Query 020213
Match_columns 329
No_of_seqs 142 out of 1391
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 13:30:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 3E-54 1E-58 398.7 21.4 312 7-328 17-342 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 3.1E-45 1E-49 328.0 16.9 242 81-328 6-258 (270)
3 3mva_O Transcription terminati 100.0 5.9E-43 2E-47 323.1 17.9 285 3-301 45-342 (343)
4 4fp9_B Mterf domain-containing 100.0 2.5E-37 8.6E-42 281.3 15.9 204 115-328 45-262 (335)
5 3m66_A Mterf3, mterf domain-co 100.0 3.1E-37 1.1E-41 276.0 14.5 243 44-298 5-255 (270)
6 4fp9_B Mterf domain-containing 99.9 2.7E-27 9.4E-32 215.3 15.2 182 78-274 44-227 (335)
7 4fzv_B Mterf domain-containing 99.6 9.1E-15 3.1E-19 113.7 12.6 169 152-326 33-215 (239)
8 4fzv_B Mterf domain-containing 99.1 1.1E-09 3.7E-14 85.3 11.8 150 78-237 31-182 (239)
9 3ugm_A TAL effector avrbs3/PTH 94.6 0.11 3.9E-06 50.4 8.7 14 19-32 253-266 (1047)
10 3ugm_A TAL effector avrbs3/PTH 94.6 0.079 2.7E-06 51.5 7.5 13 19-31 287-299 (1047)
11 4ae4_A Ubiquitin-associated pr 92.6 0.76 2.6E-05 34.6 8.5 98 10-124 9-112 (118)
12 4ae4_A Ubiquitin-associated pr 92.0 2.3 7.9E-05 31.9 10.6 99 81-198 9-113 (118)
13 4hpz_A Dtale2; DNA binding pro 91.4 0.78 2.7E-05 41.2 8.5 112 126-247 140-254 (463)
14 1oqy_A HHR23A, UV excision rep 90.8 0.23 7.9E-06 45.3 4.7 42 9-58 168-209 (368)
15 1oqy_A HHR23A, UV excision rep 90.5 0.33 1.1E-05 44.3 5.5 24 152-176 168-191 (368)
16 4hpz_A Dtale2; DNA binding pro 90.4 0.8 2.7E-05 41.1 7.6 124 116-249 163-290 (463)
17 3v6t_A DHAX3; tandem repeats, 90.2 1.4 4.8E-05 40.0 9.0 46 19-66 65-111 (499)
18 3v6t_A DHAX3; tandem repeats, 87.2 3.2 0.00011 37.7 9.2 119 14-140 93-215 (499)
19 3ff5_A PEX14P, peroxisomal bio 85.0 0.86 3E-05 29.0 3.2 24 225-248 30-53 (54)
20 3ff5_A PEX14P, peroxisomal bio 84.6 1.8 6.1E-05 27.5 4.6 24 80-103 30-53 (54)
21 2w84_A Peroxisomal membrane pr 76.7 2 6.9E-05 28.8 2.9 24 225-248 35-58 (70)
22 2w84_A Peroxisomal membrane pr 76.3 4.3 0.00015 27.2 4.4 26 79-104 34-59 (70)
23 2lbc_A Ubiquitin carboxyl-term 75.9 10 0.00034 28.6 7.2 94 11-124 5-114 (126)
24 3idw_A Actin cytoskeleton-regu 75.9 3.7 0.00013 27.6 4.0 53 154-211 4-59 (72)
25 2cos_A Serine/threonine protei 72.7 5.4 0.00019 25.1 4.0 44 9-58 9-52 (54)
26 1ify_A HHR23A, UV excision rep 70.7 6.4 0.00022 24.3 4.1 38 9-53 8-45 (49)
27 3e3v_A Regulatory protein RECX 69.1 16 0.00055 29.2 7.3 138 12-176 24-162 (177)
28 2knz_A Ubiquilin-4; cytoplasm, 68.1 11 0.00038 23.6 4.9 38 12-56 14-52 (53)
29 1ify_A HHR23A, UV excision rep 66.8 5.2 0.00018 24.7 3.0 38 225-270 8-45 (49)
30 2g3q_A Protein YBL047C; endocy 63.1 4.5 0.00016 24.1 2.2 23 227-249 6-28 (43)
31 1vg5_A RSGI RUH-014, rhomboid 63.1 19 0.00064 24.3 5.5 41 7-54 27-67 (73)
32 2knz_A Ubiquilin-4; cytoplasm, 62.3 14 0.00048 23.1 4.5 40 78-125 9-49 (53)
33 3dfg_A Xcrecx, regulatory prot 61.5 56 0.0019 25.5 10.3 137 11-178 22-160 (162)
