Query 020211
Match_columns 329
No_of_seqs 246 out of 809
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:55:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02577 DNase-RNase: Bifuncti 100.0 3.5E-36 7.6E-41 258.0 16.8 131 129-264 1-131 (135)
2 COG1259 Uncharacterized conser 100.0 2.3E-34 5.1E-39 251.6 17.0 135 127-265 4-138 (151)
3 PF02151 UVR: UvrB/uvrC motif; 98.4 5.9E-07 1.3E-11 61.3 4.4 32 294-325 4-36 (36)
4 COG3880 Modulator of heat shoc 98.1 3.1E-06 6.7E-11 76.1 4.2 38 290-327 134-172 (176)
5 COG0556 UvrB Helicase subunit 95.5 0.014 3.1E-07 61.3 4.4 36 291-326 623-659 (663)
6 PRK05298 excinuclease ABC subu 94.8 0.029 6.4E-07 59.8 4.2 35 292-326 613-648 (652)
7 TIGR00631 uvrb excinuclease AB 94.7 0.026 5.6E-07 60.4 3.6 28 296-323 628-655 (655)
8 PRK07883 hypothetical protein; 94.2 0.048 1E-06 57.3 4.3 29 296-324 411-439 (557)
9 PRK00558 uvrC excinuclease ABC 94.2 0.048 1E-06 57.9 4.2 30 296-325 207-236 (598)
10 PRK12306 uvrC excinuclease ABC 93.4 0.083 1.8E-06 55.3 4.2 29 296-324 197-225 (519)
11 PRK14666 uvrC excinuclease ABC 93.3 0.087 1.9E-06 56.9 4.3 29 296-324 206-234 (694)
12 PRK14667 uvrC excinuclease ABC 93.0 0.11 2.4E-06 55.0 4.3 29 296-324 204-232 (567)
13 PRK14672 uvrC excinuclease ABC 92.9 0.11 2.4E-06 56.0 4.3 29 296-324 210-238 (691)
14 TIGR00194 uvrC excinuclease AB 92.8 0.11 2.4E-06 55.0 4.2 29 296-324 199-227 (574)
15 PRK14670 uvrC excinuclease ABC 92.8 0.12 2.6E-06 54.8 4.3 29 296-324 182-210 (574)
16 PRK14668 uvrC excinuclease ABC 92.8 0.11 2.4E-06 55.0 4.1 29 296-324 204-232 (577)
17 PRK14671 uvrC excinuclease ABC 92.7 0.12 2.6E-06 55.2 4.3 29 296-324 220-248 (621)
18 PRK14669 uvrC excinuclease ABC 92.5 0.13 2.9E-06 55.0 4.3 29 296-324 208-236 (624)
19 COG0322 UvrC Nuclease subunit 90.9 0.25 5.4E-06 52.5 4.2 29 296-324 207-235 (581)
20 PF13670 PepSY_2: Peptidase pr 44.6 1.3E+02 0.0028 23.4 7.1 48 184-234 29-76 (83)
21 PF12386 Peptidase_C71: Pseudo 37.7 99 0.0021 27.3 5.8 44 180-223 55-99 (142)
22 PF10130 PIN_2: PIN domain; I 37.5 23 0.00051 30.7 2.0 72 182-261 50-121 (133)
23 PF14305 ATPgrasp_TupA: TupA-l 36.7 92 0.002 29.3 6.0 47 177-223 172-220 (239)
24 PF13838 Clathrin_H_link: Clat 31.5 49 0.0011 25.8 2.7 20 296-315 9-28 (66)
25 KOG4825 Component of synaptic 30.8 30 0.00066 36.5 1.9 21 303-323 219-239 (666)
26 PF04420 CHD5: CHD5-like prote 29.4 49 0.0011 29.4 2.8 37 291-327 46-83 (161)
27 cd06409 PB1_MUG70 The MUG70 pr 29.0 1.5E+02 0.0032 24.2 5.2 55 185-247 23-77 (86)
28 PRK11020 hypothetical protein; 27.2 97 0.0021 26.8 4.0 36 292-327 12-48 (118)
29 PF13793 Pribosyltran_N: N-ter 24.5 1.8E+02 0.0039 24.5 5.2 42 183-224 7-48 (116)
30 TIGR00638 Mop molybdenum-pteri 24.3 2E+02 0.0043 20.8 4.9 51 200-251 8-58 (69)
31 TIGR02726 phenyl_P_delta pheny 22.6 2.8E+02 0.0061 24.7 6.4 48 201-250 7-55 (169)
32 cd07963 Anticodon_Ia_Cys Antic 22.0 1.2E+02 0.0025 26.2 3.7 29 294-322 112-141 (156)
33 PF06312 Neurexophilin: Neurex 20.8 1.3E+02 0.0029 28.5 4.0 38 203-240 87-124 (219)
34 PF14538 Raptor_N: Raptor N-te 20.7 1E+02 0.0022 27.4 3.1 41 122-163 88-128 (154)
No 1
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=100.00 E-value=3.5e-36 Score=258.03 Aligned_cols=131 Identities=34% Similarity=0.521 Sum_probs=111.0
Q ss_pred eeeccceeccCCCCcEEEEEeecCCcEEEEEEECHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHhCCeEeEEEEEee
Q 020211 129 VTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITER 208 (329)
Q Consensus 129 v~~~g~g~l~~~~~pvIvLk~e~~g~r~LPI~IG~~EA~aI~~al~~~g~~~~RPlTHDLl~~vle~lg~~v~~V~I~~l 208 (329)
+++.|+.+.++.++|+++|++ +++++.||||||..||.+|+.++. |.+++||+|||||.++++++|.++++|+|+++
T Consensus 1 ~~v~gi~~~~~~~~~vvlL~~-~~~~~~lpI~i~~~ea~~i~~~~~--~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~ 77 (135)
