BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020211
(329 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1
Length = 329
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 113/184 (61%), Gaps = 6/184 (3%)
Query: 144 TIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMV 203
I LK+ LLPIIV E L+ A+ + P +Q VK++V+K+GYEV++V
Sbjct: 139 AIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR--PTMYQVVKDMVDKMGYEVRLV 196
Query: 204 RITERVVNTYFAKLYLSKPG-KNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRI 262
R+T RV YFA+LYLSK G K++ +S D+RPSDAIN+A RC+ PI V+K++ D +R+
Sbjct: 197 RVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 256
Query: 263 ---GYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKL 319
G + + LD P T+EFDLV+NM AV EERY++AA++RDKL
Sbjct: 257 IDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNMMQAVDEERYDEAAEWRDKL 316
Query: 320 LKLR 323
K +
Sbjct: 317 GKFQ 320
>sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1
Length = 325
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 113/186 (60%), Gaps = 8/186 (4%)
Query: 143 PTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKM 202
P I LK+ LLPIIV E L+ A+ + P +Q VK +V+K+GYEV++
Sbjct: 134 PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR--PTMYQVVKEMVDKMGYEVRL 191
Query: 203 VRITERVVNTYFAKLYLSKPGK-NEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIR 261
VR+T+RV YFA+L+LSK G +E +S D+RPSDAIN+A RC+ PI V+K++ D +R
Sbjct: 192 VRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAVRCKIPIQVNKYLAYSDGMR 251
Query: 262 IGYGMGRAHGAKATYDVSLDSAAEGPDSV----TEEFDLVKNMDIAVREERYNDAAKFRD 317
+ G+ D L + + P+ T+EF+++ M AV EERY++AA++RD
Sbjct: 252 V-IESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILSKMMQAVDEERYDEAAEWRD 310
Query: 318 KLLKLR 323
KL + R
Sbjct: 311 KLGQFR 316
>sp|Q6YZM6|BBD2_ORYSJ Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica GN=BBD2
PE=2 SV=1
Length = 325
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 108/188 (57%), Gaps = 12/188 (6%)
Query: 143 PTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKM 202
P I L+I + LLPIIV E L+ A+ + P +Q VK +++K+GYEVK+
Sbjct: 136 PAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIAR--PTIYQVVKEMIDKMGYEVKL 193
Query: 203 VRITERVVNTYFAKLYLSKPGKN-EIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAI- 260
VRI +R+ Y A+L+L+K G + E I+ D+RPSDAIN+A RC+ PI V + + D I
Sbjct: 194 VRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVRCKVPIQVHRSLAYSDGIR 253
Query: 261 -----RIGYGMGRAHGAKATYDVSLDSAAEGPDSVTEEFDLVKNMDIAVREERYNDAAKF 315
R+ G + G T LD P +EF L++NM IA EERY DAA +
Sbjct: 254 SVEPARMAIAAGMSDGLLFT---ELDRPDGQPCVEAQEFGLIRNMLIAAVEERYKDAATW 310
Query: 316 RDKLLKLR 323
RDKL+ LR
Sbjct: 311 RDKLMLLR 318
>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3
SV=1
Length = 331
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 116/197 (58%), Gaps = 8/197 (4%)
Query: 133 GPEFLR-RFQSP--TIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFV 189
P LR R +P I LK+ D LLPIIV E LL AL + P + V
Sbjct: 130 NPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIPR--PTIYNVV 187
Query: 190 KNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPG-KNEIISVDVRPSDAINVANRCEAPI 248
K + E++GY V++VRITE V + Y+++LYL+K G + E IS+D++PSDAIN+A RC+ PI
Sbjct: 188 KEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINIAFRCKVPI 247
Query: 249 YVSKHIVLKDAIRIGYGM-GRAHGAKATYDVS-LDSAAEGPDSVTEEFDLVKNMDIAVRE 306
V++ I + +++ ++ + + + LD + P +EFDLV+NM +A E
Sbjct: 248 QVNRRIAYNNGLKVVQPTPSESYVSSDQFQCTRLDRPDDQPCFEAQEFDLVRNMLVAAVE 307
