Query 020210
Match_columns 329
No_of_seqs 210 out of 1182
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 3.3E-16 1.1E-20 122.5 8.5 68 127-195 4-71 (82)
2 1hlo_A Protein (transcription 99.6 1E-15 3.5E-20 119.0 7.9 71 125-195 8-78 (80)
3 1nkp_B MAX protein, MYC proto- 99.6 1.8E-15 6.2E-20 118.3 8.1 66 129-194 2-67 (83)
4 1nkp_A C-MYC, MYC proto-oncoge 99.6 4.7E-15 1.6E-19 117.4 8.7 69 125-193 2-71 (88)
5 4h10_B Circadian locomoter out 99.6 2.5E-15 8.7E-20 114.3 6.5 61 126-187 5-65 (71)
6 1an4_A Protein (upstream stimu 99.5 3.5E-15 1.2E-19 111.5 1.9 56 129-184 5-64 (65)
7 1nlw_A MAD protein, MAX dimeri 99.5 9.2E-14 3.2E-18 108.2 9.2 65 130-194 2-67 (80)
8 1a0a_A BHLH, protein (phosphat 99.5 1.5E-14 5.2E-19 107.7 3.3 56 129-184 2-62 (63)
9 4h10_A ARYL hydrocarbon recept 99.5 2.8E-14 9.7E-19 109.2 3.6 58 124-181 4-63 (73)
10 4ati_A MITF, microphthalmia-as 99.4 1.3E-13 4.3E-18 114.8 7.8 63 130-192 28-92 (118)
11 3u5v_A Protein MAX, transcript 99.4 3.8E-14 1.3E-18 109.3 3.1 61 127-187 3-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.4 9.7E-13 3.3E-17 99.4 6.4 59 126-184 9-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.3 7E-12 2.4E-16 92.4 6.5 57 128-184 1-58 (60)
14 4f3l_A Mclock, circadian locom 98.9 1.1E-09 3.7E-14 105.5 5.8 54 128-182 11-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 9.6E-09 3.3E-13 100.1 5.9 55 128-182 12-68 (387)
16 2lfh_A DNA-binding protein inh 98.7 4.8E-09 1.6E-13 78.7 1.8 48 134-181 19-67 (68)
17 4ath_A MITF, microphthalmia-as 98.4 7.8E-07 2.7E-11 69.2 7.1 52 141-192 4-57 (83)
18 4aya_A DNA-binding protein inh 98.2 2.1E-06 7E-11 68.7 6.8 48 137-184 33-81 (97)
19 1zpv_A ACT domain protein; str 97.6 0.0012 4.2E-08 50.3 12.2 69 250-321 5-73 (91)
20 1u8s_A Glycine cleavage system 96.7 0.0086 2.9E-07 52.1 10.2 67 250-320 6-72 (192)
21 2ko1_A CTR148A, GTP pyrophosph 96.5 0.007 2.4E-07 45.3 6.8 50 250-299 5-54 (88)
22 2nyi_A Unknown protein; protei 96.4 0.016 5.6E-07 50.8 9.7 68 250-321 93-166 (195)
23 2nyi_A Unknown protein; protei 96.2 0.018 6.1E-07 50.6 9.0 50 250-299 5-54 (195)
24 1u8s_A Glycine cleavage system 95.9 0.059 2E-06 46.7 10.8 70 250-322 93-170 (192)
25 3obi_A Formyltetrahydrofolate 94.0 0.27 9.3E-06 46.1 9.9 72 248-321 4-77 (288)
26 3o1l_A Formyltetrahydrofolate 93.9 0.53 1.8E-05 44.4 11.7 71 249-321 21-93 (302)
27 3n0v_A Formyltetrahydrofolate 93.8 0.31 1.1E-05 45.6 9.9 69 249-320 7-77 (286)
28 3p96_A Phosphoserine phosphata 93.6 0.27 9.1E-06 47.3 9.4 71 249-321 11-81 (415)
29 3lou_A Formyltetrahydrofolate 93.0 0.67 2.3E-05 43.5 10.8 72 249-321 9-83 (292)
30 2jhe_A Transcription regulator 92.5 0.32 1.1E-05 40.3 7.2 35 252-286 2-36 (190)
31 2f1f_A Acetolactate synthase i 92.0 0.22 7.4E-06 43.1 5.6 64 251-318 4-69 (164)
32 2fgc_A Acetolactate synthase, 91.1 0.38 1.3E-05 42.7 6.3 64 251-318 30-95 (193)
33 2pc6_A Probable acetolactate s 90.9 0.23 7.8E-06 43.0 4.6 64 251-318 5-70 (165)
34 3nrb_A Formyltetrahydrofolate 90.1 0.92 3.1E-05 42.4 8.4 67 249-319 6-74 (287)
35 1y7p_A Hypothetical protein AF 88.5 0.92 3.2E-05 41.1 6.8 61 250-316 4-69 (223)
36 2f06_A Conserved hypothetical 77.5 14 0.00047 29.8 9.1 57 252-316 74-130 (144)
37 2qmx_A Prephenate dehydratase; 67.4 20 0.00068 33.3 8.5 62 253-317 203-265 (283)
38 3luy_A Probable chorismate mut 66.9 54 0.0019 31.0 11.6 57 259-318 217-274 (329)
39 2qmw_A PDT, prephenate dehydra 62.5 25 0.00086 32.3 8.2 64 251-318 187-254 (267)
40 3mwb_A Prephenate dehydratase; 61.7 23 0.00079 33.3 7.9 64 252-318 203-268 (313)
41 2f06_A Conserved hypothetical 60.8 49 0.0017 26.4 8.9 35 252-286 8-42 (144)
42 2dt9_A Aspartokinase; protein- 55.1 47 0.0016 27.5 8.1 53 245-297 11-67 (167)
43 2re1_A Aspartokinase, alpha an 52.5 51 0.0017 27.3 7.9 44 244-289 97-143 (167)
44 2dtj_A Aspartokinase; protein- 50.0 51 0.0018 27.7 7.6 54 244-297 9-66 (178)
45 3byp_A CZRB protein; membrane 49.9 74 0.0025 23.4 8.1 57 263-319 11-71 (94)
46 2wt7_A Proto-oncogene protein 49.6 48 0.0017 23.5 6.2 42 137-193 1-42 (63)
47 2l5g_A GPS2 protein, G protein 49.2 33 0.0011 22.4 4.6 31 163-193 4-34 (38)
48 3he4_B Synzip5; heterodimeric 49.1 26 0.0009 23.0 4.2 25 169-193 5-29 (46)
49 2dtj_A Aspartokinase; protein- 47.8 79 0.0027 26.5 8.4 66 243-318 88-156 (178)
50 2re1_A Aspartokinase, alpha an 47.3 44 0.0015 27.8 6.6 40 244-283 19-59 (167)
51 2dt9_A Aspartokinase; protein- 44.2 71 0.0024 26.4 7.5 65 243-317 88-155 (167)
52 3s1t_A Aspartokinase; ACT doma 43.6 68 0.0023 27.2 7.4 66 243-318 89-157 (181)
53 3p96_A Phosphoserine phosphata 42.0 1.3E+02 0.0044 28.2 9.8 69 249-321 100-169 (415)
54 1rwu_A Hypothetical UPF0250 pr 41.9 43 0.0015 26.6 5.4 49 250-299 36-87 (109)
55 1zme_C Proline utilization tra 40.3 25 0.00084 24.7 3.4 22 174-195 44-65 (70)
56 3s1t_A Aspartokinase; ACT doma 39.8 1.4E+02 0.005 25.1 8.9 53 245-297 11-67 (181)
57 2er8_A Regulatory protein Leu3 39.2 20 0.00069 25.5 2.8 22 173-194 48-69 (72)
58 2zzt_A Putative uncharacterize 38.4 88 0.003 24.0 6.7 57 263-319 11-69 (107)
59 1phz_A Protein (phenylalanine 37.9 37 0.0012 33.5 5.2 63 252-318 36-99 (429)
60 2lqj_A Mg2+ transport protein; 35.6 59 0.002 25.0 5.1 36 250-285 8-45 (94)
61 2rrl_A FLIK, flagellar HOOK-le 34.2 87 0.003 26.9 6.4 48 239-286 100-153 (169)
62 1p3q_Q VPS9P, vacuolar protein 34.2 41 0.0014 23.6 3.6 23 135-157 3-25 (54)
63 2oqq_A Transcription factor HY 33.3 41 0.0014 22.4 3.2 21 174-194 3-23 (42)
64 1dh3_A Transcription factor CR 32.9 40 0.0014 23.5 3.4 21 174-194 22-42 (55)
65 1pd7_B MAD1; PAH2, SIN3, eukar 32.8 50 0.0017 19.8 3.2 20 163-182 2-21 (26)
66 1ygy_A PGDH, D-3-phosphoglycer 32.2 2E+02 0.0067 28.5 9.7 61 250-316 454-516 (529)
67 3h90_A Ferrous-iron efflux pum 30.1 1.9E+02 0.0063 25.9 8.4 57 263-319 207-265 (283)
68 3ab4_A Aspartokinase; aspartat 29.2 1.6E+02 0.0053 28.3 8.1 54 244-297 258-315 (421)
69 1gd2_E Transcription factor PA 29.1 46 0.0016 24.5 3.3 18 174-191 29-46 (70)
70 3ab4_A Aspartokinase; aspartat 28.8 1.7E+02 0.0057 28.1 8.2 65 244-318 338-405 (421)
