Query 020212
Match_columns 329
No_of_seqs 158 out of 1665
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00343 triose or hexose phos 100.0 2.6E-35 5.7E-40 274.7 32.4 275 40-328 46-332 (350)
2 KOG1444 Nucleotide-sugar trans 100.0 3.7E-35 8E-40 258.9 24.4 275 41-329 10-285 (314)
3 KOG1441 Glucose-6-phosphate/ph 100.0 1.4E-35 3E-40 267.3 13.8 273 42-329 16-292 (316)
4 TIGR00817 tpt Tpt phosphate/ph 100.0 2.2E-33 4.8E-38 257.4 26.9 270 43-328 2-277 (302)
5 KOG1442 GDP-fucose transporter 100.0 1.8E-31 4E-36 228.7 8.1 270 42-322 27-306 (347)
6 COG5070 VRG4 Nucleotide-sugar 100.0 1.1E-28 2.3E-33 205.9 14.3 267 42-327 5-279 (309)
7 PF08449 UAA: UAA transporter 99.9 5.7E-25 1.2E-29 201.7 27.2 252 60-328 17-281 (303)
8 KOG1443 Predicted integral mem 99.9 6.9E-25 1.5E-29 191.3 17.7 272 45-328 18-299 (349)
9 PLN00411 nodulin MtN21 family 99.9 8.4E-22 1.8E-26 183.5 28.5 267 43-328 13-312 (358)
10 TIGR00950 2A78 Carboxylate/Ami 99.9 7E-22 1.5E-26 177.2 26.5 239 60-327 6-247 (260)
11 PRK11272 putative DMT superfam 99.9 2.1E-21 4.7E-26 177.2 28.5 251 45-327 14-268 (292)
12 PRK15430 putative chlorampheni 99.9 2.9E-21 6.4E-26 176.6 26.5 262 42-327 7-268 (296)
13 PRK11689 aromatic amino acid e 99.9 8.3E-21 1.8E-25 173.5 27.6 247 44-327 9-270 (295)
14 PRK10532 threonine and homoser 99.9 1.8E-20 3.9E-25 171.1 29.7 250 42-327 11-264 (293)
15 PRK11453 O-acetylserine/cystei 99.9 5.9E-20 1.3E-24 168.2 29.4 255 44-327 9-270 (299)
16 TIGR00688 rarD rarD protein. T 99.9 9.2E-19 2E-23 156.8 26.9 246 45-318 8-255 (256)
17 KOG1580 UDP-galactose transpor 99.8 3.5E-20 7.6E-25 156.3 10.8 261 48-328 22-297 (337)
18 PF06027 DUF914: Eukaryotic pr 99.8 1.4E-17 3E-22 152.5 26.8 251 59-327 29-288 (334)
19 TIGR03340 phn_DUF6 phosphonate 99.8 4.5E-17 9.8E-22 147.9 22.8 250 54-327 12-266 (281)
20 KOG1581 UDP-galactose transpor 99.8 6.3E-16 1.4E-20 135.6 25.7 265 47-328 13-297 (327)
21 KOG1582 UDP-galactose transpor 99.7 7.2E-17 1.6E-21 139.0 16.5 270 40-326 40-314 (367)
22 COG0697 RhaT Permeases of the 99.7 7.5E-15 1.6E-19 133.0 30.3 255 45-327 9-270 (292)
23 PF04142 Nuc_sug_transp: Nucle 99.7 5.7E-15 1.2E-19 130.7 21.2 204 117-326 13-235 (244)
24 COG5006 rhtA Threonine/homoser 99.7 1.8E-14 3.8E-19 123.4 22.6 233 61-328 30-266 (292)
25 TIGR00776 RhaT RhaT L-rhamnose 99.7 4.7E-14 1E-18 128.5 25.1 245 45-328 7-268 (290)
26 KOG4510 Permease of the drug/m 99.7 1.1E-16 2.5E-21 137.6 6.9 251 45-323 41-305 (346)
27 KOG2765 Predicted membrane pro 99.6 5.5E-15 1.2E-19 133.0 13.5 206 119-327 157-373 (416)
28 PF03151 TPT: Triose-phosphate 99.6 1.6E-14 3.6E-19 118.9 12.6 126 202-328 1-137 (153)
29 COG2962 RarD Predicted permeas 99.6 4.4E-12 9.6E-17 111.5 25.0 259 42-327 6-266 (293)
30 KOG1583 UDP-N-acetylglucosamin 99.5 5.1E-14 1.1E-18 121.9 7.5 234 74-327 33-297 (330)
31 KOG3912 Predicted integral mem 99.5 8E-12 1.7E-16 108.6 18.3 202 123-325 88-315 (372)
32 KOG2234 Predicted UDP-galactos 99.4 1.6E-10 3.5E-15 104.5 26.2 272 43-325 15-303 (345)
33 PF00892 EamA: EamA-like trans 99.0 2.3E-09 5E-14 84.5 9.4 117 59-191 7-124 (126)
34 PF13536 EmrE: Multidrug resis 99.0 2.7E-09 5.9E-14 83.3 7.7 108 79-197 2-110 (113)
35 KOG4314 Predicted carbohydrate 98.9 3.1E-09 6.8E-14 88.1 7.7 173 121-302 53-235 (290)
36 TIGR00803 nst UDP-galactose tr 98.9 1.9E-08 4.2E-13 88.0 11.5 173 145-327 2-207 (222)
37 COG2510 Predicted membrane pro 98.9 2.7E-08 5.8E-13 77.0 10.3 121 57-192 17-138 (140)
38 KOG2766 Predicted membrane pro 98.8 3.5E-09 7.5E-14 91.2 4.3 241 58-327 33-282 (336)
39 COG2510 Predicted membrane pro 98.7 1.2E-07 2.6E-12 73.4 10.1 117 203-326 5-121 (140)
40 TIGR00950 2A78 Carboxylate/Ami 98.7 1.2E-06 2.5E-11 78.4 16.2 133 42-189 127-260 (260)
41 PF06800 Sugar_transport: Suga 98.5 1.1E-05 2.4E-10 71.7 17.1 191 119-322 43-246 (269)
42 PF00892 EamA: EamA-like trans 98.4 7.5E-07 1.6E-11 70.0 7.7 108 211-327 1-109 (126)
43 PRK15430 putative chlorampheni 98.3 2.1E-05 4.5E-10 72.0 14.8 126 196-327 3-128 (296)
44 TIGR00688 rarD rarD protein. T 98.3 2.6E-05 5.6E-10 69.7 14.2 123 201-327 2-125 (256)
45 PRK15051 4-amino-4-deoxy-L-ara 98.2 9.1E-06 2E-10 63.0 8.4 64 129-192 45-108 (111)
46 PLN00411 nodulin MtN21 family 98.2 8.3E-05 1.8E-09 69.8 15.4 122 60-193 206-328 (358)
47 PRK11272 putative DMT superfam 98.1 7.2E-05 1.6E-09 68.3 14.7 134 44-193 151-285 (292)
48 PRK10532 threonine and homoser 98.1 0.00014 3E-09 66.5 15.5 131 43-191 148-279 (293)
49 PF05653 Mg_trans_NIPA: Magnes 98.1 4.8E-05 1E-09 69.5 12.2 194 124-321 52-264 (300)
50 PF03151 TPT: Triose-phosphate 98.1 0.00016 3.5E-09 59.1 13.7 144 46-192 3-152 (153)
51 TIGR03340 phn_DUF6 phosphonate 98.0 0.0001 2.2E-09 66.8 13.1 116 203-327 3-118 (281)
52 PRK11689 aromatic amino acid e 98.0 0.00018 3.9E-09 65.8 14.8 75 117-191 211-285 (295)
53 PRK11453 O-acetylserine/cystei 97.9 0.00076 1.6E-08 61.7 15.9 77 117-193 210-287 (299)
54 TIGR00817 tpt Tpt phosphate/ph 97.7 0.00046 1E-08 63.2 12.0 145 43-192 145-292 (302)
55 PRK13499 rhamnose-proton sympo 97.6 0.02 4.4E-07 53.1 21.5 265 42-321 6-313 (345)
56 PRK02971 4-amino-4-deoxy-L-ara 97.6 0.00037 8.1E-09 55.4 8.1 69 125-193 51-122 (129)
57 PTZ00343 triose or hexose phos 97.5 0.0035 7.6E-08 58.8 14.0 146 42-191 193-346 (350)
58 PRK10452 multidrug efflux syst 97.4 0.00065 1.4E-08 53.2 7.2 68 125-192 34-102 (120)
59 TIGR00776 RhaT RhaT L-rhamnose 97.4 0.0041 8.8E-08 56.7 13.6 127 42-191 151-286 (290)
60 COG2962 RarD Predicted permeas 97.4 0.0026 5.6E-08 56.7 11.3 124 198-328 4-128 (293)
61 COG0697 RhaT Permeases of the 97.3 0.011 2.4E-07 53.1 15.7 76 117-192 210-286 (292)
62 PF08449 UAA: UAA transporter 97.3 0.0068 1.5E-07 55.6 14.2 140 44-191 155-295 (303)
63 KOG2922 Uncharacterized conser 97.3 0.0016 3.5E-08 58.7 9.5 192 124-321 66-278 (335)
64 PRK09541 emrE multidrug efflux 97.2 0.0019 4E-08 49.9 7.5 67 126-192 35-102 (110)
65 PRK11431 multidrug efflux syst 97.1 0.0021 4.7E-08 49.1 7.3 67 125-191 33-100 (105)
66 PRK10650 multidrug efflux syst 97.1 0.0022 4.7E-08 49.4 7.2 68 124-191 38-106 (109)
67 COG2076 EmrE Membrane transpor 97.1 0.0023 4.9E-08 48.6 6.9 69 124-192 33-102 (106)
68 PF06800 Sugar_transport: Suga 96.7 0.043 9.4E-07 49.0 12.7 67 124-190 198-268 (269)
69 PF00893 Multi_Drug_Res: Small 96.6 0.0089 1.9E-07 44.7 6.6 57 128-184 36-93 (93)
70 PF13536 EmrE: Multidrug resis 96.4 0.032 7E-07 43.1 9.1 85 238-327 4-89 (113)
71 PF10639 UPF0546: Uncharacteri 96.1 0.018 3.9E-07 44.4 6.0 71 120-191 41-112 (113)
72 KOG4510 Permease of the drug/m 96.1 0.0092 2E-07 52.6 4.8 73 118-190 250-322 (346)
73 COG4975 GlcU Putative glucose 96.0 0.00046 9.9E-09 59.8 -3.3 192 117-321 55-259 (288)
74 PF06027 DUF914: Eukaryotic pr 96.0 0.25 5.4E-06 45.9 14.1 57 137-193 249-305 (334)
75 COG5006 rhtA Threonine/homoser 95.6 0.32 6.9E-06 42.8 12.0 130 43-189 148-278 (292)
76 PF04657 DUF606: Protein of un 95.3 0.45 9.7E-06 38.3 11.4 107 202-315 2-108 (138)
77 KOG1581 UDP-galactose transpor 94.1 1.3 2.7E-05 40.2 12.1 141 41-190 170-310 (327)
78 PRK13499 rhamnose-proton sympo 93.6 2.3 5.1E-05 39.6 13.6 69 125-194 264-342 (345)
79 PRK02971 4-amino-4-deoxy-L-ara 93.1 1.8 3.9E-05 34.3 10.5 101 201-327 2-105 (129)
80 TIGR00803 nst UDP-galactose tr 93.1 1.1 2.3E-05 39.0 10.2 65 126-190 157-221 (222)
81 PRK15051 4-amino-4-deoxy-L-ara 92.7 1.3 2.7E-05 34.2 8.9 39 289-328 55-93 (111)
82 KOG2234 Predicted UDP-galactos 91.4 3.4 7.4E-05 38.2 11.4 124 203-327 17-147 (345)
83 PF04657 DUF606: Protein of un 91.0 7.1 0.00015 31.3 13.8 125 50-190 8-138 (138)
84 KOG1441 Glucose-6-phosphate/ph 89.7 1.1 2.4E-05 41.2 6.8 141 41-192 161-306 (316)
85 PF04142 Nuc_sug_transp: Nucle 89.4 1.1 2.5E-05 39.6 6.5 57 271-328 17-73 (244)
86 KOG1444 Nucleotide-sugar trans 88.7 3.8 8.3E-05 37.4 9.3 143 41-191 155-298 (314)
87 COG5070 VRG4 Nucleotide-sugar 85.9 5.4 0.00012 34.7 8.1 139 43-190 155-293 (309)
88 PF05653 Mg_trans_NIPA: Magnes 81.8 6 0.00013 36.3 7.4 101 199-327 5-105 (300)
89 KOG2765 Predicted membrane pro 80.8 12 0.00027 35.0 8.8 67 130-196 327-393 (416)
90 PF00893 Multi_Drug_Res: Small 80.7 5 0.00011 29.7 5.4 39 289-328 47-86 (93)
91 PF06379 RhaT: L-rhamnose-prot 80.0 13 0.00028 34.4 8.8 167 43-222 7-194 (344)
92 PRK09541 emrE multidrug efflux 79.0 6 0.00013 30.4 5.4 38 289-327 48-86 (110)
93 PRK10650 multidrug efflux syst 78.3 28 0.00061 26.7 9.8 37 290-327 54-91 (109)
94 COG2076 EmrE Membrane transpor 77.2 9.9 0.00021 29.0 6.0 37 290-327 49-86 (106)
95 COG3238 Uncharacterized protei 77.0 38 0.00083 27.6 10.2 105 200-310 4-108 (150)
96 KOG1580 UDP-galactose transpor 77.0 2.8 6.1E-05 36.6 3.4 71 120-190 240-310 (337)
97 PRK11431 multidrug efflux syst 74.1 13 0.00029 28.2 6.1 37 290-327 48-85 (105)
98 PRK10452 multidrug efflux syst 71.7 12 0.00025 29.4 5.4 38 289-327 48-86 (120)
99 COG4975 GlcU Putative glucose 68.9 2.1 4.6E-05 37.7 0.8 68 123-190 211-282 (288)
100 KOG4831 Unnamed protein [Funct 65.2 12 0.00025 28.4 4.0 69 122-191 54-123 (125)
101 KOG1582 UDP-galactose transpor 59.1 59 0.0013 29.4 7.8 83 117-199 256-338 (367)
102 COG3238 Uncharacterized protei 59.1 98 0.0021 25.2 11.4 133 45-191 7-144 (150)
103 PF15215 FDC-SP: Follicular de 50.5 6.1 0.00013 26.5 0.3 18 16-33 3-20 (67)
104 PF05297 Herpes_LMP1: Herpesvi 46.0 6.8 0.00015 35.2 0.0 97 145-242 47-147 (381)
105 PF04018 DUF368: Domain of unk 41.7 1.7E+02 0.0036 26.2 8.1 101 119-219 52-158 (257)
106 PF07330 DUF1467: Protein of u 40.5 96 0.0021 22.6 5.3 23 10-32 21-43 (85)
107 PF04342 DUF486: Protein of un 36.8 62 0.0013 24.6 3.8 60 132-191 46-106 (108)
108 PF09930 DUF2162: Predicted tr 31.5 3.5E+02 0.0077 23.6 11.2 68 121-188 102-172 (224)
109 KOG4314 Predicted carbohydrate 31.5 62 0.0013 27.7 3.5 40 285-325 67-106 (290)
110 KOG1583 UDP-N-acetylglucosamin 29.6 1.6E+02 0.0034 26.8 5.8 66 125-190 238-311 (330)
111 TIGR02865 spore_II_E stage II 28.0 7.3E+02 0.016 26.1 12.5 42 150-191 13-54 (764)
112 PF03729 DUF308: Short repeat 27.9 1.9E+02 0.0041 19.3 5.8 40 179-218 2-41 (72)
113 COG3169 Uncharacterized protei 24.3 1.1E+02 0.0024 22.9 3.3 30 162-191 84-113 (116)
114 PLN02776 prenyltransferase 22.4 6.5E+02 0.014 23.6 14.9 33 291-325 118-150 (341)
115 PF10754 DUF2569: Protein of u 20.8 4.5E+02 0.0097 21.1 6.9 26 199-224 119-144 (149)
116 TIGR02230 ATPase_gene1 F0F1-AT 20.1 1.7E+02 0.0037 22.1 3.7 36 156-191 53-88 (100)
No 1
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=2.6e-35 Score=274.68 Aligned_cols=275 Identities=17% Similarity=0.163 Sum_probs=227.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHH
Q 020212 40 MTRRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLK 119 (329)
Q Consensus 40 ~~~~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (329)
.+.+..+.++.|+++|+..++.||++++.. |+|++++++|++++++++.++...+..+.|+ ....++
T Consensus 46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~~~--~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~ 112 (350)
T PTZ00343 46 FKWKLALLFLTWYALNVLYVVDNKLALNML--PLPWTISSLQLFVGWLFALLYWATGFRKIPR-----------IKSLKL 112 (350)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----------CCCHHH
Confidence 456778999999999999999999999964 7899999999999988776665544322111 001245
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCcccc
Q 020212 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFD 199 (329)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~ 199 (329)
++++++|.|+++.......+.|++++++++++++|++.|+++++++++++|||++++++.+++++++|+.++..+|.+++
T Consensus 113 ~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~ 192 (350)
T PTZ00343 113 FLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFT 192 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhH
Confidence 88999999999887777889999999999999999999999999999999999999999999999999999888888899
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCC-----CCChhhHHHHHHHHHHHHHHHHHHHhcc--hhhhhc-----CCCCcc
Q 020212 200 FFGYAVVFLANITTAIYLATIARIGKSS-----GLNSFGLMWCNGVICGPLLLLWTFLRGD--LETTIN-----FPYLLS 267 (329)
Q Consensus 200 ~~G~~~~l~s~~~~A~~~v~~k~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~-----~~~~~~ 267 (329)
..|++++++|++++|+|+++.|+..++. +.++.++..|+.+.+.++++|+....+. +...+. ...+..
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 9999999999999999999999988753 3567777777888999888887664432 111111 111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 268 PGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
...+..++.+++..+..|.+.|.+++++||.++++.+++||++++++|+++||| ++++.+
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge-~lt~~~ 332 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQT-QVTLLG 332 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCC-CCchHh
Confidence 233456677888999999999999999999999999999999999999999997 998765
No 2
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-35 Score=258.91 Aligned_cols=275 Identities=33% Similarity=0.557 Sum_probs=253.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHH
Q 020212 41 TRRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKT 120 (329)
Q Consensus 41 ~~~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (329)
+.+....++.|+.+|+.++++||++++.|+||...++...|...+.+.+..+.+.|.+++|+ .++++
T Consensus 10 ~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~-------------l~~~~ 76 (314)
T KOG1444|consen 10 QSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRP-------------LDLRT 76 (314)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCC-------------cChHH
Confidence 45668999999999999999999999999888877777799999999999999998887653 56789
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCcccch
Q 020212 121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDF 200 (329)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~ 200 (329)
.|+++|.++++.++++++..+++|+|++.++++|+.+|+++++.+..++|.+++...+.++..+.+|...+...|.+++.
T Consensus 77 ~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~ 156 (314)
T KOG1444|consen 77 AKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNL 156 (314)
T ss_pred HHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhh-hcCCCCcchHHHHHHHHHHH
Q 020212 201 FGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETT-INFPYLLSPGFLVVLCFSCI 279 (329)
Q Consensus 201 ~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~l~~~~~ 279 (329)
.|+.|++.+.++.+.+.++.|+..+..+.+.+++++|+++++.+.++...+++||+... .+.+.+.+..++..+.++|+
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV 236 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence 89999999999999999999999988889999999999999999999999999998722 24455777888999999999
Q ss_pred HHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccCC
Q 020212 280 LAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVSG 329 (329)
Q Consensus 280 ~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~~ 329 (329)
++++.+++.+++.+.+||++.+++| .+....+.++.+++|+.|++|.|.
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~ 285 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNV 285 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhh
Confidence 9999999999999999999999999 888888888888888899999863
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=267.31 Aligned_cols=273 Identities=26% Similarity=0.414 Sum_probs=236.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHH
Q 020212 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL 121 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (329)
.+....+..|++++++..+.||++++.++|++|++++..|+.++.+.....+.++..+.++ ..++..+
T Consensus 16 ~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~------------~~~~~~~ 83 (316)
T KOG1441|consen 16 LRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSK------------ISSKLPL 83 (316)
T ss_pred HHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCc------------cccccch
Confidence 4557889999999999999999999989999999999999999999888888877544221 1133567
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCcccchh
Q 020212 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFF 201 (329)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~ 201 (329)
+.++|+|++++++.+++|.|++|+++|++|++|+++|+++.++++++.+|+++++.+++++++..||.+++.+|.++|..