34 2bwb_A Ubiquitin-like protein 60.6 15 0.00051 22.3 4.3 41 149-197 4-44 (46)
35 1z96_A DNA-damage, UBA-domain 60.6 8.2 0.00028 22.3 3.0 24 226-249 5-28 (40)
36 2jy5_A Ubiquilin-1; UBA, alter 59.9 8 0.00027 24.2 3.0 26 222-247 9-35 (52)
37 1wr1_B Ubiquitin-like protein 58.7 18 0.00062 23.2 4.6 43 148-198 13-55 (58)
38 2dah_A Ubiquilin-3; UBA domain 58.0 18 0.00061 22.8 4.4 41 151-199 8-48 (54)
39 3d5l_A Regulatory protein RECX 57.7 49 0.0017 27.3 8.5 138 12-176 67-205 (221)
40 1wgn_A UBAP1, ubiquitin associ 54.6 8.7 0.0003 25.0 2.5 37 11-54 21-57 (63)
41 2d9s_A CBL E3 ubiquitin protei 53.7 15 0.00052 23.0 3.4 23 225-247 9-31 (53)
42 2jy5_A Ubiquilin-1; UBA, alter 53.3 27 0.00093 21.7 4.7 27 77-103 9-36 (52)
43 2ooa_A E3 ubiquitin-protein li 53.2 36 0.0012 21.2 5.0 26 79-104 10-35 (52)
44 1veg_A NEDD8 ultimate buster-1 51.9 26 0.00087 24.3 4.7 38 10-54 30-67 (83)
45 1wji_A Tudor domain containing 51.7 11 0.00037 24.7 2.7 38 226-271 10-47 (63)
46 2ztd_A Holliday junction ATP-d 51.2 61 0.0021 26.7 7.9 58 7-66 81-141 (212)
47 2ooa_A E3 ubiquitin-protein li 50.7 34 0.0012 21.3 4.6 27 6-32 8-34 (52)
48 2cp8_A NEXT to BRCA1 gene 1 pr 50.6 39 0.0013 21.3 5.0 43 149-199 6-48 (54)
49 1vg5_A RSGI RUH-014, rhomboid 50.2 9.4 0.00032 25.9 2.3 38 225-270 29-66 (73)
50 2xzm_O RPS13E; ribosome, trans 48.5 34 0.0012 26.5 5.4 81 55-138 12-95 (153)
51 3oq9_A Tumor necrosis factor r 48.4 35 0.0012 23.7 5.1 40 10-52 13-52 (86)
52 2ekk_A UBA domain from E3 ubiq 48.4 12 0.0004 22.8 2.3 24 226-249 10-33 (47)
53 2dak_A Ubiquitin carboxyl-term 47.0 28 0.00097 22.5 4.2 41 7-54 7-47 (63)
54 2eap_A Lymphocyte cytosolic pr 47.0 12 0.0004 26.3 2.3 24 8-33 23-46 (90)
55 2dak_A Ubiquitin carboxyl-term 46.5 17 0.00056 23.7 3.0 41 225-273 9-49 (63)
56 2oo9_A E3 ubiquitin-protein li 45.7 15 0.00051 22.3 2.3 23 225-247 4-26 (46)
57 1veg_A NEDD8 ultimate buster-1 45.3 17 0.00057 25.3 3.0 40 226-273 30-69 (83)
58 1vej_A Riken cDNA 4931431F19; 45.2 33 0.0011 23.2 4.3 42 149-198 26-67 (74)
59 1wji_A Tudor domain containing 45.2 48 0.0016 21.5 5.1 41 9-56 9-49 (63)
60 2crn_A Ubash3A protein; compac 45.2 39 0.0013 22.0 4.7 41 9-55 9-49 (64)
61 1uxc_A FRUR (1-57), fructose r 44.9 38 0.0013 22.0 4.6 52 14-65 5-56 (65)
62 1wiv_A UBP14, ubiquitin-specif 44.7 18 0.00061 24.4 3.0 37 226-270 30-66 (73)
63 1dv0_A DNA repair protein HHR2 44.3 6.4 0.00022 24.1 0.6 25 226-250 5-29 (47)
64 1wiv_A UBP14, ubiquitin-specif 44.1 51 0.0018 22.1 5.3 39 9-54 29-67 (73)
65 2xzm_O RPS13E; ribosome, trans 43.7 41 0.0014 26.1 5.1 30 37-66 28-57 (153)
66 3dfg_A Xcrecx, regulatory prot 43.2 1.1E+02 0.0039 23.6 8.9 87 80-176 20-107 (162)
67 2dna_A Unnamed protein product 43.1 45 0.0015 22.1 4.7 43 148-198 15-57 (67)
68 2dkl_A Trinucleotide repeat co 43.0 40 0.0014 23.4 4.7 41 11-58 23-63 (85)
69 2cpw_A CBL-interacting protein 39.6 54 0.0018 21.3 4.7 39 11-55 21-59 (64)
70 3c1d_A Protein ORAA, regulator 39.4 1.3E+02 0.0045 23.2 8.5 138 11-175 10-155 (159)