71 3muj_A Transcription factor CO 27.9 74 0.0025 26.5 4.7 37 143-179 95-133 (138)
72 1pyi_A Protein (pyrimidine pat 27.3 79 0.0027 23.4 4.6 22 173-194 47-68 (96)
73 4go7_X Aspartokinase; transfer 27.3 2E+02 0.0069 24.9 7.8 54 244-297 29-86 (200)
74 2akf_A Coronin-1A; coiled coil 25.9 62 0.0021 20.0 2.8 14 176-189 15-28 (32)
75 1g70_B RSG-1.2 peptide; peptid 23.0 48 0.0016 19.4 1.9 10 134-143 10-19 (26)
76 2jee_A YIIU; FTSZ, septum, coi 21.6 1.1E+02 0.0038 23.2 4.2 25 169-193 15-39 (81)
77 2dnr_A Synaptojanin-1; RRM dom 21.4 1.4E+02 0.0047 23.0 4.9 38 249-287 8-51 (91)
78 1gmj_A ATPase inhibitor; coile 20.3 2.3E+02 0.0077 21.6 5.7 45 141-195 35-79 (84)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.65 E-value=3.3e-16 Score=122.50 Aligned_cols=68 Identities=18% Similarity=0.347 Sum_probs=62.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020210 127 ENQRMTHIAVERNRRKQMNEYLAILRSLMPPSYVQRGDQASVIGGSINFVKELEQLLQSMEAQKRNTSQ 195 (329)
Q Consensus 127 ~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~~~ 195 (329)
..+|.+|+.+||+||++||++|..|++|||.. ..|+||++||.+||+||++|+.+++.|+.+...+..
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999983 479999999999999999999999999999887653
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.61 E-value=1e-15 Score=119.00 Aligned_cols=71 Identities=15% Similarity=0.334 Sum_probs=64.3
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020210 125 EIENQRMTHIAVERNRRKQMNEYLAILRSLMPPSYVQRGDQASVIGGSINFVKELEQLLQSMEAQKRNTSQ 195 (329)
Q Consensus 125 ~~~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~~~ 195 (329)
+...+|.+|+.+||+||..||+.|..|+++||.....|.+|++||..||+||+.|+++++.|+.+++.+..
T Consensus 8 ~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 8 SDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34568999999999999999999999999999844468999999999999999999999999999987653
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.60 E-value=1.8e-15 Score=118.28 Aligned_cols=66 Identities=17% Similarity=0.358 Sum_probs=60.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020210 129 QRMTHIAVERNRRKQMNEYLAILRSLMPPSYVQRGDQASVIGGSINFVKELEQLLQSMEAQKRNTS 194 (329)
Q Consensus 129 ~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~~ 194 (329)
+|.+|+.+||+||..||+.|..|+++||.....|.+|++||..||+||+.|+++++.|+.+++.+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999984457899999999999999999999999998887764
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=4.7e-15 Score=117.44 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=60.6
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020210 125 EIENQRMTHIAVERNRRKQMNEYLAILRSLMPPS-YVQRGDQASVIGGSINFVKELEQLLQSMEAQKRNT 193 (329)
Q Consensus 125 ~~~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~-~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~ 193 (329)
++..+|.+|+..||+||..||++|..|+++||.. ...|.+|++||.+||+||++|+.+.+.|..+++.+
T Consensus 2 ed~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 2 HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999983 13589999999999999999999999988776654
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.57 E-value=2.5e-15 Score=114.32 Aligned_cols=61 Identities=25% Similarity=0.458 Sum_probs=55.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 020210 126 IENQRMTHIAVERNRRKQMNEYLAILRSLMPPSYVQRGDQASVIGGSINFVKELEQLLQSME 187 (329)
Q Consensus 126 ~~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~ 187 (329)
...+|.+|+.+||+||++||++|..|++|||.. ..|+||++||..||+||+.||+++.-|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~-~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC-CSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 356789999999999999999999999999973 4699999999999999999999988775
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=3.5e-15 Score=111.48 Aligned_cols=56 Identities=25% Similarity=0.517 Sum_probs=49.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCC----CCCchhhhHHHHHHHHHHHHHHHH
Q 020210 129 QRMTHIAVERNRRKQMNEYLAILRSLMPPSYV----QRGDQASVIGGSINFVKELEQLLQ 184 (329)
Q Consensus 129 ~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~~----~k~dKasIL~~AI~YIk~Lq~~v~ 184 (329)
+|.+|+.+||+||++||+.|..|++|||.... .|++|++||..||+||++|+++.+
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999998533 278999999999999999998653
No 7
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.49 E-value=9.2e-14 Score=108.16 Aligned_cols=65 Identities=26% Similarity=0.292 Sum_probs=58.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020210 130 RMTHIAVERNRRKQMNEYLAILRSLMPPS-YVQRGDQASVIGGSINFVKELEQLLQSMEAQKRNTS 194 (329)
Q Consensus 130 r~~h~~~ER~RR~~mn~~~~~LrslvP~~-~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~~ 194 (329)
|.+|+..||+||..||++|..|+++||.. -..|.+|++||..|++||+.|+++.+.|..+++.+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999962 246788999999999999999999999998887664
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.47 E-value=1.5e-14 Score=107.72 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=49.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC-----CCCCchhhhHHHHHHHHHHHHHHHH
Q 020210 129 QRMTHIAVERNRRKQMNEYLAILRSLMPPSY-----VQRGDQASVIGGSINFVKELEQLLQ 184 (329)
Q Consensus 129 ~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~-----~~k~dKasIL~~AI~YIk~Lq~~v~ 184 (329)
+|.+|+.+||+||++||..|..|++|||..+ ..+.+|++||+.||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 3679999999999999999999999999631 2467899999999999999998653
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=2.8e-14 Score=109.22 Aligned_cols=58 Identities=29% Similarity=0.504 Sum_probs=50.4
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCchhhhHHHHHHHHHHHHH
Q 020210 124 EEIENQRMTHIAVERNRRKQMNEYLAILRSLMPPSY--VQRGDQASVIGGSINFVKELEQ 181 (329)
Q Consensus 124 e~~~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~--~~k~dKasIL~~AI~YIk~Lq~ 181 (329)
+....+|..|+.+||+||++||+.|..|++|||.+. ..|+||++||..||+||+.|+.
