BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020211
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SJ5|A Chain A, Crystal Structure Of A Duf151 Family Protein (tm0160) From
Thermotoga Maritima At 2.8 A Resolution
pdb|1SJ5|B Chain B, Crystal Structure Of A Duf151 Family Protein (tm0160) From
Thermotoga Maritima At 2.8 A Resolution
Length = 164
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 211 NTYFAKLYL-------SKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRI 262
NT++A L + + + +I +D RPSDAI +A + API+VS ++V K +I +
Sbjct: 95 NTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIEL 153
>pdb|1VJL|A Chain A, Crystal Structure Of A Duf151 Family Protein (Tm0160) From
Thermotoga Maritima At 1.90 A Resolution
pdb|1VJL|B Chain B, Crystal Structure Of A Duf151 Family Protein (Tm0160) From
Thermotoga Maritima At 1.90 A Resolution
Length = 164
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 211 NTYFAKLYL-------SKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRI 262
NT++A L + + + +I +D RPSDAI +A + API+VS ++V K +I +
Sbjct: 95 NTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIEL 153
>pdb|4HAO|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
pdb|4HAO|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
Length = 304
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 115 LVPFSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALL 174
LVP T R V S +F T L+ISCD LPI GE ++L
Sbjct: 209 LVPMFPHTLTARPLVISSSSTIRLKFSHITSDLEISCDSQIALPIQEGE----EVLIRRS 264
Query: 175 DDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYF 214
D + P + + + KLG+ K+ N YF
Sbjct: 265 DFHLNLIHPKDYSYFNTLSTKLGWSKKLFE------NLYF 298
>pdb|3U0A|A Chain A, Crystal Structure Of An Acyl-Coa Thioesterase Ii Tesb2
From Mycobacterium Marinum
pdb|3U0A|B Chain B, Crystal Structure Of An Acyl-Coa Thioesterase Ii Tesb2
From Mycobacterium Marinum
Length = 285
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 112 SGQLVPFSVRTKEPRGDVTSIGPEFLRR--FQSPTIFL 147
+GQ + +VRT +PR V S+ FLR Q PT+FL
Sbjct: 42 AGQSLVSAVRTVDPRYQVHSLHGYFLRSGDAQEPTVFL 79
>pdb|1K1X|A Chain A, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1X|B Chain B, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1Y|A Chain A, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
pdb|1K1Y|B Chain B, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
Length = 659
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 180 EDCPDQFQFVKNVVEKLGYEVKMVRITERV 209
ED Q + +K+ KLGY+ K V +TERV
Sbjct: 96 EDRLVQIEMLKDYARKLGYDAKGVWLTERV 125
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 180 EDCPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIIS 229
ED P Q + +K+++E+ GY+ TE V N A +LS + IIS
Sbjct: 14 EDSPTQAEHLKHILEETGYQ------TEHVRNGREAVRFLSLTRPDLIIS 57
>pdb|2AN1|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|C Chain C, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|D Chain D, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
Length = 292
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 115 LVPFSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALL 174
LVP T R V + RF L+ISCD LPI GE +L
Sbjct: 208 LVPMFPHTLSARPLVINSSSTIRLRFSHRRSDLEISCDSQIALPIQEGE----DVLIRRC 263
Query: 175 DDGEDEDCPDQFQFVKNVVEKLGYEVKM 202
D + P + + + KLG+ K+
Sbjct: 264 DYHLNLIHPKDYSYFNTLSTKLGWSKKL 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,351,279
Number of Sequences: 62578
Number of extensions: 365069
Number of successful extensions: 769
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 8
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)