T Consensus 84 ~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~ 163 (316)
T KOG1441|consen 84 RTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLF 163 (316)
T ss_pred HHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh--cCCCCChhhHHHHHHHHHHHHHH-HHHHHh-cchhhhhcCCCCcchHHHHHHHHH
Q 020212 202 GYAVVFLANITTAIYLATIARIG--KSSGLNSFGLMWCNGVICGPLLL-LWTFLR-GDLETTINFPYLLSPGFLVVLCFS 277 (329)
Q Consensus 202 G~~~~l~s~~~~A~~~v~~k~~~--~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~~ 277 (329)
|++.++++.+..+.++++.|+++ ++++.|+.++++|+.+.+...++ |+.... ++.. .......++..++..++.+
T Consensus 164 G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s 242 (316)
T KOG1441|consen 164 GFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVTFLILLLNS 242 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchhhHHHHHHH
Confidence 99999999999999999999999 46689999999999999999988 776443 3222 1111112333344444444
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccCC
Q 020212 278 CILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVSG 329 (329)
Q Consensus 278 ~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~~ 329 (329)
++++.+|.+.|++++++||+|++|.+++|++..+..||++|+| |+|+.|.
T Consensus 243 -v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~-pvt~~n~ 292 (316)
T KOG1441|consen 243 -VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGN-PVTFLNA 292 (316)
T ss_pred -HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecC-CCchhhH
Confidence 9999999999999999999999999999999999999999998 9999873
No 4
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=2.2e-33 Score=257.40 Aligned_cols=270 Identities=18% Similarity=0.192 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHH
Q 020212 43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
+..+.++.|+++|++.++.||+++++ +++|.++++.|+.++.+.+.+....+..+ +.+.++++++
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 66 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWSSGLPK-------------RLKISSALLK 66 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHhCCCC-------------CCCCCHHHHH
Confidence 34678999999999999999999985 58899999999999887776664332211 1124578999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCcccchhh
Q 020212 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFG 202 (329)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G 202 (329)
++++.|++++.++.++|.+++|+++++++++++++|+++++++++++|||++++++.+++++++|+.+...+|.+++..|
T Consensus 67 ~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G 146 (302)
T TIGR00817 67 LLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAG 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988776777778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhh-cCCC----CcchHHHHHHHHH
Q 020212 203 YAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTI-NFPY----LLSPGFLVVLCFS 277 (329)
Q Consensus 203 ~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~----~~~~~~~~~l~~~ 277 (329)
+++++++++++|+|.++.||..++.++|+.+++.|++..+.+.++|.....++..... +... ......+...+..
T Consensus 147 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (302)
T TIGR00817 147 FLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVA 226 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHH
Confidence 9999999999999999999987755679999999999999988888876555422111 1000 0111222223333
Q ss_pred HH-HHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 278 CI-LAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 278 ~~-~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
+. +....|...+.+++++||+++++.+++||+.++++|++++|| ++++.+
T Consensus 227 ~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge-~lt~~~ 277 (302)
T TIGR00817 227 AMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGT-KISPQQ 277 (302)
T ss_pred HHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCC-CCchhH
Confidence 33 344455666789999999999999999999999999999998 888764
No 5
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-31 Score=228.68 Aligned_cols=270 Identities=24% Similarity=0.305 Sum_probs=241.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHHHHHHHHHHc-----cccccccCCCCccCCCCCc
Q 020212 42 RRGANAAISYMACAVLLVMFNKAALSS--YNFPCANVITLLQMISSCSFLYFLRRW-----KIINFTMGDSLMTSDSSST 114 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~il~~--~~f~~p~~l~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 114 (329)
++.......|.++++++.+.||++++. ...+.|.+++++|.+++..++..+.+. +..++|+.
T Consensus 27 ~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~----------- 95 (347)
T KOG1442|consen 27 KQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSL----------- 95 (347)
T ss_pred hchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcc-----------
Confidence 345677788999999999999999985 245679999999999999888877553 12233321
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheecc
Q 020212 115 FVPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR 194 (329)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~ 194 (329)
..+.+..++++|+++.+.+++.++|.+++|+++++|++-|+++.+|+.++.++++|||.+.....++++++.|..+....
T Consensus 96 ~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdq 175 (347)
T KOG1442|consen 96 QLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQ 175 (347)
T ss_pred cccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheecccc
Confidence 25668889999999999999999999999999999999999999999999999999999999999999999999887655
Q ss_pred C---cccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHH
Q 020212 195 D---LSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFL 271 (329)
Q Consensus 195 ~---~~~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 271 (329)
| ..+++.|.++++.++++.|+..++.||.....+.--+.+++|++..+.+..+|...+.||+...+.++..++..||
T Consensus 176 E~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw 255 (347)
T KOG1442|consen 176 EGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFW 255 (347)
T ss_pred ccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHH
Confidence 5 4678999999999999999999999999887777789999999999999999999999999988888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCc
Q 020212 272 VVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGL 322 (329)
Q Consensus 272 ~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~ 322 (329)
..+.++|++||..++.+.+-+|.+||+|+.+.+..|.+.+.++++.+++|.
T Consensus 256 ~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ 306 (347)
T KOG1442|consen 256 ILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSET 306 (347)
T ss_pred HHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999983
No 6
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.96 E-value=1.1e-28 Score=205.87 Aligned_cols=267 Identities=22% Similarity=0.352 Sum_probs=237.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHH
Q 020212 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL 121 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (329)
..+...++.|+..|+.+++.|||+++..||+....+.+.|..++.+.+.++...|..++| .++.
T Consensus 5 ~s~~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR----------------~t~a 68 (309)
T COG5070 5 VSELTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR----------------LTKA 68 (309)
T ss_pred cccchHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee----------------hhhh
Confidence 355788999999999999999999999999999999999999998888888887766643 2567
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCc-----
Q 020212 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL----- 196 (329)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~----- 196 (329)
|.++|.+++...+++.+..++||.+++.|++.|+++.+.++..+..++|.|.+-.+..+.++.++.-+.+.++|.
T Consensus 69 K~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~ 148 (309)
T COG5070 69 KKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAF 148 (309)
T ss_pred hhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999999988888887
Q ss_pred ---ccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHH
Q 020212 197 ---SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVV 273 (329)
Q Consensus 197 ---~~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 273 (329)
..| .|++|.....+..|.+...+|+..+-.+...++.++|+++++.++++.+++..+||.+. +............
T Consensus 149 ~~~~lN-~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~-n~annl~~d~l~a 226 (309)
T COG5070 149 KAQILN-PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPG-NLANNLSVDSLMA 226 (309)
T ss_pred HhcccC-CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcc-hhhcCCChHHHHH
Confidence 345 59999999999999999999998877778889999999999999999999988998542 2222223344567
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 274 LCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 274 l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
+..+|++++...++.-|+++.+|.+++|++|.+++....+.|.++||| |.++.
T Consensus 227 m~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffda-p~nf~ 279 (309)
T COG5070 227 MFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDA-PVNFL 279 (309)
T ss_pred HHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCC-chhHH
Confidence 889999999999999999999999999999999999999999999997 98865
No 7
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.94 E-value=5.7e-25 Score=201.69 Aligned_cols=252 Identities=22% Similarity=0.326 Sum_probs=209.8
Q ss_pred HHHHHHhh-cCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHHHHHHHHHHHHHHHh
Q 020212 60 MFNKAALS-SYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVS 138 (329)
Q Consensus 60 ~~nK~il~-~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (329)
+..+.+.. .++.++|.++++.|+.++.+.........+.+ + .+++.++++++.++++.++..++
T Consensus 17 ~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF08449_consen 17 ILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-K--------------SRKIPLKKYAILSFLFFLASVLS 81 (303)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-C--------------CCcChHHHHHHHHHHHHHHHHHH
Confidence 34455554 44334799999999999988777665543311 0 11234677899999999999999
Q ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCcc----cc------hhhHHHHHH
Q 020212 139 VESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLS----FD------FFGYAVVFL 208 (329)
Q Consensus 139 ~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~----~~------~~G~~~~l~ 208 (329)
|.|++|+|.|.++++|++.|+++++++++++|||++++++++++++++|+.+...+|.+ .+ ..|+++.++
T Consensus 82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~ 161 (303)
T PF08449_consen 82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLL 161 (303)
T ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987554421 11 239999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHH--hcchhhhhcCCCCcchHHHHHHHHHHHHHHHHHH
Q 020212 209 ANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFL--RGDLETTINFPYLLSPGFLVVLCFSCILAFFLNY 286 (329)
Q Consensus 209 s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (329)
+.++.|.+.++.||+.++++.++.++++|+++++.+...+.... +||+.+..++.. .++..+..++..++.+...+.
T Consensus 162 sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~p~~~~~l~~~s~~~~~g~~ 240 (303)
T PF08449_consen 162 SLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS-AHPSVLLYLLLFSLTGALGQF 240 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH-HhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999889999999999999999998888777 778765544332 345567888888888988888
Q ss_pred HHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 287 SIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 287 ~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
..+..+++.||++.+++..+|++.++++|+++||+ ++++.+
T Consensus 241 ~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~-~~~~~~ 281 (303)
T PF08449_consen 241 FIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGH-PLSPLQ 281 (303)
T ss_pred HHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCC-cCChHH
Confidence 88899999999999999999999999999999997 998764
No 8
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.93 E-value=6.9e-25 Score=191.35 Aligned_cols=272 Identities=19% Similarity=0.248 Sum_probs=226.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccH-HHHHH
Q 020212 45 ANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPL-KTLMH 123 (329)
Q Consensus 45 ~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 123 (329)
+..++.|+++|+++.+++|+.-.+ |++|++++.+|+++-.++.....+..+.+.++ .+...+| ..+|+
T Consensus 18 L~lVl~yY~~Si~Ltf~~~~~~~~--f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r---------~r~~~sw~~~Lr~ 86 (349)
T KOG1443|consen 18 LALVLLYYFLSIGLTFYFKWLTKN--FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPR---------ARVVLSWRDYLRR 86 (349)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcC--cCCchHHHHHHHHHHHHHHHHHHHHHhccCCc---------cccCCcHHHHHHH
Confidence 556699999999999999998765 57789999999999888877776654433221 1223566 46678
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCcccchhhH
Q 020212 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFGY 203 (329)
Q Consensus 124 ~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~ 203 (329)
+.|.++.-++.+.++|++++|++++.|++.|+.+++|+.+++.++.-||++|.-.+.++++.+|+++.++.+.++|..|+
T Consensus 87 ~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf 166 (349)
T KOG1443|consen 87 LAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGF 166 (349)
T ss_pred hhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC---CChhhHHHHHHHHHHHHHHHHHHHhcchh-----hhhcCCCCcc-hHHHHHH
Q 020212 204 AVVFLANITTAIYLATIARIGKSSG---LNSFGLMWCNGVICGPLLLLWTFLRGDLE-----TTINFPYLLS-PGFLVVL 274 (329)
Q Consensus 204 ~~~l~s~~~~A~~~v~~k~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~~~~~~~~~~-~~~~~~l 274 (329)
++.++++++.++...+.|.++++.+ .+|.+..++..+.....++|..+..+... +.+...+..+ ......+
T Consensus 167 ~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i 246 (349)
T KOG1443|consen 167 FLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLI 246 (349)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHH
Confidence 9999999999999999999998653 58999999999988888877765544322 1222221111 2334566
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 275 CFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
.+.|..++...++.+..+.++|..+.++++..|.+.+.+++..+.+| .++..|
T Consensus 247 ~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d-~ls~lN 299 (349)
T KOG1443|consen 247 SLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKD-QLSLLN 299 (349)
T ss_pred HHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhc-chhhhH
Confidence 77888999999999999999999999999999999999999999987 777543
No 9
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.91 E-value=8.4e-22 Score=183.54 Aligned_cols=267 Identities=12% Similarity=0.070 Sum_probs=190.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHH
Q 020212 43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
+..++.+.-=++..++..+.|..++. |.+ |..+.++|+.++.+++.++...++.+.+ +++.+++++.
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~-----------~~~~~~~~~~ 79 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSK-GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRS-----------LPPLSVSILS 79 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cCcchHHHHH
Confidence 33444444456667777788999864 665 6779999999998887766543321100 1113467778
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHH------hCcccCcchhhhhhHhhhhhhheec-cC
Q 020212 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFL------AGQKYTPPVVGSVGLIILGAFVAGA-RD 195 (329)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~------~~e~~~~~~~~~l~l~~~Gv~l~~~-~~ 195 (329)
++...|++..+...+.+.+++|++++.+.++.+++|+++.+++.++ +|||.+++++.++++.++|+.+... ++
T Consensus 80 ~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g 159 (358)
T PLN00411 80 KIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHG 159 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccC
Confidence 8888887665566689999999999999999999999999999999 6999999999999999999976421 11
Q ss_pred c-----------------------ccc-hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHHHHHHHHH
Q 020212 196 L-----------------------SFD-FFGYAVVFLANITTAIYLATIARIGKSSGLNS-FGLMWCNGVICGPLLLLWT 250 (329)
Q Consensus 196 ~-----------------------~~~-~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~ 250 (329)
. +.+ ..|.++.+++++++|+|++..||..++ +++ ...++++...+...+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~ 237 (358)
T PLN00411 160 PRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE--YPAAFTVSFLYTVCVSIVTSMIG 237 (358)
T ss_pred cccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHhHHHHHHHHHHHHHHHHHH
Confidence 1 112 449999999999999999999998774 444 4556666666555544443
Q ss_pred HHhcch-hhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 251 FLRGDL-ETTINFPYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 251 ~~~g~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
...++. ...+. ...+... ..+++.++...+.....++++++.+|.+.++..+++|++++++|++++|| ++++.+
T Consensus 238 l~~~~~~~~~~~--~~~~~~~-~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE-~lt~~~ 312 (358)
T PLN00411 238 LVVEKNNPSVWI--IHFDITL-ITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLND-SLYLGC 312 (358)
T ss_pred HHHccCCcccce--eccchHH-HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCC-CCcHHH
Confidence 332211 11111 1122222 23445555444434455789999999999999999999999999999998 888753
No 10
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.91 E-value=7e-22 Score=177.17 Aligned_cols=239 Identities=17% Similarity=0.148 Sum_probs=184.6
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHHHHHH-HHHHHHHHHh
Q 020212 60 MFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLA-VAYLLYMVVS 138 (329)
Q Consensus 60 ~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~ 138 (329)
...|+.+++. .++..+.+.|++.+.+++.+..+.+ + ++++++..+..+ +...++..+.
T Consensus 6 ~~~k~~~~~~--~~~~~~~~~r~~~~~l~l~~~~~~~--~-----------------~~~~~~~~~~~~~~~~~l~~~~~ 64 (260)
T TIGR00950 6 VVIGQYLEGQ--VPLYFAVFRRLIFALLLLLPLLRRR--P-----------------PLKRLLRLLLLGALQIGVFYVLY 64 (260)
T ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHhc--c-----------------CHhHHHHHHHHHHHHHHHHHHHH
Confidence 3579988753 4588899999998877766654432 1 123445566666 4567888899
Q ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhee-ccCcccchhhHHHHHHHHHHHHHHH
Q 020212 139 VESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG-ARDLSFDFFGYAVVFLANITTAIYL 217 (329)
Q Consensus 139 ~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~-~~~~~~~~~G~~~~l~s~~~~A~~~ 217 (329)
+.|++|++++...++.++.|+++.+++.+++|||++++++.+++++++|+.+.. .++.+.+..|++++++++++++.+.
T Consensus 65 ~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~ 144 (260)
T TIGR00950 65 FVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGT 144 (260)
T ss_pred HHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998753 3334556789999999999999999
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHHHHHHHH-HHHHHhhccc
Q 020212 218 ATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNY-SIFLNTTLNS 296 (329)
Q Consensus 218 v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~i~~~s 296 (329)
++.|+..++.+.++.....+....+.+++.+.....++.. ..+...|..++..++++....+ ..++++++.+
T Consensus 145 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 217 (260)
T TIGR00950 145 VLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-------QALSLQWGALLYLGLIGTALAYFLWNKGLTLVD 217 (260)
T ss_pred HHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-------CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999987644333445554667777777777665443321 1123345666777776655444 4477999999
Q ss_pred hhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 297 AVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 297 a~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
+.+.++..+++|+++++++++++|| ++++.
T Consensus 218 ~~~~s~~~~~~pv~~~ll~~~~~~E-~~~~~ 247 (260)
T TIGR00950 218 PSAASILALAEPLVALLLGLLILGE-TLSLP 247 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCC-CCCHH
Confidence 9999999999999999999999998 87754
No 11
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.90 E-value=2.1e-21 Score=177.16 Aligned_cols=251 Identities=12% Similarity=0.075 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHH
Q 020212 45 ANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHT 124 (329)
Q Consensus 45 ~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (329)
+...++|+...+ ..|..+++. .|..+.++|+.++.+++.+....++.+ ..+++++++.
T Consensus 14 ~~~~~iWg~~~~----~~K~~~~~~---~p~~~~~~R~~~a~l~ll~~~~~~~~~---------------~~~~~~~~~~ 71 (292)
T PRK11272 14 FALYIIWGSTYL----VIRIGVESW---PPLMMAGVRFLIAGILLLAFLLLRGHP---------------LPTLRQWLNA 71 (292)
T ss_pred HHHHHHHhhHHH----HHHHHhccC---CHHHHHHHHHHHHHHHHHHHHHHhCCC---------------CCcHHHHHHH
Confidence 556666766655 569888754 588999999999988876665433211 0234667777
Q ss_pred HHHHHHH-HHHHHHhhhhh-cccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheec-cCcccchh
Q 020212 125 LPLAVAY-LLYMVVSVESV-RGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA-RDLSFDFF 201 (329)
Q Consensus 125 ~~~~l~~-~~~~~~~~~al-~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~-~~~~~~~~ 201 (329)
...|.+. .....+.+.+. ++++++.+.++.++.|+++.+++.+ +|||++++++.+++++++|+.+... ++.+.+..
T Consensus 72 ~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~ 150 (292)
T PRK11272 72 ALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPW 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchH
Confidence 7778654 55667778888 9999999999999999999999985 6999999999999999999987543 33455668
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHHH
Q 020212 202 GYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILA 281 (329)
Q Consensus 202 G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (329)
|.++++++++++|.+.+..||..+ + ++...+.++...+...+.+.....++.. ....+...|..+++.++++
T Consensus 151 G~l~~l~a~~~~a~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~l~i~~ 222 (292)
T PRK11272 151 GAILILIASASWAFGSVWSSRLPL--P-VGMMAGAAEMLAAGVVLLIASLLSGERL-----TALPTLSGFLALGYLAVFG 222 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--C-cchHHHHHHHHHHHHHHHHHHHHcCCcc-----cccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999753 2 3455667888787777766654433211 1112334466777777776
Q ss_pred HHHHHHH-HHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 282 FFLNYSI-FLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 282 ~~~~~~~-~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
....+.. ++++++.++.+.++..+++|+.++++|++++|| ++++.