T Consensus 4 ~k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 4 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 344567889999999999999999999999999731 3689999999999999999873
No 10
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.45 E-value=1.3e-13 Score=114.83 Aligned_cols=63 Identities=22% Similarity=0.422 Sum_probs=52.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020210 130 RMTHIAVERNRRKQMNEYLAILRSLMPPSY--VQRGDQASVIGGSINFVKELEQLLQSMEAQKRN 192 (329)
Q Consensus 130 r~~h~~~ER~RR~~mn~~~~~LrslvP~~~--~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~ 192 (329)
+.+|+.+||+||++||++|..|++|||... ..|.+|++||..||+||++|+++++.|+.....
T Consensus 28 r~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 28 KDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999842 236789999999999999999999999875443
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.43 E-value=3.8e-14 Score=109.34 Aligned_cols=61 Identities=21% Similarity=0.346 Sum_probs=48.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCC-CCCCCC-chhhhHHHHHHHHHHHHHHHHHHH
Q 020210 127 ENQRMTHIAVERNRRKQMNEYLAILRSLMPP-SYVQRG-DQASVIGGSINFVKELEQLLQSME 187 (329)
Q Consensus 127 ~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~-~~~~k~-dKasIL~~AI~YIk~Lq~~v~~L~ 187 (329)
..+|..|+.+||+||..||+.|..||.+||. ....|. .|++||..||+||+.|++++++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999994 223455 688999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.35 E-value=9.7e-13 Score=99.35 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=52.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHH
Q 020210 126 IENQRMTHIAVERNRRKQMNEYLAILRSLMPPSYVQRGDQASVIGGSINFVKELEQLLQ 184 (329)
Q Consensus 126 ~~~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~ 184 (329)
...+|..|+..||+|+..||+.|..||.+||.....|.+|+.||..||+||..|++.++
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34578999999999999999999999999997545788999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.26 E-value=7e-12 Score=92.43 Aligned_cols=57 Identities=28% Similarity=0.367 Sum_probs=50.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCchhhhHHHHHHHHHHHHHHHH
Q 020210 128 NQRMTHIAVERNRRKQMNEYLAILRSLMPPS-YVQRGDQASVIGGSINFVKELEQLLQ 184 (329)
Q Consensus 128 ~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~-~~~k~dKasIL~~AI~YIk~Lq~~v~ 184 (329)
++|..|+..||+|+..||+.|..||.+||.. ...|.+|+.||..||+||..|++.++
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999973 24588999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.89 E-value=1.1e-09 Score=105.54 Aligned_cols=54 Identities=26% Similarity=0.498 Sum_probs=42.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHHHHHHHHHHH
Q 020210 128 NQRMTHIAVERNRRKQMNEYLAILRSLMPPSYVQRGDQASVIGGSINFVKELEQL 182 (329)
Q Consensus 128 ~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~ 182 (329)
.+|.+|+.+||+||++||+.|..|++|||.. ..|+||++||..||.||+.|+..
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~-~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCC-CCCcCHHHHHHHHHHHHHHHHhh
Confidence 4467899999999999999999999999942 67999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.72 E-value=9.6e-09 Score=100.11 Aligned_cols=55 Identities=29% Similarity=0.502 Sum_probs=48.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCchhhhHHHHHHHHHHHHHH
Q 020210 128 NQRMTHIAVERNRRKQMNEYLAILRSLMPPS--YVQRGDQASVIGGSINFVKELEQL 182 (329)
Q Consensus 128 ~~r~~h~~~ER~RR~~mn~~~~~LrslvP~~--~~~k~dKasIL~~AI~YIk~Lq~~ 182 (329)
..|.+|+.+||+||++||+.|..|++|||.. ...|+||++||..||.|||.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3467999999999999999999999999931 157999999999999999999843
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.68 E-value=4.8e-09 Score=78.69 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCchhhhHHHHHHHHHHHHH
Q 020210 134 IAVERNRRKQMNEYLAILRSLMPPS-YVQRGDQASVIGGSINFVKELEQ 181 (329)
Q Consensus 134 ~~~ER~RR~~mn~~~~~LrslvP~~-~~~k~dKasIL~~AI~YIk~Lq~ 181 (329)
+..||+|+..||+.|..||.+||.. ...|.+|..||.-||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3468999999999999999999972 23578999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.37 E-value=7.8e-07 Score=69.19 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCCC--CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020210 141 RKQMNEYLAILRSLMPPS--YVQRGDQASVIGGSINFVKELEQLLQSMEAQKRN 192 (329)
Q Consensus 141 R~~mn~~~~~LrslvP~~--~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~ 192 (329)
|..||++|..|..|||.+ ...|..|.+||..|++||++||+.++.+.+....