T PF02577_consen 1 MEVKGISVDEPSGQPVVLLRE-EDGDRVLPIWIGAFEAQAIALALE--GEKPPRPLTHDLLSDLLEALGAEVERVVIDDL 77 (135)
T ss_dssp -EEEEEEEETTTTEEEEEEEE-TTSSEEEEEE--HHHHHHHHHHHC--T---SS--HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CEEEEEEEcCCCCceEEEEEE-cCCCEEEEEEECHHHHHHHHHHHc--CCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEE
Confidence 357899999999999999997 789999999999999999999986 79999999999999999999999999999999
Q ss_pred eCCEEEEEEEEecCCcceEEEEeCChHHHHHHHHHcCCCeEEeHhhhhhcceeccC
Q 020211 209 VVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGY 264 (329)
Q Consensus 209 ~dGvFyA~L~l~~~ge~~~~~IDaRPSDAIaLAlR~~~PIyV~eeVl~~agI~i~~ 264 (329)
+||+|||+|++.+++ +...+|+||||||+||+|+++||||+++|++++++++..
T Consensus 78 ~dg~f~A~L~l~~~~--~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~~~ 131 (135)
T PF02577_consen 78 EDGVFYARLVLRQGG--EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPVEE 131 (135)
T ss_dssp ETTEEEEEEEEEETT--TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE--H
T ss_pred ECCEEEEEEEEecCC--EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCCch
Confidence 999999999999766 579999999999999999999999999999999999863
No 2
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.3e-34 Score=251.58 Aligned_cols=135 Identities=32% Similarity=0.453 Sum_probs=122.5
Q ss_pred cceeeccceeccCCCCcEEEEEeecCCcEEEEEEECHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHhCCeEeEEEEE
Q 020211 127 GDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRIT 206 (329)
Q Consensus 127 ~~v~~~g~g~l~~~~~pvIvLk~e~~g~r~LPI~IG~~EA~aI~~al~~~g~~~~RPlTHDLl~~vle~lg~~v~~V~I~ 206 (329)
..++++|+.+.+....|++++..+.+.++.||||||..||.+|+.++. +..++||+||||+.++++.++.++.+|+|+
T Consensus 4 ~e~~~~~i~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~--~~~p~RP~tHdll~~i~~~l~~~v~kVvI~ 81 (151)
T COG1259 4 IEVEVVGIFFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALE--GVEPPRPLTHDLLVEIFEELGARVEKVVID 81 (151)
T ss_pred ccceEeEEEEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhCCcEEEEEEE
Confidence 346689999999999996665555677789999999999999999975 799999999999999999999999999999
Q ss_pred eeeCCEEEEEEEEecCCcceEEEEeCChHHHHHHHHHcCCCeEEeHhhhhhcceeccCC
Q 020211 207 ERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGYG 265 (329)
Q Consensus 207 ~l~dGvFyA~L~l~~~ge~~~~~IDaRPSDAIaLAlR~~~PIyV~eeVl~~agI~i~~~ 265 (329)
+++||||||+|++++++ ....+||||||||+||+|.++||||.|+|+++++++...+
T Consensus 82 d~~d~tyyA~L~~~~~~--~~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~~~~ 138 (151)
T COG1259 82 DLIDNTYYATLILEQDD--GKIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEIEDE 138 (151)
T ss_pred EeccCeEEEEEEEEcCC--ceEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcCccc
Confidence 99999999999999876 4589999999999999999999999999999998877643
No 3
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=98.36 E-value=5.9e-07 Score=61.31 Aligned_cols=32 Identities=34% Similarity=0.601 Sum_probs=28.4
Q ss_pred hH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhh
Q 020211 294 FD-LVKNMDIAVREERYNDAAKFRDKLLKLRKS 325 (329)
Q Consensus 294 l~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~ 325 (329)
+. |...|..|+++++||+||.|||+|..|+++
T Consensus 4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q 36 (36)
T PF02151_consen 4 IKELEEKMEEAVENEDFEKAARLRDQIKALKKQ 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 44 889999999999999999999999999864
No 4
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=98.09 E-value=3.1e-06 Score=76.08 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=34.2
Q ss_pred chhhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhcc
Q 020211 290 VTEEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSIH 327 (329)
