BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020213
(329 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 18/202 (8%)
Query: 107 ILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAR 166
+L+ E+ + +L F + +G+ + QLG + NP ++ +E+ L V +L S
Sbjct: 167 LLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGEELEA-LETRVAYLKSKKFG- 224
Query: 167 EGMIGKVLVKHPFIMGYSV---DNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNK 223
I +++ + P+++ +SV DNRL F +GL + + ++FP +L
Sbjct: 225 NAEITQMVSRAPYLLLFSVERLDNRL---GFFKNELGLSVKKTKDLVIRFPRLLTGK--- 278
Query: 224 ILSPNFTFLKRC----GFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEV 279
L P L+ C GF ++ + P IL S K L +L +MG + +
Sbjct: 279 -LEPVKENLQVCQVEFGFERNEVQQIAFKTPKILTAS-KKRLRQTFDYLHNIMGIPHNML 336
Query: 280 ADYPDFFRHGLKKRLELRHRLL 301
+P F L R++ RH L
Sbjct: 337 TRFPQVFNSKL-LRIKERHMFL 357
Score = 34.7 bits (78), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 19/233 (8%)
Query: 12 VIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKI 71
++ FLKD G D + + + G E + AYLKS ++ +VS+ P +
Sbjct: 179 ILLFLKDVGIEDNQLGPFLTKNPYILGEELEALETRVAYLKSKKFGNAEITQMVSRAPYL 238
Query: 72 LTLGLNEKLVPMVECLAT-LGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPE 130
L + E+L + LG + + RFP +L+ +E L G
Sbjct: 239 LLFSV-ERLDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQVCQVEFGFER 297
Query: 131 KQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLR 190
++ ++ P++++ S + +L +T D+L ++ G+ +L + P + + R++
Sbjct: 298 NEVQQIAFKTPKILTAS-KKRLRQTFDYLHNIM----GIPHNMLTRFPQVFNSKL-LRIK 351
Query: 191 PTSEFLKSVGLKELDL---------QVVAVKFPEVLCRDVNKILSPNFT-FLK 233
FL +G + D Q+V++ EV C ++ K +F FLK
Sbjct: 352 ERHMFLIFLGRAQYDPTKPSYISLDQLVSLP-DEVFCTEIAKASMQDFEKFLK 403
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 10/192 (5%)
Query: 113 EEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGK 172
E+ + +L F + +G+ + QLG + N + S +E+ L V +L S ++ + +
Sbjct: 185 EKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKAD-VAQ 242
Query: 173 VLVKHPFIMGYSV---DNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNF 229
++ K PF++ +SV DNRL F K + L + + V+ P +L + +
Sbjct: 243 MVRKAPFLLNFSVERLDNRL---GFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMK 299
Query: 230 TFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHG 289
+ GF +I ++ P +L + K L F+ VM + +P F
Sbjct: 300 VYRLELGFKHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTR 358
Query: 290 LKKRLELRHRLL 301
L K E RH L
Sbjct: 359 LFKVKE-RHLFL 369
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 9/177 (5%)
Query: 113 EEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGK 172
E+ + +L F + LG+ + QLG + N + S +E+ L V +L S ++ I +
Sbjct: 180 EKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTD-IAR 237
Query: 173 VLVKHPFIMGYSV---DNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNF 229
++ PF++ +SV DNRL F K + L + + V+ P +L + +
Sbjct: 238 MVKNAPFLLSFSVERLDNRL---GFFQKELELNVKKTRDLVVRLPRLLTGSLEPVKENMK 294
Query: 230 TFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFF 286
+ GF +I +V P +L + K L ++ VM + +P F
Sbjct: 295 VYHLELGFKHNEIQHMVIKIPKMLTAN-KRKLTEIFDYVHNVMNIPHHIIVKFPQLF 350
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 8/176 (4%)
Query: 50 YLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILS 109
+LK +G+ + +L ++K I + L E L V L + ++A + P +LS
Sbjct: 189 FLKDLGLEDNQLGPFLTKNYAIFSEDL-ENLKTRVAYLQSKNFSKTDIARMVKNAPFLLS 247
Query: 110 HSVEEKLCPLLAFFQ-ALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREG 168
SV E+L L FFQ L + K+ +++ PRL++ S+E + LG +
Sbjct: 248 FSV-ERLDNRLGFFQKELELNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHLELGF-KHN 305