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999973 2346789999999999999999998888765543
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.24 E-value=2.1e-06 Score=68.74 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC-CCCCCchhhhHHHHHHHHHHHHHHHH
Q 020210 137 ERNRRKQMNEYLAILRSLMPPS-YVQRGDQASVIGGSINFVKELEQLLQ 184 (329)
Q Consensus 137 ER~RR~~mn~~~~~LrslvP~~-~~~k~dKasIL~~AI~YIk~Lq~~v~ 184 (329)
||.|-..||+.|..||.+||.. ..+|..|..+|.-||+||..|++.++
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 5788899999999999999972 24688999999999999999998874
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.59 E-value=0.0012 Score=50.30 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=58.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
.+.|.|.|+++||+|.+|...|-++|..|++++....++.+...+.+.+.+.. ..++|.++|.++-..+
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~---~l~~l~~~L~~~~~~~ 73 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ---DFTYLRNEFEAFGQTL 73 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC---CHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCC---CHHHHHHHHHHHHHHc
Confidence 46799999999999999999999999999999998888877777777776532 5799999998876654
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.74 E-value=0.0086 Score=52.13 Aligned_cols=67 Identities=7% Similarity=0.107 Sum_probs=54.8
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHH
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLE 320 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r 320 (329)
.+.|.|.|+++||++.+|...|.++|+.|+.+++.+..+.+...+.+.... . ..+.|+++|.++..+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~---~-~~~~l~~~L~~~~~~ 72 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP---S-NITRVETTLPLLGQQ 72 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH---H-HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC---C-CHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999998888766666666432 1 467888888777644
No 21
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.48 E-value=0.007 Score=45.35 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=41.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVE 299 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~ 299 (329)
.+.|+|.+.++||+|.+|...|.+.|+.|.++++...++.+...|.+.+.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC
Confidence 35788999999999999999999999999999998876654455666654
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.39 E-value=0.016 Score=50.84 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=54.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC------CEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD------QMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~------~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
.+.|.|.|+.+||++..|-..|-++|+.|+.+...+.+ ++++..+.+.+.++ . . ++|+++|..+..++
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~--~-~-~~l~~~l~~~a~~l 166 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFP--L-Y-QEVVTALSRVEEEF 166 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGG--G-H-HHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCC--c-c-HHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999876 55555555554432 2 5 78888888776655
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.23 E-value=0.018 Score=50.62 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=43.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVE 299 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~ 299 (329)
.+.|.|.|+.+||++..|...|.++|+.|+.+++.+..+.+...+.+...
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 47899999999999999999999999999999999887765556666544
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.94 E-value=0.059 Score=46.74 Aligned_cols=70 Identities=10% Similarity=0.232 Sum_probs=54.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--------CEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD--------QMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~--------~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
...|.|.|+.+||++..|...|-++|++|..+...+.+ +.++..+.+.+.++ .+.++|+++|..+..++
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~---~~~~~l~~~l~~~~~~~ 169 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSG---CNLMQLQEEFDALCTAL 169 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTT---SCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCC---CCHHHHHHHHHHHHHHh
Confidence 45889999999999999999999999999999998765 24444444444332 26899999999887765
Q ss_pred H
Q 020210 322 E 322 (329)
Q Consensus 322 ~ 322 (329)
.
T Consensus 170 ~ 170 (192)
T 1u8s_A 170 D 170 (192)
T ss_dssp T
T ss_pred C
Confidence 3
No 25
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=93.97 E-value=0.27 Score=46.06 Aligned_cols=72 Identities=6% Similarity=0.012 Sum_probs=55.9
Q ss_pred CCeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 248 ESHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVST--VDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 248 e~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt--~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
...+.|.|.|+++||++..|-..|-++|+.|+.++..+ .++.++-.+.+.+++.. .+.+++.++|..+-.++
T Consensus 4 ~~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~--~~~~~L~~~f~~la~~~ 77 (288)
T 3obi_A 4 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV--IPLASLRTGFGVIAAKF 77 (288)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC--CCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC--CCHHHHHHHHHHHHHHc
Confidence 34578999999999999999999999999999999864 36665555555555431 36899999988775543
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=93.85 E-value=0.53 Score=44.43 Aligned_cols=71 Identities=10% Similarity=0.019 Sum_probs=55.1
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
..+.|.|.|+++||++..|-..|-++|+.|+.++-+.. ++.++--+.+.+++. ..+.++|.++|..+-.++
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~--~~~~~~L~~~l~~la~~l 93 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL--PFDLDGFREAFTPIAEEF 93 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS--SSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC--CCCHHHHHHHHHHHHHHh
Confidence 34789999999999999999999999999999998875 566544444444332 236899999998776654
No 27
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=93.77 E-value=0.31 Score=45.64 Aligned_cols=69 Identities=6% Similarity=-0.107 Sum_probs=53.5
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVST--VDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLE 320 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt--~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r 320 (329)
..+.|.|.|+++||++..|-..|-++|+.|+.++-++ ..+.++-.+.+.+++ . .+.+++.+++..+-.+
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~-~~~~~L~~~f~~la~~ 77 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--D-FDEAGFRAGLAERSEA 77 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--S-CCHHHHHHHHHHHHGG
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--C-CCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999884 356654444444433 2 3689999988776443
No 28
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=93.59 E-value=0.27 Score=47.30 Aligned_cols=71 Identities=8% Similarity=0.108 Sum_probs=55.9
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
..++|.|.|+.|||++..|...|-++|..|+.++-+..++.++-.+.+.+++.. .+.++|.++|..+-.++
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~ 81 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV--ADGPALRHDVEAAIRKV 81 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH--HTSHHHHHHHHHHHHHT
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc--CCHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999999999999999986666666654321 13478888887665443
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=92.99 E-value=0.67 Score=43.48 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=53.7
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEecC-CCccCCHHHHHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVST--VDQMVLYSVSVKVEE-GSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt--~~~~vl~s~~vKv~e-~~~l~s~~eI~~aL~~il~r~ 321 (329)
..+.|.|.|+++||++..|-..|-++|+.|+.++-++ ..+.++--+.+.... +.. .+.+++.+++..+-.++
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~-~~~~~L~~~f~~la~~~ 83 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADA-LRVDALRREFEPIAERF 83 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC-----CCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccC-CCHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999884 356654444444430 112 36899999988776554
No 30
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=92.51 E-value=0.32 Score=40.33 Aligned_cols=35 Identities=3% Similarity=0.160 Sum_probs=32.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV 286 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~ 286 (329)
.|+|.|.+|+|+|.+|+++|.+.++++..+++.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 58899999999999999999999999999999766
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=92.01 E-value=0.22 Score=43.06 Aligned_cols=64 Identities=13% Similarity=0.311 Sum_probs=48.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD--QMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~--~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
..|.|...++||+|.+|...|...|+.|.++++.... +....+|.+. . ... .++.|...|+++.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~-d~~-~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--G-DEK-VLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--S-CHH-HHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--c-cHH-HHHHHHHHHcCCC
Confidence 3678889999999999999999999999999997553 5555566665 2 212 3577777777653
No 32
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=91.13 E-value=0.38 Score=42.73 Aligned_cols=64 Identities=14% Similarity=0.285 Sum_probs=49.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
-.|.|...++||.|.+|...|...|+.|.+.++... .+....+|.+.-.+ . .++.|...|++++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e---~-~ieqL~kQL~KLi 95 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD---K-TIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT---T-HHHHHHHHHTTST
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH---H-HHHHHHHHhcCcC
Confidence 467888899999999999999999999999999754 35555666665332 2 4788888888764
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=90.95 E-value=0.23 Score=43.03 Aligned_cols=64 Identities=13% Similarity=0.264 Sum_probs=48.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 251 ANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD--QMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 251 ~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~--~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
-.|.|...++||.|.+|...|...|+.|.++++.... +....+|.+. .+ .. .++.|...|++++
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~d--~~-~leql~kQL~Kl~ 70 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-GP--DE-IVEQITKQLNKLI 70 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-EC--HH-HHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-cc--HH-HHHHHHHHhcCCC
Confidence 3678888999999999999999999999999997543 5666666665 22 12 3677777777664
No 34
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=90.15 E-value=0.92 Score=42.39 Aligned_cols=67 Identities=10% Similarity=0.149 Sum_probs=47.4
Q ss_pred CeeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHH
Q 020210 249 SHANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVST--VDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILL 319 (329)
Q Consensus 249 ~~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt--~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~ 319 (329)
..+.|.|.|+++||++..|-..|-++|+.|+.++..+ .++.++-.+.+..+. .+.+++.++|..+-.