Q Consensus 290 ~~~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~~ 327 (329)
.++++. |++.|+++|+.|+||+||.+||||+.|+.+.+
T Consensus 134 ~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~~ 172 (176)
T COG3880 134 PKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKNG 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 367777 99999999999999999999999999997644
No 5
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.54 E-value=0.014 Score=61.27 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=31.9
Q ss_pred hhhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhc
Q 020211 291 TEEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSI 326 (329)
Q Consensus 291 ~~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~ 326 (329)
...++ |+++|.+|.++-+||+||++||+|++|+++.
T Consensus 623 ~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~~ 659 (663)
T COG0556 623 EKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEEL 659 (663)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 34555 8999999999999999999999999999764
No 6
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.77 E-value=0.029 Score=59.77 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=31.0
Q ss_pred hhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhc
Q 020211 292 EEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSI 326 (329)
Q Consensus 292 ~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~ 326 (329)
..++ |+++|++|.++.+||+||++||+|+.|++.+
T Consensus 613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~ 648 (652)
T PRK05298 613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEEL 648 (652)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3444 9999999999999999999999999998654
No 7
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.70 E-value=0.026 Score=60.41 Aligned_cols=28 Identities=39% Similarity=0.694 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLLKLR 323 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~ 323 (329)
|+++|++|.++.+||+||++||+|+.|+
T Consensus 628 l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 628 LEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999875
No 8
>PRK07883 hypothetical protein; Validated
Probab=94.24 E-value=0.048 Score=57.27 Aligned_cols=29 Identities=34% Similarity=0.581 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~ 324 (329)
|++.|+.|.++.+||+||++||+|..++.
T Consensus 411 l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~ 439 (557)
T PRK07883 411 LRARIDRLAAAERFEEAARLRDRLAALLR 439 (557)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999974
No 9
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=94.22 E-value=0.048 Score=57.87 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHhh
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLLKLRKS 325 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~ 325 (329)
|++.|+.|.++.+||+||++||+|..+++-
T Consensus 207 L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~ 236 (598)
T PRK00558 207 LEEKMEEASENLEFERAARYRDQIQALRRV 236 (598)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999753
No 10
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=93.39 E-value=0.083 Score=55.31 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~ 324 (329)
|++.|+.|.++.+||+||++||.|..++.
T Consensus 197 L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~ 225 (519)
T PRK12306 197 LEEEMAEKAKNQQFERALVIRDEINAIEN 225 (519)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999974
No 11
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=93.34 E-value=0.087 Score=56.91 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~ 324 (329)
|++.|++|.++.+||+||++||+|+.++.