Query: 307 ERYNDAAKFRDKLLKLR 323
ERY DAA++RD+L R
Sbjct: 308 ERYKDAAQYRDQLFMFR 324
>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1
PE=2 SV=1
Length = 331
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 116/197 (58%), Gaps = 8/197 (4%)
Query: 133 GPEFLR-RFQSP--TIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFV 189
P LR R +P I LK+ D LLPIIV E LL AL + P + V
Sbjct: 130 NPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIPR--PTIYNVV 187
Query: 190 KNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPG-KNEIISVDVRPSDAINVANRCEAPI 248
K + E++GY V++VRITE V + Y+++LYL+K G + E IS+D++PSDAIN+A RC+ PI
Sbjct: 188 KEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINIAFRCKVPI 247
Query: 249 YVSKHIVLKDAIRIGYGM-GRAHGAKATYDVS-LDSAAEGPDSVTEEFDLVKNMDIAVRE 306
V++ I + +++ ++ + + + LD + P +EFDLV+NM +A E
Sbjct: 248 QVNRRIAYNNGLKVVQPTPSESYVSSDQFQYTRLDRPDDQPCFEAQEFDLVRNMLVAAVE 307
Query: 307 ERYNDAAKFRDKLLKLR 323
ERY DAA++RD+L R
Sbjct: 308 ERYKDAAQYRDQLFMFR 324
>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1
Length = 331
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 116/197 (58%), Gaps = 8/197 (4%)
Query: 133 GPEFLR-RFQSP--TIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFV 189
P LR R +P I LK+ D LLPIIV E LL AL + P + V
Sbjct: 130 NPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIPR--PTIYNVV 187
Query: 190 KNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPG-KNEIISVDVRPSDAINVANRCEAPI 248
K + E++GY V++VRITE V + Y+++LYL+K G + E IS+D++PSDAIN+A RC+ PI
Sbjct: 188 KEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINIAFRCKVPI 247
Query: 249 YVSKHIVLKDAIRIGYGM-GRAHGAKATYDVS-LDSAAEGPDSVTEEFDLVKNMDIAVRE 306
V++ I + +++ ++ + + + LD + P +EFDLV+NM +A E
Sbjct: 248 QVNRRIAYNNGLKVVQPTPSESYVSSDQFQYTRLDRPDDQPCFEAQEFDLVRNMLVAAVE 307
Query: 307 ERYNDAAKFRDKLLKLR 323
ERY DAA++RD+L R
Sbjct: 308 ERYKDAAQYRDQLFMFR 324
>sp|Q50604|Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 OS=Mycobacterium tuberculosis
GN=Rv1829 PE=4 SV=2
Length = 164
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 127 GDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQF 186
G+V +G + P + L+ +GD LPI +G+ + AL G + P
Sbjct: 2 GEVRVVGIRVEQPQNQPVLLLR-EANGDRYLPIWIGQSEAAAI--ALEQQGVEPPRPLTH 58
Query: 187 QFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEA 246
+++++ LG+ +K VRI + T++A L + I V RPSD++ +A R
Sbjct: 59 DLIRDLIAALGHSLKEVRIVDLQEGTFYADLIFDRN-----IKVSARPSDSVAIALRVGV 113
Query: 247 PIYVSKHIVLKDAIRI 262
PIYV + ++ + + I
Sbjct: 114 PIYVEEAVLAQAGLLI 129
>sp|Q97LQ2|UVRB_CLOAB UvrABC system protein B OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=uvrB PE=3 SV=1
Length = 666
Score = 34.7 bits (78), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 252 KHIVLKDAIRIGYGMGRAHGAKATYDVSLDSAAEGP----DSVTEEFDLVKNMDIAVREE 307
K +K A+R G+ K Y S+D A + D + +EF+ K M A +E
Sbjct: 583 KPTTIKKAVRDVIGISEVAEGKTEYK-SMDEAVKADNKNIDKLIKEFE--KEMKEAAKEL 639
Query: 308 RYNDAAKFRDKLLKLRKSIHDH 329
++ AA FRDK+ +L+K ++++
Sbjct: 640 QFEKAAYFRDKVNELKKKLNEN 661
>sp|Q8D8C7|UVRC_VIBVU UvrABC system protein C OS=Vibrio vulnificus (strain CMCP6) GN=uvrC
PE=3 SV=2
Length = 610
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 285 EGPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKLLKLRK 324
+G D+ E LV+ M+IA ++ ++ DAAKFRD++ +R+
Sbjct: 200 QGKDNQVLEL-LVQKMEIASQQLKFEDAAKFRDQIQAIRR 238
>sp|Q7MM39|UVRC_VIBVY UvrABC system protein C OS=Vibrio vulnificus (strain YJ016) GN=uvrC
PE=3 SV=1
Length = 610
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 285 EGPDSVTEEFDLVKNMDIAVREERYNDAAKFRDKLLKLRK 324
