Query 020211
Match_columns 329
No_of_seqs 246 out of 809
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:29:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vjl_A Hypothetical protein TM 100.0 2.3E-39 7.9E-44 286.1 18.7 133 129-264 16-155 (164)
2 1e52_A Excinuclease ABC subuni 97.9 7.4E-06 2.5E-10 61.7 3.6 35 291-325 23-58 (63)
3 2d7d_A Uvrabc system protein B 96.1 0.0022 7.7E-08 66.3 3.1 34 292-325 626-660 (661)
4 1c4o_A DNA nucleotide excision 95.7 0.0019 6.4E-08 66.9 0.0 36 291-326 610-646 (664)
5 3pxg_A Negative regulator of g 74.8 2.3 8E-05 41.6 4.2 37 291-327 400-437 (468)
6 1gp8_A Protein (scaffolding pr 62.9 5.5 0.00019 27.2 2.7 33 291-323 7-40 (40)
7 3syn_E ATP-binding protein YLX 59.6 5.8 0.0002 23.6 2.1 19 306-324 3-21 (23)
8 2fzt_A Hypothetical protein TM 30.4 61 0.0021 25.0 4.2 22 296-317 7-28 (79)
9 3v1a_A Computational design, M 28.9 72 0.0025 22.5 4.1 36 291-326 7-43 (48)
10 3hho_A CO-chaperone protein HS 25.2 77 0.0026 27.1 4.5 30 296-325 132-171 (174)
11 3he5_B Synzip2; heterodimeric 25.1 77 0.0026 22.1 3.6 21 306-326 26-47 (52)
12 3pxi_A Negative regulator of g 23.3 62 0.0021 33.2 4.2 35 292-326 401-436 (758)
13 2lf0_A Uncharacterized protein 21.3 65 0.0022 26.9 3.1 36 292-327 17-53 (123)
No 1
>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A
Probab=100.00 E-value=2.3e-39 Score=286.07 Aligned_cols=133 Identities=29% Similarity=0.370 Sum_probs=121.7
Q ss_pred eeeccceeccCCCCcEEEEEeecCCcEEEEEEECHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHhCCeEeEEEEEee
Q 020211 129 VTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITER 208 (329)
Q Consensus 129 v~~~g~g~l~~~~~pvIvLk~e~~g~r~LPI~IG~~EA~aI~~al~~~g~~~~RPlTHDLl~~vle~lg~~v~~V~I~~l 208 (329)
+...|+.+.+.+++|+|||++ ++++|.||||||.+||++|+.++. |.+++||+|||||.++++++|+++.+|+|+++
T Consensus 16 ~~v~gi~ld~~~~~pvvvL~~-~~g~r~LPI~Ig~~EA~aI~~~l~--~~~~~RPlThDLl~~il~~lg~~v~~V~I~~l 92 (164)
T 1vjl_A 16 AWVKTLALDRVSNTPVVILGI-EGTNRVLPIWIGACEGHALALAME--KMEFPRPLTHDLLLSVLESLEARVDKVIIHSL 92 (164)
T ss_dssp EEEEEEEECTTTCCEEEEEEE-TTSSEEEEEECCHHHHHHHHHHHH--TCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEEEEEEcCCCCceEEEEEe-cCCCEEEEEEECHHHHHHHHHHhc--CCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEe
Confidence 338899999999999999997 789999999999999999999997 79999999999999999999999999999999
Q ss_pred eCCEEEEEEEEe------cCC-cceEEEEeCChHHHHHHHHHcCCCeEEeHhhhhhcceeccC
Q 020211 209 VVNTYFAKLYLS------KPG-KNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIGY 264 (329)
Q Consensus 209 ~dGvFyA~L~l~------~~g-e~~~~~IDaRPSDAIaLAlR~~~PIyV~eeVl~~agI~i~~ 264 (329)
+||+|||+|+++ ++| +.+.+++|+||||||+||+|+++||||+++|++++|+++..
T Consensus 93 ~dgtfyA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~PI~V~e~Vl~~a~i~~~~ 155 (164)
T 1vjl_A 93 KDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV 155 (164)
T ss_dssp ETTEEEEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECCH
T ss_pred ECCEEEEEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCCEEEcHHHHhhcCCCCcc
Confidence 999999999999 654 12568999999999999999999999999999999998863
No 2
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=97.89 E-value=7.4e-06 Score=61.73 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=30.9
Q ss_pred hhhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhh
Q 020211 291 TEEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKS 325 (329)
Q Consensus 291 ~~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~ 325 (329)
...+. |++.|.+|+++++||+||++||+|+.|+.+
T Consensus 23 ~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 23 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34455 999999999999999999999999999864
No 3
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.15 E-value=0.0022 Score=66.27 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=25.5
Q ss_pred hhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhh
Q 020211 292 EEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKS 325 (329)
Q Consensus 292 ~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~ 325 (329)
+.+. |+++|++|.++++||+||+|||+|+.|+++
T Consensus 626 ~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~ 660 (661)
T 2d7d_A 626 KVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660 (661)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence 3445 999999999999999999999999999764
No 4
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.66 E-value=0.0019 Score=66.86 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=0.0
Q ss_pred hhhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhc
Q 020211 291 TEEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSI 326 (329)
Q Consensus 291 ~~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~ 326 (329)
.+.++ |+++|++|+++++||+||+|||+|+.|++++
T Consensus 610 ~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~ 646 (664)
T 1c4o_A 610 RERIAELELAMWQAAEALDFERAARLRDEIRALEARL 646 (664)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 44566 8899999999999999999999999998764
No 5
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=74.84 E-value=2.3 Score=41.63 Aligned_cols=37 Identities=30% Similarity=0.544 Sum_probs=30.8
Q ss_pred hhhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhcc
Q 020211 291 TEEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSIH 327 (329)
Q Consensus 291 ~~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~~ 327 (329)
...++ |..++..++..+||++|+.+++++.++++++.