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E-~~t~~ 268 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGE-TLSPI 268 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CCcHH
Confidence 6555544 678999999999999999999999999999998 77764
No 12
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.90 E-value=2.9e-21 Score=176.58 Aligned_cols=262 Identities=12% Similarity=-0.024 Sum_probs=173.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHH
Q 020212 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL 121 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (329)
.++.+..+...++........|.. .+ ++ |..+.++|+.++.+++.+....++.+ ++. +++..+++++
T Consensus 7 ~~g~~~~l~a~~~wg~~~~~~k~~-~~--~~-~~~~~~~R~~~a~~~l~~~~~~~~~~-~~~--------~~~~~~~~~~ 73 (296)
T PRK15430 7 RQGVLLALAAYFIWGIAPAYFKLI-YY--VP-ADEILTHRVIWSFFFMVVLMSICRQW-SYL--------KTLIQTPQKI 73 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-cC--CC-HHHHHHHHHHHHHHHHHHHHHHHccH-HHH--------HHHHcCHHHH
Confidence 355444444444444444556875 43 34 88999999999887655544322110 000 0000123443
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCcccchh
Q 020212 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFF 201 (329)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~ 201 (329)
......+.....+..+.++++++++++.++++.++.|+++.+++++++|||++++++.+++++++|+.+....+.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~--- 150 (296)
T PRK15430 74 FMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL--- 150 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc---
Confidence 33333345677788999999999999999999999999999999999999999999999999999998754332222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHHH
Q 020212 202 GYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILA 281 (329)
Q Consensus 202 G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (329)
.+++++++++||.|.+..||..++...+......|..+++.+...+.. .... .... ......+..+...++.+
T Consensus 151 -~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~-~~~~~~~~~~~~~g~~t 223 (296)
T PRK15430 151 -PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA--DSST---SHMG-QNPMSLNLLLIAAGIVT 223 (296)
T ss_pred -cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc--cCCc---cccc-CCcHHHHHHHHHHHHHH
Confidence 257888999999999998887542222333334444545444322111 1110 0000 11111234444555555
Q ss_pred HHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 282 FFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 282 ~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
....++.++++++.+|...++..+++|++++++|++++|| ++++.
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E-~~~~~ 268 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGE-KPGAD 268 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHH
Confidence 5666677889999999999999999999999999999998 77764
No 13
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.89 E-value=8.3e-21 Score=173.52 Aligned_cols=247 Identities=13% Similarity=0.118 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHH
Q 020212 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH 123 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (329)
.++.+++|+...+ ..|..++++ .|..+.++|+.++.+++.++.. +.+.+ +++++.
T Consensus 9 ~l~a~~~Wg~~~~----~~k~~~~~~---~P~~~~~~R~~~a~l~l~~~~~--~~~~~----------------~~~~~~ 63 (295)
T PRK11689 9 GLIAILLWSTMVG----LIRGVSESL---GPVGGAAMIYSVSGLLLLLTVG--FPRLR----------------QFPKRY 63 (295)
T ss_pred HHHHHHHHHHHHH----HHHHHHccC---ChHHHHHHHHHHHHHHHHHHcc--ccccc----------------cccHHH
Confidence 4566777776655 569988865 4889999999998877665431 11100 011223
Q ss_pred HHHHHHHHHHHHHHhhhhhc----ccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCc---
Q 020212 124 TLPLAVAYLLYMVVSVESVR----GVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL--- 196 (329)
Q Consensus 124 ~~~~~l~~~~~~~~~~~al~----~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~--- 196 (329)
.+..++.+.....+.+.+++ +++...+.++.++.|+++.+++++++|||++++++.+++++++|+.+...++.
T Consensus 64 ~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~ 143 (295)
T PRK11689 64 LLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLS 143 (295)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccch
Confidence 33334445566666666665 45778889999999999999999999999999999999999999987644332
Q ss_pred --------ccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcch
Q 020212 197 --------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSP 268 (329)
Q Consensus 197 --------~~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 268 (329)
+.+..|+++++++++++|.|+++.||..+ +.++....+ ..+...+.+.....++.. . ..++
T Consensus 144 ~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~--~~~~~~~~~---~~~~~~l~~~~~~~~~~~----~--~~~~ 212 (295)
T PRK11689 144 LAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYAR--GKNGITLFF---ILTALALWIKYFLSPQPA----M--VFSL 212 (295)
T ss_pred hhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhHHH---HHHHHHHHHHHHHhcCcc----c--cCCH
Confidence 12346999999999999999999999865 456655422 222233333222332211 1 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 269 GFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
..|..+++.++.+.......++++++.+|.+.++..+++|++++++|++++|| ++++.
T Consensus 213 ~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE-~~~~~ 270 (295)
T PRK11689 213 PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLST-PLSFS 270 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCC-CCcHH
Confidence 34555666666555555566789999999999999999999999999999998 87764
No 14
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.89 E-value=1.8e-20 Score=171.14 Aligned_cols=250 Identities=16% Similarity=0.085 Sum_probs=184.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHH
Q 020212 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL 121 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (329)
.++..+.+.-.++........|+.+++. + |..+.++|+.++.+++.++.+.++.+ .++|++
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~--~-~~~~~~~R~~~a~l~l~~~~~~~~~~----------------~~~~~~ 71 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPLV--G-APGVTALRLALGTLILIAIFKPWRLR----------------FAKEQR 71 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHc--C-HHHHHHHHHHHHHHHHHHHHhHHhcc----------------CCHHHH
Confidence 4555555555555556666899999864 4 77899999999988776654321111 234677
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheec--cC-ccc
Q 020212 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA--RD-LSF 198 (329)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~--~~-~~~ 198 (329)
+..+..|++......+.+++++|+|++.+.++.++.|+++.+++ +|++.+ ...+.++++|+.+... .+ .+.
T Consensus 72 ~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~ 145 (293)
T PRK10532 72 LPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHV 145 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccC
Confidence 77888888777788889999999999999999999999998876 355544 4556777899876432 12 234
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHH
Q 020212 199 DFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSC 278 (329)
Q Consensus 199 ~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 278 (329)
+..|.++++++++++|.|.+..||..+ +.++... .+...++...+.+.....+. ....++..|..++..+
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~--~~~~~~~-~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~l~lg 215 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGA--EHGPATV-AIGSLIAALIFVPIGALQAG-------EALWHWSILPLGLAVA 215 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhc--cCCchHH-HHHHHHHHHHHHHHHHHccC-------cccCCHHHHHHHHHHH
Confidence 567999999999999999999999865 3466665 45556666666665543321 0112333455566778
Q ss_pred HHHHHHHHHH-HHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 279 ILAFFLNYSI-FLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 279 ~~~~~~~~~~-~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
+++....+.. ++++++.+|.++++..+++|++++++|++++|| ++++.
T Consensus 216 v~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE-~~~~~ 264 (293)
T PRK10532 216 ILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGE-TLTLI 264 (293)
T ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCC-CCcHH
Confidence 8777777755 789999999999999999999999999999998 77764
No 15
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.88 E-value=5.9e-20 Score=168.22 Aligned_cols=255 Identities=13% Similarity=0.091 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHH
Q 020212 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH 123 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (329)
.++.+++|+...+ ..|..+++. .|..+.++|+.++.+.+....+. .+ .++ +.
T Consensus 9 ~l~~~~~Wg~~~~----~~k~~~~~~---~p~~~~~~R~~~a~~~l~~~~~~--~~----------------~~~---~~ 60 (299)
T PRK11453 9 ALLVVVVWGLNFV----VIKVGLHNM---PPLMLAGLRFMLVAFPAIFFVAR--PK----------------VPL---NL 60 (299)
T ss_pred HHHHHHHHhhhHH----HHHHHHhcC---CHHHHHHHHHHHHHHHHHHHhcC--CC----------------Cch---HH
Confidence 4566777776666 459888754 48999999999876654433321 11 111 23
Q ss_pred HHHHHHHH-HHHHHHhhhhhcc-cchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccC---ccc
Q 020212 124 TLPLAVAY-LLYMVVSVESVRG-VNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD---LSF 198 (329)
Q Consensus 124 ~~~~~l~~-~~~~~~~~~al~~-~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~---~~~ 198 (329)
....+++. .....+.+.+++| .+.+.+.++.++.|+++.+++++++|||++++++.+++++++|+.+...++ .+.
T Consensus 61 ~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~ 140 (299)
T PRK11453 61 LLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHV 140 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcch
Confidence 44445543 3344466788888 689999999999999999999999999999999999999999998754332 233
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHH
Q 020212 199 DFFGYAVVFLANITTAIYLATIARIGKSSG-LNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFS 277 (329)
Q Consensus 199 ~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 277 (329)
+..|+++++.+++++|.|.++.||..++.+ ........++...+...........++...........++..|..+++.
T Consensus 141 ~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 141 AMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence 457999999999999999999999765321 1223344455555444333333222221110000012345567888888
Q ss_pred HHHHHHHHHHH-HHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 278 CILAFFLNYSI-FLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 278 ~~~~~~~~~~~-~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
++++....+.. ++++++.+|.+.++..+++|+.++++|++++|| ++++.
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE-~~~~~ 270 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDE-RLTGL 270 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCC-CccHH
Confidence 88888777766 578999999999999999999999999999998 77764
No 16
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.85 E-value=9.2e-19 Score=156.81 Aligned_cols=246 Identities=9% Similarity=-0.010 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHc-cccccccCCCCccCCCCCccccHH-HHH
Q 020212 45 ANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLK-TLM 122 (329)
Q Consensus 45 ~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 122 (329)
++++++|+..++ ..|+ ..+. .|..+.++|++++.+.+.+.... ++.+..+ ++ .+..+++ .+.
T Consensus 8 i~a~~~wg~~~~----~~k~-~~~~---~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~ 71 (256)
T TIGR00688 8 LLASFLFGYMYY----YSKL-LKPL---PATDILGHRMIWSFPFMLLSVTLFRQWAALI-ER-------LKRIQKRPLIL 71 (256)
T ss_pred HHHHHHHHHHHH----HHHH-hccC---CHHHHHHHHHHHHHHHHHHHHHHHcchHHHH-HH-------HhCcccchHHH
Confidence 445555555544 5688 4433 48899999999988776554322 2111000 00 0001122 233
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCcccchhh
Q 020212 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFFG 202 (329)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G 202 (329)
.....+++...+..+.+.++++++++.++++.+++|+++++++.+++|||++++++.+++++++|+.+...++.+.+
T Consensus 72 ~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~--- 148 (256)
T TIGR00688 72 SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP--- 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch---
Confidence 45556677888899999999999999999999999999999999999999999999999999999987543322211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHHHH
Q 020212 203 YAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAF 282 (329)
Q Consensus 203 ~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (329)
++++++++++|.|.+..||..++ +..+.... .....+...+... .+++... ........|..+...|+++.
T Consensus 149 -~~~l~aa~~~a~~~i~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~l~~~g~~t~ 219 (256)
T TIGR00688 149 -WEALVLAFSFTAYGLIRKALKNT---DLAGFCLE-TLSLMPVAIYYLL-QTDFATV---QQTNPFPIWLLLVLAGLITG 219 (256)
T ss_pred -HHHHHHHHHHHHHHHHHhhcCCC---CcchHHHH-HHHHHHHHHHHHH-HhccCcc---cccCchhHHHHHHHHHHHHH
Confidence 46889999999999999987542 22222221 1222222221111 1111110 00111123566667777766
Q ss_pred HHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHh
Q 020212 283 FLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWIL 318 (329)
Q Consensus 283 ~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~ 318 (329)
....+.+.++++.+|.+.++..+++|+.++++|+++
T Consensus 220 i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 220 TPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 666666889999999999999999999999999764
No 17
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.83 E-value=3.5e-20 Score=156.26 Aligned_cols=261 Identities=18% Similarity=0.168 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC--------CCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHH
Q 020212 48 AISYMACAVLLVMFNKAALSSY--------NFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLK 119 (329)
Q Consensus 48 ~~~~~~~s~~~~~~nK~il~~~--------~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (329)
.++|+.-++.. -|..-.+| .|++.+.+.++|+.+..+...++...++.. +.|..
T Consensus 22 fvCYF~yGI~Q---EkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~---------------~~D~t 83 (337)
T KOG1580|consen 22 FVCYFVYGIQQ---EKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKT---------------EIDNT 83 (337)
T ss_pred hheehhhhhHH---HHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccc---------------cccCC
Confidence 34555556644 23333334 378888999999999988877665543211 11222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccC----
Q 020212 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD---- 195 (329)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~---- 195 (329)
.-+....+++-|.+..+.+|.|+||+|.++..+-|++-|+-++++...+.+++++|+++++++.+++|+.+..+.+
T Consensus 84 ~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~ 163 (337)
T KOG1580|consen 84 PTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVG 163 (337)
T ss_pred cchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccC
Confidence 2356778889999999999999999999999999999999999999999999999999999999999998854432
Q ss_pred ---cccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHH
Q 020212 196 ---LSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLV 272 (329)
Q Consensus 196 ---~~~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 272 (329)
.+....|-++.++|....++.....+|+...++.++-.+++|+++.+.+.+-.-..++||..+...+. ..++..|+
T Consensus 164 g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~-~RhP~~~~ 242 (337)
T KOG1580|consen 164 GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFV-QRHPYVFW 242 (337)
T ss_pred CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHH-HhccHHHH
Confidence 22335788999999999999999999998877788899999999999888877777889975543222 23455678
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 273 VLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 273 ~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
-+.+.++.+...+++.|..+...+|++-|++..-++.++++.|+++|++ |++..+
T Consensus 243 ~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~n-pls~rQ 297 (337)
T KOG1580|consen 243 DLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNN-PLSGRQ 297 (337)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcC-cCcHHH
Confidence 8888899999999999999999999999999999999999999999997 988654
No 18
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.82 E-value=1.4e-17 Score=152.50 Aligned_cols=251 Identities=12% Similarity=0.092 Sum_probs=181.2
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHHHHHHHHHHHHHHHh
Q 020212 59 VMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVS 138 (329)
Q Consensus 59 ~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (329)
...+.++-++ |++.|.+-+++-++.-.++.......++.+ + + .....++++++.+.++++-..++++.
T Consensus 29 ~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~-~--~--------~~~~~~~~~w~y~lla~~Dv~aN~~~ 96 (334)
T PF06027_consen 29 GTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGF-K--K--------WLKVLKRPWWKYFLLALLDVEANYLV 96 (334)
T ss_pred HHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhcccc-c--c--------chhhcchhHHHHHHHHHHHHHHHHHH
Confidence 3345555555 778888777666654444333222222111 0 0 00122356677888899999999999
Q ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCc---------ccchhhHHHHHHH
Q 020212 139 VESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL---------SFDFFGYAVVFLA 209 (329)
Q Consensus 139 ~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~---------~~~~~G~~~~l~s 209 (329)
+.|++|++++.+|++.+++.+++++++++++|+|+++.++.++++.++|+.+....|. +....|+++++++
T Consensus 97 v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~ 176 (334)
T PF06027_consen 97 VLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLG 176 (334)
T ss_pred HHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987654432 2237899999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 020212 210 NITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSIF 289 (329)
Q Consensus 210 ~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 289 (329)
+++||+++++.|+..++ .+..+.+....+++.++..+..... |.....+.+ +++..+..++.-+++-+......-
T Consensus 177 a~lya~~nV~~E~~v~~--~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~~--w~~~~~~~~v~~~~~lf~~y~l~p 251 (334)
T PF06027_consen 177 AILYAVSNVLEEKLVKK--APRVEFLGMLGLFGFIISGIQLAIL-ERSGIESIH--WTSQVIGLLVGYALCLFLFYSLVP 251 (334)
T ss_pred HHHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhccC--CChhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999884 5788888888888888776654432 332222222 233333444433333333333334
Q ss_pred HHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 290 LNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 290 ~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
..++..||+.+.+--....+.++++++++||+ +++|+
T Consensus 252 ~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~-~~~~l 288 (334)
T PF06027_consen 252 IVLRMSSATFFNLSLLTSDFYALIIDIFFFGY-KFSWL 288 (334)
T ss_pred HHHHhCccceeehHHHHhhHHHHHHHHHhcCc-cccHH
Confidence 57899999988888888899999999999997 88874
No 19
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.78 E-value=4.5e-17 Score=147.86 Aligned_cols=250 Identities=15% Similarity=0.116 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHHHHHHHHHHH
Q 020212 54 CAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLL 133 (329)
Q Consensus 54 ~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (329)
+....+..+|...++. ++ ...++...+.+.+.+....+..+ ++ .+..+++.+......+.....
T Consensus 12 ~~a~~~~~~k~~~~~~---~~--~~~~~~~~~~~~l~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~ 75 (281)
T TIGR03340 12 MHAGWNLMAKSHADKE---PD--FLWWALLAHSVLLTPYGLWYLAQ-VG----------WSRLPATFWLLLAISAVANMV 75 (281)
T ss_pred HHHHHHHHHhhcCCch---hH--HHHHHHHHHHHHHHHHHHHhccc-CC----------CCCcchhhHHHHHHHHHHHHH
Confidence 3334455677655532 23 34666655555554444322111 00 000222333334444456777
Q ss_pred HHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccC-cccchhhHHHHHHHHHH
Q 020212 134 YMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD-LSFDFFGYAVVFLANIT 212 (329)
Q Consensus 134 ~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-~~~~~~G~~~~l~s~~~ 212 (329)
...+.+.++++.+++..+.+.++.|+++.+++++++|||++++++.++.+++.|+.+...++ .+.+..|..++++++++
T Consensus 76 ~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~ 155 (281)
T TIGR03340 76 YFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALG 155 (281)
T ss_pred HHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999998754332 23456788999999999
Q ss_pred HHHHHHHHHHhhcCCCCChhh----HHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 020212 213 TAIYLATIARIGKSSGLNSFG----LMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSI 288 (329)
Q Consensus 213 ~A~~~v~~k~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 288 (329)
++.|.+..|+..++ .++.. .+.+..........+.....++.. .. ..+...+..+...++.+.......
T Consensus 156 ~a~~~i~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~s~l~~~l~ 228 (281)
T TIGR03340 156 TAIYSLSDKAAALG--VPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF---PYARQILPSATLGGLMIGGAYALV 228 (281)
T ss_pred HHHhhhhccccccc--hhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998876432 23221 222222222111111111112110 00 111222333444444444445556
Q ss_pred HHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 289 FLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 289 ~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
++++++.++.+.+...+++|++++++|++++|| +.++.
T Consensus 229 ~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE-~~~~~ 266 (281)
T TIGR03340 229 LWAMTRLPVATVVALRNTSIVFAVVLGIWFLNE-RWYLT 266 (281)
T ss_pred HHHHhhCCceEEEeecccHHHHHHHHHHHHhCC-CccHH
Confidence 789999999999999999999999999999998 77754
No 20
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.76 E-value=6.3e-16 Score=135.63 Aligned_cols=265 Identities=17% Similarity=0.183 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh------cC-----CCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCcc
Q 020212 47 AAISYMACAVLLVMFNKAALS------SY-----NFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTF 115 (329)
Q Consensus 47 ~~~~~~~~s~~~~~~nK~il~------~~-----~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (329)
+-+++++.++-.+++.--+++ .| +|..+.++.+.|-+.+.++-+.+..+.+.+.+
T Consensus 13 ~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~-------------- 78 (327)
T KOG1581|consen 13 ILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELS-------------- 78 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCC--------------
Confidence 334455555544444444443 12 57789999999999888887666554332211
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheecc-
Q 020212 116 VPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR- 194 (329)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~- 194 (329)
..+.+.+....++...++..+++.|++|++-+...+.|++--+-++++..++.|+|++..+++...++.+|+.+....
T Consensus 79 -~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~ 157 (327)
T KOG1581|consen 79 -GVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFP 157 (327)
T ss_pred -CCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEec
Confidence 113356677778888888999999999999999999999999999999999999999999999999999999774322
Q ss_pred --Cc------ccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCc
Q 020212 195 --DL------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLL 266 (329)
Q Consensus 195 --~~------~~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 266 (329)
|. ..+++|+.+...+.++.++.+...+++.++.+.++++++++.++++.+......+..|.+.+...+- ..
T Consensus 158 ~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~-~~ 236 (327)
T KOG1581|consen 158 NSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFI-KE 236 (327)
T ss_pred CCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHH-Hc
Confidence 21 2358899999999999999999999999999999999999999999888877766666665544432 23
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 267 SPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
++.++.-+.+.+.++.+.+...+.-+++.++++.+.+...|++++++++.+.||+ |+++.+
T Consensus 237 hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h-~~s~~q 297 (327)
T KOG1581|consen 237 HPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGH-PLSSEQ 297 (327)
T ss_pred ChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCC-ccchhh
Confidence 4667788888899999999999999999999999999999999999999999997 988765
No 21
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.75 E-value=7.2e-17 Score=139.01 Aligned_cols=270 Identities=16% Similarity=0.124 Sum_probs=211.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccH
Q 020212 40 MTRRGANAAISYMACAVLLVMFNKAALSSYNFP-CANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPL 118 (329)
Q Consensus 40 ~~~~~~l~~~~~~~~s~~~~~~nK~il~~~~f~-~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (329)
.-++-++++.-.++..+.--...+++++..+|. +.+.+|+.|+.+=..+-++-.. ..+ .++...||
T Consensus 40 kw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~--~~~-----------~k~r~iP~ 106 (367)
T KOG1582|consen 40 KWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQ--LIQ-----------TKRRVIPW 106 (367)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEE--eec-----------ccceecch
Confidence 344545555555555565566778888888887 7899999998755332221111 111 01222454
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccC---
Q 020212 119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD--- 195 (329)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~--- 195 (329)
|....++.+..++...+|.++.|.+.+...+.|.+-.+-+++.+.++-++|+++..+.+..+..+|.++.+..|
T Consensus 107 ---rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~ 183 (367)
T KOG1582|consen 107 ---RTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT 183 (367)
T ss_pred ---hHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc
Confidence 55666777777888899999999999999999999999999999999999999999999999999999876655
Q ss_pred -cccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHH
Q 020212 196 -LSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVL 274 (329)
Q Consensus 196 -~~~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l 274 (329)
.+||..|++..-.+.++.|+-....++.++..+-+..|+++|...++.++++.....+||+.++|.+-..+.+......