Query: 169 MIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKI 224
I +++K P ++ N+ + T F + + ++ VKFP++ V KI
Sbjct: 306 EIQHMVIKIPKML---TANKRKLTEIFDYVHNVMNIPHHII-VKFPQLFNTRVFKI 357
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 16/212 (7%)
Query: 78 EKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMI 137
+KLV + L+ + P +VA+ + R + E+ + +L F + LG+ + QLG +
Sbjct: 149 QKLVQLGVDLSKIEKHP-DVANLLLRL------NFEKDIKQILLFLKDLGLEDNQLGPFL 201
Query: 138 LLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSV---DNRLRPTSE 194
N + S +E+ L V +L S ++ I ++ PF++ +SV DNRL
Sbjct: 202 TKNYAIFSEDLEN-LKTRVAYLQSKNFSKTD-IACMVKNAPFLLSFSVERLDNRL---GF 256
Query: 195 FLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILI 254
F K + L + + V+ P +L + + + GF +I +V P +L
Sbjct: 257 FQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPKMLT 316
Query: 255 KSIKNSLEPRIKFLVEVMGRQIDEVADYPDFF 286
+ K L ++ VM + +P F
Sbjct: 317 AN-KRKLTETFDYVHNVMNIPHHIIVKFPQVF 347
>sp|Q7NUY8|TIG_CHRVO Trigger factor OS=Chromobacterium violaceum (strain ATCC 12472 /
DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC
9757) GN=tig PE=3 SV=1
Length = 435
Score = 35.8 bits (81), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 27/130 (20%)
Query: 156 VDFLTSL-GLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS-VGLKELDLQVVAVKF 213
+DF ++ G+A EG + PF++G + +EF VG KE D++ V V F
Sbjct: 167 IDFKGAIDGVAFEGGSSE---NFPFVLGQG-----QMLAEFEAGIVGAKEGDIKTVEVNF 218
Query: 214 PE---------------VLCRDVNKILSP--NFTFLKRCGFADGQIAALVAAYPPILIKS 256
PE +L ++V + P N F K G +DG + + + +
Sbjct: 219 PEDYHGKDVAGKTAVFEILVKNVAEATLPEVNEEFAKALGISDGDVEKMRGEIRKNVERE 278
Query: 257 IKNSLEPRIK 266
+K L+ RIK
Sbjct: 279 VKRRLQARIK 288
>sp|Q49AM1|MTER3_HUMAN mTERF domain-containing protein 3, mitochondrial OS=Homo sapiens
GN=MTERFD3 PE=1 SV=2
Length = 385
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 125/290 (43%), Gaps = 42/290 (14%)
Query: 22 NDRTIHDMFK------RCKRLQG---VEKDRAADNWA-YLKSIGILERKLPNVVSKCPKI 71
N RT+ ++K + +RL+G +E + + A L+ +G E + +++ +CP+
Sbjct: 45 NTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEA 104
Query: 72 L-----TLGLNEKLVPMVECLATLGTKPYEVASAITRFPP---ILSHSVEEKLCPLLAFF 123
+ + KL +V E+ I +FP + +KL + FF
Sbjct: 105 IVCSPTAVNTQRKLWQLV------CKNEEELIKLIEQFPESFFTIKDQENQKLN--VQFF 156
Query: 124 QALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTS----LGLAREGM---IGKVLVK 176
Q LG+ + R++ P + +E K + V L +G + M + K+L +
Sbjct: 157 QELGLKNVVISRLLTAAPNVFHNPVE-KNKQMVRILQESYLDVGGSEANMKVWLLKLLSQ 215
Query: 177 HPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLK--- 233
+PFI+ S ++ T EFL+ G ++ + K L + + + + +F K
Sbjct: 216 NPFILLNS-PTAIKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAF 274
Query: 234 RCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYP 283
+C D + LV P +L S+ LE R++ L+ G I ++ + P
Sbjct: 275 KC--TDHDLKQLVLKCPALLYYSVP-VLEERMQGLLR-EGISIAQIRETP 320
>sp|C5BCJ5|TIG_EDWI9 Trigger factor OS=Edwardsiella ictaluri (strain 93-146) GN=tig PE=3
SV=1
Length = 433
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 205 DLQVVAVKFPEVLCRDVNKILSPNFT--FLKRCGFADGQIAALVAAYPPILIKSIKNSLE 262
+L+ A KF +++ + V + P T F+KR G ADG + L A + + +KN++
Sbjct: 225 NLKGKAAKF-DIVLKKVEERELPEMTAEFIKRFGVADGSLDGLKAEVRKNMTRELKNAVR 283
Query: 263 PRIKFLV 269
RIK V
Sbjct: 284 NRIKAQV 290
>sp|Q7Z6M4|MTER2_HUMAN mTERF domain-containing protein 2 OS=Homo sapiens GN=MTERFD2 PE=1
SV=3
Length = 381
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 143 LISYSIESKLTETVDFLTS---LGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSV 199
L+S + L + +D ++ LGL E + VL K P ++ + ++R S +L+ +
