378999999987765543
No 167
>PRK02047 hypothetical protein; Provisional
Probab=31.39 E-value=1.4e+02 Score=23.77 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=40.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhC--CC--eEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHH
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNL--RL--SVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVH 315 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~l--gL--~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~ 315 (329)
+..+||.....+.+...|++.++.+ ++ ..++.+-|..|..+-+++.+.|....+ ++.|-++|.
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq---~~~iY~~L~ 82 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQ---LDNIYRALT 82 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHH---HHHHHHHHh
Confidence 3567888888888888888888766 43 335556566676766677777654332 344444443
No 168
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=30.81 E-value=49 Score=29.94 Aligned_cols=62 Identities=10% Similarity=0.121 Sum_probs=48.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
++|.....++||+.-.|.++..+.|-.++.+.++.+|+. +++.+++...- -.++.|+++|..
T Consensus 6 LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~--~a~i~lisgs~--dav~~le~~l~~ 67 (176)
T COG2716 6 LVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEE--FAGIMLISGSW--DAVTLLEATLPL 67 (176)
T ss_pred EEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcc--eeEEEEEeeCH--HHHHHHHHHhhc
Confidence 688999999999999999999999999999999999998 55556655221 135666666543
No 169
>PLN02550 threonine dehydratase
Probab=30.63 E-value=2.1e+02 Score=30.76 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=34.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEec
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVE 299 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~ 299 (329)
.+.+.|.-+.+||.|.++++.|-.. +|++.+.... -+.....+.+++.
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~ 465 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVH 465 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeC
Confidence 3678888999999999999999875 7777766542 2233344555544
No 170
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=30.51 E-value=2.1e+02 Score=21.06 Aligned_cols=29 Identities=7% Similarity=0.244 Sum_probs=23.8
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 020210 259 KRPRQLLKMVASFQNLRLSVLHLNVSTVD 287 (329)
Q Consensus 259 ~rpg~L~~Il~aLe~lgL~Vv~anvSt~~ 287 (329)
..++.+.+++++|.+.++.|.-.+.+..+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~~~~ 41 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQASSE 41 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 46889999999999999999877665333
No 171
>PLN02705 beta-amylase
Probab=29.84 E-value=2.1e+02 Score=31.04 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=18.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhc
Q 020210 130 RMTHIAVERNRRKQMNEYLAILRSL 154 (329)
Q Consensus 130 r~~h~~~ER~RR~~mn~~~~~Lrsl 154 (329)
|.....+||+||.--..-|.-||..
T Consensus 85 ~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 85 KERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 5567889999997666666666654
No 172
>PRK00341 hypothetical protein; Provisional
Probab=29.51 E-value=1.4e+02 Score=23.92 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=38.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEE----EEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHH
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHL----NVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVH 315 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~a----nvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~ 315 (329)
+-+||.....+++...|++.++.+. ++-.. +-|..|..+-+++.+.+.... -++.|-++|.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~---q~~~iy~~L~ 82 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDED---QLQDINSALR 82 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHH---HHHHHHHHHh
Confidence 5678888889999999999998664 44333 334445554467777765433 2345555443
No 173
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=29.42 E-value=2.7e+02 Score=21.51 Aligned_cols=57 Identities=16% Similarity=0.371 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhCCCeE-----------EEEEEEeeC---------CEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHHH
Q 020210 263 QLLKMVASFQNLRLSV-----------LHLNVSTVD---------QMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEIE 322 (329)
Q Consensus 263 ~L~~Il~aLe~lgL~V-----------v~anvSt~~---------~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~~ 322 (329)
.+.+++..|+.+.... .+++++.+. +.+-..+.++...+. +.++|.++|.+++.++-
T Consensus 32 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~~~n~ip~~a~~~~~~R~~p~~---~~~~i~~~i~~~~~~~~ 108 (111)
T PF07687_consen 32 AAARFLNALEELEFEWAFRPEEFFPGPPTLNIGSIEGGTAPNVIPDEATLTVDIRYPPGE---DLEEIKAEIEAAVEKIA 108 (111)
T ss_dssp HHHHHHHHHHHTTCHBTSTHHHCTCTSEEEEEEEEEEESSTTEESSEEEEEEEEEESTCH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccccccccccceeEeecccCCcCCEECCEEEEEEEEECCCcc---hHHHHHHHHHHHHHHhh
Confidence 5788888888884332 455555432 344455555555543 67999999999988764
No 174
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=29.25 E-value=67 Score=28.29 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhc
Q 020210 130 RMTHIAVERNRRKQMNEYLAILRSL 154 (329)
Q Consensus 130 r~~h~~~ER~RR~~mn~~~~~Lrsl 154 (329)
|.+...+||+||----.-|.-||..