T Consensus 184 sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~ 263 (367)
T KOG1582|consen 184 SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYA 263 (367)
T ss_pred CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHH
Confidence 4788999999999999999998888898888788899999999999999998888899998888776544444344555
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccc
Q 020212 275 CFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDF 326 (329)
Q Consensus 275 ~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~ 326 (329)
.+-+..+++...+....++..+|.+...+...|+..++++|+++|.. |++.
T Consensus 264 ~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsK-PfT~ 314 (367)
T KOG1582|consen 264 FLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSK-PFTE 314 (367)
T ss_pred HHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcC-chHH
Confidence 55555565555555567999999999999999999999999999975 9874
No 22
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.74 E-value=7.5e-15 Score=133.01 Aligned_cols=255 Identities=16% Similarity=0.155 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHH
Q 020212 45 ANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHT 124 (329)
Q Consensus 45 ~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (329)
....+.+...........|....+ ...+......|..............++.+.+ + ..+..+..
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~~ 72 (292)
T COG0697 9 LLALLLWGLLWGLSFIALKLAVES--LDPFLFAAALRFLIAALLLLPLLLLEPRGLR-----------P---ALRPWLLL 72 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHHHHhhccccc-----------c---cccchHHH
Confidence 333344444444444455666654 1234555566888777663333332211000 0 01112333
Q ss_pred HHH-HHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHH-HHhCcccCcchhhhhhHhhhhhhheeccCcccc---
Q 020212 125 LPL-AVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEY-FLAGQKYTPPVVGSVGLIILGAFVAGARDLSFD--- 199 (329)
Q Consensus 125 ~~~-~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~-~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~--- 199 (329)
... ++.......+.+.++++++++.++++.++.|+++.+++. +++|||++++++.+++++++|+.++..++...+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~ 152 (292)
T COG0697 73 LLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILS 152 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHH
Confidence 333 456777888999999999999999999999999999997 677999999999999999999999776655433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHH-HHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHH
Q 020212 200 FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMW-CNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSC 278 (329)
Q Consensus 200 ~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 278 (329)
..|.++++.+++++|.+.+..|+.. +.++..... +... . ..+........+.. ...+...+..+...+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g 221 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS---RLGPVTLALLLQLL-L-ALLLLLLFFLSGFG------APILSRAWLLLLYLG 221 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHH-H-HHHHHHHHHhcccc------ccCCHHHHHHHHHHH
Confidence 5899999999999999999999986 346666665 3333 1 11111111111110 112234467777777
Q ss_pred HHHHH-HHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 279 ILAFF-LNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 279 ~~~~~-~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
+++.. .....++++++.++...++....+|+.+++++++++|| +.+..
T Consensus 222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e-~~~~~ 270 (292)
T COG0697 222 VFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGE-PLSPA 270 (292)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCC-CCcHH
Confidence 77775 44455789999999999999999999999999999998 66543
No 23
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.69 E-value=5.7e-15 Score=130.67 Aligned_cols=204 Identities=13% Similarity=0.112 Sum_probs=163.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCc
Q 020212 117 PLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL 196 (329)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~ 196 (329)
++|+..++...+++|.+.+.+.+.++++++.+.+|+++.+-.++++++.++++|||.++++|.++.+.++|+++...++.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 35677788888999999999999999999999999999999999999999999999999999999999999988532211
Q ss_pred -----------------ccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhh
Q 020212 197 -----------------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETT 259 (329)
Q Consensus 197 -----------------~~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 259 (329)
+....|+++.++++++.++..++.+|++|+.+.+.+.........+.++.++.... .|....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~-~~~~~~ 171 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLL-SDGSAI 171 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhc-cccccc
Confidence 11257999999999999999999999999877677777777777777776655432 232222
Q ss_pred hcC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccc
Q 020212 260 INF--PYLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDF 326 (329)
Q Consensus 260 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~ 326 (329)
.+. -..+++..|..++..++.|....+ .+|+.+...=.....+..+++.++++++||. +++.
T Consensus 172 ~~~g~f~G~~~~~~~~i~~~a~gGllva~----v~KyadnI~K~fa~a~siv~t~~~s~~lf~~-~~s~ 235 (244)
T PF04142_consen 172 SESGFFHGYSWWVWIVIFLQAIGGLLVAF----VLKYADNIVKGFATAVSIVLTAVLSVLLFGF-PPSL 235 (244)
T ss_pred ccCCchhhcchHHHHHHHHHHHhhHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC-CCch
Confidence 221 123445567777777777776665 5899999999999999999999999999986 7765
No 24
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.68 E-value=1.8e-14 Score=123.39 Aligned_cols=233 Identities=18% Similarity=0.141 Sum_probs=180.7
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHHHHHHHHHHHHHHHhhh
Q 020212 61 FNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVE 140 (329)
Q Consensus 61 ~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (329)
+.|.++... -|.-.+++|..++.+++..+.+-.+. +.++++++.+..+|.....++.++|.
T Consensus 30 ~Ak~LFP~v---G~~g~t~lRl~~aaLIll~l~RPwr~----------------r~~~~~~~~~~~yGvsLg~MNl~FY~ 90 (292)
T COG5006 30 FAKSLFPLV---GAAGVTALRLAIAALILLALFRPWRR----------------RLSKPQRLALLAYGVSLGGMNLLFYL 90 (292)
T ss_pred HHHHHcccc---ChhhHHHHHHHHHHHHHHHHhhHHHh----------------ccChhhhHHHHHHHHHHHHHHHHHHH
Confidence 468888755 35568999999999887776653221 14567889999999999999999999
Q ss_pred hhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhee---ccCcccchhhHHHHHHHHHHHHHHH
Q 020212 141 SVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG---ARDLSFDFFGYAVVFLANITTAIYL 217 (329)
Q Consensus 141 al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~---~~~~~~~~~G~~~~l~s~~~~A~~~ 217 (329)
+++.+|.+.+..+.++.|+.+.++.. +| .+....+.+.+.|..+.. .+..+.|+.|..+++.+..|||.|.
T Consensus 91 si~riPlGiAVAiEF~GPL~vA~~~s----Rr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YI 164 (292)
T COG5006 91 SIERIPLGIAVAIEFTGPLAVALLSS----RR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYI 164 (292)
T ss_pred HHHhccchhhhhhhhccHHHHHHHhc----cc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999998876653 32 344556667777876632 2334678999999999999999999
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHH-HHHhhccc
Q 020212 218 ATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSI-FLNTTLNS 296 (329)
Q Consensus 218 v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~~~s 296 (329)
+..||..+ ..+.-+-+.+.+.+++++.+|+.....+ +...++.....-+..++++...-|+. ..++++.+
T Consensus 165 v~G~r~g~--~~~g~~g~a~gm~vAaviv~Pig~~~ag-------~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp 235 (292)
T COG5006 165 VLGQRAGR--AEHGTAGVAVGMLVAALIVLPIGAAQAG-------PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLP 235 (292)
T ss_pred HHcchhcc--cCCCchHHHHHHHHHHHHHhhhhhhhcc-------hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCC
Confidence 99999986 3466677778888888888888753222 22344444455566777777777766 66899999
Q ss_pred hhhHHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 297 AVTQTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 297 a~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
+-++++.-.+||..+.+.|++++|| ..|+.+
T Consensus 236 ~~~F~~LlSLePa~aAl~G~i~L~e-~ls~~q 266 (292)
T COG5006 236 ARTFGTLLSLEPALAALSGLIFLGE-TLTLIQ 266 (292)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcC-CCCHHH
Confidence 9999999999999999999999998 776543
No 25
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.67 E-value=4.7e-14 Score=128.52 Aligned_cols=245 Identities=13% Similarity=0.123 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHH
Q 020212 45 ANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHT 124 (329)
Q Consensus 45 ~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (329)
++++++|+..++. .|.+. +++.++.. |..++.++........+. ++ ...++.+..-
T Consensus 7 lia~~~wGs~g~~----~k~~~---g~~~~~~~---~~~~g~l~~~~~~~~~~~--~~------------~~~~~~~~~g 62 (290)
T TIGR00776 7 LIPALFWGSFVLI----NVKIG---GGPYSQTL---GTTFGALILSIAIAIFVL--PE------------FWALSIFLVG 62 (290)
T ss_pred HHHHHHHhhhHHH----HhccC---CCHHHHHH---HHHHHHHHHHHHHHHHhC--Cc------------ccccHHHHHH
Confidence 5667777777664 46654 44554432 666666655544332111 10 0112333444
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHHHh-HHHHHHHHHHHHHhCcccCcch----hhhhhHhhhhhhheeccCcc--
Q 020212 125 LPLAVAYLLYMVVSVESVRGVNVPMYTTLRR-TTVAFTMIMEYFLAGQKYTPPV----VGSVGLIILGAFVAGARDLS-- 197 (329)
Q Consensus 125 ~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~-~~p~~~~i~~~~~~~e~~~~~~----~~~l~l~~~Gv~l~~~~~~~-- 197 (329)
+..|+++..++++.+.+.++++++.+..+-+ +.+++..+++.+++||+.++++ +.+++++++|+++....+.+
T Consensus 63 ~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~ 142 (290)
T TIGR00776 63 LLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA 142 (290)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc
Confidence 4555668889999999999999999998888 8888999999999999999999 99999999999885432211
Q ss_pred -----cc-hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHH---HHHHHHHHHHHHHHHHhcchhhhhcCCCCcch
Q 020212 198 -----FD-FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMW---CNGVICGPLLLLWTFLRGDLETTINFPYLLSP 268 (329)
Q Consensus 198 -----~~-~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 268 (329)
.+ ..|++++++|+++|+.|.+..|+. ++++.+..+ +..+++.....+.. . + + .++.+.
T Consensus 143 ~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~-----~-~~~~~~ 209 (290)
T TIGR00776 143 GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH--I-L-----A-KPLKKY 209 (290)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH--h-c-----c-cchHHH
Confidence 33 689999999999999999999975 258888744 44444443332221 0 0 0 111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 269 GFLVVLCFSCILAFFLNYSIFLNTT-LNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~i~-~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
..+. ....|++....+...+...+ +.++.+.++...++|+.+++.+++++|| +.++.|
T Consensus 210 ~~~~-~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E-~~~~~~ 268 (290)
T TIGR00776 210 AILL-NILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGE-KKTKRE 268 (290)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhcc-CCCcce
Confidence 2233 33377775444444457788 9999999999999999999999999998 877665
No 26
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.66 E-value=1.1e-16 Score=137.57 Aligned_cols=251 Identities=11% Similarity=0.072 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHH
Q 020212 45 ANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHT 124 (329)
Q Consensus 45 ~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (329)
.+..+. +..+..+.+..|.+.. .|..+.-.|+++-.+..+++....+..+ ..+ +..| +.+
T Consensus 41 ~l~~vs-~ff~~~~vv~t~~~e~-----~p~e~a~~r~l~~mlit~pcliy~~~~v--~gp----~g~R--------~~L 100 (346)
T KOG4510|consen 41 LLLTVS-YFFNSCMVVSTKVLEN-----DPMELASFRLLVRMLITYPCLIYYMQPV--IGP----EGKR--------KWL 100 (346)
T ss_pred eehhhH-HHHhhHHHhhhhhhcc-----ChhHhhhhhhhhehhhhheEEEEEeeee--ecC----CCcE--------EEE
Confidence 455555 5556666666666643 3677888887766666665543222111 001 0011 223
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheecc-----Cc---
Q 020212 125 LPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR-----DL--- 196 (329)
Q Consensus 125 ~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~-----~~--- 196 (329)
+.-|.....+....++|++|++++.+.++.+++|+||.++++.++||++++...++.++.+.||++...+ |.
T Consensus 101 iLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g 180 (346)
T KOG4510|consen 101 ILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEG 180 (346)
T ss_pred EeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccc
Confidence 4447766777889999999999999999999999999999999999999999999999999999885332 11
Q ss_pred ------ccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHH
Q 020212 197 ------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGF 270 (329)
Q Consensus 197 ------~~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 270 (329)
+.+..|-+.++.++++.|.-.++.|++.+ +.+......|-..++.+..++.....|++. .|. ...-
T Consensus 181 ~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk--~~h~~msvsyf~~i~lV~s~I~~~~ig~~~----lP~--cgkd 252 (346)
T KOG4510|consen 181 EDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGK--NAHAIMSVSYFSLITLVVSLIGCASIGAVQ----LPH--CGKD 252 (346)
T ss_pred cccccccccCCchHHHHHhHhhhhhHHHHHHHhhc--cccEEEEehHHHHHHHHHHHHHHhhcccee----cCc--cccc
Confidence 23456899999999999988899999977 457677777878888777776665556542 221 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcC
Q 020212 271 LVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLP 323 (329)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~ 323 (329)
|++++..|+.|+..+....+++++--|...++..+..-+++.+.-+++|||.|
T Consensus 253 r~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~P 305 (346)
T KOG4510|consen 253 RWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWP 305 (346)
T ss_pred eEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCC
Confidence 56778889999999999889999889999999999999999999999999854
No 27
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.62 E-value=5.5e-15 Score=133.05 Aligned_cols=206 Identities=17% Similarity=0.127 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCc--
Q 020212 119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL-- 196 (329)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~-- 196 (329)
+..+.-+.++.++.+.++++|.||.+++++..+++.+++-+||..++.++.+||+++.|.+++.+.+.|+++++.+|.
T Consensus 157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 455556667778888999999999999999999999999999999999999999999999999999999999876643
Q ss_pred ------ccchhhHHHHHHHHHHHHHHHHHHHHhhcCC--CCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcch
Q 020212 197 ------SFDFFGYAVVFLANITTAIYLATIARIGKSS--GLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSP 268 (329)
Q Consensus 197 ------~~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 268 (329)
+-...|.+++++||+.||+|.++.||...++ +.|--....|..++..++++|..++..-. ....++...+.
T Consensus 237 ~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e~F~lP~~~ 315 (416)
T KOG2765|consen 237 NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEERFELPSST 315 (416)
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccCcccCCCCc
Confidence 2237899999999999999999999988765 34444445566666666666543321111 00112222223
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 269 GFLVVLCFSCI-LAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 269 ~~~~~l~~~~~-~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
.+ ..+++.++ ..++.-+.+.++.-.++|++.++--.+...++++.-.++=| .+.++.
T Consensus 316 q~-~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~-~~~S~~ 373 (416)
T KOG2765|consen 316 QF-SLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKG-KHPSAL 373 (416)
T ss_pred ee-EeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcC-CCCCHH
Confidence 33 33444444 44566777788999999999999888877777666555544 476653
No 28
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.59 E-value=1.6e-14 Score=118.91 Aligned_cols=126 Identities=30% Similarity=0.467 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcC-----CCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCC-----CCc-chHH
Q 020212 202 GYAVVFLANITTAIYLATIARIGKS-----SGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFP-----YLL-SPGF 270 (329)
Q Consensus 202 G~~~~l~s~~~~A~~~v~~k~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~-----~~~-~~~~ 270 (329)
|++++++|.++.|+++++.|+..++ .+.++.++++|+++.+.+.+++..+..|+........ ... +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7899999999999999999999987 5899999999999999999999887776654221111 111 4566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 271 LVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
+..++.+|++++..|++.+.+++++||+++++++++|.+..+++|+++||| ++|+.+
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~-~~t~~~ 137 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGE-PITPLQ 137 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCC-cCCHHH
Confidence 788999999999999999999999999999999999999999999999997 888754
No 29
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.56 E-value=4.4e-12 Score=111.47 Aligned_cols=259 Identities=15% Similarity=0.081 Sum_probs=184.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccc--cccccCCCCccCCCCCccccHH
Q 020212 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKI--INFTMGDSLMTSDSSSTFVPLK 119 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 119 (329)
++|++.++.-++....+.+.-|.+-.. .+..+...|.+-+..++.......+ ..+.+ ...++|
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll~~~----~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-----------~~~~p~ 70 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLLEPL----PATEILAHRVIWSFPFMLALLFLLRQWRELKQ-----------LLKQPK 70 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----------HHhCcH
Confidence 567666666666666677888888542 3678999999988877665543321 11110 001224
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCcccc
Q 020212 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFD 199 (329)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~ 199 (329)
.+......+++...+...+.+|...-.+=+++.--+..|++.++++.+++|||+++.|++++.++.+||..-.....+++
T Consensus 71 ~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lp 150 (293)
T COG2962 71 TLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLP 150 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 45555566677778888888999888888888899999999999999999999999999999999999988666556666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHH
Q 020212 200 FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCI 279 (329)
Q Consensus 200 ~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (329)
+ .++.=++.++.|... ||.. +.|+.+-.....+.-.+..+.+.+..++-.+ +....+...+.++..+|.
T Consensus 151 w----val~la~sf~~Ygl~-RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~---~~~~~~~~~~~LLv~aG~ 219 (293)
T COG2962 151 W----VALALALSFGLYGLL-RKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQ---FLQQNANSLWLLLVLAGL 219 (293)
T ss_pred H----HHHHHHHHHHHHHHH-HHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCch---hhhcCCchHHHHHHHhhH
Confidence 4 455556789999886 4433 4577776666666555555544433333221 111123344677777787
Q ss_pred HHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 280 LAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 280 ~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
.+..--.+...+-|+.+=.+..+..+++|....+++++++|| |+|..
T Consensus 220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E-~~~~~ 266 (293)
T COG2962 220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGE-PFDSD 266 (293)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHH
Confidence 665544444567899999999999999999999999999998 98853
No 30
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.49 E-value=5.1e-14 Score=121.94 Aligned_cols=234 Identities=20% Similarity=0.283 Sum_probs=176.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhhcc-cchhHHHH
Q 020212 74 ANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVSVESVRG-VNVPMYTT 152 (329)
Q Consensus 74 p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~-~~vs~~~~ 152 (329)
..++|+.|+++.+.- .+.... ++... +..+|.|+ +...-..+.....++|+++++ ++++...+
T Consensus 33 gNLITFaqFlFia~e--Glif~s--kf~~~---------k~kiplk~---Y~i~V~mFF~vnv~NN~al~f~I~~PlHiI 96 (330)
T KOG1583|consen 33 GNLITFAQFLFIATE--GLIFTS--KFFTV---------KPKIPLKD---YAITVAMFFIVNVTNNYALKFNIPMPLHII 96 (330)
T ss_pred eeehHHHHHHHHHHh--ceeeec--ccccc---------CCCCchhh---hheehheeeeeeeeccceeeecccceEEEE
Confidence 457899999865442 221111 11110 11144443 333344555667799999998 79999999
Q ss_pred HHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheec---cCccc------------c----hhhHHHHHHHHHHH
Q 020212 153 LRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA---RDLSF------------D----FFGYAVVFLANITT 213 (329)
Q Consensus 153 l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~---~~~~~------------~----~~G~~~~l~s~~~~ 213 (329)
+|+-+++-++++.+++.|+|++.+|+.+++.+.+|+++++. .|... + ..|+.+..++.+..
T Consensus 97 fRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~s 176 (330)
T KOG1583|consen 97 FRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLS 176 (330)
T ss_pred EecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998643 22110 0 45888899999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhh----hhcCC-----C--CcchHHHHHHHHHHHHHH
Q 020212 214 AIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLET----TINFP-----Y--LLSPGFLVVLCFSCILAF 282 (329)
Q Consensus 214 A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----~~~~~-----~--~~~~~~~~~l~~~~~~~~ 282 (329)
|...++.++..++++-++-|.++|+.+++.++.+... +|..+ .+..+ . ..-|..|..++.+++.-+
T Consensus 177 a~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~---~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy 253 (330)
T KOG1583|consen 177 AYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMG---DDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQY 253 (330)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhc---chHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHH
Confidence 9999999999998888999999999999988776442 23222 11111 1 113566888899998888
Q ss_pred HHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 283 FLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 283 ~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
+..-..+..-.+++++|++++-++|+.++.++|.+.|++ |+++.