T Consensus 206 L~~~M~~AAe~l~FE~AA~lRD~i~aL~~ 234 (694)
T PRK14666 206 LRTEMEAASEALEFERAAVLRDQIRAVER 234 (694)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999974
No 12
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=92.96 E-value=0.11 Score=55.00 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~ 324 (329)
|.+.|+.|.++.+||+||++||.|..++.
T Consensus 204 L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~ 232 (567)
T PRK14667 204 LYDKIEEYSQKLMFEKAAVIRDQILALEN 232 (567)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999874
No 13
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=92.89 E-value=0.11 Score=56.01 Aligned_cols=29 Identities=41% Similarity=0.607 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~ 324 (329)
|.+.|+.|.++.+||+||++||+|+.++.
T Consensus 210 L~~~M~~AA~~l~FE~AA~lRD~i~aL~~ 238 (691)
T PRK14672 210 LEKRMKRAVRQEAFEAAARIRDDIQAIRC 238 (691)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999973
No 14
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=92.85 E-value=0.11 Score=55.00 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~ 324 (329)
|.+.|+.|.++.+||+||++||+|+.++.
T Consensus 199 L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~ 227 (574)
T TIGR00194 199 LEQKMEKASENLEFEEAARIRDQIAAVRE 227 (574)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999974
No 15
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=92.81 E-value=0.12 Score=54.83 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~ 324 (329)
|.+.|+.|.++.+||+||++||+|..++.
T Consensus 182 L~~~M~~aa~~l~FE~Aa~~RD~i~al~~ 210 (574)
T PRK14670 182 IEIKMKEAIQKEDFEAAIKLKETKRSLIE 210 (574)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999974
No 16
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=92.79 E-value=0.11 Score=54.96 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~ 324 (329)
|++.|+.|.++.+||+||++||+|+.++.
T Consensus 204 l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~ 232 (577)
T PRK14668 204 LRREMEAAAQAQEFERAANLRDRLEAVEA 232 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999974
No 17
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=92.72 E-value=0.12 Score=55.16 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~ 324 (329)
|.+.|+.|.++.+||+||++||.|..++.
T Consensus 220 L~~~M~~as~~l~FE~Aa~~RD~i~~l~~ 248 (621)
T PRK14671 220 LTEEMQRAAAELKFEEAAELKDQIESLKR 248 (621)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999973
No 18
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=92.55 E-value=0.13 Score=54.95 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~ 324 (329)
|.+.|+.|.++.+||+||++||+|+.++.
T Consensus 208 L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~ 236 (624)
T PRK14669 208 LRARMEAAALEMQFELAAKYRDLITTVEE 236 (624)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999874
No 19
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=90.94 E-value=0.25 Score=52.52 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLLKLRK 324 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~~l~~ 324 (329)
|++.|++|.++.+||.||++||.|+.++.
T Consensus 207 L~~~M~~As~~l~FE~Aa~~RD~i~al~~ 235 (581)
T COG0322 207 LEEKMEEASENLDFERAARLRDQIKALEK 235 (581)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999974
No 20
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=44.64 E-value=1.3e+02 Score=23.35 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=34.8
Q ss_pred ChhHHHHHHHHHhCCeEeEEEEEeeeCCEEEEEEEEecCCcceEEEEeCCh
Q 020211 184 DQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRP 234 (329)
Q Consensus 184 lTHDLl~~vle~lg~~v~~V~I~~l~dGvFyA~L~l~~~ge~~~~~IDaRP 234 (329)
++..-+...++..|++|.+|.+++ +|.|-.+.... +|..-.+.+|.+.
T Consensus 29 ~~~~~~~~~l~~~G~~v~~ve~~~--~g~yev~~~~~-dG~~~ev~vD~~t 76 (83)
T PF13670_consen 29 LSIEQAVAKLEAQGYQVREVEFDD--DGCYEVEARDK-DGKKVEVYVDPAT 76 (83)
T ss_pred CCHHHHHHHHHhcCCceEEEEEcC--CCEEEEEEEEC-CCCEEEEEEcCCC
Confidence 457778888999999999998864 77899996654 4544445666543
No 21
>PF12386 Peptidase_C71: Pseudomurein endo-isopeptidase Pei; InterPro: IPR022119 This peptidase has the catalytic triad C-H-D at the C-terminal end, a triad similar to that in thiol proteases and animal transglutaminases. It catalyses the in vitro lysis of M. marburgensis cells under reducing conditions and exhibits characteristics of metal-activated peptidases.