71 4ayb_F DNA-directed RNA polyme 39.3 6.4 0.00022 29.2 0.0 73 24-101 32-104 (113)
72 3u5c_N S27A, YS15, 40S ribosom 38.5 22 0.00076 27.5 3.0 83 55-140 10-95 (151)
73 2juj_A E3 ubiquitin-protein li 37.0 26 0.0009 22.1 2.6 23 225-247 7-29 (56)
74 1ich_A TNF-1, tumor necrosis f 36.7 50 0.0017 24.3 4.6 24 11-34 27-50 (112)
75 3u5c_N S27A, YS15, 40S ribosom 36.7 41 0.0014 26.0 4.2 31 37-67 26-56 (151)
76 2cwb_A Chimera of immunoglobul 36.3 57 0.002 23.8 4.8 43 150-200 64-106 (108)
77 2dag_A Ubiquitin carboxyl-term 33.7 27 0.00092 23.6 2.5 41 226-273 10-50 (74)
78 1whc_A RSGI RUH-027, UBA/UBX 3 33.7 94 0.0032 20.1 5.1 40 9-54 9-48 (64)
79 2dai_A Ubadc1, ubiquitin assoc 29.9 41 0.0014 23.2 3.0 40 226-273 30-69 (83)
80 3ezq_A Tumor necrosis factor r 29.3 45 0.0015 24.6 3.3 24 11-34 22-45 (115)
81 3ezq_B Protein FADD; apoptosis 29.3 84 0.0029 23.3 4.9 25 10-34 18-42 (122)
82 2c35_A Human RPB4, DNA-directe 29.0 14 0.00046 29.0 0.4 56 40-101 86-141 (152)
83 3e3v_A Regulatory protein RECX 29.0 2.1E+02 0.0072 22.5 8.3 20 229-248 143-162 (177)
84 1uxc_A FRUR (1-57), fructose r 28.6 1E+02 0.0035 19.8 4.7 17 89-105 9-25 (65)
85 1q08_A Zn(II)-responsive regul 26.6 44 0.0015 23.4 2.8 21 228-248 8-28 (99)
86 3j20_Q 30S ribosomal protein S 26.3 44 0.0015 26.1 2.8 37 67-104 21-57 (158)
87 1ixs_A Holliday junction DNA h 26.1 39 0.0013 21.8 2.2 24 10-33 18-41 (62)
88 1b0n_B Protein (SINI protein); 25.1 66 0.0023 20.5 3.0 24 226-249 13-39 (57)
89 1go3_F DNA-directed RNA polyme 24.6 71 0.0024 23.1 3.6 46 25-70 33-78 (107)
90 3h5t_A Transcriptional regulat 24.4 83 0.0028 27.5 4.9 63 1-66 1-64 (366)
91 1vek_A UBP14, ubiquitin-specif 23.7 62 0.0021 22.3 3.0 41 226-273 30-70 (84)
92 2es9_A Putative cytoplasmic pr 22.9 58 0.002 22.9 2.6 86 188-290 12-99 (115)
93 3ayh_A DNA-directed RNA polyme 22.5 38 0.0013 25.8 1.8 48 44-106 56-103 (136)
94 2l8n_A Transcriptional repress 22.2 87 0.003 20.4 3.4 50 11-63 11-60 (67)
95 3d5l_A Regulatory protein RECX 21.7 1.8E+02 0.0061 23.8 6.1 112 10-140 79-206 (221)
96 1y14_A B32, RPB4, DNA-directed 21.5 21 0.00073 28.8 0.2 31 40-70 122-152 (187)
97 1wj7_A Hypothetical protein (R 21.1 57 0.0019 23.6 2.4 25 225-249 39-64 (104)
98 1oyi_A Double-stranded RNA-bin 20.8 30 0.001 23.9 0.8 46 4-56 14-59 (82)
99 3h0g_D DNA-directed RNA polyme 20.5 17 0.00059 27.7 -0.5 27 42-69 72-98 (135)
100 2ve7_C Kinetochore protein NUF 20.1 3.1E+02 0.011 23.0 7.3 24 299-322 99-123 (250)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=3e-54 Score=398.69 Aligned_cols=312 Identities=21% Similarity=0.319 Sum_probs=284.0
Q ss_pred CCcchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchHHHHHH
Q 020213 7 QNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVEC 86 (329)
Q Consensus 7 ~~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~ 86 (329)
..+++++++|.++|++.++ +++.+|.++..++++.+++++||.++|++++++.+++.++|.+|..+. +++.++++|
