Query 020211
Match_columns 329
No_of_seqs 246 out of 809
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 13:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020211.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020211hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vjla_ d.257.1.1 (A:) Hypothe 100.0 3E-38 2.2E-42 273.3 19.1 132 129-263 5-143 (151)
2 d1e52a_ a.2.9.1 (A:) C-termina 98.0 1.4E-06 1E-10 62.5 3.2 36 291-326 16-52 (56)
3 d2fzta1 a.46.3.1 (A:1-78) Hypo 37.0 19 0.0014 25.8 4.2 25 296-320 6-30 (78)
4 d2vcha1 c.87.1.10 (A:6-476) Hy 30.7 40 0.0029 28.4 6.1 75 215-321 353-443 (471)
5 d1fpoa2 a.23.1.1 (A:77-171) HS 26.9 41 0.003 24.1 4.8 31 296-326 52-92 (95)
6 d2p06a1 a.204.1.3 (A:1-84) Hyp 22.6 32 0.0024 24.2 3.2 21 298-321 49-69 (84)
7 d1x68a1 g.39.1.3 (A:8-36) Four 20.6 9 0.00066 22.9 -0.2 11 9-19 4-14 (29)
8 d1qvra2 c.37.1.20 (A:149-535) 19.4 35 0.0026 30.7 3.6 25 292-316 320-345 (387)
9 d1o12a1 b.92.1.5 (A:1-43,A:332 13.3 86 0.0063 22.1 3.6 23 199-221 2-24 (76)
10 d1x4la1 g.39.1.3 (A:8-36) Four 11.4 20 0.0015 21.3 -0.3 11 9-19 4-14 (29)
No 1
>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=3e-38 Score=273.31 Aligned_cols=132 Identities=29% Similarity=0.366 Sum_probs=121.8
Q ss_pred eeeccceeccCCCCcEEEEEeecCCcEEEEEEECHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHHhCCeEeEEEEEee
Q 020211 129 VTSIGPEFLRRFQSPTIFLKISCDGDFLLPIIVGEFAVDKLLYALLDDGEDEDCPDQFQFVKNVVEKLGYEVKMVRITER 208 (329)
Q Consensus 129 v~~~g~g~l~~~~~pvIvLk~e~~g~r~LPI~IG~~EA~aI~~al~~~g~~~~RPlTHDLl~~vle~lg~~v~~V~I~~l 208 (329)
+...|+++.+..++|+|+|++ +++++.||||||..||++|+.++. |.+++||+|||||.++++++|+++.+|+|+++
T Consensus 5 ~~v~~i~~~~~~~~pvvlL~~-~~~~~~LPI~Ig~~EA~~I~~~l~--~~~~~RP~thDLl~~~l~~lg~~v~~V~I~~~ 81 (151)
T d1vjla_ 5 AWVKTLALDRVSNTPVVILGI-EGTNRVLPIWIGACEGHALALAME--KMEFPRPLTHDLLLSVLESLEARVDKVIIHSL 81 (151)
T ss_dssp EEEEEEEECTTTCCEEEEEEE-TTSSEEEEEECCHHHHHHHHHHHH--TCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEEEEEEecCCCCcEEEEEE-CCCCeEEEEEEChHHHHHHHHHHc--CCCCCCCCHHHHHHHHHHHhCCEEEEEEEEEE
Confidence 457788999989999999997 789999999999999999999997 79999999999999999999999999999999
Q ss_pred eCCEEEEEEEEecCC-------cceEEEEeCChHHHHHHHHHcCCCeEEeHhhhhhcceecc
Q 020211 209 VVNTYFAKLYLSKPG-------KNEIISVDVRPSDAINVANRCEAPIYVSKHIVLKDAIRIG 263 (329)
Q Consensus 209 ~dGvFyA~L~l~~~g-------e~~~~~IDaRPSDAIaLAlR~~~PIyV~eeVl~~agI~i~ 263 (329)
++|+|||+|++.++. +++.+.+||||||||+||+|+++||||+++|++++|+.+.
