Query 020212
Match_columns 329
No_of_seqs 158 out of 1665
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 13:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.3 2.2E-06 7.4E-11 65.4 7.5 66 128-193 37-103 (110)
2 2i68_A Protein EMRE; transmemb 98.1 3.5E-06 1.2E-10 66.6 5.7 66 128-193 37-103 (137)
3 2i68_A Protein EMRE; transmemb 95.1 0.027 9.3E-07 44.1 5.0 42 286-328 45-87 (137)
4 3b5d_A Multidrug transporter E 93.5 0.17 5.8E-06 37.9 6.2 40 287-327 46-86 (110)
5 4dve_A Biotin transporter BIOY 23.2 3E+02 0.01 22.3 8.7 93 119-216 15-115 (198)
6 3o7q_A L-fucose-proton symport 8.6 9.2E+02 0.032 20.7 12.0 14 59-72 279-293 (438)
7 1bba_A Bovine pancreatic polyp 7.8 1.6E+02 0.0055 16.8 1.2 12 7-18 3-14 (36)
8 1f8p_A Neuropeptide Y (PNPY); 7.6 2.4E+02 0.0081 16.2 1.9 13 7-19 3-15 (37)
9 1qbf_A Peptide YY, PYY; PP-fol 7.0 2.5E+02 0.0084 16.2 1.7 15 6-20 2-16 (37)
10 2ot8_C HnRNP M, heterogeneous 4.5 3.1E+02 0.011 14.8 1.0 17 17-33 3-19 (30)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.28 E-value=2.2e-06 Score=65.37 Aligned_cols=66 Identities=11% Similarity=0.220 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHH-HhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheec
Q 020212 128 AVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 128 ~l~~~~~~~~~~~al~~~~vs~~~~l-~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~ 193 (329)
.+++.+..++...++++.|++.+..+ ..+.|+++.+.+.+++||++++.++.++.++++|++....
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35678888899999999999999888 8999999999999999999999999999999999987544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.11 E-value=3.5e-06 Score=66.63 Aligned_cols=66 Identities=11% Similarity=0.220 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHH-HhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhhhheec
Q 020212 128 AVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (329)
Q Consensus 128 ~l~~~~~~~~~~~al~~~~vs~~~~l-~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~ 193 (329)
.+++.+..++.+.++++++++.+..+ ..+.|+++.++++++++|++++.++++++++++|+++...
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35678888999999999999988888 9999999999999999999999999999999999988543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=95.09 E-value=0.027 Score=44.14 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=26.4
Q ss_pred HHHHHHhhccchhhHHHh-hhhHHHHHHHHHHHhhCCcCccccC
Q 020212 286 YSIFLNTTLNSAVTQTIC-GNLKDLFTIGLGWILFGGLPFDFVS 328 (329)
Q Consensus 286 ~~~~~~i~~~sa~~~sv~-~~l~~i~~~~~~~~~fge~~~~~~~ 328 (329)
++...++++.++.....+ ..+.|+.++++|+++||| ++++.+
T Consensus 45 ~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE-~ls~~~ 87 (137)
T 2i68_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLPA 87 (137)
T ss_dssp HHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHH
Confidence 344568999999988777 899999999999999998 988764
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=93.50 E-value=0.17 Score=37.86 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=34.2
Q ss_pred HHHHHhhccchhhHHHh-hhhHHHHHHHHHHHhhCCcCcccc
Q 020212 287 SIFLNTTLNSAVTQTIC-GNLKDLFTIGLGWILFGGLPFDFV 327 (329)
Q Consensus 287 ~~~~~i~~~sa~~~sv~-~~l~~i~~~~~~~~~fge~~~~~~ 327 (329)
....++|+.+..+...+ ..+.++.++++|+++||| ++|+.
T Consensus 46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E-~~s~~ 86 (110)
T 3b5d_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLP 86 (110)
T ss_pred HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCC-CCCHH
Confidence 33557999999888777 899999999999999998 88865
No 5
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=23.22 E-value=3e+02 Score=22.30 Aligned_cols=93 Identities=14% Similarity=0.081 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh---hcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhh-hheec-
Q 020212 119 KTLMHTLPLAVAYLLYMVVSVES---VRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGA-FVAGA- 193 (329)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~a---l~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv-~l~~~- 193 (329)
++.|.+...+++-++.......+ +-..|++ ..++...+++.+.++..++=......-+++..+|. +++..