Sbjct: 112 LLSVRRGASLQQLLDIISEFILLGLNPEP-VCVVLKKSPQLLKLPI-MQMRKRSSYLQKL 169
Query: 200 GLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKN 259
GL E L+ V PE+ I ++C F Q+ ++ + P +L + +
Sbjct: 170 GLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-G 228
Query: 260 SLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIY 307
LE + ++ MG + ++ ++ ++ L K +KQR+IY
Sbjct: 229 QLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLTK--------IKQRHIY 267
>sp|Q8ZW89|AROE_PYRAE Shikimate dehydrogenase OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=aroE
PE=3 SV=1
Length = 262
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 110 HSVEEKLCPLLAFFQALGVPEKQLG---RMILLNPRLISYSIESKLTETVDFLTSLGL-A 165
H+ K + A + A+ VP+++LG ++ LN R + +I K E V FL +L A
Sbjct: 20 HTASFKALGINAVYIAVDVPKEELGCFAQIARLNFRGFNVTIPHK-EEVVKFLDALSAEA 78
Query: 166 RE-GMIGKVLVKHPFIMGYSVD 186
R G + VLV+ ++GY+ D
Sbjct: 79 RAIGAVNTVLVERNLMVGYNTD 100
>sp|Q9V496|APLP_DROME Apolipophorins OS=Drosophila melanogaster GN=Rfabg PE=1 SV=2
Length = 3351
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 103/249 (41%), Gaps = 29/249 (11%)
Query: 89 TLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSI 148
TL ++PY A I + + +EK F A G KQ+ + +LL PR I +
Sbjct: 2984 TLDSRPYRKACDI----ALAKVAEKEKEATACTFALAYGSAVKQINKWVLLPPRCIKCAG 3039
Query: 149 ESKLTETVD-FLTSLGLAREGMIGKVLVK-HPFIMGYSVDNRLRPTSEFLKSVGLKELDL 206
+ + D F L + ++ V + P ++ + + E L+S G ++ +
Sbjct: 3040 PAGQHDFGDEFTVKLPNNKVDVVFVVDINVTPGVLSNLIAPAINDIRESLRSRGFSDVQV 3099
Query: 207 QVVAV----KFPEVLCRDVNKI-LSPNFTFLKRCG---FADGQIAALVAAYPPILIKSIK 258
V+ ++P +L D KI N +K G F D + ++ I I
Sbjct: 3100 GVIVFEETKRYPALLTSDGGKINYKGNVADVKLAGIKSFCDNCVEQIITEKR---ILDIY 3156
Query: 259 NSLEPRIKFLVEVMGRQIDEVA-----DYPDFFRHGLKKR-LELRHRLLKQRNIYCSLSE 312
NSL K +V+ + Q DE A DYP FR G K + +R L+ +N + +
Sbjct: 3157 NSL----KEIVKGIAPQADEKAFQLALDYP--FRAGAAKSIIGVRSDSLEYKNWWKFVRA 3210
Query: 313 MLDCNAKKF 321
L + KF
Sbjct: 3211 QLTGSITKF 3219
>sp|A4H7G5|JBP2_LEIBR Bifunctional helicase and thymine dioxygenase JBP2 OS=Leishmania
braziliensis GN=JBP2 PE=3 SV=1
Length = 1098
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 51 LKSIG-ILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFP-PIL 108
L ++G I+ER N S C +T+GL + LV + C + L P A + P PI+
Sbjct: 548 LAALGFIVERT--NKQSGCVVAMTMGLGKTLVALTLCFSHLHLAPQ--ADILILTPKPII 603
Query: 109 SHSVEEK 115
SH V+EK
Sbjct: 604 SHWVDEK 610
>sp|Q8BVN4|MTER2_MOUSE mTERF domain-containing protein 2 OS=Mus musculus GN=Mterfd2 PE=1
SV=1
Length = 346
Score = 31.6 bits (70), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 20 GFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTL 74
G N + + K+ +L + + +YL+ +G+ E KL V+S CP++ T+
Sbjct: 135 GLNPEPVFNALKKNPQLLKLSSMQMKRRSSYLRKLGLGEGKLKRVLSVCPEVFTM 189
>sp|Q4G078|MTER2_RAT mTERF domain-containing protein 2 OS=Rattus norvegicus GN=Mterfd2
PE=2 SV=1
Length = 347
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 20 GFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTL 74
G N + K+ +L + + +YL+ +G+ E KL V+S CPK+ T+
Sbjct: 135 GLNPEPVFMALKKNPQLLKLSATQMKRRSSYLRKLGLGEGKLKRVLSVCPKVFTM 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,879,491
Number of Sequences: 539616
Number of extensions: 4776893
Number of successful extensions: 14140
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 14112
Number of HSP's gapped (non-prelim): 28
length of query: 329
length of database: 191,569,459
effective HSP length: 118
effective length of query: 211
effective length of database: 127,894,771
effective search space: 26985796681
effective search space used: 26985796681
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)