T Consensus 17 ~~~~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~f 92 (343)
T 3mva_O 17 LKNEDLLKNLLTMGVDIDM---ARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDL 92 (343)
T ss_dssp ---CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCHHH---HHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHH
Confidence 4578999999999999555 567789999999999999999999999999999999999999999996 589999999
Q ss_pred HHHCCCChhhHHHHHHhCCC-cccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhhcCCC
Q 020213 87 LATLGTKPYEVASAITRFPP-ILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLA 165 (329)
Q Consensus 87 L~~lG~~~~~~~~~l~~~P~-ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~G~~ 165 (329)
|+++|++++++.+++.++|. +++.+.+++++|+++||+++|++.+++++++.++|++++.+.+. .++++++++++|++
T Consensus 93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~ 171 (343)
T 3mva_O 93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLS 171 (343)
T ss_dssp HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCC
Confidence 99999999999999999999 55555434899999999999999999999999999999999865 59999999977653
Q ss_pred -----chhhHHHHHHhcCcccccccccchhHHHHHHHH-hCCChhhHHHHHhhcC-ceeeeccccccchhHHHHH----H
Q 020213 166 -----REGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS-VGLKELDLQVVAVKFP-EVLCRDVNKILSPNFTFLK----R 234 (329)
Q Consensus 166 -----~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~-~g~~~~~i~~~i~~~P-~il~~s~~~~l~~k~~~L~----~ 234 (329)
+.+.+.+++.++|.+++++ +++++++++|+++ +|++++++..++.+.| .++..+.+. +++++.++. +
T Consensus 172 ~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~-l~~~~~~l~e~~~~ 249 (343)
T 3mva_O 172 LGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDY-ARRSYANIKEKLFS 249 (343)
T ss_dssp TTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTH-HHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHH-HHHHHHHHHHHHHH
Confidence 3568999999999999999 5799999999996 9999999999998854 788888764 899997776 6
Q ss_pred hCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhCCChhhhhcCCceeecCcchhhHHHHHHHHHcCCCCChh--h
Q 020213 235 CGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNIYCSLS--E 312 (329)
Q Consensus 235 ~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~~~~~i~~~P~~l~~sl~~~i~~R~~~l~~~gl~~~l~--~ 312 (329)
+|++.+|+.+|+.++|++|++| +++|++|++||.+ ||++.++|+++|.+|+||+| |++|||++|+++|+++++. .
T Consensus 250 lG~s~~ev~~~v~~~P~il~~s-~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~ 326 (343)
T 3mva_O 250 LGCTEEEVQKFVLSYPDVIFLA-EKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNIT 326 (343)
T ss_dssp TTCCHHHHHHHHHTCGGGGGSC-HHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGG
T ss_pred cCCCHHHHHHHHHhCCchhccc-HHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcch
Confidence 9999999999999999999999 5789999999999 99999999999999999999 9999999999999998888 9
Q ss_pred hhcccHHHHHHhhccC
Q 020213 313 MLDCNAKKFLIKFGLF 328 (329)
Q Consensus 313 ~l~~s~~~F~~~~~~~ 328 (329)
+|++||++|.++|++.