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~----~~~~~L~~~f~~la~ 74 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV----AGVNDFNSAFGKVVE 74 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC-------CHHHHHHHHHHG
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC----CCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999864 356544333333322 134567766665533
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=88.53 E-value=0.92 Score=41.09 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=43.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-----CEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVD-----QMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~-----~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
.+.|.|.+.+|+|+|.+|+..|-+.+..|.+.+..... +....+ +++.+. ..++|.+.|.+
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~----~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG----DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS----CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC----CHHHHHHHHhC
Confidence 35788999999999999999999999999999998853 453333 776643 35777666654
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=77.49 E-value=14 Score=29.85 Aligned_cols=57 Identities=9% Similarity=0.108 Sum_probs=39.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
.|-+..+.+||.+.+|+++|.+.|+.|...-.+..+......| +++ ..+...++|++
T Consensus 74 vv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i--~~~------d~~~A~~~L~~ 130 (144)
T 2f06_A 74 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI--RPS------NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE--EES------CHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE--EeC------CHHHHHHHHHH
Confidence 3555667999999999999999999997655543445543333 332 35666666665
No 37
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=67.36 E-value=20 Score=33.27 Aligned_cols=62 Identities=10% Similarity=0.147 Sum_probs=46.2
Q ss_pred EEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEecCCCccCCHHHHHHHHHHH
Q 020210 253 IKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQ-MVLYSVSVKVEEGSQLNTVDEIAAAVHQI 317 (329)
Q Consensus 253 IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~-~vl~s~~vKv~e~~~l~s~~eI~~aL~~i 317 (329)
|-+..+++||.|.++|..|...|+.......-...+ .--|.|.+.++... .-..++++|.++
T Consensus 203 l~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~---~d~~v~~aL~~L 265 (283)
T 2qmx_A 203 IVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHR---EDQNVHNALENL 265 (283)
T ss_dssp EEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCT---TSHHHHHHHHHH
T ss_pred EEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCC---CcHHHHHHHHHH
Confidence 334446899999999999999999999999887644 34588888887442 225566666654
No 38
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=66.92 E-value=54 Score=30.99 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=45.0
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 259 KRPRQLLKMVASFQNLRLSVLHLNVSTVDQM-VLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 259 ~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~-vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
++||.|.++|..|...|+.......-...+. --|.|.+.++..- .-..++.||.++-
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~---~d~~v~~AL~~L~ 274 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAP---WEERFRDALVEIA 274 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCT---TSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCc---CCHHHHHHHHHHH
Confidence 5899999999999999999999999887654 4589999886542 2356777776653
No 39
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=62.55 E-value=25 Score=32.30 Aligned_cols=64 Identities=11% Similarity=0.311 Sum_probs=47.8
Q ss_pred eEEEEEe---CCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 251 ANIKILT---KKRPRQLLKMVASFQNLRLSVLHLNVSTVDQ-MVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 251 ~~IkI~c---~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~-~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
..|-+.. +++||.|.++|..|...|+.......-...+ .--|.|.+.++ .- .-..++++|.++-
T Consensus 187 tsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~---~d~~v~~aL~~L~ 254 (267)
T 2qmw_A 187 TSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SA---ITTDIKKVIAILE 254 (267)
T ss_dssp SEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CC---SCHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cC---CcHHHHHHHHHHH
Confidence 3444555 7899999999999999999999999887644 34488888887 42 2356667766653
No 40
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=61.69 E-value=23 Score=33.32 Aligned_cols=64 Identities=14% Similarity=0.260 Sum_probs=47.0
Q ss_pred EEEEEeC-CCCChHHHHHHHHHhCCCeEEEEEEEeeCCE-EEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 252 NIKILTK-KRPRQLLKMVASFQNLRLSVLHLNVSTVDQM-VLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 252 ~IkI~c~-~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~-vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
.|-+..+ ++||.|.++|..|...|+.......-...+. --|.|.+.++..- .-..+++||.++-
T Consensus 203 Sl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~---~d~~v~~aL~~L~ 268 (313)
T 3mwb_A 203 TVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHA---TDSRVADALAGLH 268 (313)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCT---TSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCC---CcHHHHHHHHHHH
Confidence 4444554 7999999999999999999999998776443 3488888887432 2355677766653
No 41
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=60.81 E-value=49 Score=26.42 Aligned_cols=35 Identities=9% Similarity=0.242 Sum_probs=29.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV 286 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~ 286 (329)
.|.|..+++||.|.+|...|.+.|+.|....+...
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~ 42 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN 42 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEec
Confidence 46667789999999999999999999988776544
No 42
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=55.06 E-value=47 Score=27.51 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=36.3
Q ss_pred EEeCCeeEEEEEe-CCCCChHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEE
Q 020210 245 NMAESHANIKILT-KKRPRQLLKMVASFQNLRLSVLHLNVSTV---DQMVLYSVSVK 297 (329)
Q Consensus 245 ~~~e~~~~IkI~c-~~rpg~L~~Il~aLe~lgL~Vv~anvSt~---~~~vl~s~~vK 297 (329)
....+-+.|.|.. +.+||.+.+|+.+|.+.++.|.....+.. .+..-.+|.+.
T Consensus 11 a~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 11 ALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 3445666777765 67899999999999999988876554322 23444555554
No 43
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=52.48 E-value=51 Score=27.35 Aligned_cols=44 Identities=5% Similarity=0.100 Sum_probs=34.1
Q ss_pred EEEeCCeeEEEEEeCC---CCChHHHHHHHHHhCCCeEEEEEEEeeCCE
Q 020210 244 VNMAESHANIKILTKK---RPRQLLKMVASFQNLRLSVLHLNVSTVDQM 289 (329)
Q Consensus 244 V~~~e~~~~IkI~c~~---rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~ 289 (329)
|...++-+.|.|.... +||.+.+++++|.+.|+.|.... +....