Probab=37.65 E-value=99 Score=27.33 Aligned_cols=44 Identities=25% Similarity=0.494 Sum_probs=35.1
Q ss_pred CCCCChhHHHHHHHHHhCCeEeEEEEEee-eCCEEEEEEEEecCC
Q 020211 180 EDCPDQFQFVKNVVEKLGYEVKMVRITER-VVNTYFAKLYLSKPG 223 (329)
Q Consensus 180 ~~RPlTHDLl~~vle~lg~~v~~V~I~~l-~dGvFyA~L~l~~~g 223 (329)
...-..-+|+.-+++.||+.|.-+.+--. .+|+.|..+.|.-.+
T Consensus 55 iNCtD~~Qlf~~v~~~lGY~Vq~~HVk~rc~~g~wygH~~LRv~~ 99 (142)
T PF12386_consen 55 INCTDACQLFYRVIESLGYDVQFEHVKCRCNSGKWYGHYRLRVKH 99 (142)
T ss_pred CCchhHHHHHHHHHHhcCceEEEEEEEEEecCCceeeEEEEEecc
Confidence 45566789999999999987776666544 699999999998755
No 22
>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases).
Probab=37.54 E-value=23 Score=30.70 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=41.8
Q ss_pred CCChhHHHHHHHHHhCCeEeEEEEEeeeCCEEEEEEEEecCCcceEEEEeCChHHHHHHHHHcCCCeEEeHhhhhhccee
Q 020211 182 CPDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIR 261 (329)
Q Consensus 182 RPlTHDLl~~vle~lg~~v~~V~I~~l~dGvFyA~L~l~~~ge~~~~~IDaRPSDAIaLAlR~~~PIyV~eeVl~~agI~ 261 (329)
+-++-+-+..++..+- ..|.|. ..+.|. =+..+ ..+....+|-.=---||||+..+|||+..+.=+..+|+.
T Consensus 50 ~~l~~~~~~~~l~~l~---~~I~iv--~~~~~~--~~~~~-A~~~~~~~D~~D~p~vALaL~l~~~IWT~Dkdl~~~Gl~ 121 (133)
T PF10130_consen 50 SKLSEEELEEVLNILF---SRIKIV--PEEIYS--ENIEE-AREIIRDRDPDDWPFVALALQLNAPIWTEDKDLFGSGLA 121 (133)
T ss_pred hCCCHHHHHHHHHHHH---hheEEe--cHHHhH--HHHHH-HHHHhcCCCcchHHHHHHHHHcCCCeecCcHHHHhcCcc
Confidence 3455666666666552 233333 344444 11111 111122345555567999999999999999988777754
No 23
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=36.73 E-value=92 Score=29.35 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=40.4
Q ss_pred CCCCCCCChhHHHHHHHHHhC--CeEeEEEEEeeeCCEEEEEEEEecCC
Q 020211 177 GEDEDCPDQFQFVKNVVEKLG--YEVKMVRITERVVNTYFAKLYLSKPG 223 (329)
Q Consensus 177 g~~~~RPlTHDLl~~vle~lg--~~v~~V~I~~l~dGvFyA~L~l~~~g 223 (329)
....++|-..+=|.++.+.|. +...||-.+...+++||..|.+..++
T Consensus 172 ~~~~~kP~~l~emi~iA~~Ls~~f~fvRVDlY~~~~~iyFGElTf~p~~ 220 (239)
T PF14305_consen 172 DEDIPKPKNLEEMIEIAEKLSKGFPFVRVDLYNVDGKIYFGELTFTPGA 220 (239)
T ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEEEEEeCCcEEEEeeecCCCC
Confidence 467899999999999999996 56677777888999999999997654
No 24
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=31.49 E-value=49 Score=25.79 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhcchHHHHHH
Q 020211 296 LVKNMDIAVREERYNDAAKF 315 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~l 315 (329)
..+++++.+...+|++||++
T Consensus 9 ~~~~F~~l~~~g~y~eAA~~ 28 (66)
T PF13838_consen 9 YVQQFNELFSQGQYEEAAKV 28 (66)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 56889999999999999998
No 25
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=30.82 E-value=30 Score=36.50 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=10.4
Q ss_pred HHhhcchHHHHHHHHHHHHHH
Q 020211 303 AVREERYNDAAKFRDKLLKLR 323 (329)
Q Consensus 303 Ai~~E~YE~AA~lRDei~~l~ 323 (329)
||+.|||..|-...|||.+++
T Consensus 219 AVadEDfdlAkdkkdeiealR 239 (666)
T KOG4825|consen 219 AVADEDFDLAKDKKDEIEALR 239 (666)
T ss_pred cccchhhhHHHHHHHHHHHHH
Confidence 444455555555555555444
No 26