T Consensus 327 ~l~~s~~~F~~~~~~~ 342 (343)
T 3mva_O 327 LLSWSKKRYEAKLKKL 342 (343)
T ss_dssp GGGSCHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHhcc
Confidence 9999999999999875
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=3.1e-45 Score=328.00 Aligned_cols=242 Identities=21% Similarity=0.389 Sum_probs=222.4
Q ss_pred HHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHh
Q 020213 81 VPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLT 160 (329)
Q Consensus 81 ~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~ 160 (329)
.+.+++|.++|++.+++.+...-+|.+|+++++++++|+++||+++|++++++++++.++|.++.++++. +.++++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 5889999999999999987777777779999988999999999999999999999999999999999875 999999999
Q ss_pred hcCCCchhhHHHHHHhcCcccccccccchhHHHHHHH-HhCCChhhHHHHHhhcCceeeeccccccchhHHHH-HHhCCC
Q 020213 161 SLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLK-SVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFL-KRCGFA 238 (329)
Q Consensus 161 ~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~-~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L-~~~G~s 238 (329)
++|++ ++++.+++.++|+++.++++ ++++++++|+ ++|++.+++.+++.++|.+++.+.++ ++++++++ .++|++
T Consensus 85 ~~Gls-~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~-~~~~v~~l~~~~G~s 161 (270)
T 3m66_A 85 SKNFS-KADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEP-VKENMKVYRLELGFK 161 (270)
T ss_dssp HTTCC-HHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHH-HHHHHHHHHHTSCCC
T ss_pred HcCCC-HHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHH-HHHHHHHHHHHcCCC
Confidence 99998 46999999999999999986 6999999995 69999999999999999999999886 89999976 599999
Q ss_pred hhHHHHHHHhCchhhcccccchhhhHHHHHHHHhCCChhhhhcCCceeecCcchhhHHHHHHHHHc---CC------CCC
Q 020213 239 DGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQR---NI------YCS 309 (329)
Q Consensus 239 ~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~~~~~i~~~P~~l~~sl~~~i~~R~~~l~~~---gl------~~~ 309 (329)
.+++.+|+.++|++|++| +++|++|++||.++||+++++|+++|.+|+||++ |++|||++++.+ |+ +++
T Consensus 162 ~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~ 239 (270)
T 3m66_A 162 HNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYIS 239 (270)
T ss_dssp HHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCC
T ss_pred HHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCC
Confidence 999999999999999999 5899999999999999999999999999999999 999999998864 44 378
Q ss_pred hhhhhcccHHHHHHhhccC
Q 020213 310 LSEMLDCNAKKFLIKFGLF 328 (329)
Q Consensus 310 l~~~l~~s~~~F~~~~~~~ 328 (329)
+.+++.+||++|+++|+..
T Consensus 240 L~~~l~~sd~~F~~~~~~~ 258 (270)
T 3m66_A 240 LDKLVSIPDEIFCEEIAKA 258 (270)
T ss_dssp HHHHHHSCHHHHHHHTTCS
T ss_pred HHHHhcCCHHHHHHHHhcC
Confidence 8999999999999999865
No 3
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=5.9e-43 Score=323.11 Aligned_cols=285 Identities=21% Similarity=0.316 Sum_probs=253.4
Q ss_pred ccccCCcchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhHHHhhCCCccccccc-cchH
Q 020213 3 ISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLN-EKLV 81 (329)
Q Consensus 3 ~~~~~~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~-~~l~ 81 (329)
.++.+|++++++||+++|++++++++++.++|.++..+++++.++++||++.|++++++.+++.++|++|..+.+ +++.