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~ 143 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIK 143 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSE
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCE
Confidence 4444566788888865 89999999999999999998854 44444
No 44
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=50.01 E-value=51 Score=27.72 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=36.1
Q ss_pred EEEeCCeeEEEEE-eCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEE
Q 020210 244 VNMAESHANIKIL-TKKRPRQLLKMVASFQNLRLSVLHLNVSTV---DQMVLYSVSVK 297 (329)
Q Consensus 244 V~~~e~~~~IkI~-c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~---~~~vl~s~~vK 297 (329)
|....+-+.|.|. ...+||.+.+|+..|.+.++.|.....++. ++..-++|.+.
T Consensus 9 Ia~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~ 66 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCP 66 (178)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEE
T ss_pred EEecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEc
Confidence 3444566778774 478899999999999999976665544433 22333445554
No 45
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=49.94 E-value=74 Score=23.40 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhC----CCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHH
Q 020210 263 QLLKMVASFQNL----RLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILL 319 (329)
Q Consensus 263 ~L~~Il~aLe~l----gL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~ 319 (329)
.+.+|.+.|.+. -.+|.++.+-..|...+.++++.++++-.+...++|...+.+.|.
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~ 71 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALA 71 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHH
Confidence 455666666654 468999999888888888999998755322233555555555543
No 46
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.63 E-value=48 Score=23.52 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020210 137 ERNRRKQMNEYLAILRSLMPPSYVQRGDQASVIGGSINFVKELEQLLQSMEAQKRNT 193 (329)
Q Consensus 137 ER~RR~~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~ 193 (329)
||++|....++.++.++ +.. -..||..|+.+++.|+.+...+
T Consensus 1 Ekr~rrrerNR~AA~rc--------R~r-------Kk~~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC--------RNR-------RRELTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp CHHHHHHHHHHHHHHHH--------HHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH--------HHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777776664 111 2356666666666666555444
No 47
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.16 E-value=33 Score=22.36 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=26.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020210 163 GDQASVIGGSINFVKELEQLLQSMEAQKRNT 193 (329)
Q Consensus 163 ~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~ 193 (329)
+.....|+++-+-|..|+.+++.|+.++..+
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999988754
No 48
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=49.14 E-value=26 Score=23.05 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 020210 169 IGGSINFVKELEQLLQSMEAQKRNT 193 (329)
Q Consensus 169 L~~AI~YIk~Lq~~v~~L~~~~~~~ 193 (329)
+.+--+||++|+++..+|+.-++-+
T Consensus 5 vkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 5566799999999999888766544
No 49
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=47.79 E-value=79 Score=26.52 Aligned_cols=66 Identities=15% Similarity=0.328 Sum_probs=43.6
Q ss_pred EEEEeCCeeEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 243 EVNMAESHANIKILTK---KRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 243 eV~~~e~~~~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
.|...++-+.|.|... ..||.+.+++.+|.+.++.|.-.+ +..-.+ +|.+ ++. ..+...++|++.+
T Consensus 88 ~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~I--s~vV--~~~----d~~~Av~~Lh~~F 156 (178)
T 2dtj_A 88 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRI--SVLI--RED----DLDAAARALHEQF 156 (178)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEE--EGG----GHHHHHHHHHHHH
T ss_pred eEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeE--EEEE--eHH----HHHHHHHHHHHHH
Confidence 3455567778888875 578999999999999999998754 334332 2333 221 2455666666544
No 50
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=47.35 E-value=44 Score=27.76 Aligned_cols=40 Identities=10% Similarity=0.256 Sum_probs=31.9
Q ss_pred EEEeCCeeEEEEE-eCCCCChHHHHHHHHHhCCCeEEEEEE
Q 020210 244 VNMAESHANIKIL-TKKRPRQLLKMVASFQNLRLSVLHLNV 283 (329)
Q Consensus 244 V~~~e~~~~IkI~-c~~rpg~L~~Il~aLe~lgL~Vv~anv 283 (329)
|....+.+.|.|. .+.+||.+.+|+..|.+.|+.|.....
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~ 59 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQ 59 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEE
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEc
Confidence 3444566788887 478999999999999999998877654
No 51
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=44.25 E-value=71 Score=26.36 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=43.2
Q ss_pred EEEEeCCeeEEEEEeCC---CCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHH
Q 020210 243 EVNMAESHANIKILTKK---RPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQI 317 (329)
Q Consensus 243 eV~~~e~~~~IkI~c~~---rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~i 317 (329)
.|.+.++-+.|.|.... +||.+.+++++|.+.|+.|.-.+ +..-. .++.++ +. ..++..++|++.
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~--is~vv~--~~----d~~~Av~~Lh~~ 155 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEVR--ISVIIP--AE----YAEAALRAVHQA 155 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSSE--EEEEEE--GG----GHHHHHHHHHHH
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCCE--EEEEEe--HH----HHHHHHHHHHHH
Confidence 55556677788888864 89999999999999999995543 33333 233333 22 245556666654
No 52
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=43.62 E-value=68 Score=27.22 Aligned_cols=66 Identities=11% Similarity=0.254 Sum_probs=44.5
Q ss_pred EEEEeCCeeEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 243 EVNMAESHANIKILTK---KRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 243 eV~~~e~~~~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
+|...++-+.|.|... ..||++.+++++|.+.++.|.-.+ +.+-. .++.++ +. ..+...++|++.+
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~--Is~vV~--~~----d~~~Av~aLH~~f 157 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIR--ISVLCR--DT----ELDKAVVALHEAF 157 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTE--EEEEEE--GG----GHHHHHHHHHHHH
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCCE--EEEEEe--HH----HHHHHHHHHHHHH
Confidence 3455567778887764 689999999999999999988877 33333 233333 22 2466666776654
No 53
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=41.97 E-value=1.3e+02 Score=28.24 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=52.2
Q ss_pred CeeEEEEEeCC-CCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHHHH
Q 020210 249 SHANIKILTKK-RPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILLEI 321 (329)
Q Consensus 249 ~~~~IkI~c~~-rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~r~ 321 (329)
.+..+.+..+. +++++.+|...|.++++.+..+...+....+.+-|++.+... +..++.++|.++....
T Consensus 100 ~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~----~~~~l~~~l~~l~~~~ 169 (415)
T 3p96_A 100 STHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPG----ADEALRTALNRVSSEE 169 (415)
T ss_dssp CSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTT----CHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCC----CHHHHHHHHHHHhhhc
Confidence 45667777777 899999999999999999988887775444445566666542 5788888888876654
No 54
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=41.87 E-value=43 Score=26.65 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=37.2
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhC---CCeEEEEEEEeeCCEEEEEEEEEec
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNL---RLSVLHLNVSTVDQMVLYSVSVKVE 299 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~l---gL~Vv~anvSt~~~~vl~s~~vKv~ 299 (329)
.+.+||.....+.+...|+.+++.+ ..++ ..+-|..|..+-.++.+.|.