T Consensus 12 rEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 12 RENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456779999996666667777764
No 175
>PRK09034 aspartate kinase; Reviewed
Probab=28.91 E-value=2.4e+02 Score=28.82 Aligned_cols=42 Identities=10% Similarity=0.213 Sum_probs=32.1
Q ss_pred EEEeCCeeEEEEEe---CCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 020210 244 VNMAESHANIKILT---KKRPRQLLKMVASFQNLRLSVLHLNVST 285 (329)
Q Consensus 244 V~~~e~~~~IkI~c---~~rpg~L~~Il~aLe~lgL~Vv~anvSt 285 (329)
|....+-+.|.|.. ...++.+.+++++|.+.++.|.-...++
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 44445666777754 3578999999999999999998776544
No 176
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=28.90 E-value=3e+02 Score=27.31 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=27.1
Q ss_pred CCeeEEEEEeC---CCCChHHHHHHHHHhCCCeEEEE
Q 020210 248 ESHANIKILTK---KRPRQLLKMVASFQNLRLSVLHL 281 (329)
Q Consensus 248 e~~~~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~a 281 (329)
.+-+.|.|... .+||.+.+++++|.+.|+.|+..
T Consensus 335 ~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i 371 (401)
T TIGR00656 335 EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI 371 (401)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence 44556666663 58999999999999999999853
No 177
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=28.37 E-value=4.9e+02 Score=24.18 Aligned_cols=64 Identities=5% Similarity=0.232 Sum_probs=41.2
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 248 ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 248 e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
.....+.|.|... .+.++.+.|+++++.+.+.++...++.....+.+++... . +.+++...|.+
T Consensus 142 ~~~~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~L~~ 205 (215)
T PRK09977 142 NKHYHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLHAT--T-SIEDLYRLLKG 205 (215)
T ss_pred cCcEEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEECCC--C-CHHHHHHHHhc
Confidence 3445677777644 368888999999999999998754433334455555532 2 45666555543
No 178
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.35 E-value=1.4e+02 Score=23.24 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=21.3
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEE
Q 020210 259 KRPRQLLKMVASFQNLRLSVLHLN 282 (329)
Q Consensus 259 ~rpg~L~~Il~aLe~lgL~Vv~an 282 (329)
+.-|.+.++|+.||.+|+.+-|.-
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeec
Confidence 467899999999999999998865
No 179
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.15 E-value=1.3e+02 Score=23.24 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 020210 169 IGGSINFVKELEQLLQSMEAQKRNT 193 (329)
Q Consensus 169 L~~AI~YIk~Lq~~v~~L~~~~~~~ 193 (329)
+..||+-|.-|+.++++|+.+...+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6789999999999999999875443
No 180
>PRK04998 hypothetical protein; Provisional
Probab=26.08 E-value=1.6e+02 Score=23.22 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=39.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCC--CeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHH
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLR--LSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVH 315 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lg--L~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~ 315 (329)
.-+||.....+..+..|...++.+. .+.+..+-|..|..+-+++.+.|....+ ++.|-++|.
T Consensus 16 ~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq---~~~iY~~L~ 79 (88)
T PRK04998 16 FTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQ---VETLYEELA 79 (88)
T ss_pred ceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHH---HHHHHHHHh
Confidence 4677777778888899999997763 2335556566666666777777754332 244444443
No 181
>PF14992 TMCO5: TMCO5 family
Probab=26.06 E-value=95 Score=30.17 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020210 168 VIGGSINFVKELEQLLQSMEAQKRNT 193 (329)
Q Consensus 168 IL~~AI~YIk~Lq~~v~~L~~~~~~~ 193 (329)
+..++++||+.|++.++.++.+++.+
T Consensus 145 l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 145 LCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988764
No 182
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=26.06 E-value=1.1e+02 Score=21.52 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=21.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 020210 130 RMTHIAVERNRRKQMNEYLAILRSLMPPS 158 (329)
Q Consensus 130 r~~h~~~ER~RR~~mn~~~~~LrslvP~~ 158 (329)
.+.....|=.||.+++..+..-..++|.+
T Consensus 9 SM~~ai~eT~rRR~~Q~~yN~~h~ItP~t 37 (44)
T PF12344_consen 9 SMQKAIDETNRRREIQIAYNKEHGITPKT 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 45667888899999999999999999986
No 183
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.06 E-value=2.6e+02 Score=20.18 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=18.9
Q ss_pred CCCChHHHHHHHHHhCCCeEEEE
Q 020210 259 KRPRQLLKMVASFQNLRLSVLHL 281 (329)
Q Consensus 259 ~rpg~L~~Il~aLe~lgL~Vv~a 281 (329)
..+|.+.+++.+|.+.++.++..