T Consensus 45 ~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~ 124 (343)
T 3mva_O 45 HRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLE 124 (343)
T ss_dssp GCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHH
T ss_pred ccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHH
Confidence 357889999999999999999999999999999999999999999999999999999999999999995544444 4899
Q ss_pred HHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCC------chhhhhhHhhCCceeccCcchhHhHH
Q 020213 82 PMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVP------EKQLGRMILLNPRLISYSIESKLTET 155 (329)
Q Consensus 82 ~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~------~~~l~~~l~~~P~il~~~~~~~l~~~ 155 (329)
++++||+++|++.+++.+++.++|++++.++++ .++.+++|+++|++ .+.|.+++.++|.++..+ +++++++
T Consensus 125 p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~ 202 (343)
T 3mva_O 125 NNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKAN 202 (343)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHH
Confidence 999999999999999999999999999999976 59999999976654 567999999999999999 6799999
Q ss_pred HHHHh-hcCCCchhhHHHHHHhc-CcccccccccchhHHHHHHH----HhCCChhhHHHHHhhcCceeeeccccccchhH
Q 020213 156 VDFLT-SLGLAREGMIGKVLVKH-PFIMGYSVDNRLRPTSEFLK----SVGLKELDLQVVAVKFPEVLCRDVNKILSPNF 229 (329)
Q Consensus 156 ~~~l~-~~G~~~~~~i~~ll~~~-p~ll~~~~~~~l~~~~~~l~----~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~ 229 (329)
++||+ ++|+++ +++.+++.+. |.++..+. +.+++++.++. ++|++++++..|+.++|.++.+|.++ +++|+
T Consensus 203 v~fL~~~~G~~~-~~~~~~i~~~~~~~l~~s~-~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~ 279 (343)
T 3mva_O 203 IEFLRSTFNLNS-EELLVLICGPGAEILDLSN-DYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKK-FNDKI 279 (343)
T ss_dssp HHHHHHHSCCCH-HHHHHHHHTTTGGGGGCCT-THHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHH-HHHHH
T ss_pred HHHHHHHcCCCH-HHHHHHHhcCChHHhhccH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHH-HHHHH
Confidence 99999 599985 5888888774 58888886 48999997776 69999999999999999999999987 99999
Q ss_pred HHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhCCChhhhhcCCceeecCcchhhHHHHHHH
Q 020213 230 TFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLL 301 (329)
Q Consensus 230 ~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~~~~~i~~~P~~l~~sl~~~i~~R~~~l 301 (329)
+||..+|++.++|. ++|++|++|++ +|++|++||.. .|++... .+..+|+.| |+++..|++.|
T Consensus 280 ~fl~~mg~~~~~i~----~~P~~l~~sle-ri~~R~~~L~~-~g~~~~~--~~~~~l~~s-~~~F~~~~~~~ 342 (343)
T 3mva_O 280 DCLMEENISISQII----ENPRVLDSSIS-TLKSRIKELVN-AGCNLST--LNITLLSWS-KKRYEAKLKKL 342 (343)
T ss_dssp HHHHTTTCCHHHHH----HSGGGGGSCHH-HHHHHHHHHHT-TTCCSSS--SCGGGGGSC-HHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHH----hCCHHHhcCHH-HHHHHHHHHHH-CCCCCCC--CcchhhcCC-HHHHHHHHhcc
Confidence 99999999999876 99999999986 99999999985 8875442 222788888 77888887653
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=281.34 Aligned_cols=204 Identities=19% Similarity=0.350 Sum_probs=190.3
Q ss_pred hHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHH
Q 020213 115 KLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSE 194 (329)
Q Consensus 115 ~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~ 194 (329)
.+.+.++.|.++|+++++|+++++.+|.++. .++.+++.+|..+|+++ ++|.++|+++|++|.++++ +|+++++
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~-e~V~kiL~k~P~lL~~s~e-~L~~~l~ 118 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNP-EPVCVVLKKSPQLLKLPIM-QMRKRSS 118 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCH-HHHHHHHHHCGGGGGSCHH-HHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCH-HHHHHHHHhChhhccCCHH-HHHHHHH
Confidence 4677888999999999999999999999863 46888999999999985 6999999999999999985 8999999
Q ss_pred HHHHhCCChhhHHHHHhhcCceeeeccccccchhHHHHH-HhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhC
Q 020213 195 FLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLK-RCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMG 273 (329)
Q Consensus 195 ~l~~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~-~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g 273 (329)
||+++|++.+++.+++.++|++|+++.++ +..++.+|. ++||+.+++.+|+.++|++|++| +++|++|++||+++||
T Consensus 119 fL~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~Mg 196 (335)
T 4fp9_B 119 YLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRMG 196 (335)
T ss_dssp HHHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTTC