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~ 87 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT 87 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC
Confidence 4678888888999999999999987 6776 55767677775566665554
No 55
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=40.34 E-value=25 Score=24.73 Aligned_cols=22 Identities=9% Similarity=0.297 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 020210 174 NFVKELEQLLQSMEAQKRNTSQ 195 (329)
Q Consensus 174 ~YIk~Lq~~v~~L~~~~~~~~~ 195 (329)
.||..|+++++.|+..+..+..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999988877654
No 56
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=39.77 E-value=1.4e+02 Score=25.10 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=36.0
Q ss_pred EEeCCeeEEEEEe-CCCCChHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEE
Q 020210 245 NMAESHANIKILT-KKRPRQLLKMVASFQNLRLSVLHLNVSTV---DQMVLYSVSVK 297 (329)
Q Consensus 245 ~~~e~~~~IkI~c-~~rpg~L~~Il~aLe~lgL~Vv~anvSt~---~~~vl~s~~vK 297 (329)
....+.+.|.|.. +.+||.+.+|+..|.+.++.|....-+.. ++..-.+|.+.
T Consensus 11 a~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 11 AHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp EEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred EecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 3345566666653 57899999999999999998876653222 44544556554
No 57
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=39.24 E-value=20 Score=25.46 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 020210 173 INFVKELEQLLQSMEAQKRNTS 194 (329)
Q Consensus 173 I~YIk~Lq~~v~~L~~~~~~~~ 194 (329)
-.||..|+++|+.|+..+..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999887653
No 58
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=38.37 E-value=88 Score=24.01 Aligned_cols=57 Identities=9% Similarity=0.214 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhCC--CeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHH
Q 020210 263 QLLKMVASFQNLR--LSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILL 319 (329)
Q Consensus 263 ~L~~Il~aLe~lg--L~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~ 319 (329)
.+-+|...|.+.. .+|.++.+-..|..++.++++.|.+.-.+....+|...|.+.|.
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~ 69 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEML 69 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 4566777777663 57888888888888888999998755322223456666655553
No 59
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=37.86 E-value=37 Score=33.50 Aligned_cols=63 Identities=11% Similarity=0.148 Sum_probs=45.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 252 NIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTVDQ-MVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 252 ~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~-~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
.|-+..+++||.|.++|..|...|+.+.+...-...+ .--|.|.+.++ . . .-..++++|.++-
T Consensus 36 SLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e-h--~-~d~~v~~AL~eL~ 99 (429)
T 1phz_A 36 SLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD-K--R-TKPVLGSIIKSLR 99 (429)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC-G--G-GHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe-e--C-CCHHHHHHHHHHH
Confidence 3444457889999999999999999999999877643 34588888877 3 2 2344666666553
No 60
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=35.61 E-value=59 Score=24.98 Aligned_cols=36 Identities=3% Similarity=0.137 Sum_probs=29.4
Q ss_pred eeEEEEEeCCC--CChHHHHHHHHHhCCCeEEEEEEEe
Q 020210 250 HANIKILTKKR--PRQLLKMVASFQNLRLSVLHLNVST 285 (329)
Q Consensus 250 ~~~IkI~c~~r--pg~L~~Il~aLe~lgL~Vv~anvSt 285 (329)
...|.|.|.+. ..+...|++.|+..++.+..+.+..
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~ 45 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGP 45 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeec
Confidence 35899999874 4577888999999999999999655
No 61
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=34.17 E-value=87 Score=26.90 Aligned_cols=48 Identities=8% Similarity=0.221 Sum_probs=39.7
Q ss_pred cceEEEEEeCCeeEEEEEeCCC------CChHHHHHHHHHhCCCeEEEEEEEee
Q 020210 239 VADIEVNMAESHANIKILTKKR------PRQLLKMVASFQNLRLSVLHLNVSTV 286 (329)
Q Consensus 239 ~~~VeV~~~e~~~~IkI~c~~r------pg~L~~Il~aLe~lgL~Vv~anvSt~ 286 (329)
..+|.|++.++.+.|.+.+.+. ...+-+|-+.|.+.||.+..++|+..
T Consensus 100 ~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 100 QVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp CEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred cEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 4678888889999999998764 33577888899999999999999864
No 62
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=34.16 E-value=41 Score=23.63 Aligned_cols=23 Identities=13% Similarity=0.393 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 020210 135 AVERNRRKQMNEYLAILRSLMPP 157 (329)
Q Consensus 135 ~~ER~RR~~mn~~~~~LrslvP~ 157 (329)
.++|-+|...++-+..|+.+.|.
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~ 25 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPD 25 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 46788999999999999999998
No 63
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=33.27 E-value=41 Score=22.44 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 020210 174 NFVKELEQLLQSMEAQKRNTS 194 (329)
Q Consensus 174 ~YIk~Lq~~v~~L~~~~~~~~ 194 (329)
.|+-+|+.+++.|+.+...+.
T Consensus 3 aYl~eLE~r~k~le~~naeLE 23 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELE 23 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 377778877777777666554
No 64
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=32.93 E-value=40 Score=23.46 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 020210 174 NFVKELEQLLQSMEAQKRNTS 194 (329)
Q Consensus 174 ~YIk~Lq~~v~~L~~~~~~~~ 194 (329)
.||..|+.+|..|+.+...+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888777654
No 65
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=32.75 E-value=50 Score=19.79 Aligned_cols=20 Identities=5% Similarity=0.109 Sum_probs=15.3
Q ss_pred CchhhhHHHHHHHHHHHHHH
Q 020210 163 GDQASVIGGSINFVKELEQL 182 (329)
Q Consensus 163 ~dKasIL~~AI~YIk~Lq~~ 182 (329)
+....+|-+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 34567899999999877663
No 66
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=32.18 E-value=2e+02 Score=28.49 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=43.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecCCCccCCHHHHHHHHHH
Q 020210 250 HANIKILTKKRPRQLLKMVASFQNLRLSVLHLNVSTV--DQMVLYSVSVKVEEGSQLNTVDEIAAAVHQ 316 (329)
Q Consensus 250 ~~~IkI~c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~--~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~ 316 (329)
...|-+.-.++||.+-+|...|-+.++.|-+.++... ++..+..|.+ ++. + .+++.++|.+
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v--d~~--~--~~~~l~~l~~ 516 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQD--V--PDDVRTAIAA 516 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--SSC--C--CHHHHHHHHH
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE--CCC--C--CHHHHHHHhc
Confidence 3456666789999999999999999999999999875 5555544444 322 2 2555555554
No 67
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=30.06 E-value=1.9e+02 Score=25.87 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhCC--CeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHHH
Q 020210 263 QLLKMVASFQNLR--LSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQILL 319 (329)
Q Consensus 263 ~L~~Il~aLe~lg--L~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il~ 319 (329)
.+-+|.+.+++.. .+|.+..+-..|...+.++++.++++..+...++|.+.+.+.+.