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~ 34 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQ 34 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEE
Confidence 57899999999999887777443
No 184
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=25.89 E-value=53 Score=26.08 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=30.8
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEE
Q 020210 248 ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV---DQMVLYSVSVK 297 (329)
Q Consensus 248 e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~---~~~vl~s~~vK 297 (329)
+.++++.|.-+.+||.|.+++..|.... +|...+..-. .+.|+..|.++
T Consensus 8 ~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~~~a~vlvgi~v~ 59 (91)
T PF00585_consen 8 GREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGDDFARVLVGIEVP 59 (91)
T ss_dssp --EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTTSCSEEEEEEE-S
T ss_pred CCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCCCeeeEEEEEEeC
Confidence 4678999999999999999999886655 2555555432 34566665543
No 185
>PRK06635 aspartate kinase; Reviewed
Probab=25.85 E-value=2.5e+02 Score=27.82 Aligned_cols=52 Identities=8% Similarity=0.197 Sum_probs=36.4
Q ss_pred EEeCCeeEEEEEe-CCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEE
Q 020210 245 NMAESHANIKILT-KKRPRQLLKMVASFQNLRLSVLHLNVSTVDQ-MVLYSVSV 296 (329)
Q Consensus 245 ~~~e~~~~IkI~c-~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~-~vl~s~~v 296 (329)
...++-+.|.|.+ ..++|.+.+++++|.+.|+.|...+.+...+ .+-++|.+
T Consensus 257 ~~~~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v 310 (404)
T PRK06635 257 AFDKDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTV 310 (404)
T ss_pred EecCCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEE
Confidence 3445556777765 3478999999999999999999876654332 33445544
No 186
>PLN02551 aspartokinase
Probab=25.74 E-value=2.9e+02 Score=29.04 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=29.5
Q ss_pred CCeeEEEEEeCC---CCChHHHHHHHHHhCCCeEEEEE
Q 020210 248 ESHANIKILTKK---RPRQLLKMVASFQNLRLSVLHLN 282 (329)
Q Consensus 248 e~~~~IkI~c~~---rpg~L~~Il~aLe~lgL~Vv~an 282 (329)
.+-+.|.|.+.. .+|.+.+|+..|.++++.|....
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is 401 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 401 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe
Confidence 445688998764 68999999999999999998884
No 187
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=25.46 E-value=1.5e+02 Score=23.16 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhhhHHHHHH-HHHHHHH
Q 020210 143 QMNEYLAILRSLMPPSYVQRGDQASVIGGSIN-FVKELEQ 181 (329)
Q Consensus 143 ~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~-YIk~Lq~ 181 (329)
.|.++|..|.+-. .| .|+-+|.+||+ ||.+++.