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=29.44 E-value=49 Score=29.40 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=28.8
Q ss_pred hhhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhcc
Q 020211 291 TEEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSIH 327 (329)
Q Consensus 291 ~~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~~ 327 (329)
..|+. |+++|..-=..++|-+.|++|-++++++++.+
T Consensus 46 ~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~ 83 (161)
T PF04420_consen 46 RKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELE 83 (161)
T ss_dssp HHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 77777766678899999999999999987654
No 27
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=29.00 E-value=1.5e+02 Score=24.21 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhCCeEeEEEEEeeeCCEEEEEEEEecCCcceEEEEeCChHHHHHHHHHcCCC
Q 020211 185 QFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAP 247 (329)
Q Consensus 185 THDLl~~vle~lg~~v~~V~I~~l~dGvFyA~L~l~~~ge~~~~~IDaRPSDAIaLAlR~~~P 247 (329)
-.+|+.++..++|..... ..-|+-.|+.++|+.-.+.-|+=--+||.+|-..+..
T Consensus 23 ~~~L~~~I~~Rl~~d~~~--------~~~~~L~YlDDEgD~VllT~D~DL~e~v~iar~~g~~ 77 (86)
T cd06409 23 LEELRTLISQRLGDDDFE--------THLYALSYVDDEGDIVLITSDSDLVAAVLVARSAGLK 77 (86)
T ss_pred HHHHHHHHHHHhCCcccc--------CCcccEEEEcCCCCEEEEeccchHHHHHHHHHHcCCC
Confidence 468888999999876543 4567888888888777788899999999999887654
No 28
>PRK11020 hypothetical protein; Provisional
Probab=27.17 E-value=97 Score=26.83 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=31.3
Q ss_pred hhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhcc
Q 020211 292 EEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSIH 327 (329)
Q Consensus 292 ~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~~ 327 (329)
..++ +++.|..|...+|-|.-+++.+||..+.++++
T Consensus 12 drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~ 48 (118)
T PRK11020 12 DRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIA 48 (118)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 4566 88999999999999999999999999987654
No 29
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=24.53 E-value=1.8e+02 Score=24.46 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHHhCCeEeEEEEEeeeCCEEEEEEEEecCCc
Q 020211 183 PDQFQFVKNVVEKLGYEVKMVRITERVVNTYFAKLYLSKPGK 224 (329)
Q Consensus 183 PlTHDLl~~vle~lg~~v~~V~I~~l~dGvFyA~L~l~~~ge 224 (329)
+...+|-..+.+.+|..+..+.+..+.||-.|.++--.-.|+
T Consensus 7 ~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g~ 48 (116)
T PF13793_consen 7 SSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVRGK 48 (116)
T ss_dssp SSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--TTS
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEecccccCC
Confidence 445788889999999999999999999999999985544443
No 30
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=24.33 E-value=2e+02 Score=20.84 Aligned_cols=51 Identities=8% Similarity=0.008 Sum_probs=38.0
Q ss_pred EeEEEEEeeeCCEEEEEEEEecCCcceEEEEeCChHHHHHHHHHcCCCeEEe
Q 020211 200 VKMVRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVS 251 (329)
Q Consensus 200 v~~V~I~~l~dGvFyA~L~l~~~ge~~~~~IDaRPSDAIaLAlR~~~PIyV~ 251 (329)
.....|.++..+...+++.+.-++. ..+...+-+..+-.|+++-|.|+|+.