T Consensus 82 ~dg~fyA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlr~~~PI~v~~~Vl~~a~i~~~ 143 (151)
T d1vjla_ 82 KDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELE 143 (151)
T ss_dssp ETTEEEEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECC
T ss_pred ecCCeEEEEEEecCcccccccccCceeEeccChhHHHHHHHhhCCCEEEcHHHHHhcCCCCC
Confidence 999999999997532 1256899999999999999999999999999999998765
No 2
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=98.00 E-value=1.4e-06 Score=62.50 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=32.1
Q ss_pred hhhhH-HHHHHHHHHhhcchHHHHHHHHHHHHHHhhc
Q 020211 291 TEEFD-LVKNMDIAVREERYNDAAKFRDKLLKLRKSI 326 (329)
Q Consensus 291 ~~el~-L~~~L~~Ai~~E~YE~AA~lRDei~~l~~~~ 326 (329)
.+.++ |+++|..|.++.+||+||++||+|+.+++..
T Consensus 16 ~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l 52 (56)
T d1e52a_ 16 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 45566 9999999999999999999999999998753
No 3
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}
Probab=37.00 E-value=19 Score=25.80 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHH
Q 020211 296 LVKNMDIAVREERYNDAAKFRDKLL 320 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~lRDei~ 320 (329)
+.+....||+.||||.--.+=|+=+
T Consensus 6 iErkIDeaIE~EDyE~L~~LL~kRe 30 (78)
T d2fzta1 6 IERKIDEAIEKEDYETLLSLLNKRK 30 (78)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6689999999999997665544433
No 4
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=30.70 E-value=40 Score=28.36 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=45.6
Q ss_pred EEEEEecCCcceEEEEeCChHHHHHHHHHcCCCeEEeHhhh----------hh--cceeccCCCCccCCCCcccccccCC
Q 020211 215 AKLYLSKPGKNEIISVDVRPSDAINVANRCEAPIYVSKHIV----------LK--DAIRIGYGMGRAHGAKATYDVSLDS 282 (329)
Q Consensus 215 A~L~l~~~ge~~~~~IDaRPSDAIaLAlR~~~PIyV~eeVl----------~~--agI~i~~~~~~~~~~~~~~~~~~d~ 282 (329)
+++++..+| .-.+.=|+++|+|+-+-.-.. +. .|+.+...
T Consensus 353 ~~~fVtHGG-----------~gS~~EAl~~GvP~v~~P~~~DQ~~nA~rv~e~lG~Gv~l~~~----------------- 404 (471)
T d2vcha1 353 TGGFLTHCG-----------WNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAG----------------- 404 (471)
T ss_dssp EEEEEECCC-----------HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCC-----------------
T ss_pred CCEEEecCC-----------ccHHHHHHHcCCCEEEcccccccHHHHHHHHHHheeEEEEecC-----------------
Confidence 567777766 346788999999998854332 22 22222110
Q ss_pred CCCCCCCchhhhHHHHHHHHHHhhcc---h-HHHHHHHHHHHH
Q 020211 283 AAEGPDSVTEEFDLVKNMDIAVREER---Y-NDAAKFRDKLLK 321 (329)
Q Consensus 283 ~~~~p~~~~~el~L~~~L~~Ai~~E~---Y-E~AA~lRDei~~ 321 (329)
+.+....++ |.+++.+.+.+|+ | +.|++|++++++
T Consensus 405 --~~~~~t~~~--l~~ai~~vl~~~~~~~~r~ra~~l~e~~~~ 443 (471)
T d2vcha1 405 --DDGLVRREE--VARVVKGLMEGEEGKGVRNKMKELKEAACR 443 (471)
T ss_dssp --TTSCCCHHH--HHHHHHHHHTSTHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcCCHHH--HHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 001111333 6688888888876 5 568888888775
No 5
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}
Probab=26.86 E-value=41 Score=24.10 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhcchHHHHHH----------HHHHHHHHhhc
Q 020211 296 LVKNMDIAVREERYNDAAKF----------RDKLLKLRKSI 326 (329)
Q Consensus 296 L~~~L~~Ai~~E~YE~AA~l----------RDei~~l~~~~ 326 (329)
+...+..+....+|+.|+.. .++|+++++++
T Consensus 52 ~~~~l~~~~~~~d~~~A~~~~~kLkF~~kl~~ei~~~e~~L 92 (95)
T d1fpoa2 52 RHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQLEEKL 92 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 56677778888888888754 45555555544
No 6
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=22.64 E-value=32 Score=24.24 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=16.6
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHH
Q 020211 298 KNMDIAVREERYNDAAKFRDKLLK 321 (329)
Q Consensus 298 ~~L~~Ai~~E~YE~AA~lRDei~~ 321 (329)
..|.+||+.|++| .+|||+-.