+G D+ E LV+ M+IA ++ ++ DAAKFRD++ +R+
Sbjct: 200 QGKDNQVLEL-LVQKMEIASQQLKFEDAAKFRDQIQAIRR 238
>sp|Q87NC4|UVRC_VIBPA UvrABC system protein C OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=uvrC PE=3 SV=1
Length = 610
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324
L++ M++A ++ R+ DAAKFRD++ +R+
Sbjct: 210 LIEKMEVASQQLRFEDAAKFRDQIQAIRR 238
>sp|A9L582|UVRC_SHEB9 UvrABC system protein C OS=Shewanella baltica (strain OS195)
GN=uvrC PE=3 SV=1
Length = 609
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324
LV M++A + Y AA+FRD+++ LRK
Sbjct: 209 LVDKMELAAERQAYEQAARFRDQIMALRK 237
>sp|A6WPJ5|UVRC_SHEB8 UvrABC system protein C OS=Shewanella baltica (strain OS185)
GN=uvrC PE=3 SV=1
Length = 609
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324
LV M++A + Y AA+FRD+++ LRK
Sbjct: 209 LVDKMELAAERQAYEQAARFRDQIMALRK 237
>sp|A3D5P1|UVRC_SHEB5 UvrABC system protein C OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=uvrC PE=3 SV=1
Length = 609
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324
LV M++A + Y AA+FRD+++ LRK
Sbjct: 209 LVDKMELAAERQAYEQAARFRDQIMALRK 237
>sp|Q8TC99|FNDC8_HUMAN Fibronectin type III domain-containing protein 8 OS=Homo sapiens
GN=FNDC8 PE=2 SV=2
Length = 324
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 116 VPFSVRTKEPRGDVTSIGPEFLRRFQ 141
+ +VR KEPR + SIGPE +RR +
Sbjct: 291 IQITVRRKEPRQKIVSIGPEEMRRLE 316
>sp|Q2NS01|PPNK_SODGM Probable inorganic polyphosphate/ATP-NAD kinase OS=Sodalis
glossinidius (strain morsitans) GN=ppnK PE=3 SV=1
Length = 292
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 115 LVPFSVRTKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALL 174
LVP T R V + G +F T L+ISCD LPI GE ++
Sbjct: 208 LVPMFPHTLSSRPLVINGGSTIRLKFSQLTPDLEISCDSQIALPIQDGE----EIFIRRS 263
Query: 175 DDGEDEDCPDQFQFVKNVVEKLGYEVKM 202
D D P+ + + + KLG+ K+
Sbjct: 264 DYYLDLIHPNDYNYFNTLSSKLGWSKKL 291
>sp|A8F8W9|UVRB_THELT UvrABC system protein B OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=uvrB PE=3 SV=1
Length = 656
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 303 AVREERYNDAAKFRDKLLKLRKSIHDH 329
A E RY DAAK RD++ +LR+ + D
Sbjct: 627 AASELRYEDAAKLRDEIFRLREELKDE 653
>sp|Q8CPC5|SBCC_STAES Nuclease SbcCD subunit C OS=Staphylococcus epidermidis (strain ATCC
12228) GN=sbcC PE=3 SV=1
Length = 1009
Score = 31.2 bits (69), Expect = 9.9, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 184 DQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISV 230
D + +N ++KL E+KM++ +V+ TYF +L K K+E++S+
Sbjct: 291 DDLKKEQNYIDKLKQELKMIQ-ESKVLITYFTRLQSLKKDKDELVSL 336
>sp|Q5HPJ3|SBCC_STAEQ Nuclease SbcCD subunit C OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=sbcC PE=3 SV=1
Length = 1009
Score = 31.2 bits (69), Expect = 9.9, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 184 DQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISV 230
D + +N ++KL E+KM++ +V+ TYF +L K K+E++S+
Sbjct: 291 DDLKKEQNYIDKLKQELKMIQ-ESKVLITYFTRLQSLKKDKDELVSL 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,093,883
Number of Sequences: 539616
Number of extensions: 4871322
Number of successful extensions: 11905
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 11869
Number of HSP's gapped (non-prelim): 25
length of query: 329
length of database: 191,569,459
effective HSP length: 118
effective length of query: 211
effective length of database: 127,894,771
effective search space: 26985796681
effective search space used: 26985796681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)