T Consensus 207 ~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~ 265 (283)
T 3h90_A 207 ERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAIL 265 (283)
T ss_dssp HHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 5667777777764 68888888888888778899998876433345566666666654
No 68
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=29.22 E-value=1.6e+02 Score=28.27 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=38.4
Q ss_pred EEEeCCeeEEEEE-eCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEE
Q 020210 244 VNMAESHANIKIL-TKKRPRQLLKMVASFQNLRLSVLHLNVSTV---DQMVLYSVSVK 297 (329)
Q Consensus 244 V~~~e~~~~IkI~-c~~rpg~L~~Il~aLe~lgL~Vv~anvSt~---~~~vl~s~~vK 297 (329)
|....+.+.|.|. ...++|.+.+|+..|.+.++.|.....++. ++..-.+|.+.
T Consensus 258 i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~ 315 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCP 315 (421)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEE
T ss_pred EEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEe
Confidence 3445677788888 577899999999999999999887754332 23333444444
No 69
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.12 E-value=46 Score=24.52 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020210 174 NFVKELEQLLQSMEAQKR 191 (329)
Q Consensus 174 ~YIk~Lq~~v~~L~~~~~ 191 (329)
.||+.|+.+|..|+....
T Consensus 29 ~~i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566777777666665443
No 70
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=28.81 E-value=1.7e+02 Score=28.07 Aligned_cols=65 Identities=15% Similarity=0.328 Sum_probs=42.7
Q ss_pred EEEeCCeeEEEEEeC---CCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecCCCccCCHHHHHHHHHHHH
Q 020210 244 VNMAESHANIKILTK---KRPRQLLKMVASFQNLRLSVLHLNVSTVDQMVLYSVSVKVEEGSQLNTVDEIAAAVHQIL 318 (329)
Q Consensus 244 V~~~e~~~~IkI~c~---~rpg~L~~Il~aLe~lgL~Vv~anvSt~~~~vl~s~~vKv~e~~~l~s~~eI~~aL~~il 318 (329)
|.+.++-+.|.|... .+||.+.+++++|.+.++.|.-.. +.... +++=|++. ..++..++|++.+
T Consensus 338 v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~----is~vV~~~----d~~~Av~~Lh~~f 405 (421)
T 3ab4_A 338 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIR----ISVLIRED----DLDAAARALHEQF 405 (421)
T ss_dssp EEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EETTE----EEEEEEGG----GHHHHHHHHHHHT
T ss_pred EEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCe----EEEEEeHH----HHHHHHHHHHHHH
Confidence 444566677888774 589999999999999999998443 33433 23333322 2466666666554
No 71
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=27.91 E-value=74 Score=26.54 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCC--CCCCCchhhhHHHHHHHHHHH
Q 020210 143 QMNEYLAILRSLMPPS--YVQRGDQASVIGGSINFVKEL 179 (329)
Q Consensus 143 ~mn~~~~~LrslvP~~--~~~k~dKasIL~~AI~YIk~L 179 (329)
-|.-.|..|..++|.- ...+.-|.-||..|.+++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 3678899999999972 234667889999999998776
No 72
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=27.31 E-value=79 Score=23.43 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 020210 173 INFVKELEQLLQSMEAQKRNTS 194 (329)
Q Consensus 173 I~YIk~Lq~~v~~L~~~~~~~~ 194 (329)
-.||..|+++|+.|+..+..+.
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3599999999999999887754
No 73
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=27.27 E-value=2e+02 Score=24.92 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=38.2
Q ss_pred EEEeCCeeEEEEE-eCCCCChHHHHHHHHHhCCCeEEEEE--EEee-CCEEEEEEEEE
Q 020210 244 VNMAESHANIKIL-TKKRPRQLLKMVASFQNLRLSVLHLN--VSTV-DQMVLYSVSVK 297 (329)
Q Consensus 244 V~~~e~~~~IkI~-c~~rpg~L~~Il~aLe~lgL~Vv~an--vSt~-~~~vl~s~~vK 297 (329)
|....+.+.|.|. .+.+||.+.+|+..|.+.++.|-... ++.. ++....+|.+.
T Consensus 29 Ia~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~ 86 (200)
T 4go7_X 29 VAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 86 (200)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEE
T ss_pred EEccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecc
Confidence 3445667777776 47899999999999999998766553 3332 44556677765
No 74
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=25.93 E-value=62 Score=20.00 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 020210 176 VKELEQLLQSMEAQ 189 (329)
Q Consensus 176 Ik~Lq~~v~~L~~~ 189 (329)
+++||+++.+|+..
T Consensus 15 vq~lq~r~drle~t 28 (32)
T 2akf_A 15 VQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555554443
No 75
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=23.01 E-value=48 Score=19.40 Aligned_cols=10 Identities=40% Similarity=0.644 Sum_probs=6.1
Q ss_pred hHHHHHHHHH
Q 020210 134 IAVERNRRKQ 143 (329)
Q Consensus 134 ~~~ER~RR~~ 143 (329)
.-+||+||..
T Consensus 10 sgaerrrrra 19 (26)
T 1g70_B 10 SGAERRRRRA 19 (26)
T ss_pred chHHHHHHHH
Confidence 3467777654
No 76
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.60 E-value=1.1e+02 Score=23.18 Aligned_cols=25 Identities=8% Similarity=0.260 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 020210 169 IGGSINFVKELEQLLQSMEAQKRNT 193 (329)
Q Consensus 169 L~~AI~YIk~Lq~~v~~L~~~~~~~ 193 (329)
+..||+-|.-||.++++|+.+...+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999998877654
No 77
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.37 E-value=1.4e+02 Score=22.98 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=27.0
Q ss_pred CeeEEEEEeC---C---CCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 020210 249 SHANIKILTK---K---RPRQLLKMVASFQNLRLSVLHLNVSTVD 287 (329)
Q Consensus 249 ~~~~IkI~c~---~---rpg~L~~Il~aLe~lgL~Vv~anvSt~~ 287 (329)
..++|.++.. . -+.++..|++.|..+| +|+.+++....
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~d~ 51 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVEDK 51 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECSSS
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEecCC
Confidence 4556666542 1 2347899999999999 89998876543
No 78
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.26 E-value=2.3e+02 Score=21.61 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020210 141 RKQMNEYLAILRSLMPPSYVQRGDQASVIGGSINFVKELEQLLQSMEAQKRNTSQ 195 (329)
Q Consensus 141 R~~mn~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~~~ 195 (329)
|++..+.|..||.=+ ..=|..-+.-|+.|+..|+.++..+..+..
T Consensus 35 rqkekEqL~~LKkkl----------~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 35 RARAKEQLAALKKHK----------ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777788888887543 122556677777788888777776666543
Done!