T Consensus 15 E~~eRL~~Ls~~t-----gr-tkayyvrEaIE~~ieemED 48 (80)
T COG4710 15 ELKERLDNLSKNT-----GR-TKAYYVREAIEAYIEEMED 48 (80)
T ss_pred HHHHHHHHHHHhc-----CC-chhHHHHHHHHHHHHHHHH
Confidence 3566666665543 23 58999999996 6776664
No 188
>PRK08210 aspartate kinase I; Reviewed
Probab=24.90 E-value=3.1e+02 Score=27.37 Aligned_cols=66 Identities=15% Similarity=0.294 Sum_probs=0.0
Q ss_pred EEEEeCCeeEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 243 EVNMAESHANIKILTK---KRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 243 eV~~~e~~~~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
.+.+.++-+.|.|... .++|.+.+++++|.+.++.|+. +++.+..+-+.+.-+ ..+...++|++.+
T Consensus 332 ~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~s~~~is~vv~~~--------~~~~a~~~Lh~~f 400 (403)
T PRK08210 332 KPSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SADSHTTIWVLVKEE--------DMEKAVNALHDAF 400 (403)
T ss_pred cEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--EecCCCEEEEEEcHH--------HHHHHHHHHHHHh
No 189
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=24.90 E-value=5.9e+02 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 020210 170 GGSINFVKELEQLLQSMEAQKRNTS 194 (329)
Q Consensus 170 ~~AI~YIk~Lq~~v~~L~~~~~~~~ 194 (329)
.+.-.-|..|+.+.+.|..+++.+.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~ 242 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLK 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677777777766666554
No 190
>PRK06291 aspartate kinase; Provisional
Probab=24.19 E-value=3.6e+02 Score=27.62 Aligned_cols=46 Identities=4% Similarity=0.142 Sum_probs=35.8
Q ss_pred EEEeCCeeEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCE
Q 020210 244 VNMAESHANIKILTK---KRPRQLLKMVASFQNLRLSVLHLNVSTVDQM 289 (329)
Q Consensus 244 V~~~e~~~~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~ 289 (329)
|+..++-+.|.|... .++|++.+++.+|.+.++.|+-....+.+..
T Consensus 392 i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~ 440 (465)
T PRK06291 392 VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVN 440 (465)
T ss_pred eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCe
Confidence 455566677888875 4789999999999999999987776565544
No 191
>PRK08818 prephenate dehydrogenase; Provisional
Probab=23.39 E-value=4.2e+02 Score=26.58 Aligned_cols=48 Identities=13% Similarity=0.229 Sum_probs=34.8
Q ss_pred EEEEEeC-CCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecC
Q 020210 252 NIKILTK-KRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEE 300 (329)
Q Consensus 252 ~IkI~c~-~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e 300 (329)
.|.+.-+ ++||.|.+|+..|-..|+.+.+..+.....- -|-|.+.+..
T Consensus 297 ~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~-~y~f~i~~~~ 345 (370)
T PRK08818 297 TLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAG-ELHFRIGFEP 345 (370)
T ss_pred EEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCc-eEEEEEEEec
Confidence 3444445 8999999999999999999999998443222 2336666654
No 192
>PRK06291 aspartate kinase; Provisional
Probab=23.12 E-value=3.2e+02 Score=27.99 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=32.0
Q ss_pred eCCeeEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 020210 247 AESHANIKILTK---KRPRQLLKMVASFQNLRLSVLHLNVSTVD 287 (329)
Q Consensus 247 ~e~~~~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~anvSt~~ 287 (329)
.++-+.|.|.+. ..+|.+.+++++|.+.++.|.....++..
T Consensus 318 ~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse 361 (465)
T PRK06291 318 IKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE 361 (465)
T ss_pred eCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 345568888764 46899999999999999999887654433
No 193
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=23.06 E-value=4.7e+02 Score=29.99 Aligned_cols=64 Identities=6% Similarity=-0.019 Sum_probs=47.4
Q ss_pred cceEEEEEeC-Ce--eEEEEEe---CCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecCCC
Q 020210 239 VADIEVNMAE-SH--ANIKILT---KKRPRQLLKMVASFQNLRLSVLHLNVSTV-DQMVLYSVSVKVEEGS 302 (329)
Q Consensus 239 ~~~VeV~~~e-~~--~~IkI~c---~~rpg~L~~Il~aLe~lgL~Vv~anvSt~-~~~vl~s~~vKv~e~~ 302 (329)
.|.|+|.-++ ++ +.+-|-- ....+.++.|.+.+.-+||.+.++=+-++ ++..+++|.++...+.
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 4566666555 33 3333322 33467999999999999999999999887 8888999999976553
No 194
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=22.92 E-value=4.2e+02 Score=24.44 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHhC--CCeEEEEEEEeeCC-EEEEEEEEEecCCCccCCHHHHHHHHHHHHH
Q 020210 262 RQLLKMVASFQNL--RLSVLHLNVSTVDQ-MVLYSVSVKVEEGSQLNTVDEIAAAVHQILL 319 (329)
Q Consensus 262 g~L~~Il~aLe~l--gL~Vv~anvSt~~~-~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~ 319 (329)
....++.+.+++. ..+|.+.++...+. .....+++.++.+..+...+++.+++.+.+.