T Consensus 15 ~k~r~l~~~alfaAliavla~i~~Ipip~~pVP-----iTlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg~ 89 (198)
T 4dve_A 15 QKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVP-----IILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGN 89 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCC-----BCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcC-----ccHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCCC
Confidence 45566667776666655555442 2233333 23555566666655544444455666677788887 44322
Q ss_pred cCcc---cchhhHHHHHHHHHHHHHH
Q 020212 194 RDLS---FDFFGYAVVFLANITTAIY 216 (329)
Q Consensus 194 ~~~~---~~~~G~~~~l~s~~~~A~~ 216 (329)
+... -...|++++..-+..-+.+
T Consensus 90 gG~~~l~gPTgGYLiGF~~aA~v~G~ 115 (198)
T 4dve_A 90 GGAASFLGPSGGYRIAWLFTPFLIGF 115 (198)
T ss_dssp CCSGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred CchhHHhcchhHHHHHHHHHHHHHHH
Confidence 2111 2356898887766554444
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=8.63 E-value=9.2e+02 Score=20.68 Aligned_cols=14 Identities=0% Similarity=-0.159 Sum_probs=6.9
Q ss_pred HHHHHH-HhhcCCCC
Q 020212 59 VMFNKA-ALSSYNFP 72 (329)
Q Consensus 59 ~~~nK~-il~~~~f~ 72 (329)
.....+ .-+.+|++
T Consensus 279 ~~~~~~~~~~~~g~~ 293 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMT 293 (438)
T ss_dssp HHHHHHHHHHSTTCC
T ss_pred HHHHHHhhhccCCcc
Confidence 445556 33444655
No 7
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=7.82 E-value=1.6e+02 Score=16.81 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=5.6
Q ss_pred CCCcccccCCCC
Q 020212 7 KSPMLPVSEPAR 18 (329)
Q Consensus 7 ~~~~~~~~~~~~ 18 (329)
.+|.-|+.+.++
T Consensus 3 ~kP~~PG~dA~p 14 (36)
T 1bba_A 3 LEPEYPGDNATP 14 (36)
T ss_dssp CCCCCCSSCSST
T ss_pred CCCCCCCCCCCH
Confidence 345555544443
No 8
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=7.64 E-value=2.4e+02 Score=16.24 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=6.3
Q ss_pred CCCcccccCCCCC
Q 020212 7 KSPMLPVSEPARG 19 (329)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (329)
.+|.-|+.+.+++
T Consensus 3 ~kP~~Pg~~a~pE 15 (37)
T 1f8p_A 3 SKPDNPGEDAPAE 15 (37)
T ss_dssp CCCCCCCSSCTTT
T ss_pred CCCCCCCCCCCHH
Confidence 3455555554443
No 9
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=7.01 E-value=2.5e+02 Score=16.18 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=8.3
Q ss_pred CCCCcccccCCCCCC
Q 020212 6 SKSPMLPVSEPARGD 20 (329)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (329)
|.+|.-|+.+.++++
T Consensus 2 P~kP~~Pg~da~pEe 16 (37)
T 1qbf_A 2 PAKPEAPGEDASPEE 16 (37)
T ss_dssp CCCCCCCCCSSSSST
T ss_pred CCCCCCCCCCCCHHH
Confidence 345666666655544
No 10
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=4.51 E-value=3.1e+02 Score=14.76 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=10.3
Q ss_pred CCCCchhhhhccccccc
Q 020212 17 ARGDEGEKERLLKGDEK 33 (329)
Q Consensus 17 ~~~~~~~~~~~~~~~~~ 33 (329)
+.+.|..||+..+....
T Consensus 3 ~~~~e~rkEk~~Krggn 19 (30)
T 2ot8_C 3 PAQNEKRKEKNIKRGGN 19 (30)
T ss_pred ccccchhhccccccCCc
Confidence 34566677777665444
Done!