T Consensus 254 ~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~N-pft~~ 297 (330)
T KOG1583|consen 254 FCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFEN-PFTPW 297 (330)
T ss_pred HHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecC-CCCHH
Confidence 776666778889999999999999999999999999976 99874
No 31
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.46 E-value=8e-12 Score=108.59 Aligned_cols=202 Identities=17% Similarity=0.128 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCc------
Q 020212 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL------ 196 (329)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~------ 196 (329)
..+|.+++=..+...-|.++.+++++.+|++|-...+|+.+++..+++++.+.++|+++....+|++.++..|.
T Consensus 88 lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p 167 (372)
T KOG3912|consen 88 LFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDP 167 (372)
T ss_pred eecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCC
Confidence 45677888788888899999999999999999999999999999999999999999999999999988765542
Q ss_pred ----ccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHH-----HhcchhhhhcCCCCcc
Q 020212 197 ----SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTF-----LRGDLETTINFPYLLS 267 (329)
Q Consensus 197 ----~~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~~~~~~~~~~ 267 (329)
+--..|.++.+++-+.-|.+.++.+|.+++.+.+|.+...|..+++.+++-.... ..|+-........+.|
T Consensus 168 ~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD 247 (372)
T KOG3912|consen 168 YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLED 247 (372)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhh
Confidence 2225799999999999999999999999999999999999999998655433221 1121100000000111
Q ss_pred hHH---------HHHHHHHHH--HHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcc
Q 020212 268 PGF---------LVVLCFSCI--LAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFD 325 (329)
Q Consensus 268 ~~~---------~~~l~~~~~--~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~ 325 (329)
+.. -+.+...+. .-.+.|+......|+.||++-.+.+.+|+....+++.....| .|.
T Consensus 248 ~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E-~f~ 315 (372)
T KOG3912|consen 248 WGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWE-YFH 315 (372)
T ss_pred HHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHH-HHH
Confidence 000 122222222 223467777777899999999999999999988888877765 443
No 32
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.6e-10 Score=104.46 Aligned_cols=272 Identities=14% Similarity=0.111 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCc--cccH
Q 020212 43 RGANAAISYMACAVLLVMFNKAALSSY--NFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSST--FVPL 118 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~il~~~--~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 118 (329)
...+..+.--+-..++....||.-... .|. |.+.-++--+.-.+++......+..+..+... +..++ ...+
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~-~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~----~~l~~~i~~~~ 89 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFL-PTTAVFLTEVIKLVFCLFLLLFEERKYAKKSL----KSLSKEILAAP 89 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhh----hhcCHHHHhCh
Confidence 334444444556666777778766543 233 44444443334444444333222101000000 00011 1334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheecc----
Q 020212 119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR---- 194 (329)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~---- 194 (329)
++..++...+++|.+.+-..+.++.+.+.+++|+.-.+-.+.|+++.+++++||.+++||.++++.++|+.++-.+
T Consensus 90 ~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~ 169 (345)
T KOG2234|consen 90 RETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP 169 (345)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 5667788888999998889999999999999999999999999999999999999999999999999999885311
Q ss_pred -C------cccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhh--hcCCCC
Q 020212 195 -D------LSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETT--INFPYL 265 (329)
Q Consensus 195 -~------~~~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~--~~~~~~ 265 (329)
+ .+-...|....+.+.+++++-.++.++++++.+.+-+-...-...++.++.+...+.. |.... ..+-..
T Consensus 170 ~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G 248 (345)
T KOG2234|consen 170 TGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYG 248 (345)
T ss_pred CCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCcccc
Confidence 1 1224789999999999999999999999987776666666666677776665544333 33222 122234
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcc
Q 020212 266 LSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFD 325 (329)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~ 325 (329)
++...|..++..++-|...++. +|+.+-..=.....+-.+++.+.|+.+||- +.|
T Consensus 249 ~s~~vw~vVl~~a~gGLlvs~v----~KyADnIlK~f~~s~aiilt~v~S~~Lf~~-~~t 303 (345)
T KOG2234|consen 249 YSSIVWLVVLLNAVGGLLVSLV----MKYADNILKGFSTSVAIILTTVASIALFDF-QLT 303 (345)
T ss_pred ccHHHHHHHHHHhccchhHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHccC-Cch
Confidence 5667788888888888877765 666666665666667788888999888874 544
No 33
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.01 E-value=2.3e-09 Score=84.48 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=93.0
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHHHHHHHH-HHHHHHH
Q 020212 59 VMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVA-YLLYMVV 137 (329)
Q Consensus 59 ~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 137 (329)
...+|...++. + |...+.+|+..+.+ +..+......+. .+..+++++......+++ ...+..+
T Consensus 7 ~~~~k~~~~~~--~-~~~~~~~~~~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 7 SVFSKKLLKKI--S-PLSITFWRFLIAGI-LLILLLILGRKP------------FKNLSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred HHHHHHHhccC--C-HHHHHHHHHHHHHH-HHHHHHhhcccc------------ccCCChhhhhhhhHhhccceehHHHH
Confidence 44678888864 4 77899999999986 444433222110 011345666777777766 5888999
Q ss_pred hhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 138 SVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 138 ~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
.+.++++++++..+++.++.|+++.+++++++||+++++++.++++++.|+.+.
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999764
No 34
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.95 E-value=2.7e-09 Score=83.31 Aligned_cols=108 Identities=11% Similarity=0.145 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHHHHHHHHHH-HHHHHhhhhhcccchhHHHHHHhHH
Q 020212 79 LLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYL-LYMVVSVESVRGVNVPMYTTLRRTT 157 (329)
Q Consensus 79 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~al~~~~vs~~~~l~~~~ 157 (329)
.+|+.++.+.+......++ +.++. .+...++.+......|++.. .+..+.++|+++.+ +....+.+++
T Consensus 2 a~r~~~~~l~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~ 70 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRG-RLRDL---------FRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLS 70 (113)
T ss_pred HHHHHHHHHHHHHHHHHHc-cHHHH---------HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHH
Confidence 4677777776665544322 11100 00112234455556666554 78889999999999 6888999999
Q ss_pred HHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCcc
Q 020212 158 VAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLS 197 (329)
Q Consensus 158 p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~ 197 (329)
|+++.+++.+++|||++++++.+++++++|+++...+|.+
T Consensus 71 pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 71 PIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999987766654
No 35
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.93 E-value=3.1e-09 Score=88.13 Aligned_cols=173 Identities=14% Similarity=0.139 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCc--cc
Q 020212 121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL--SF 198 (329)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~--~~ 198 (329)
+++..|.++++.+.++.+..+++.++.+.++.+..+.-.|+.+++++.+|+|+..-++++.++++.|+++..+.|. ..
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~ 132 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD 132 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999776553 45
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHH------HHHHhcc--hhhhhcCCCCcchHH
Q 020212 199 DFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLL------WTFLRGD--LETTINFPYLLSPGF 270 (329)
Q Consensus 199 ~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~g~--~~~~~~~~~~~~~~~ 270 (329)
++.|+.+++.|++..|+|.+.-|+...+.+. -+...+++-++..=+.. ...++|. |++. .. ..
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~--Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsF-A~------~P 203 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNANF--GDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSF-AA------AP 203 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCcc--hhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHH-hh------CC
Confidence 7899999999999999999999999875433 33444444333222111 1122331 2211 11 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Q 020212 271 LVVLCFSCILAFFLNYSIFLNTTLNSAVTQTI 302 (329)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv 302 (329)
|..++..+.+....|+.....+..+.|...|+
T Consensus 204 WG~l~G~A~L~lAFN~~iN~GiaL~~PilISi 235 (290)
T KOG4314|consen 204 WGCLCGAAGLSLAFNFLINFGIALLNPILISI 235 (290)
T ss_pred chhhhhHHHHHHHHhhheeehhhhhchhhhee
Confidence 56677777777777887777777777766654
No 36
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.88 E-value=1.9e-08 Score=88.05 Aligned_cols=173 Identities=17% Similarity=0.148 Sum_probs=114.7
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCc---------------------------c
Q 020212 145 VNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL---------------------------S 197 (329)
Q Consensus 145 ~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~---------------------------~ 197 (329)
+++|.....++..++++++......+||++..++++.++...|+......|. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 5788899999999999999999999999999999999999999875221111 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcc----hhhhhcCC--CCcchHHH
Q 020212 198 FDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGD----LETTINFP--YLLSPGFL 271 (329)
Q Consensus 198 ~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~~~~~~--~~~~~~~~ 271 (329)
....|....+.+.++.+...++.++..++++. ++|...+...+..+.....++ .......+ ..++...|
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDT-----MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW 156 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCC-----chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH
Confidence 23557777777778888888888887654322 255444443333222111111 11111111 11223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 272 VVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 272 ~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
..++..++. ..+..+.+|+.++.+.+++..++++.+.++|+++||| |+++.
T Consensus 157 ~~~~~~a~~----~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~-~ls~~ 207 (222)
T TIGR00803 157 IVGLLNVGG----GLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDA-KISST 207 (222)
T ss_pred HHHHHHHhc----CceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CccHH
Confidence 333333333 3445567999999999999999999999999999997 88753
No 37
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.87 E-value=2.7e-08 Score=76.98 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=98.2
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHc-cccccccCCCCccCCCCCccccHHHHHHHHHHHHHHHHHH
Q 020212 57 LLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYM 135 (329)
Q Consensus 57 ~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (329)
...++.|.-+++. .|.+-+..|.++..+++...... |+.+- ..+.+.|.+..+..-|+.-.++.
T Consensus 17 L~~iF~KIGl~~v---dp~~At~IRtiVi~~~l~~v~~~~g~~~~------------~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 17 LTPIFAKIGLEGV---DPDFATTIRTIVILIFLLIVLLVTGNWQA------------GGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred HHHHHHHHhcccc---CccHHHHHHHHHHHHHHHHHHHhcCceec------------ccccCcceehhhhHHHHHHHHHH
Confidence 3356789998865 47789999999888777666543 33221 11144566776667778888899
Q ss_pred HHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhee
Q 020212 136 VVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 136 ~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 192 (329)
.+++.|++.-.+|...-+-.++|+++.+++++++|||++.++|++++++.+|+++.+
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999999998764
No 38
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.82 E-value=3.5e-09 Score=91.25 Aligned_cols=241 Identities=14% Similarity=0.130 Sum_probs=163.6
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHHHHHHHHHHHHHHH
Q 020212 58 LVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVV 137 (329)
Q Consensus 58 ~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (329)
..+.+.++-.. +.+.|..-++.....-+++..++..++..-+ .-.|++.+.+++.=.-++++
T Consensus 33 ~a~tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~-----------------~~~~~hYilla~~DVEaNy~ 94 (336)
T KOG2766|consen 33 TAFTSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRRKYI-----------------KAKWRHYILLAFVDVEANYF 94 (336)
T ss_pred chhhhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhhHHH-----------------HHHHHHhhheeEEeecccEE
Confidence 34456666554 4677877777766655555555544432110 12345566666554445666
Q ss_pred hhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCc--------ccchhhHHHHHHH
Q 020212 138 SVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL--------SFDFFGYAVVFLA 209 (329)
Q Consensus 138 ~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~--------~~~~~G~~~~l~s 209 (329)
-..|.||++....+.+-.-..+.+++++++++|.|+++.++.++++-..|+++....|. +....|+++.+++
T Consensus 95 vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~G 174 (336)
T KOG2766|consen 95 VVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAG 174 (336)
T ss_pred EeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEec
Confidence 67899999999999999999999999999999999999999999999999988644332 2236799999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHHHHHHHHHH-
Q 020212 210 NITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAFFLNYSI- 288 (329)
Q Consensus 210 ~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 288 (329)
+-+||+.++..+.+.+ +.+..+++....+++.++..+-.+. +.- .... -.+++.....+. ..++.++-++.
T Consensus 175 ATlYaVSNv~EEflvk--n~d~~elm~~lgLfGaIIsaIQ~i~-~~~-~~~t--l~w~~~i~~yl~--f~L~MFllYsl~ 246 (336)
T KOG2766|consen 175 ATLYAVSNVSEEFLVK--NADRVELMGFLGLFGAIISAIQFIF-ERH-HVST--LHWDSAIFLYLR--FALTMFLLYSLA 246 (336)
T ss_pred ceeeeeccccHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHhh-hcc-ceee--EeehHHHHHHHH--HHHHHHHHHHhh
Confidence 9999999999999987 6799999998899988877665322 111 1111 112222111111 22222233333
Q ss_pred HHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 289 FLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 289 ~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
=..+|..||+.+.+--.-...+++++ -.|| .+++|+
T Consensus 247 pil~k~~~aT~~nlslLTsDmwsl~i--~~Fg-Yhv~wL 282 (336)
T KOG2766|consen 247 PILIKTNSATMFNLSLLTSDMWSLLI--RTFG-YHVDWL 282 (336)
T ss_pred HHheecCCceEEEhhHhHHHHHHHHH--HHHh-cchhhh
Confidence 24578888888777777778888887 5666 367775
No 39
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.74 E-value=1.2e-07 Score=73.42 Aligned_cols=117 Identities=10% Similarity=0.060 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHHHH
Q 020212 203 YAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAF 282 (329)
Q Consensus 203 ~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (329)
.+++++|++++++..++.|.-.+ +.||...++.-+.....++..+...+|.+....+ .++..|..+.++|+.+-
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~----~~~k~~lflilSGla~g 78 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGE----IGPKSWLFLILSGLAGG 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceecccc----cCcceehhhhHHHHHHH
Confidence 58999999999999999988776 6788888888888888888888888887643322 34455788999998888
Q ss_pred HHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccc
Q 020212 283 FLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDF 326 (329)
Q Consensus 283 ~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~ 326 (329)
...++.|++++.-.++.+...+-..+++++++|++++|| .+|.
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E-~ls~ 121 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGE-RLSL 121 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcC-CCCH
Confidence 888888999999999999999999999999999999998 6664
No 40
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.67 E-value=1.2e-06 Score=78.40 Aligned_cols=133 Identities=12% Similarity=0.014 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHH
Q 020212 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTL 121 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (329)
.++....+.-.++........|...++++- .+..+..+|+.++.+.+.+........ ...+.+++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~ 191 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGP-ELLQFTGWVLLLGALLLLPFAWFLGPN--------------PQALSLQW 191 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHhcCCC--------------CCcchHHH
Confidence 355555555555555556678888876532 233455578888877766665432211 00234556
Q ss_pred HHHHHHHHH-HHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhh
Q 020212 122 MHTLPLAVA-YLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAF 189 (329)
Q Consensus 122 ~~~~~~~l~-~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~ 189 (329)
...+..+++ ......+++.++++.+++...++.++.|++..+++++++||++++.++.+..+++.|+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 192 GALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 656666655 46678899999999999999999999999999999999999999999999999999873
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.50 E-value=1.1e-05 Score=71.72 Aligned_cols=191 Identities=10% Similarity=0.058 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hHHHHHHHHHHHHHhCcccCcchhh----hhhHhhhhhhheec
Q 020212 119 KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLR-RTTVAFTMIMEYFLAGQKYTPPVVG----SVGLIILGAFVAGA 193 (329)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~-~~~p~~~~i~~~~~~~e~~~~~~~~----~l~l~~~Gv~l~~~ 193 (329)
+.+..-+..|+++..++...+.|++++.+|.+-=+. ...-+.+.+..+++++|..+..++. +++++++|+.+.+.
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 556666777899999999999999999888766554 4667778999999999998776664 88889999998655
Q ss_pred cCcc--------cchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCC
Q 020212 194 RDLS--------FDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYL 265 (329)
Q Consensus 194 ~~~~--------~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 265 (329)
.|.+ ....|+...+++.+.|..|.+..|.. +.|+++..+=++.-..+...++....++ ...+..
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~~~~~--~~~~k~-- 194 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNLFSKK--PFFEKK-- 194 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhhcccc--cccccc--
Confidence 4322 12569999999999999999997663 4588777664433322222233322211 111111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCc
Q 020212 266 LSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGL 322 (329)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~ 322 (329)
. +.=+..|++=-..|++.+.+.++.+..+.=...-+..+.+.+-|.++|||.
T Consensus 195 ----~-~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~ 246 (269)
T PF06800_consen 195 ----S-WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEK 246 (269)
T ss_pred ----h-HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEec
Confidence 1 222345555555566667778888888888888889999999999999984
No 42
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.45 E-value=7.5e-07 Score=69.97 Aligned_cols=108 Identities=23% Similarity=0.300 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHHH-HHHHHHHH
Q 020212 211 ITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILA-FFLNYSIF 289 (329)
Q Consensus 211 ~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~ 289 (329)
+++|.+.+..|+..+ +.|+.+..++....+.+ +.+.....+... ....+...+..+...++++ ...+...+
T Consensus 1 ~~~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLK--KISPLSITFWRFLIAGI-LLILLLILGRKP-----FKNLSPRQWLWLLFLGLLGTALAYLLYF 72 (126)
T ss_pred ceeeeHHHHHHHHhc--cCCHHHHHHHHHHHHHH-HHHHHHhhcccc-----ccCCChhhhhhhhHhhccceehHHHHHH
Confidence 467889999999987 47999999999999887 555544433321 1112222345555666654 55556668
Q ss_pred HHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 290 LNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 290 ~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
.+++++++...++..+++|+.+.+++++++|| ++++.
T Consensus 73 ~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e-~~~~~ 109 (126)
T PF00892_consen 73 YALKYISASIVSILQYLSPVFAAILGWLFLGE-RPSWR 109 (126)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHcCC-CCCHH
Confidence 89999999999999999999999999999997 77764
No 43
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.31 E-value=2.1e-05 Score=72.01 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=91.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHH
Q 020212 196 LSFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLC 275 (329)
Q Consensus 196 ~~~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 275 (329)
.+....|.++.++++++++...+..|.. . +.++.++.++...++.+++++.....++....... ..++..+...+
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 77 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL--IQTPQKIFMLA 77 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--HcCHHHHHHHH
Confidence 3344679999999999999999999764 4 57999999999999988776665444443221110 01222233333
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 276 FSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
..++.....+.+.+++++++++...++..+..|++..+++++++|| +++..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E-~~~~~ 128 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGE-RFRRM 128 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcC-CCcHH
Confidence 4444444456666889999999999999999999999999999997 77754
No 44
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.27 E-value=2.6e-05 Score=69.72 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhh-hcCCCCcchHHHHHHHHHHH
Q 020212 201 FGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETT-INFPYLLSPGFLVVLCFSCI 279 (329)
Q Consensus 201 ~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~l~~~~~ 279 (329)
.|.++.++++++++...+..|. .. +.++.++.++-..++.+.+.++....++.... .+.........+..+...|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 4889999999999999999997 34 48999999999999988776665444432111 01111111112345566666
Q ss_pred HHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 280 LAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 280 ~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
+....+.+.+.+++++++.+.++..+..|+++.+++++++|| ++++.
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~E-k~~~~ 125 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKE-RISRF 125 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHH
Confidence 666666677889999999999999999999999999999997 87764
No 45
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.20 E-value=9.1e-06 Score=63.04 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhee
Q 020212 129 VAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 129 l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 192 (329)
.++.+..++...+++++|++.+..+-++.++++.+.+++++|||++++++.++.++++|+++.+
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4567788899999999999999999999999999999999999999999999999999997743
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.15 E-value=8.3e-05 Score=69.76 Aligned_cols=122 Identities=13% Similarity=0.149 Sum_probs=82.9
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccc-cccccCCCCccCCCCCccccHHHHHHHHHHHHHHHHHHHHh
Q 020212 60 MFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKI-INFTMGDSLMTSDSSSTFVPLKTLMHTLPLAVAYLLYMVVS 138 (329)
Q Consensus 60 ~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (329)
+..|....++ +.+...++++..+..+.+.+...... ...+. . ....+... ..++-.++.-.+...++
T Consensus 206 il~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~--~-------~~~~~~~~-~~i~y~~i~t~lay~lw 273 (358)
T PLN00411 206 ILQAHIMSEY--PAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSV--W-------IIHFDITL-ITIVTMAIITSVYYVIH 273 (358)
T ss_pred HHHHHHHHHc--CcHhHHHHHHHHHHHHHHHHHHHHHccCCccc--c-------eeccchHH-HHHHHHHHHHHHHHHHH
Confidence 3556666654 55556777888777665544333210 00000 0 00012221 12222334444566789
Q ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheec
Q 020212 139 VESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 139 ~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~ 193 (329)
++++++.+++.+.+...+.|++.+++++++++|++++.++++.+++++|+.++..