T Consensus 49 delreavekedwe---nlrdelld 69 (84)
T d2p06a1 49 DELREAVEKEDWE---NLRDELLD 69 (84)
T ss_dssp HHHHHHHHTTCHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHH
Confidence 3567899999998 48998754
No 7
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.56 E-value=9 Score=22.91 Aligned_cols=11 Identities=36% Similarity=1.032 Sum_probs=9.3
Q ss_pred eeEEecCccce
Q 020211 9 CVRTVSGFHGT 19 (329)
Q Consensus 9 ~~~~~~~~~~~ 19 (329)
|..|++|+|++
T Consensus 4 C~kPItg~gG~ 14 (29)
T d1x68a1 4 CSKPISGLTGA 14 (29)
T ss_dssp TCCCCCTTTTC
T ss_pred ccccccccCCc
Confidence 67899999975
No 8
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=19.37 E-value=35 Score=30.66 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=20.1
Q ss_pred hhhH-HHHHHHHHHhhcchHHHHHHH
Q 020211 292 EEFD-LVKNMDIAVREERYNDAAKFR 316 (329)
Q Consensus 292 ~el~-L~~~L~~Ai~~E~YE~AA~lR 316 (329)
.+++ ++..++.|..+.||++|+.++
T Consensus 320 ~~Le~lr~~le~A~r~gd~e~AaeL~ 345 (387)
T d1qvra2 320 HRLDEVRREIELAERQYDLNRAAELR 345 (387)
T ss_dssp HHHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHh
Confidence 3455 677778888899999999887
No 9
>d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]}
Probab=13.33 E-value=86 Score=22.10 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=21.1
Q ss_pred eEeEEEEEeeeCCEEEEEEEEec
Q 020211 199 EVKMVRITERVVNTYFAKLYLSK 221 (329)
Q Consensus 199 ~v~~V~I~~l~dGvFyA~L~l~~ 221 (329)
.+++|.|.+-.||.|...+-++.
T Consensus 2 ~iE~VLIVDPidGEyTGdvEf~e 24 (76)
T d1o12a1 2 IVEKVLIVDPIDGEFTGDVEIEE 24 (76)
T ss_dssp EEEEEEEEETTTEEEEEEEEEET
T ss_pred ceeeEEEEcCCCCcEeeeEEecC
Confidence 47899999999999999999974
No 10
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.40 E-value=20 Score=21.30 Aligned_cols=11 Identities=45% Similarity=1.014 Sum_probs=8.8
Q ss_pred eeEEecCccce
Q 020211 9 CVRTVSGFHGT 19 (329)
Q Consensus 9 ~~~~~~~~~~~ 19 (329)
|-.|++|+|++
T Consensus 4 C~kPItg~gg~ 14 (29)
T d1x4la1 4 CTNPISGLGGT 14 (29)
T ss_dssp TTBCCCCSSSC
T ss_pred cCCcccccCCc
Confidence 66789999865
Done!