T ss_pred HHHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999986 899999987 89999999999999999999999 6899999999999999
Q ss_pred CChhhhhcCCceeecCcchhhHHHHHHHHHcCC-------------CCChhhhhcccHHHHHHhhccC
Q 020213 274 RQIDEVADYPDFFRHGLKKRLELRHRLLKQRNI-------------YCSLSEMLDCNAKKFLIKFGLF 328 (329)
Q Consensus 274 ~~~~~i~~~P~~l~~sl~~~i~~R~~~l~~~gl-------------~~~l~~~l~~s~~~F~~~~~~~ 328 (329)
+++++|++ |.+|+||++ ||+|||.||+.+|. +|+|..++.+||++||.++.++
T Consensus 197 l~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~ 262 (335)
T 4fp9_B 197 IKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACT 262 (335)
T ss_dssp CCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCC
T ss_pred CCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhc
Confidence 99999997 999999998 99999999999987 4689999999999999998754
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=3.1e-37 Score=276.00 Aligned_cols=243 Identities=16% Similarity=0.308 Sum_probs=212.7
Q ss_pred hHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchHHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHH
Q 020213 44 AADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFF 123 (329)
Q Consensus 44 l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L 123 (329)
-.+++++|.++|++.+++.+....+|.+|..++++++.++++||+++|++++++++++.++|.+++.++++ ++|+++||
T Consensus 5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 35889999999999999887777777779999988999999999999999999999999999999999986 99999999
Q ss_pred HHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHH-hhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHH-HhCC
Q 020213 124 QALGVPEKQLGRMILLNPRLISYSIESKLTETVDFL-TSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLK-SVGL 201 (329)
Q Consensus 124 ~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l-~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~-~~g~ 201 (329)
+++|++++++++++.++|+++..+++ ++.++++|| .++|++ ++++.+++.++|.+++++.+ .++++++++. ++|+
T Consensus 84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~-~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~ 160 (270)
T 3m66_A 84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELS-VKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGF 160 (270)
T ss_dssp HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCC-HHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCC
T ss_pred HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCC-HHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCC
Confidence 99999999999999999999999986 699999999 589998 46999999999999999985 7999999875 5999
Q ss_pred ChhhHHHHHhhcCceeeeccccccchhHHHHH-HhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHh--CCChhh
Q 020213 202 KELDLQVVAVKFPEVLCRDVNKILSPNFTFLK-RCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVM--GRQIDE 278 (329)
Q Consensus 202 ~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~-~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~--g~~~~~ 278 (329)
+.+++..++.++|.++++|.+ ++++|++||. ++|++.+++. ++|.+|++|++ +|++|+.|+.... |....+
T Consensus 161 s~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i~----~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~ 234 (270)
T 3m66_A 161 KHNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHIIV----KFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAK 234 (270)
T ss_dssp CHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHHH----HCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTS
T ss_pred CHHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHHH----hCchHhhCCHH-HHHHHHHHHHHhhccCCCCCC
Confidence 999999999999999999986 5999999996 8999999876 99999999986 9999999999732 332222
Q ss_pred hhcCCc---eeecCcchhhHHHH
Q 020213 279 VADYPD---FFRHGLKKRLELRH 298 (329)
Q Consensus 279 i~~~P~---~l~~sl~~~i~~R~ 298 (329)
..++. ++..| |+++..|+
T Consensus 235 -~~~~~L~~~l~~s-d~~F~~~~ 255 (270)
T 3m66_A 235 -PNYISLDKLVSIP-DEIFCEEI 255 (270)
T ss_dssp -SSCCCHHHHHHSC-HHHHHHHT
T ss_pred -CCCCCHHHHhcCC-HHHHHHHH
Confidence 12233 56666 66666654
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.95 E-value=2.7e-27 Score=215.29 Aligned_cols=182 Identities=21% Similarity=0.334 Sum_probs=160.9
Q ss_pred cchHHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHH
Q 020213 78 EKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVD 157 (329)
Q Consensus 78 ~~l~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~ 157 (329)
..+...+..|.++|+++.++++++.++|.++.. ++.+.+.+|..+|+++++|+++|.++|+++..++ +++.+++.