T Consensus 274 ~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 274 SWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988643
No 47
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.15 E-value=7.2e-05 Score=68.26 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHH
Q 020212 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMH 123 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (329)
+.++++.-..+.......+|..-. +.+...+.+|+.++...+.+......... ....+.+.+..
T Consensus 151 G~l~~l~a~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 214 (292)
T PRK11272 151 GAILILIASASWAFGSVWSSRLPL----PVGMMAGAAEMLAAGVVLLIASLLSGERL------------TALPTLSGFLA 214 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC----CcchHHHHHHHHHHHHHHHHHHHHcCCcc------------cccCCHHHHHH
Confidence 333333333333333344565432 12445678888888776655543211100 00123455666
Q ss_pred HHHHHHH-HHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheec
Q 020212 124 TLPLAVA-YLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 124 ~~~~~l~-~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~ 193 (329)
+...+++ ..+...++++++++.+.+...++..+.|++.++++++++||++++.++.+.++++.|+.+...
T Consensus 215 i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 215 LGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 6666654 456778999999999999999999999999999999999999999999999999999987544
No 48
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.10 E-value=0.00014 Score=66.48 Aligned_cols=131 Identities=14% Similarity=0.135 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHH
Q 020212 43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
.+.++++.-.++.....+..|....++ + |.... ++..++.+++.+........ ...++..+.
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~~~--~-~~~~~-~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~ 209 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAEH--G-PATVA-IGSLIAALIFVPIGALQAGE--------------ALWHWSILP 209 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC--C-chHHH-HHHHHHHHHHHHHHHHccCc--------------ccCCHHHHH
Confidence 355555555555555555677776543 3 44444 44455555444433321100 002233344
Q ss_pred HHHHHHHH-HHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 123 HTLPLAVA-YLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 123 ~~~~~~l~-~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
..+..+++ ..+...++++++++++.+.++++..+.|++..++++++++|+++..++.+..+++.|++..
T Consensus 210 ~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~ 279 (293)
T PRK10532 210 LGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGS 279 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 44455654 4556678999999999999999999999999999999999999999999999999999775
No 49
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.09 E-value=4.8e-05 Score=69.52 Aligned_cols=194 Identities=15% Similarity=0.121 Sum_probs=113.1
Q ss_pred HHHHH-HHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhee-cc--Ccc-c
Q 020212 124 TLPLA-VAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG-AR--DLS-F 198 (329)
Q Consensus 124 ~~~~~-l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~-~~--~~~-~ 198 (329)
.+..| +++.++......|+.+.|.+..+-+.....++..+++..++|||++++.+.++.++++|..+.. .+ +.+ .
T Consensus 52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~ 131 (300)
T PF05653_consen 52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIH 131 (300)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcC
Confidence 34455 3567788899999999999999999999999999999999999999999999999999997632 21 111 1
Q ss_pred c---------hhh---HHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhh-cCCCC
Q 020212 199 D---------FFG---YAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTI-NFPYL 265 (329)
Q Consensus 199 ~---------~~G---~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~~ 265 (329)
+ ..+ +...... ++..+.....+|..++ +........+.++..-.+..-....-..... ..+..
T Consensus 132 t~~~l~~~~~~~~fl~y~~~~~~-~~~~L~~~~~~r~g~~---~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f 207 (300)
T PF05653_consen 132 TLDELIALLSQPGFLVYFILVLV-LILILIFFIKPRYGRR---NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQF 207 (300)
T ss_pred CHHHHHHHhcCcceehhHHHHHH-HHHHHHHhhcchhccc---ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhh
Confidence 1 012 1111111 1111212222222111 1111111122222221111100000011111 11223
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhh-hHHHHHHHHHHHhhCC
Q 020212 266 LSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGN-LKDLFTIGLGWILFGG 321 (329)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~-l~~i~~~~~~~~~fge 321 (329)
.++.+|.+++....++....+..++++++.+++.+.++.+ +-...+++-|.++|+|
T Consensus 208 ~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e 264 (300)
T PF05653_consen 208 TYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQE 264 (300)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcc
Confidence 4466677776666667777777788999988876655544 3566777788889987
No 50
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.06 E-value=0.00016 Score=59.09 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-----CCCCchHHHHHHHHHHHHHHHHHHHHc-cccccccCCCCccCCCCCccccHH
Q 020212 46 NAAISYMACAVLLVMFNKAALSS-----YNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLK 119 (329)
Q Consensus 46 l~~~~~~~~s~~~~~~nK~il~~-----~~f~~p~~l~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 119 (329)
..++...++...-....|..+++ .+.+ +..+..+....+.+.+.+.... +..+..+... +. ...+...+.+
T Consensus 3 ~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~-~~-~~~~~~~~~~ 79 (153)
T PF03151_consen 3 ILALASSLFSALRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFS-EI-FGEELSSDPN 79 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH-Hh-hhhhhcchHH
Confidence 33444445555555677887776 4554 5666666666676666655432 2211110000 00 0000001224
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhee
Q 020212 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 192 (329)
.+..++..+++....++..+..+++++.-.++++.....+++.+++.++++|+++..++.++++.++|+.+..
T Consensus 80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 4555666677788889999999999999999999999999999999999999999999999999999997643
No 51
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.03 E-value=0.0001 Score=66.84 Aligned_cols=116 Identities=10% Similarity=0.080 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHHHH
Q 020212 203 YAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAF 282 (329)
Q Consensus 203 ~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (329)
+++.+++++++|...+..||..+++ ++. .++....+.+.+.++....... ..+.. .+...+..++..++...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~ 74 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE--PDF--LWWALLAHSVLLTPYGLWYLAQ-VGWSR---LPATFWLLLAISAVANM 74 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch--hHH--HHHHHHHHHHHHHHHHHHhccc-CCCCC---cchhhHHHHHHHHHHHH
Confidence 5788999999999999999887642 333 4555566666666654432110 01111 11223445666777777
Q ss_pred HHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 283 FLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 283 ~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
....+.+.+.++.++...+++.+..|+++.++|++++|| +.++.
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e-~~~~~ 118 (281)
T TIGR03340 75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGE-TLSPL 118 (281)
T ss_pred HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcC-CCCHH
Confidence 777788889999999999999999999999999999997 77653
No 52
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.03 E-value=0.00018 Score=65.75 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 117 PLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
+++.+..++..++...+..+++++++++.+++..+.+.++.|++..++++++++|+++..++.+.++++.|+.+.
T Consensus 211 ~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 211 SLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 345555555555555667889999999999999999999999999999999999999999999999999999764
No 53
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.86 E-value=0.00076 Score=61.75 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=65.5
Q ss_pred cHHHHHHHHHHHHH-HHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheec
Q 020212 117 PLKTLMHTLPLAVA-YLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 117 ~~~~~~~~~~~~l~-~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~ 193 (329)
+.+.+..++-.+++ ..+...+++.++++.+.+....+..+.|++..++++++++|+++..++.+.+++++|+.+...
T Consensus 210 ~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 210 DMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVF 287 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence 44566666666644 345667899999999999999999999999999999999999999999999999999987543
No 54
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.72 E-value=0.00046 Score=63.21 Aligned_cols=145 Identities=17% Similarity=0.119 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHc-cccccccCCCCccCCCCCccccHHHH
Q 020212 43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLKTL 121 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (329)
.|.++++...++........|....+.+++ |..++.+++..+.+.+.+.... ........+..+ ... .......
T Consensus 145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~---~~~-~~~~~~~ 219 (302)
T TIGR00817 145 AGFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQ---AIS-GVNVTKI 219 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH---hhc-ccCchHH
Confidence 465556655555555566778777632333 6678899998888776666442 111100000000 000 0000011
Q ss_pred HH-HHHHHH-HHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhee
Q 020212 122 MH-TLPLAV-AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 122 ~~-~~~~~l-~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 192 (329)
.. .+..+. .+...+...+.+++++++..+++.....|+++.++++++++|+++..++++.+++++|+.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 220 YTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 11 112222 333333566789999999999999999999999999999999999999999999999998854
No 55
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.65 E-value=0.02 Score=53.14 Aligned_cols=265 Identities=11% Similarity=0.047 Sum_probs=143.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHH-HHccccccccCCCCccCCCCCccccHHH
Q 020212 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFL-RRWKIINFTMGDSLMTSDSSSTFVPLKT 120 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (329)
.-+++++++-+.|..+...-.|. ..+. ++..+ -....+++.+++... ..++...+.+. -...+.+.
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w--~wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~---------~~~~~~~~ 72 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKKW--SWETM-WSVGGIFSWLILPWLIAALLLPDFWAY---------YSSFSGST 72 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCCC--chhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHH---------HHhcCHHH
Confidence 45677777777777776666676 4433 33222 112333444433311 11111111100 00123455
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHh-HHHHHHHHHHHHHhCccc---C----cchhhhhhHhhhhhhhee
Q 020212 121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRR-TTVAFTMIMEYFLAGQKY---T----PPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~-~~p~~~~i~~~~~~~e~~---~----~~~~~~l~l~~~Gv~l~~ 192 (329)
+..-+..|+++..++.....+.+|+.+|...-+.. +.-++..++..++++|-. + .....+++++++|+.+.+
T Consensus 73 ~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s 152 (345)
T PRK13499 73 LLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVG 152 (345)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 66667778899999999999999999998775544 677778888888888643 2 234578888889998854
Q ss_pred c----cCc---------ccchhhHHHHHHHHHHHHHHH-------HHHHHhhcCCCCChhhHHHHHHH---HHHHHHH-H
Q 020212 193 A----RDL---------SFDFFGYAVVFLANITTAIYL-------ATIARIGKSSGLNSFGLMWCNGV---ICGPLLL-L 248 (329)
Q Consensus 193 ~----~~~---------~~~~~G~~~~l~s~~~~A~~~-------v~~k~~~~~~~~~~~~~~~~~~~---~~~~~l~-~ 248 (329)
. .|. +....|++++++|.+.++.|. ...+.. .+.+.++.....-+.. ++....- +
T Consensus 153 ~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a-~~~g~~~~~~~lp~~~~~~~G~~~~n~~ 231 (345)
T PRK13499 153 RAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAA-AALGVDPLYAALPSYVVIMGGGAITNLG 231 (345)
T ss_pred HhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhh-hhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 4 222 123679999999999999999 433322 1123444433332222 3333222 2
Q ss_pred HHHH---h-cchhhhhcCCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHhhccchh----hHHHhhhhHHHHHHHHHHHh
Q 020212 249 WTFL---R-GDLETTINFPYLLS--PGFLVVLCFSCILAFFLNYSIFLNTTLNSAV----TQTICGNLKDLFTIGLGWIL 318 (329)
Q Consensus 249 ~~~~---~-g~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~----~~sv~~~l~~i~~~~~~~~~ 318 (329)
++.. . +++....++..... ..-.....+.|++=...++....+-++.+.. .+.+-..+.-+++.+-|. +
T Consensus 232 ~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~ 310 (345)
T PRK13499 232 FCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-V 310 (345)
T ss_pred HHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-h
Confidence 2221 1 11111111111000 1112333444554444555555555555332 222443666688888888 4
Q ss_pred hCC
Q 020212 319 FGG 321 (329)
Q Consensus 319 fge 321 (329)
+||
T Consensus 311 lkE 313 (345)
T PRK13499 311 LKE 313 (345)
T ss_pred hhh
Confidence 887
No 56
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.59 E-value=0.00037 Score=55.44 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=60.7
Q ss_pred HHHH-HHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHH--HhCcccCcchhhhhhHhhhhhhheec
Q 020212 125 LPLA-VAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYF--LAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 125 ~~~~-l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~--~~~e~~~~~~~~~l~l~~~Gv~l~~~ 193 (329)
+..+ +++.+..++.++++++.+++.+..+.+..+.++.+.++. ++||+++++++++++++++|+.+...
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 4445 467888899999999999999999999998888888875 79999999999999999999988654
No 57
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.45 E-value=0.0035 Score=58.77 Aligned_cols=146 Identities=14% Similarity=0.061 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCchHHHHHHHHHHHHHHHHHHHHcc-ccccccC-CCCccCCCCCc
Q 020212 42 RRGANAAISYMACAVLLVMFNKAALSSYN-----FPCANVITLLQMISSCSFLYFLRRWK-IINFTMG-DSLMTSDSSST 114 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~il~~~~-----f~~p~~l~~~r~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~ 114 (329)
..|.+.+++-.++...-.+..|..+++++ .+ +..+..++..++.+++.+..... ..+.... .... ....
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~---~~~~ 268 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYT---ANMT 268 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh---hccc
Confidence 34666666666666666777888887542 22 33455566777777666554321 1000000 0000 0000
Q ss_pred cccH-HHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 115 FVPL-KTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 115 ~~~~-~~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
...+ .-+..++..++.+.+.+.+.+.++++++...+++...+.|+++.++++++++|++++.++++.+++++|+.+.
T Consensus 269 ~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 269 NYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY 346 (350)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence 0111 1111222333455555556668999999999999999999999999999999999999999999999999874
No 58
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.41 E-value=0.00065 Score=53.18 Aligned_cols=68 Identities=10% Similarity=0.172 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHH-HhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhee
Q 020212 125 LPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 125 ~~~~l~~~~~~~~~~~al~~~~vs~~~~l-~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 192 (329)
...-+++..+.++...+++++|++.+..+ ....-+.+.+.+.+++||++++.+++++.++++|++...
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 44456788889999999999999988877 468999999999999999999999999999999998753
No 59
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.41 E-value=0.0041 Score=56.75 Aligned_cols=127 Identities=16% Similarity=0.097 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHH----HHHHHHHHHHHccccccccCCCCccCCCCCcccc
Q 020212 42 RRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMI----SSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVP 117 (329)
Q Consensus 42 ~~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (329)
++++.+.+.-.++.......+|..- + .|...++.|.. .+.++.... + + + + + ..
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~--~---~~~~~~~~~~~g~~~~~~~~~~~~-~--~-~-~---~----------~~ 207 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFG--V---DGLSVLLPQAIGMVIGGIIFNLGH-I--L-A-K---P----------LK 207 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC--C---CcceehhHHHHHHHHHHHHHHHHH-h--c-c-c---c----------hH
Confidence 4677777777777766677788652 2 35556555554 333322222 1 0 0 0 0 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc-ccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchh----hhhhHhhhhhhhe
Q 020212 118 LKTLMHTLPLAVAYLLYMVVSVESVR-GVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVV----GSVGLIILGAFVA 191 (329)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~al~-~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~----~~l~l~~~Gv~l~ 191 (329)
.+.....+..|++......++..+++ +.+++.+.++.+.-|+...+++++++||+.+++++ .+.++++.|+.+.
T Consensus 208 ~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~ 286 (290)
T TIGR00776 208 KYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANIL 286 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHH
Confidence 23334445577777777888889999 99999999999999999999999999999999999 9999999999774
No 60
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.37 E-value=0.0026 Score=56.73 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=96.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHH
Q 020212 198 FDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFS 277 (329)
Q Consensus 198 ~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 277 (329)
.+..|+++++.+-+.++..-.+.|-+ + +.++.|+..|-...+.++++......+.+.+..+ ...++.-+..+..+
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll-~--~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~--~~~~p~~~~~~~l~ 78 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLL-E--PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ--LLKQPKTLLMLALT 78 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHH-c--cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHhCcHHHHHHHHH
Confidence 44689999999999999999998776 4 5699999999999999988877766666655444 23345445555555
Q ss_pred HHHHHHHHHHH-HHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 278 CILAFFLNYSI-FLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 278 ~~~~~~~~~~~-~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
++.-. .|... .++...-.....|.=-++.|.+.+++|.++++| .++..+
T Consensus 79 a~li~-~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkE-rls~~Q 128 (293)
T COG2962 79 ALLIG-LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKE-RLSRLQ 128 (293)
T ss_pred HHHHH-HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHh-hccHHH
Confidence 55433 45554 578999999999999999999999999999998 877643
No 61
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.35 E-value=0.011 Score=53.07 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHHHH-HHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhee
Q 020212 117 PLKTLMHTLPLAVAYL-LYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 117 ~~~~~~~~~~~~l~~~-~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 192 (329)
+.+++......+++.. ....+.+.++++.+++....+..+.|++..++++++++|+++..++.+.++++.|+.+..
T Consensus 210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~ 286 (292)
T COG0697 210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS 286 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence 3456666667776554 588899999999999999999999999999999999999999999999999999998754
No 62
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.34 E-value=0.0068 Score=55.62 Aligned_cols=140 Identities=11% Similarity=0.099 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHc-cccccccCCCCccCCCCCccccHHHHH
Q 020212 44 GANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 44 ~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
|..+++++.++........|.++++++.+ +..+.++....+.+........ ...+..+.-+ -.....+.+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~-~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~-------f~~~~p~~~~ 226 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKS-PWELMFYTNLFSLPFLLILLFLLPTGEFRSAIR-------FISAHPSVLL 226 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHH-------HHHHhHHHHH
Confidence 88888888888888888999999988765 4556666666666654444332 0001000000 0001123556
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
.++..++....++.+-+...+..+.-..+++..+.-+++.+++.++.++++++.+|.|+++.+.|..+-
T Consensus 227 ~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~ 295 (303)
T PF08449_consen 227 YLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY 295 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence 667777777788888888899999999999999999999999999999999999999999999999874
No 63
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0016 Score=58.73 Aligned_cols=192 Identities=12% Similarity=0.016 Sum_probs=112.1
Q ss_pred HHHHH-HHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhee-c-c-Ccc--
Q 020212 124 TLPLA-VAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG-A-R-DLS-- 197 (329)
Q Consensus 124 ~~~~~-l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~-~-~-~~~-- 197 (329)
++..| +.+.++-..++.|+.+.|.+..+-+-+++.+.-++++..++|||.++.-.+++.+.++|-.+.. . + +.+
T Consensus 66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~ 145 (335)
T KOG2922|consen 66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIE 145 (335)
T ss_pred HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccc
Confidence 34456 4678899999999999999999999999999999999999999999999999999999996632 2 1 111
Q ss_pred ---------cchhhHH-HHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHH--hcc-hhh-hhcCC
Q 020212 198 ---------FDFFGYA-VVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFL--RGD-LET-TINFP 263 (329)
Q Consensus 198 ---------~~~~G~~-~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~-~~~-~~~~~ 263 (329)
.++ |++ +..+-.+...+-....++ + +.....+.|..+.+....+-.... .|+ ... ....+
T Consensus 146 t~~el~~~~~~~-~Fliy~~~iil~~~il~~~~~p---~--~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ 219 (335)
T KOG2922|consen 146 SVEEVWELATEP-GFLVYVIIIILIVLILIFFYAP---R--YGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNN 219 (335)
T ss_pred cHHHHHHHhcCc-cHHHHHHHHHHHHHHHheeecc---c--ccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCc
Confidence 111 221 111111111111111221 1 111222333333332221100000 011 000 01122
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhh-hHHHHHHHHHHHhhCC
Q 020212 264 YLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGN-LKDLFTIGLGWILFGG 321 (329)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~-l~~i~~~~~~~~~fge 321 (329)
....+..|..++....+......-.+++++...+..++...+ +=+.++++.|.++|+|
T Consensus 220 ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fke 278 (335)
T KOG2922|consen 220 QLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKE 278 (335)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666555555577888776665555444 4677788888888876
No 64
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.20 E-value=0.0019 Score=49.91 Aligned_cols=67 Identities=12% Similarity=0.207 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhhhhcccchhHHHHHHh-HHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhee
Q 020212 126 PLAVAYLLYMVVSVESVRGVNVPMYTTLRR-TTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 126 ~~~l~~~~~~~~~~~al~~~~vs~~~~l~~-~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 192 (329)
..-+++.+..++...+++++|++.+..+-. ..-+.+.+.+++++||+.++.++.++.++++|++...