T Consensus 400 ~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~ 437 (468)
T 3pxg_A 400 EQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVE 437 (468)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 34555 77788899999999999999999999987654
No 6
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=62.88 E-value=5.5 Score=27.17 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=28.2
Q ss_pred hhhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 020211 291 TEEFD-LVKNMDIAVREERYNDAAKFRDKLLKLR 323 (329)
Q Consensus 291 ~~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~ 323 (329)
...++ +++++..|-.+.|||.+-.|.-+|++++
T Consensus 7 ~d~I~aiEQqiyvA~seGd~etv~~Le~QL~~lR 40 (40)
T 1gp8_A 7 AANKDAIRKQMDAAASKGDVETYRKLKAKLKGIR 40 (40)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 45566 8899999999999999999998887653
No 7
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=59.63 E-value=5.8 Score=23.63 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=16.1
Q ss_pred hcchHHHHHHHHHHHHHHh
Q 020211 306 EERYNDAAKFRDKLLKLRK 324 (329)
Q Consensus 306 ~E~YE~AA~lRDei~~l~~ 324 (329)
..+|..||.+|.++.+++.
T Consensus 3 mnrydqaatlrakmekrer 21 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKRER 21 (26)
T ss_pred cchHHHHHHHHHHHHHHhh
Confidence 3589999999999988764
No 8
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=30.35 E-value=61 Score=25.03 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhcchHHHHHHHH
Q 020211 296 LVKNMDIAVREERYNDAAKFRD 317 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRD 317 (329)
+.++.+.||+.||||.--.+=+
T Consensus 7 IEk~ID~aIE~edyE~L~~LL~ 28 (79)
T 2fzt_A 7 IERKIDEAIEKEDYETLLSLLN 28 (79)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 6689999999999997555533
No 9
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=28.88 E-value=72 Score=22.50 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=30.1
Q ss_pred hhhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhc
Q 020211 291 TEEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSI 326 (329)
Q Consensus 291 ~~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~ 326 (329)
.+.+. ++..+..|-..-+||+.+.|..-|+.|+.+.
T Consensus 7 ~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 7 AQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 44444 7888899999999999999999999987654
No 10
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=25.17 E-value=77 Score=27.08 Aligned_cols=30 Identities=7% Similarity=0.211 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcchHHHHHH----------HHHHHHHHhh
Q 020211 296 LVKNMDIAVREERYNDAAKF----------RDKLLKLRKS 325 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~l----------RDei~~l~~~ 325 (329)
+.+.|..++..++|+.|+.+ +++|++++.+
T Consensus 132 ~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~~i~~~~~~ 171 (174)
T 3hho_A 132 YLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERVEDQ 171 (174)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999854 5566665543
No 11
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=25.09 E-value=77 Score=22.09 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=14.7
Q ss_pred hcchHH-HHHHHHHHHHHHhhc
Q 020211 306 EERYND-AAKFRDKLLKLRKSI 326 (329)
Q Consensus 306 ~E~YE~-AA~lRDei~~l~~~~ 326 (329)
+.+.|+ -|.+||||.+|+.+.
T Consensus 26 eqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 26 EQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 334443 478999999998754
No 12
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=23.33 E-value=62 Score=33.24 Aligned_cols=35 Identities=31% Similarity=0.572 Sum_probs=29.0
Q ss_pred hhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhc
Q 020211 292 EEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSI 326 (329)
Q Consensus 292 ~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~ 326 (329)
.+++ |+...+.++.+++|+.|+.+++++++++++.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 436 (758)
T 3pxi_A 401 QKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQV 436 (758)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 3445 6777888999999999999999999987654
No 13
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=21.32 E-value=65 Score=26.87 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=31.0
Q ss_pred hhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhcc
Q 020211 292 EEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSIH 327 (329)
Q Consensus 292 ~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~~ 327 (329)
..++ +++.|..|...+|-+.-+++.+|+..|.+++.
T Consensus 17 drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~ 53 (123)
T 2lf0_A 17 DRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIA 53 (123)
T ss_dssp HHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4566 88899999999999999999999999976653
Done!