Query 020212
Match_columns 329
No_of_seqs 158 out of 1665
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 13:30:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020212.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020212hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 16.7 62 0.0045 15.5 2.6 18 201-218 3-20 (27)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 9.8 4.3E+02 0.031 21.5 23.2 53 160-214 241-294 (383)
3 d2h5na1 a.287.1.2 (A:1-132) Hy 7.2 1.5E+02 0.011 19.1 2.8 29 183-212 88-116 (132)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.4 4.6E+02 0.034 19.9 6.1 62 123-188 4-65 (248)
5 d3d4ub1 g.9.1.3 (B:1-37) Carbo 5.0 66 0.0048 16.6 -0.1 9 11-19 11-19 (37)
6 d1uptb_ a.193.1.1 (B:) Golgi a 2.4 1.8E+02 0.013 17.0 0.0 20 162-181 11-30 (58)
7 d2c0sa1 a.30.7.1 (A:1-57) Hypo 2.0 6.6E+02 0.048 14.3 2.2 21 64-84 19-39 (57)
8 d2nn6g1 b.40.4.5 (G:107-194) S 1.9 5.2E+02 0.038 15.9 2.0 18 4-21 27-44 (88)
9 d1m0ka_ f.13.1.1 (A:) Bacterio 1.7 1.3E+03 0.098 16.4 6.1 10 156-165 85-94 (227)
10 d2iuba2 f.17.3.1 (A:286-349) M 1.7 8.1E+02 0.059 13.6 3.4 54 119-172 4-64 (64)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.65 E-value=62 Score=15.50 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 020212 201 FGYAVVFLANITTAIYLA 218 (329)
Q Consensus 201 ~G~~~~l~s~~~~A~~~v 218 (329)
.|.+..-++.++||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 578888888888888843
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=9.85 E-value=4.3e+02 Score=21.53 Aligned_cols=53 Identities=9% Similarity=-0.115 Sum_probs=24.6
Q ss_pred HHHHHHHHHhCcccCcchhhhhhHhhhhhhheeccCcccchh-hHHHHHHHHHHHH
Q 020212 160 FTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARDLSFDFF-GYAVVFLANITTA 214 (329)
Q Consensus 160 ~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~-G~~~~l~s~~~~A 214 (329)
++.++...+.++|.+......- +++|.+-.+.+..-.++. ..+.++++++..-
T Consensus 241 ~~~~~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~ 294 (383)
T d1u7ga_ 241 LGWIFGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 294 (383)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHH
Confidence 3333333455666766554432 234554433333333444 3566666554433
No 3
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=7.15 E-value=1.5e+02 Score=19.14 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=21.7
Q ss_pred HhhhhhhheeccCcccchhhHHHHHHHHHH
Q 020212 183 LIILGAFVAGARDLSFDFFGYAVVFLANIT 212 (329)
Q Consensus 183 l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~ 212 (329)
...+|+++++-+|...|-. .+|.+++.+|
T Consensus 88 asylgvimasdgdiddnel-alwtlistlc 116 (132)
T d2h5na1 88 ASYLGVIMASDGDIDDNEL-ALWTLISTLC 116 (132)
T ss_dssp HHHHHHHSCBTTBCCHHHH-HHHHHHHHHH
T ss_pred HHHhhheeccCCCCCccHh-HHHHHHHHHh
Confidence 3567899998888877643 4778888777
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.42 E-value=4.6e+02 Score=19.90 Aligned_cols=62 Identities=18% Similarity=0.000 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHhHHHHHHHHHHHHHhCcccCcchhhhhhHhhhhh
Q 020212 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGA 188 (329)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~al~~~~vs~~~~l~~~~p~~~~i~~~~~~~e~~~~~~~~~l~l~~~Gv 188 (329)
++..+|++.++..+.-...+..-+...+. ..-+.+.++.++++.+|.-+.|++.=.+++..+
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~ 65 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGL 65 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHHHH
Confidence 45666776666655555555444443333 334566677788888888777776544444333
No 5
>d3d4ub1 g.9.1.3 (B:1-37) Carboxypeptidase inhibitor {Tick (Rhipicephalus bursa) [TaxId: 67831]}
Probab=5.01 E-value=66 Score=16.56 Aligned_cols=9 Identities=33% Similarity=0.479 Sum_probs=5.8
Q ss_pred ccccCCCCC
Q 020212 11 LPVSEPARG 19 (329)
Q Consensus 11 ~~~~~~~~~ 19 (329)
+|.|++|++
T Consensus 11 ~p~s~cp~e 19 (37)
T d3d4ub1 11 LPQSDCPQE 19 (37)
T ss_dssp ECGGGSCGG
T ss_pred CccccCCHh
Confidence 567777754
No 6
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.38 E-value=1.8e+02 Score=17.01 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=11.5
Q ss_pred HHHHHHHhCcccCcchhhhh
Q 020212 162 MIMEYFLAGQKYTPPVVGSV 181 (329)
Q Consensus 162 ~i~~~~~~~e~~~~~~~~~l 181 (329)
+++.++.++|..+..++++.
T Consensus 11 vLfeYMmG~E~~tlaKVi~a 30 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITT 30 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHHH
Confidence 35566666666665555443
No 7
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=1.95 E-value=6.6e+02 Score=14.31 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=15.7
Q ss_pred HHhhcCCCCchHHHHHHHHHH
Q 020212 64 AALSSYNFPCANVITLLQMIS 84 (329)
Q Consensus 64 ~il~~~~f~~p~~l~~~r~~~ 84 (329)
++...|||+.+-++.+.|=+=
T Consensus 19 ~Lv~~YGf~h~kvl~~SQELD 39 (57)
T d2c0sa1 19 YLVEKYGFTHHKVISFSQELD 39 (57)
T ss_dssp HHHHHTCTTSHHHHHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHHHH
Confidence 345678999998888887753
No 8
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.91 E-value=5.2e+02 Score=15.89 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=12.8
Q ss_pred CCCCCCcccccCCCCCCc
Q 020212 4 NSSKSPMLPVSEPARGDE 21 (329)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (329)
+|+...+||.++-+...+
T Consensus 27 ~s~~~a~L~~~~f~g~~k 44 (88)
T d2nn6g1 27 GGSEPASLSYLSFEGATK 44 (88)
T ss_dssp SSSSCCCEESCSSSCCSS
T ss_pred CCCeeEEEeHHHcCcccc
Confidence 577888899888764433
No 9
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=1.70 E-value=1.3e+03 Score=16.44 Aligned_cols=10 Identities=20% Similarity=0.152 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 020212 156 TTVAFTMIME 165 (329)
Q Consensus 156 ~~p~~~~i~~ 165 (329)
++|+...-+.
T Consensus 85 TtPLll~~l~ 94 (227)
T d1m0ka_ 85 TTPLLLLDLA 94 (227)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5565554444
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=1.66 E-value=8.1e+02 Score=13.62 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhhhhcccchhH------HHHHHhHHHHHHHHHHHHHhCcc
Q 020212 119 KTLMHTLPLA-VAYLLYMVVSVESVRGVNVPM------YTTLRRTTVAFTMIMEYFLAGQK 172 (329)
Q Consensus 119 ~~~~~~~~~~-l~~~~~~~~~~~al~~~~vs~------~~~l~~~~p~~~~i~~~~~~~e~ 172 (329)
+..|.+-.++ ++.-.+.+.+.++...-..+. +-.+-.....++.+..+++.++|
T Consensus 4 ~~mk~lT~it~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~f~rkk 64 (64)
T d2iuba2 4 EVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKKK 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhccC
Done!