T Consensus 205 ~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~ 265 (284)
T PF01545_consen 205 ELVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLR 265 (284)
T ss_dssp HHHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 3456777777443 47999999999999 8888889998877643334455555555444
No 195
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=22.60 E-value=4.4e+02 Score=24.15 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhC-C-CeEEEEEEEeeCC-EEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 263 QLLKMVASFQNL-R-LSVLHLNVSTVDQ-MVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 263 ~L~~Il~aLe~l-g-L~Vv~anvSt~~~-~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
..-+|.+.+.+. + .+|.+..+...|. .++..+++.++++..+...++|...+.+-+
T Consensus 193 ~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i 251 (268)
T TIGR01297 193 DLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREI 251 (268)
T ss_pred cHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHH
Confidence 355666777654 3 4888888888887 888899999987754433455665555543
No 196
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.38 E-value=2.5e+02 Score=18.71 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=23.1
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEE
Q 020210 258 KKRPRQLLKMVASFQNLRLSVLHLNVS 284 (329)
Q Consensus 258 ~~rpg~L~~Il~aLe~lgL~Vv~anvS 284 (329)
+..++.+.++++.|.+.++.|...+.+
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 567899999999999999999776654
No 197
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.29 E-value=1.5e+02 Score=23.00 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020210 169 IGGSINFVKELEQLLQSMEAQKRNTS 194 (329)
Q Consensus 169 L~~AI~YIk~Lq~~v~~L~~~~~~~~ 194 (329)
+..||+-|.-||-.|++|+.+...+.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 67899999999999999998877553
No 198
>PRK06635 aspartate kinase; Reviewed
Probab=22.11 E-value=3.7e+02 Score=26.68 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=30.8
Q ss_pred EEEeCCeeEEEEEe---CCCCChHHHHHHHHHhCCCeEEEEE
Q 020210 244 VNMAESHANIKILT---KKRPRQLLKMVASFQNLRLSVLHLN 282 (329)
Q Consensus 244 V~~~e~~~~IkI~c---~~rpg~L~~Il~aLe~lgL~Vv~an 282 (329)
|+..++-+.|.|.+ ...||.+.+|+++|.+.++.|....
T Consensus 334 i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 334 VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 44445666788865 4578999999999999999998764
No 199
>smart00338 BRLZ basic region leucin zipper.
Probab=21.90 E-value=1.2e+02 Score=22.17 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 020210 174 NFVKELEQLLQSMEAQKRNTS 194 (329)
Q Consensus 174 ~YIk~Lq~~v~~L~~~~~~~~ 194 (329)
.||..|+.+++.|+.+...+.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~ 46 (65)
T smart00338 26 AEIEELERKVEQLEAENERLK 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666665543
No 200
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=21.74 E-value=1.2e+02 Score=22.13 Aligned_cols=19 Identities=21% Similarity=0.630 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 020210 174 NFVKELEQLLQSMEAQKRN 192 (329)
Q Consensus 174 ~YIk~Lq~~v~~L~~~~~~ 192 (329)
.||..|+.++..|+.+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~ 44 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEE 44 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4555555555555544443
No 201
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.54 E-value=81 Score=34.96 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 020210 175 FVKELEQLLQSMEAQKRNTS 194 (329)
Q Consensus 175 YIk~Lq~~v~~L~~~~~~~~ 194 (329)
.-+.|+.+++.|..++..+.