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 334577888888999999999999888854 7888999999999999999999999999999998753
No 65
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.15 E-value=0.0021 Score=49.07 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHHHh-HHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 125 LPLAVAYLLYMVVSVESVRGVNVPMYTTLRR-TTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 125 ~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~-~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
...-+++..+.++...++|++|++.+-.+=. ...+.+.+.+++++||+.++.+++++.++++|++..
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 3444677888889999999999997666555 888999999999999999999999999999999874
No 66
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.13 E-value=0.0022 Score=49.37 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLR-RTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 124 ~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~-~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
....-+++..+.++...++|++|++.+-.+= ....+.+.+.+.+++||++++.++.++.+++.|++..
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3344456778888999999999999766554 4888899999999999999999999999999999763
No 67
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0023 Score=48.61 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHH-HHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhee
Q 020212 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTT-LRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 124 ~~~~~l~~~~~~~~~~~al~~~~vs~~~~-l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 192 (329)
....-+++..+..+...+++++|++.+-. -.-...+.+.+.+++++||+.+..+++++.++++|++...
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 34445677888889999999999997654 4558888999999999999999999999999999997643
No 68
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.69 E-value=0.043 Score=49.04 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchh----hhhhHhhhhhhh
Q 020212 124 TLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVV----GSVGLIILGAFV 190 (329)
Q Consensus 124 ~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~----~~l~l~~~Gv~l 190 (329)
-+.-|+++..++++...|.+...++.+-.+..+.++...+.+.+++||+-+++++ .+++++++|.++
T Consensus 198 nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 198 NILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 4556899999999999999999999999999999999999999999999888765 455555555543
No 69
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.58 E-value=0.0089 Score=44.69 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHH-HhHHHHHHHHHHHHHhCcccCcchhhhhhHh
Q 020212 128 AVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLI 184 (329)
Q Consensus 128 ~l~~~~~~~~~~~al~~~~vs~~~~l-~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~ 184 (329)
-.++..+.++...+++++|++.+-.+ .....+.+.+.+.+++||+.++.++.++.++
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 34788888999999999999987554 5699999999999999999999999998764
No 70
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.41 E-value=0.032 Score=43.13 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHH
Q 020212 238 NGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILAF-FLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGW 316 (329)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~ 316 (329)
...++.+.+..+....++..+........+ +..++..|+++. ..+...+.+.++.++ .+++...+.|+++.++|+
T Consensus 4 r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 4 RYLFSVLFLLIILLIRGRLRDLFRALRRKP---WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHH
Confidence 344555555555555555433221110111 334555566555 444444678999985 888999999999999999
Q ss_pred HhhCCcCcccc
Q 020212 317 ILFGGLPFDFV 327 (329)
Q Consensus 317 ~~fge~~~~~~ 327 (329)
++||| +++..
T Consensus 80 ~~~~e-r~~~~ 89 (113)
T PF13536_consen 80 LFFKE-RLSPR 89 (113)
T ss_pred HHhcC-CCCHH
Confidence 99997 77653
No 71
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.11 E-value=0.018 Score=44.42 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLR-RTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~-~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
+++..+|.. ++..+.+.+++.+...++|.+.-+. +++=+||++.++++.+|..+++++.+..+++.|+.+.
T Consensus 41 n~~y~ipf~-lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 41 NPKYIIPFL-LNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 344555554 3444556888899999999888885 8899999999988877778999999999999999763
No 72
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.08 E-value=0.0092 Score=52.58 Aligned_cols=73 Identities=11% Similarity=-0.010 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhh
Q 020212 118 LKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFV 190 (329)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l 190 (329)
++|+.-+..+|++..+++.+-..++|.--++-..+.+.+-.++..+...+++|+.+++..|.+.+.++...+.
T Consensus 250 gkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~ 322 (346)
T KOG4510|consen 250 GKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVW 322 (346)
T ss_pred ccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHH
Confidence 4556667788999999999999999999999999999999999999999999999999999988777655543
No 73
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.04 E-value=0.00046 Score=59.84 Aligned_cols=192 Identities=11% Similarity=0.112 Sum_probs=122.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHh-HHHHHHHHHHHHHhCcccCcchh----hhhhHhhhhhhhe
Q 020212 117 PLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRR-TTVAFTMIMEYFLAGQKYTPPVV----GSVGLIILGAFVA 191 (329)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~-~~p~~~~i~~~~~~~e~~~~~~~----~~l~l~~~Gv~l~ 191 (329)
+.+.+.--+.-|.++..++...+.|.+++.+|-+.-+.. +.-+-+.+++.+.++|..+..+. .++++++.|+.+.
T Consensus 55 T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lT 134 (288)
T COG4975 55 TLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLT 134 (288)
T ss_pred chhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEe
Confidence 445455555666789999999999999998887665444 56677788898999999877765 5788899999997
Q ss_pred eccCc--------ccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCC
Q 020212 192 GARDL--------SFDFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFP 263 (329)
Q Consensus 192 ~~~~~--------~~~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 263 (329)
+..|. +.-..|....+.|.+.|..|.+..|.. +.|.++...-+..-....-+.+....+|... +
T Consensus 135 s~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiLPqAiGMv~~ali~~~~~~~~~~--~-- 206 (288)
T COG4975 135 SKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAILPQAIGMVIGALILGFFKMEKRF--N-- 206 (288)
T ss_pred eeeccccccccChHhhhhheeeeeeeccceeeeEeeeccc----cccchhhhhHHHHHHHHHHHHHhhcccccch--H--
Confidence 66553 112468999999999999999988765 2466665554443332322333333333211 1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCC
Q 020212 264 YLLSPGFLVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGG 321 (329)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge 321 (329)
-. .+.-...|+.=-..|...+.+.++.+-.+.=-..-+.-+.+++-|.+++||
T Consensus 207 ----K~-t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~e 259 (288)
T COG4975 207 ----KY-TWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGE 259 (288)
T ss_pred ----HH-HHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEec
Confidence 11 123334455444456665555554443332223344567788888888887
No 74
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.99 E-value=0.25 Score=45.86 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=51.1
Q ss_pred HhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheec
Q 020212 137 VSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 137 ~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~ 193 (329)
.....+++.++....+.-.++.++.+++..++.|+++++..++|.+++++|.++...
T Consensus 249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEc
Confidence 446678889998899988999999999999999999999999999999999988644
No 75
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.55 E-value=0.32 Score=42.82 Aligned_cols=130 Identities=14% Similarity=0.109 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHH
Q 020212 43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
-++...+.-+.|...-++..|.+=+.- +.+ .=...-+.+++++..++....- . +...++.-+.
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~-~g~a~gm~vAaviv~Pig~~~a------g--------~~l~~p~ll~ 210 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGRAE--HGT-AGVAVGMLVAALIVLPIGAAQA------G--------PALFSPSLLP 210 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhcccC--CCc-hHHHHHHHHHHHHHhhhhhhhc------c--------hhhcChHHHH
Confidence 345555555555555445555554221 223 2345566666666555543110 0 0112222222
Q ss_pred HHHHHHHHHHH-HHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhh
Q 020212 123 HTLPLAVAYLL-YMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAF 189 (329)
Q Consensus 123 ~~~~~~l~~~~-~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~ 189 (329)
.-+.++++... =..+...++++.|.+.+.++.++-|.+-.+...++++|.++..||.++..++++..
T Consensus 211 laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 211 LALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 22333333222 23488899999999999999999999999999999999999999999988876654
No 76
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.25 E-value=0.45 Score=38.28 Aligned_cols=107 Identities=20% Similarity=0.099 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHHH
Q 020212 202 GYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCILA 281 (329)
Q Consensus 202 G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (329)
..++++++..+-+++..+.-++.++.+ +++...+.+...+.+.+.......++. +..+ ..+.. | +..+.|+++
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~---~~~~p-~-w~~lGG~lG 74 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SLAS---LSSVP-W-WAYLGGLLG 74 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-ccch---hccCC-h-HHhccHHHH
Confidence 357889999999999999999887543 599999999999988887776666543 1111 11111 2 233488888
Q ss_pred HHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHH
Q 020212 282 FFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLG 315 (329)
Q Consensus 282 ~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~ 315 (329)
...-.+....+.+.++...........+...++=
T Consensus 75 ~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~i 108 (138)
T PF04657_consen 75 VFFVLSNIILVPRLGAALTTILIVAGQLIASLLI 108 (138)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999998887777666555443
No 77
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.06 E-value=1.3 Score=40.17 Aligned_cols=141 Identities=9% Similarity=0.019 Sum_probs=92.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHH
Q 020212 41 TRRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKT 120 (329)
Q Consensus 41 ~~~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (329)
+..|++.+..|...=.......+.++.+++.+ +..+.+.--++.++...........-++ .++. - ..+++-
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s-~~~mM~~vNLf~~i~~~~~li~qg~~~~---av~F---~--~~hp~~ 240 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVS-SLHMMFGVNLFSAILNGTYLILQGHLLP---AVSF---I--KEHPDV 240 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCcc-HhHHHHHHHHHHHHHHHHhhhcCCCCch---HHHH---H--HcChhH
Confidence 45677777777665554455556677766543 2223333222333332222111110000 0000 0 022366
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhh
Q 020212 121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFV 190 (329)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l 190 (329)
++.++.++.+.+.++.+-++.++.-..=..+++.-+.=++..+++.+..+.+.++.+|.+..+.+.|...
T Consensus 241 ~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 241 AFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 7889999999999999999999887777778888888899999999999999999999999999988865
No 78
>PRK13499 rhamnose-proton symporter; Provisional
Probab=93.63 E-value=2.3 Score=39.62 Aligned_cols=69 Identities=13% Similarity=0.016 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHH---HH-hHHHHHHHHHHHHHhCcccC------cchhhhhhHhhhhhhheecc
Q 020212 125 LPLAVAYLLYMVVSVESVRGVNVPMYTT---LR-RTTVAFTMIMEYFLAGQKYT------PPVVGSVGLIILGAFVAGAR 194 (329)
Q Consensus 125 ~~~~l~~~~~~~~~~~al~~~~vs~~~~---l~-~~~p~~~~i~~~~~~~e~~~------~~~~~~l~l~~~Gv~l~~~~ 194 (329)
..-|+.+....+++..+-+..+.+...+ +. ++..++-.+... ++||+-+ +..+.+++++++|.++...+
T Consensus 264 ~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 264 ALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 5556677787888888887776665555 66 666666666666 6898766 34467778888888775544
No 79
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=93.13 E-value=1.8 Score=34.35 Aligned_cols=101 Identities=10% Similarity=0.037 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHHH
Q 020212 201 FGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCIL 280 (329)
Q Consensus 201 ~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (329)
.|+++.+.+.++.+.-.++.|+-.++. ...+.... . . . ..... .++ ...+..|+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~--g~~~~~~~-~-~--~--~~~~~--------------~~p---~~~i~lgl~ 56 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRL--PLLSHAWD-F-I--A--ALLAF--------------GLA---LRAVLLGLA 56 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhC--CCccchhH-H-H--H--HHHHH--------------hcc---HHHHHHHHH
Confidence 478999999999999999999876643 22221110 0 0 0 00000 001 113344454
Q ss_pred HHHHHHHH-HHHhhccchhhHHHhhhhHHHHHHHHHHH--hhCCcCcccc
Q 020212 281 AFFLNYSI-FLNTTLNSAVTQTICGNLKDLFTIGLGWI--LFGGLPFDFV 327 (329)
Q Consensus 281 ~~~~~~~~-~~~i~~~sa~~~sv~~~l~~i~~~~~~~~--~fge~~~~~~ 327 (329)
++...+.. ..++++.+.......-....+...+.++. +||| ++|+.
T Consensus 57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E-~ls~~ 105 (129)
T PRK02971 57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNE-TFSLK 105 (129)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHH
Confidence 54444443 56799999999888888887778777874 8997 98875
No 80
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=93.09 E-value=1.1 Score=38.97 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhh
Q 020212 126 PLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFV 190 (329)
Q Consensus 126 ~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l 190 (329)
...+..+....+-...++|.+.....+...+.++++.+++.++++++++..++.+..+.+.|+.+
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 33445566667788899999999999999999999999999999999999999999999998754
No 81
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=92.70 E-value=1.3 Score=34.22 Aligned_cols=39 Identities=10% Similarity=-0.102 Sum_probs=34.0
Q ss_pred HHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 289 FLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 289 ~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
..++++.+.......-.+.++.+.++|+++||| ++|+.+
T Consensus 55 ~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E-~ls~~~ 93 (111)
T PRK15051 55 LLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHE-PVSPRH 93 (111)
T ss_pred HHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHH
Confidence 457899999888888889999999999999998 888753
No 82
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=91.41 E-value=3.4 Score=38.22 Aligned_cols=124 Identities=10% Similarity=0.070 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC--CCChhhHHHHHHHHHHHHHHHHHHHhcc--hhhhh---cCCCCcchHHHHHHH
Q 020212 203 YAVVFLANITTAIYLATIARIGKSS--GLNSFGLMWCNGVICGPLLLLWTFLRGD--LETTI---NFPYLLSPGFLVVLC 275 (329)
Q Consensus 203 ~~~~l~s~~~~A~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~---~~~~~~~~~~~~~l~ 275 (329)
++..++..+-.+......|.-.+++ ++.+.+..+.+=.+-.++.....+.... ..... ....+.++....-+.
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~ 96 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS 96 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence 3444445555555555556554332 4666777666666655555544443310 11111 111122232234555
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 276 FSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
.-+++=...|...+.+..+.+|.++++...+|-..+.+++++++++ .+++.
T Consensus 97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~r-kLs~~ 147 (345)
T KOG2234|consen 97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRR-KLSRL 147 (345)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhh-hhhHH
Confidence 6666667777766888999999999999999999999999999986 77764
No 83
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=90.96 E-value=7.1 Score=31.32 Aligned_cols=125 Identities=12% Similarity=0.124 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHcccc-ccccCCCCccCCCCCccccHHHHHHHHHHH
Q 020212 50 SYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKII-NFTMGDSLMTSDSSSTFVPLKTLMHTLPLA 128 (329)
Q Consensus 50 ~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
.-++.-.....+|-.+-+..+ .|..=++.-+..+.+.+.++....+. +.++ -+..|| +.+.-|
T Consensus 8 ~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~----------~~~~p~----w~~lGG 71 (138)
T PF04657_consen 8 LAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRPSLAS----------LSSVPW----WAYLGG 71 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhcccccch----------hccCCh----HHhccH
Confidence 334444444555655555443 46667777777777776666554332 1110 011222 233356
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHhHHH-HHHHHHHHH----HhCcccCcchhhhhhHhhhhhhh
Q 020212 129 VAYLLYMVVSVESVRGVNVPMYTTLRRTTV-AFTMIMEYF----LAGQKYTPPVVGSVGLIILGAFV 190 (329)
Q Consensus 129 l~~~~~~~~~~~al~~~~vs~~~~l~~~~p-~~~~i~~~~----~~~e~~~~~~~~~l~l~~~Gv~l 190 (329)
++-.....+...+...+.++....+.-+.= +.-++++.+ ..|++++++|+.+++++++|+.+
T Consensus 72 ~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 72 LLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 777888889999999999988887766544 444555553 24678899999999999999864
No 84
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=89.66 E-value=1.1 Score=41.18 Aligned_cols=141 Identities=14% Similarity=0.115 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHHHHHH-HHHHc--cccccccCCCCccCCCCCcc
Q 020212 41 TRRGANAAISYMACAVLLVMFNKAALS--SYNFPCANVITLLQMISSCSFLY-FLRRW--KIINFTMGDSLMTSDSSSTF 115 (329)
Q Consensus 41 ~~~~~l~~~~~~~~s~~~~~~nK~il~--~~~f~~p~~l~~~r~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~ 115 (329)
...|...+..+......-.+..|.++. +++.+ +..+..++--++.+.+. +.... +. ++. . . ....
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~-~~~-~-~------~~~~ 230 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGN-KFV-G-F------LTAP 230 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhccc-cee-e-e------eccc
Confidence 457788888888888888888888884 45555 45566666666666665 43221 11 100 0 0 0000
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhee
Q 020212 116 VPLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAG 192 (329)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 192 (329)
.+.. ...+...+++..+.+...+..+.+++.=++++.-..-=+++...++++++++.++.+.++..++++|+.+..
T Consensus 231 ~~~~-~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 231 WFVT-FLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred cchh-hHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 1222 223344446666677788888999988888888887777788888888899889999999999999998853
No 85
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=89.38 E-value=1.1 Score=39.64 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 271 LVVLCFSCILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
.+....-+++=...|...+.++++++|.++.++...|.+.+.+++++++|. +++..+
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r-~ls~~q 73 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKR-RLSRRQ 73 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHc-ccchhh
Confidence 455667777777888888999999999999999999999999999999986 887654
No 86
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.66 E-value=3.8 Score=37.37 Aligned_cols=143 Identities=14% Similarity=0.050 Sum_probs=88.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHH-ccccccccCCCCccCCCCCccccHH
Q 020212 41 TRRGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRR-WKIINFTMGDSLMTSDSSSTFVPLK 119 (329)
Q Consensus 41 ~~~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (329)
+.+|..|+..+..+........|.....-++. -.-+..+..+.+...+.+... ++..+ ... ...+...+..
T Consensus 155 ~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~-~~~lv~yNnl~~L~~l~~~~~~~ge~~--~l~-----~~~~~~~~~~ 226 (314)
T KOG1444|consen 155 NLRGYSWALANCLTTAAFVVYVKKSVDSANLN-KFGLVFYNNLLSLPPLLILSFITGELD--ALS-----LNFDNWSDSS 226 (314)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcccccc-ceeEEeehhHHHHHHHHHHHHHhcchH--HHH-----hhcccccchh
Confidence 34567888888888888777888777644332 122444444455444444432 22111 000 0001111122
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
.+..+..-+++..+-.++...+.+..|+-.+++.....-..+.+...++.++..++....++.+.++|-++.
T Consensus 227 ~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y 298 (314)
T KOG1444|consen 227 VLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLY 298 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHH
Confidence 334444445666666788889999999888888887777777777777777778888888888888887764
No 87
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=85.91 E-value=5.4 Score=34.67 Aligned_cols=139 Identities=11% Similarity=-0.025 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHH
Q 020212 43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLM 122 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
.|.+|+..-+..+....+..|-...-.+|.. ..-.++.-+.+..++..+...-..+ ++.++ ....+-..+.
T Consensus 155 ~GY~Wm~~NclssaafVL~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edw----s~~n~----annl~~d~l~ 225 (309)
T COG5070 155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDW----SPGNL----ANNLSVDSLM 225 (309)
T ss_pred CceEEEehhhHhHHHHHHHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccC----Ccchh----hcCCChHHHH
Confidence 4566666666666666666665543223332 2234555556665555554432111 11010 0112223344
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhh
Q 020212 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFV 190 (329)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l 190 (329)
.++.-|++-.+..++.-++++-++...+.+.-++.-....+-+.+++++..++..+.++++.++...+
T Consensus 226 am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~i 293 (309)
T COG5070 226 AMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAI 293 (309)
T ss_pred HHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 55666677777778899999999999999999998888888888888888888888777766654433
No 88
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=81.82 E-value=6 Score=36.25 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=65.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHH
Q 020212 199 DFFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSC 278 (329)
Q Consensus 199 ~~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 278 (329)
...|..+++.++++.+...++.||-..+.+.++.... + ...+...++.+|..++..
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~-------------------~----~~~~~l~~~~W~~G~~~~- 60 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG-------------------S----GGRSYLRRPLWWIGLLLM- 60 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-------------------c----hhhHHHhhHHHHHHHHHH-
Confidence 4579999999999999999998886543322111100 0 000111222223333322
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 279 ILAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 279 ~~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
.++-..+ +.++...+++.+++.+.+.-+...+++..++|| +++..
T Consensus 61 ~~g~~~~---~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e-~~~~~ 105 (300)
T PF05653_consen 61 VLGEILN---FVALGFAPASLVAPLGALSLVFNAVLARFFLGE-KLTRR 105 (300)
T ss_pred hcchHHH---HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcc-cchHh
Confidence 2343344 347888899999999999999999999999997 87754
No 89
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=80.75 E-value=12 Score=35.03 Aligned_cols=67 Identities=10% Similarity=0.055 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCc
Q 020212 130 AYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL 196 (329)
Q Consensus 130 ~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~ 196 (329)
...+.=+++-.|.-.++.=..++--+.+.+..++...++.++.+++..+++.+.+++|.+.+...+.