T Consensus 8 ~l~g~I~~i~~~g~~~~v~l~~~~~-~~l~a~i~~~~~~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGDVNAEVDLLLGGG-TKLTAVITLESVAELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC-CEEEEEecHHHHhhCCCCCCCEEEEE
Confidence 3456777777777788888876543 24666777888889999999998874
No 31
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=22.57 E-value=2.8e+02 Score=24.70 Aligned_cols=48 Identities=15% Similarity=0.249 Sum_probs=38.2
Q ss_pred eEEEEEeeeCCEEE-EEEEEecCCcceEEEEeCChHHHHHHHHHcCCCeEE
Q 020211 201 KMVRITERVVNTYF-AKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYV 250 (329)
Q Consensus 201 ~~V~I~~l~dGvFy-A~L~l~~~ge~~~~~IDaRPSDAIaLAlR~~~PIyV 250 (329)
.+..|.+ .|||+. .++++...|+ +...++.|=+.||.+..+.++|+.|
T Consensus 7 i~~~v~d-~dGv~tdg~~~~~~~g~-~~~~~~~~D~~~~~~L~~~Gi~laI 55 (169)
T TIGR02726 7 IKLVILD-VDGVMTDGRIVINDEGI-ESRNFDIKDGMGVIVLQLCGIDVAI 55 (169)
T ss_pred CeEEEEe-CceeeECCeEEEcCCCc-EEEEEecchHHHHHHHHHCCCEEEE
Confidence 4455565 577776 6788876664 4789999999999999999999988
No 32
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=22.01 E-value=1.2e+02 Score=26.20 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=23.3
Q ss_pred hH-HHHHHHHHHhhcchHHHHHHHHHHHHH
Q 020211 294 FD-LVKNMDIAVREERYNDAAKFRDKLLKL 322 (329)
Q Consensus 294 l~-L~~~L~~Ai~~E~YE~AA~lRDei~~l 322 (329)
++ |.+.=..|-++-+|+.|=+|||+|..+
T Consensus 112 v~~Ll~~R~~aR~~Kdf~~AD~IRd~L~~~ 141 (156)
T cd07963 112 IEALIAQRNQARKAKDWAEADRIRDELAAQ 141 (156)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHC
Confidence 44 555556788889999999999999875
No 33
>PF06312 Neurexophilin: Neurexophilin
Probab=20.75 E-value=1.3e+02 Score=28.50 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=30.6
Q ss_pred EEEEeeeCCEEEEEEEEecCCcceEEEEeCChHHHHHH
Q 020211 203 VRITERVVNTYFAKLYLSKPGKNEIISVDVRPSDAINV 240 (329)
Q Consensus 203 V~I~~l~dGvFyA~L~l~~~ge~~~~~IDaRPSDAIaL 240 (329)
-.|+|..+|+|.|...|.-.|+..+...=+-||+||..
T Consensus 87 G~V~Dh~NGTYtv~F~L~W~G~v~vsV~LVHPSEAV~v 124 (219)
T PF06312_consen 87 GKVTDHGNGTYTVSFPLLWPGQVSVSVSLVHPSEAVSV 124 (219)
T ss_pred EEEEECCCCeEEEEEEeecCceEEEEEEEEcchhheee
Confidence 57789999999999999877754444555789999988
No 34
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=20.73 E-value=1e+02 Score=27.40 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=31.4
Q ss_pred ccCCccceeeccceeccCCCCcEEEEEeecCCcEEEEEEECH
Q 020211 122 TKEPRGDVTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGE 163 (329)
Q Consensus 122 ~~~~~~~v~~~g~g~l~~~~~pvIvLk~e~~g~r~LPI~IG~ 163 (329)
++.+|+-..+.|+|+..++..+-|.+-+ .+....+|+-|-.
T Consensus 88 a~~~RvLFHYnGhGvP~Pt~~GeIw~f~-~~~tqyip~si~d 128 (154)
T PF14538_consen 88 AKDERVLFHYNGHGVPRPTENGEIWVFN-KNYTQYIPLSIYD 128 (154)
T ss_pred CCCceEEEEECCCCCCCCCCCCeEEEEc-CCCCcceEEEHHH
Confidence 3456777778899999999888888875 5667788887643
Done!