T Consensus 438 k~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666665543
No 202
>PRK07431 aspartate kinase; Provisional
Probab=21.44 E-value=3.5e+02 Score=28.55 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=44.6
Q ss_pred EEEEeCCeeEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 243 EVNMAESHANIKILTK---KRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 243 eV~~~e~~~~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
+++...+-+.|.|.+. ..+|++.+++.+|.+.++.|+... +.+ +.|++-+.+. ..+.+.++|++.+
T Consensus 341 ~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe----~~Is~vv~~~----d~~~av~~Lh~~f 409 (587)
T PRK07431 341 EVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSE----VKVSCVIDAE----DGDKALRAVCEAF 409 (587)
T ss_pred cEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCC----CEEEEEEcHH----HHHHHHHHHHHHh
Confidence 4555667778888885 578999999999999999997776 222 2333434322 2455556666555
No 203
>PRK11191 RNase E inhibitor protein; Provisional
Probab=21.15 E-value=2.8e+02 Score=24.10 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEE-eeCCEEEEEEEEEecCCCccCCHHHHHHHHHHH
Q 020210 260 RPRQLLKMVASFQNLRLSVLHLNVS-TVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQI 317 (329)
Q Consensus 260 rpg~L~~Il~aLe~lgL~Vv~anvS-t~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~i 317 (329)
....|-+++..+.++|..|..+.-. .-++..+|+|.+-.+.. + ..+.|.+.+.++
T Consensus 42 d~~~lek~a~~a~klGyeV~~~ee~e~edg~~~~~~~~~~e~~--l-~~e~I~~~~~~L 97 (138)
T PRK11191 42 DFDKLEKAAVEAFKLGYEVTDAEELELEDGDVIFCCDAVSEVA--L-NAELIDAQVEQL 97 (138)
T ss_pred CHHHHHHHHHHHHHcCCeeecccccccCCCCeEEEEEEEecCC--C-CHHHHHHHHHHH
Confidence 4557889999999999999766543 55677778777765533 2 345555544444
No 204
>PLN02551 aspartokinase
Probab=21.14 E-value=4.8e+02 Score=27.42 Aligned_cols=66 Identities=14% Similarity=0.243 Sum_probs=41.9
Q ss_pred EEeCCeeEEEEEeC--CCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 245 NMAESHANIKILTK--KRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 245 ~~~e~~~~IkI~c~--~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
.+..+-+.|.|... +.+|++.+++.+|.+.|+.|.-....+.+-. |++=|++. ..+...++||+.+
T Consensus 440 ~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSein----IS~vV~~~----d~~~Av~aLH~~F 507 (521)
T PLN02551 440 NLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVN----ISLIVNDD----EAEQCVRALHSAF 507 (521)
T ss_pred EEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcE----EEEEEeHH----HHHHHHHHHHHHH
Confidence 33345566776654 4789999999999999999987765554333 33333322 2455555666554
No 205
>PRK10738 hypothetical protein; Provisional
Probab=20.79 E-value=2.3e+02 Score=23.98 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCeEEEEEEEeeCC------EEEEEEEEEec-CCCccCCHHHHHHHHHHHHHH
Q 020210 265 LKMVASFQNLRLSVLHLNVSTVDQ------MVLYSVSVKVE-EGSQLNTVDEIAAAVHQILLE 320 (329)
Q Consensus 265 ~~Il~aLe~lgL~Vv~anvSt~~~------~vl~s~~vKv~-e~~~l~s~~eI~~aL~~il~r 320 (329)
..++..|+..++++-.+.|...+. .++..|++++. ++..+ +.+++.++|...+.+
T Consensus 50 i~v~~~l~k~~~~~~~~~v~v~~~r~~~~p~~f~~I~~~~~~~g~~l-~~e~~~rav~ls~~k 111 (134)
T PRK10738 50 IDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGKDL-KDAAVARAVDLSAEK 111 (134)
T ss_pred HHHHHHHHHCCCCcccEEEEEEEEEcccCCCcccEEEEEEEEECCCC-CHHHHHHHHHHHHcc
Confidence 567788899999998888876544 23445655554 23224 778888888766554
No 206
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=20.34 E-value=1.4e+02 Score=31.04 Aligned_cols=36 Identities=3% Similarity=0.164 Sum_probs=32.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD 287 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~ 287 (329)
-++|.|.+|-|+..+|++.|-..++++....|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 478999999999999999999999999999996664
No 207
>PF15392 Joubert: Joubert syndrome-associated
Probab=20.22 E-value=2.8e+02 Score=27.45 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=35.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCC---CCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 020210 129 QRMTHIAVERNRRKQMNEYLAILRSLMPP---SYVQRGDQASVIGGSINFVKELEQLLQSM 186 (329)
Q Consensus 129 ~r~~h~~~ER~RR~~mn~~~~~LrslvP~---~~~~k~dKasIL~~AI~YIk~Lq~~v~~L 186 (329)
++.-.....|+||++|-+++..|..+.-. ++..+.+-..+-..-|.-.++++.+-.+|
T Consensus 56 RrEIq~WMkRKrkERmaEYl~qlaEkR~qEH~PF~p~~~p~~~TSreIrl~QK~K~EKdRl 116 (329)
T PF15392_consen 56 RREIQAWMKRKRKERMAEYLKQLAEKREQEHKPFCPRSNPFYMTSREIRLRQKMKEEKDRL 116 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 35567899999999999999888665432 22344332223344455555554444443
Done!