T Consensus 327 gtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 327 GTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 3445557888888888888888888889999999999999999999999999999999988765443
No 90
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=80.75 E-value=5 Score=29.72 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=20.3
Q ss_pred HHHhhccchhh-HHHhhhhHHHHHHHHHHHhhCCcCccccC
Q 020212 289 FLNTTLNSAVT-QTICGNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 289 ~~~i~~~sa~~-~sv~~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
..++|+.+... +.+..-+..+.+.+.|+++||| ++|+.+
T Consensus 47 ~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E-~~s~~~ 86 (93)
T PF00893_consen 47 SLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGE-SLSLSK 86 (93)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHH
Confidence 45678777644 4777788999999999999997 998754
No 91
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=80.00 E-value=13 Score=34.44 Aligned_cols=167 Identities=16% Similarity=0.122 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHc-cccccccCCCCccCCCCCccccHHHH
Q 020212 43 RGANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRW-KIINFTMGDSLMTSDSSSTFVPLKTL 121 (329)
Q Consensus 43 ~~~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (329)
-++++..+-.+++.+...=-|.+= +++.. ..-..|-+++.++...+... ...++.+. -...|.+.+
T Consensus 7 ~Gii~h~iGg~~~~sfy~P~kkvk---~WsWE-s~Wlv~gi~swli~P~~~a~l~ip~~~~i---------~~~~~~~~l 73 (344)
T PF06379_consen 7 LGIIFHAIGGFASGSFYVPFKKVK---GWSWE-SYWLVQGIFSWLIVPWLWALLAIPDFFSI---------YSATPASTL 73 (344)
T ss_pred HHHHHHHHHHHHhhhhccchhhcC---CccHH-HHHHHHHHHHHHHHHHHHHHHhCCcHHHH---------HHhCChhHH
Confidence 345555555666665544444441 33332 34555777787776655432 11111100 001334566
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHh-HHHHHHHHHHHHHhC-------cccCcchhhhhhHhhhhhhheec
Q 020212 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRR-TTVAFTMIMEYFLAG-------QKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~-~~p~~~~i~~~~~~~-------e~~~~~~~~~l~l~~~Gv~l~~~ 193 (329)
......|++...+...+-.+.+|+.+|..+-+.- ++-.+=.++-.++.+ ++-....+.++++.++|+.+.+.
T Consensus 74 ~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~ 153 (344)
T PF06379_consen 74 FWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK 153 (344)
T ss_pred HHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence 7778888999888899999999987776554332 222222233223322 23345678999999999987422
Q ss_pred c----C-------cccc-hhhHHHHHHHHHHHHHHHHHHHH
Q 020212 194 R----D-------LSFD-FFGYAVVFLANITTAIYLATIAR 222 (329)
Q Consensus 194 ~----~-------~~~~-~~G~~~~l~s~~~~A~~~v~~k~ 222 (329)
. | .++| ..|.+.+++|.+.+|..+.-...
T Consensus 154 AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~a 194 (344)
T PF06379_consen 154 AGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDA 194 (344)
T ss_pred HHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 1 1 1233 47999999999999999886543
No 92
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=78.99 E-value=6 Score=30.43 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=29.9
Q ss_pred HHHhhccch-hhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 289 FLNTTLNSA-VTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 289 ~~~i~~~sa-~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
..++++.+- ..+++..-+..+.+++.|+++||| ++|+.
T Consensus 48 ~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e-~~~~~ 86 (110)
T PRK09541 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLP 86 (110)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCC-CCCHH
Confidence 346777665 556777778899999999999997 98875
No 93
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=78.31 E-value=28 Score=26.67 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=30.7
Q ss_pred HHhhccch-hhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 290 LNTTLNSA-VTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 290 ~~i~~~sa-~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
.++|+.+- ..+++..-+..+.+.+.|+++||| ++|+.
T Consensus 54 ~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e-~~~~~ 91 (109)
T PRK10650 54 QAVKGIDLSVAYALWGGFGIAATLAAGWILFGQ-RLNRK 91 (109)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHH
Confidence 45777665 678888899999999999999997 88874
No 94
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=77.20 E-value=9.9 Score=28.99 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=31.4
Q ss_pred HHhhccch-hhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 290 LNTTLNSA-VTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 290 ~~i~~~sa-~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
+++|+.+- ..+++..-+..+.+.+.|+++||| ++|+.
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E-~l~~~ 86 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGE-SLSLI 86 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCC-cCCHH
Confidence 46777765 678999999999999999999997 88864
No 95
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.05 E-value=38 Score=27.55 Aligned_cols=105 Identities=14% Similarity=0.069 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchHHHHHHHHHHH
Q 020212 200 FFGYAVVFLANITTAIYLATIARIGKSSGLNSFGLMWCNGVICGPLLLLWTFLRGDLETTINFPYLLSPGFLVVLCFSCI 279 (329)
Q Consensus 200 ~~G~~~~l~s~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (329)
....+.++++..+-..+.-..-|+.+..+ +|.--.+.+...+...+..+......... ... ..+ ..| +....|+
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~-~a~--~~~-~pw-W~~~GG~ 77 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPG-LAA--VAS-APW-WAWIGGL 77 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhh--ccC-Cch-HHHHccc
Confidence 45678889999999999999888877543 67777777888877777666554322111 110 111 112 2334557
Q ss_pred HHHHHHHHHHHHhhccchhhHHHhhhhHHHH
Q 020212 280 LAFFLNYSIFLNTTLNSAVTQTICGNLKDLF 310 (329)
Q Consensus 280 ~~~~~~~~~~~~i~~~sa~~~sv~~~l~~i~ 310 (329)
+|.++-++......+.++.+...+.....++
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli 108 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLI 108 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHH
Confidence 7777777777778888887766655544433
No 96
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=77.04 E-value=2.8 Score=36.64 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhh
Q 020212 120 TLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFV 190 (329)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l 190 (329)
.+..+..+++..++++.+-+....+-+.=.-+++..+.-.|+.+.+.++++...+.++|++-.+.+.|...
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 34455566677777777776666665444455566677789999999999999999999999999988765
No 97
>PRK11431 multidrug efflux system protein; Provisional
Probab=74.05 E-value=13 Score=28.24 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=31.1
Q ss_pred HHhhccch-hhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 290 LNTTLNSA-VTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 290 ~~i~~~sa-~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
.++|+.+- ..+++..-+..+.+.++|+++||| ++|+.
T Consensus 48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e-~~~~~ 85 (105)
T PRK11431 48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGE-SASPA 85 (105)
T ss_pred HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCC-CCCHH
Confidence 45777665 678999999999999999999997 88875
No 98
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=71.73 E-value=12 Score=29.36 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=28.8
Q ss_pred HHHhhccch-hhHHHhhhhHHHHHHHHHHHhhCCcCcccc
Q 020212 289 FLNTTLNSA-VTQTICGNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 289 ~~~i~~~sa-~~~sv~~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
.+++++.+- ..+++..-+..+.+.++|+++||| ++|+.
T Consensus 48 s~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E-~~s~~ 86 (120)
T PRK10452 48 SFAVKKIALGVAYALWEGIGILFITLFSVLLFDE-SLSLM 86 (120)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCC-CCCHH
Confidence 345666665 456777778889999999999997 88865
No 99
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=68.90 E-value=2.1 Score=37.66 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhh----hhhHhhhhhhh
Q 020212 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVG----SVGLIILGAFV 190 (329)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~----~l~l~~~Gv~l 190 (329)
.-...|+.++.++.+...|=+...+++.-.+..+..+...+...+++|||-+++++. ++++++.|..+
T Consensus 211 ~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 211 LNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred HHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence 345668889999999999999999999989999999999999999999999988864 45555556554
No 100
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=65.22 E-value=12 Score=28.43 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH-hHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 122 MHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLR-RTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~-~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
.+.+|+.+=.+ +...++..++..+++.+.-+. +++-.|+.+....+..|....+.+.+..+++.|+.+.
T Consensus 54 ~Y~iPFllNqc-gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 54 EYLIPFLLNQC-GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHh-hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 34445544333 345777888888888766444 4677889999986655556788889999999998653
No 101
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=59.15 E-value=59 Score=29.35 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCc
Q 020212 117 PLKTLMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDL 196 (329)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~ 196 (329)
|+|.....+..++...+++.+--.-++.-.+..+.++....-..|.+++++++.+.++..-..+.++++.|+.+-.+.+.
T Consensus 256 p~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 256 PVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred cHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 34555554555543333332222223334566666666677788899999999999999999999999999998655554
Q ss_pred ccc
Q 020212 197 SFD 199 (329)
Q Consensus 197 ~~~ 199 (329)
+-.
T Consensus 336 nk~ 338 (367)
T KOG1582|consen 336 NKI 338 (367)
T ss_pred CCC
Confidence 433
No 102
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.08 E-value=98 Score=25.23 Aligned_cols=133 Identities=13% Similarity=0.068 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHccccccccCCCCccCCCCCccccHHHHHHH
Q 020212 45 ANAAISYMACAVLLVMFNKAALSSYNFPCANVITLLQMISSCSFLYFLRRWKIINFTMGDSLMTSDSSSTFVPLKTLMHT 124 (329)
Q Consensus 45 ~l~~~~~~~~s~~~~~~nK~il~~~~f~~p~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (329)
.+..+.-+++.....-+|-.+-... ..|..=.+.-+.++.+++..+...+ .+.+.... ....+| +.
T Consensus 7 ll~~i~aG~~l~~Q~~iN~qL~~~~--~spl~As~isf~vGt~~L~~l~l~~-~~~~~~a~-------~~~~pw----W~ 72 (150)
T COG3238 7 LLFAILAGALLPLQAAINGRLARYL--GSPLLASLISFLVGTVLLLILLLIK-QGHPGLAA-------VASAPW----WA 72 (150)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHHHh-cCCCchhh-------ccCCch----HH
Confidence 3444455566666666777666554 4577777778888777766665542 22111110 001122 22
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHHHh-HHHHHHHHHHHHHh----CcccCcchhhhhhHhhhhhhhe
Q 020212 125 LPLAVAYLLYMVVSVESVRGVNVPMYTTLRR-TTVAFTMIMEYFLA----GQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 125 ~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~-~~p~~~~i~~~~~~----~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
+.-|++-......+......+.+...+++.- -.-+.-+++..+-. +++++..++.+++++++|+.+.
T Consensus 73 ~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 73 WIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 3334555556666666777777766655443 44445555555433 4678999999999999996554
No 103
>PF15215 FDC-SP: Follicular dendritic cell secreted peptide
Probab=50.47 E-value=6.1 Score=26.51 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=14.7
Q ss_pred CCCCCchhhhhccccccc
Q 020212 16 PARGDEGEKERLLKGDEK 33 (329)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (329)
.++|+|+||..+.++|+-
T Consensus 3 V~~DQeREKRS~SDSDe~ 20 (67)
T PF15215_consen 3 VSQDQEREKRSISDSDEL 20 (67)
T ss_pred cchhhhhhhccccccccc
Confidence 467999999999887774
No 104
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=45.97 E-value=6.8 Score=35.15 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred cchhHHHHHHhHHHHHHHHHHHH-HhCcc-cCcchhhhhhHhhhhhhheeccC--cccchhhHHHHHHHHHHHHHHHHHH
Q 020212 145 VNVPMYTTLRRTTVAFTMIMEYF-LAGQK-YTPPVVGSVGLIILGAFVAGARD--LSFDFFGYAVVFLANITTAIYLATI 220 (329)
Q Consensus 145 ~~vs~~~~l~~~~p~~~~i~~~~-~~~e~-~~~~~~~~l~l~~~Gv~l~~~~~--~~~~~~G~~~~l~s~~~~A~~~v~~ 220 (329)
.+-+..+++.+...+.++|+-.+ ++|+| .-+.-.++++++++-..+...-. .+.-+.|+++.+++....-.-..++
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym 126 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYM 126 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666555554444433 34555 46666777777766554432222 2233467766555544433333333
Q ss_pred HHhhcCCCCChhhHHHHHHHHH
Q 020212 221 ARIGKSSGLNSFGLMWCNGVIC 242 (329)
Q Consensus 221 k~~~~~~~~~~~~~~~~~~~~~ 242 (329)
. ++++++-+-++++.++..+.
T Consensus 127 ~-lLr~~GAs~WtiLaFcLAF~ 147 (381)
T PF05297_consen 127 W-LLRELGASFWTILAFCLAFL 147 (381)
T ss_dssp ----------------------
T ss_pred H-HHHHhhhHHHHHHHHHHHHH
Confidence 2 55666667788877765443
No 105
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=41.73 E-value=1.7e+02 Score=26.23 Aligned_cols=101 Identities=19% Similarity=0.134 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc--cchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheecc--
Q 020212 119 KTLMHTLPLAVAYLLYMVVSVESVRG--VNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR-- 194 (329)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~al~~--~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~-- 194 (329)
.+++-+.++++....+++....-+.| .+.+..+..-+..-+...+....-..++.+++++...++.++-+......
T Consensus 52 ~~~~fL~~l~~G~~~gi~~~s~~i~~ll~~yp~~t~~fF~GLIlgSip~l~k~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 131 (257)
T PF04018_consen 52 INLKFLLPLGIGILIGILLFSKVISYLLENYPIPTYSFFFGLILGSIPFLYKEIKKFSPKSIIFFLLGAIIALLLSFLSS 131 (257)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHccc
Confidence 46677788887666666544433333 23333333333333333333322223445555554444443333222211
Q ss_pred --CcccchhhHHHHHHHHHHHHHHHHH
Q 020212 195 --DLSFDFFGYAVVFLANITTAIYLAT 219 (329)
Q Consensus 195 --~~~~~~~G~~~~l~s~~~~A~~~v~ 219 (329)
+.+.+....++.+++.+..+..+++
T Consensus 132 ~~~~~~~~~~~~~lf~~G~ia~~AMIl 158 (257)
T PF04018_consen 132 ATQSSLSNPSYLYLFLAGAIAACAMIL 158 (257)
T ss_pred cchhccCcchHHHHHHHHHHHHHHHhc
Confidence 1112334566677777777777665
No 106
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=40.48 E-value=96 Score=22.64 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=17.0
Q ss_pred cccccCCCCCCchhhhhcccccc
Q 020212 10 MLPVSEPARGDEGEKERLLKGDE 32 (329)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (329)
.||-....||+++|+.++..+..
T Consensus 21 vLP~gvrtq~E~g~vv~Gt~~sA 43 (85)
T PF07330_consen 21 VLPFGVRTQDEAGEVVPGTDPSA 43 (85)
T ss_pred HccCCccccCcCCCcCCCCCCCC
Confidence 47888888888888776665444
No 107
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=36.79 E-value=62 Score=24.62 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=37.7
Q ss_pred HHHHHHhhhhhcccchhHHHHHHh-HHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 132 LLYMVVSVESVRGVNVPMYTTLRR-TTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 132 ~~~~~~~~~al~~~~vs~~~~l~~-~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
++..-.+-.+.+.-+.+.=-+++= .+-..-..++.+++||++++....+.+.++.++.++
T Consensus 46 ~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 46 CLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 333334444455444444444443 233334566778899999999999999998887653
No 108
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=31.54 E-value=3.5e+02 Score=23.60 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHH---HHHHhCcccCcchhhhhhHhhhhh
Q 020212 121 LMHTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIM---EYFLAGQKYTPPVVGSVGLIILGA 188 (329)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~---~~~~~~e~~~~~~~~~l~l~~~Gv 188 (329)
+....|+=.|+....+.-.......+.+...+-..+..+|.... +.++.+.+.+....++-...++|.
T Consensus 102 lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~~ig~~~g~if~i~il~ss~i~r~~~~~~p~~LG~~Mi~~Gl 172 (224)
T PF09930_consen 102 LALSLPCPVCLTAIFFSIMLLAPSIGLSGWEIGLVLGLIFFILILLSSFIFRRLKKPYPIILGNFMIFLGL 172 (224)
T ss_pred hhhhcCchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 34455665677666666666777788888888777766665443 222223333444455555555554
No 109
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=31.46 E-value=62 Score=27.73 Aligned_cols=40 Identities=25% Similarity=0.231 Sum_probs=34.7
Q ss_pred HHHHHHHhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcc
Q 020212 285 NYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFD 325 (329)
Q Consensus 285 ~~~~~~~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~ 325 (329)
|+....++++.+|+..+-....+..+.-+++|+++|| .+.
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D-~~~ 106 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGD-RFM 106 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhcc-chh
Confidence 5555567999999999999999999999999999998 554
No 110
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=29.62 E-value=1.6e+02 Score=26.83 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=38.0
Q ss_pred HHHHHHHHH-HHHHhhhhhcccchhH-------HHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhh
Q 020212 125 LPLAVAYLL-YMVVSVESVRGVNVPM-------YTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFV 190 (329)
Q Consensus 125 ~~~~l~~~~-~~~~~~~al~~~~vs~-------~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l 190 (329)
+|....+.+ +..+++.|.+.+.+=. .++...+.=.+-.+++.+.++..+++..|++.++.+.|..+
T Consensus 238 vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~ 311 (330)
T KOG1583|consen 238 VPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLL 311 (330)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHH
Confidence 455544444 3456666666553211 11222233344556666666777788888888888888766
No 111
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=27.96 E-value=7.3e+02 Score=26.08 Aligned_cols=42 Identities=14% Similarity=-0.020 Sum_probs=31.1
Q ss_pred HHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 150 YTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 150 ~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
+.++..+.|+-++.++.+...+|.+...+.+.+..++|.+-.
T Consensus 13 a~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 13 AVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred HHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 355677889888888888877776666677777777787643
No 112
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=27.87 E-value=1.9e+02 Score=19.29 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=24.7
Q ss_pred hhhhHhhhhhhheeccCcccchhhHHHHHHHHHHHHHHHH
Q 020212 179 GSVGLIILGAFVAGARDLSFDFFGYAVVFLANITTAIYLA 218 (329)
Q Consensus 179 ~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~A~~~v 218 (329)
.+++.+..|+.+...++...+....+.+..-.+....+..
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~~~~~~~i~g~~~i~~Gi~~l~ 41 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDASLAALAIILGIWLIISGIFQLI 41 (72)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888777777766665555555555444444443
No 113
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.25 E-value=1.1e+02 Score=22.93 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=25.5
Q ss_pred HHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 162 MIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 162 ~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
..++.+.+||..++..+.+.+++..|+.+.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 456777899999999999999999888664
No 114
>PLN02776 prenyltransferase
Probab=22.38 E-value=6.5e+02 Score=23.56 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=20.9
Q ss_pred HhhccchhhHHHhhhhHHHHHHHHHHHhhCCcCcc
Q 020212 291 NTTLNSAVTQTICGNLKDLFTIGLGWILFGGLPFD 325 (329)
Q Consensus 291 ~i~~~sa~~~sv~~~l~~i~~~~~~~~~fge~~~~ 325 (329)
..|+.++... ++|..--.+..++||.--.+ .++
T Consensus 118 ~lKR~t~~~~-~lG~~~Ga~ppL~Gw~Avtg-~~~ 150 (341)
T PLN02776 118 PLKQIHPANT-WVGAVVGAIPPLMGWAAASG-QLD 150 (341)
T ss_pred hHccCCchhH-HHHHHHHHHHHHHHHHHHcC-CCC
Confidence 3677777764 66766665666777766654 443
No 115
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=20.84 E-value=4.5e+02 Score=21.10 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=22.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhh
Q 020212 199 DFFGYAVVFLANITTAIYLATIARIG 224 (329)
Q Consensus 199 ~~~G~~~~l~s~~~~A~~~v~~k~~~ 224 (329)
...+.+..++++..+.-|....||+-
T Consensus 119 ~i~~l~~~li~a~IwipYf~~S~RVK 144 (149)
T PF10754_consen 119 AIRELLRSLIAAAIWIPYFLRSKRVK 144 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 35688999999999999999999873
No 116
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.13 E-value=1.7e+02 Score=22.05 Aligned_cols=36 Identities=11% Similarity=0.268 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhhe
Q 020212 156 TTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVA 191 (329)
Q Consensus 156 ~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 191 (329)
..|++..++.-.++.|++....++.+.++++|++..
T Consensus 53 v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G 88 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIG 88 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 456677777777888888766688888888887653
Done!