T Consensus 44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~-e~L~~~l~ 118 (335)
T 4fp9_B 44 LELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSS 118 (335)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCH-HHHHHHHH
T ss_pred ccHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCH-HHHHHHHH
Confidence 357888889999999999999999999998753 4667899999999999999999999999999998 47999999
Q ss_pred HHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHH-hCCChhhHHHHHhhcCceeeeccccccchhHHHHH-Hh
Q 020213 158 FLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS-VGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLK-RC 235 (329)
Q Consensus 158 ~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~-~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~-~~ 235 (329)
||+++|++ ++++.+++.++|.+++++.+ .+..++.+|.. +|++.+++..|+.++|.+|++|.++ +++|++||. +|
T Consensus 119 fL~~lGl~-~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~-L~~K~efLv~~M 195 (335)
T 4fp9_B 119 YLQKLGLG-EGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQ-LEYKFQYAYFRM 195 (335)
T ss_dssp HHHHTTCT-TTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHTTT
T ss_pred HHHHcCCC-HHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHHh
Confidence 99999997 46899999999999999975 78999999876 9999999999999999999999775 999999998 99
Q ss_pred CCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhCC
Q 020213 236 GFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGR 274 (329)
Q Consensus 236 G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~ 274 (329)
|++.+++. + |.+|++|++ +|++|+.||.. +|.
T Consensus 196 gl~~~eIv----k-P~~l~ySLe-RIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 196 GIKHPDIV----K-SEYLQYSLT-KIKQRHIYLER-LGR 227 (335)
T ss_dssp CCCHHHHH----H-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred CCCHHHcc----c-cchhhccHH-HHHHHHHHHHH-cCC
Confidence 99999876 3 999999985 99999999996 774
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.61 E-value=9.1e-15 Score=113.70 Aligned_cols=169 Identities=22% Similarity=0.406 Sum_probs=149.1
Q ss_pred HhHHHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHHhCCChhhHHHHHhhcCceeeeccccccchhHHH
Q 020213 152 LTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTF 231 (329)
Q Consensus 152 l~~~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~ 231 (329)
+-..+.-|--+|+.|+ .+--.+++.|.++...+ ..++.+-.|++.+|+++..+.+++--+|.+++..-.. |...+..
T Consensus 33 lldiisefillglnpe-pvcvvlkkspqllklpi-mqmrkrssylqklglgegklkrvlyccpeiftmrqqd-indtvrl 109 (239)
T 4fzv_B 33 LLDIISEFILLGLNPE-PVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRL 109 (239)
T ss_dssp TTHHHHHHHHHCCCTT-HHHHHHHSCGGGGTSCH-HHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHH-HHHHHHH
T ss_pred HHHHHHHHHhhcCCCC-ceEEEecCCHHHhcChH-HHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhh-HhHHHHH
Confidence 3444455555799874 78788999999999987 4788999999999999999999999999999987665 8899999
Q ss_pred HH-HhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhCCChhhhhcCCceeecCcchhhHHHHHHHHHcCC----
Q 020213 232 LK-RCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMGRQIDEVADYPDFFRHGLKKRLELRHRLLKQRNI---- 306 (329)
Q Consensus 232 L~-~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g~~~~~i~~~P~~l~~sl~~~i~~R~~~l~~~gl---- 306 (329)
|+ .+-|+.+++.+++..||.++.-++ ..+..|+.|-.-.||+...+|++. .++.||+. +|+.||-||...|.
T Consensus 110 lkekclftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtp 186 (239)
T 4fzv_B 110 LKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTP 186 (239)
T ss_dssp HHHHSCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCC
T ss_pred HHHhHHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCC
Confidence 98 889999999999999999999996 799999999888899999999988 89999986 79999999998875
Q ss_pred ---------CCChhhhhcccHHHHHHhhc
Q 020213 307 ---------YCSLSEMLDCNAKKFLIKFG 326 (329)
Q Consensus 307 ---------~~~l~~~l~~s~~~F~~~~~ 326 (329)
||-+..++..|+.+|+++-.
T Consensus 187 dkkgqtqipnpllkdilrvseaeflarta 215 (239)
T 4fzv_B 187 DKKGQTQIPNPLLKDILRVSEAEFLARTA 215 (239)
T ss_dssp CSSSCCSSCCCCHHHHHTSCHHHHHHHTS
T ss_pred CccCCccCCChHHHHHHHHhHHHHHHHHh
Confidence 68899999999999998853
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.10 E-value=1.1e-09 Score=85.28 Aligned_cols=150 Identities=20% Similarity=0.363 Sum_probs=130.5
Q ss_pred cchHHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHH
Q 020213 78 EKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVD 157 (329)
Q Consensus 78 ~~l~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~ 157 (329)
.++-..+.-+--+|++++-++-++.+.|.++...+. .++.+..||+.+|+....+.+++-.+|.|+.+.. ..+...+.
T Consensus 31 qqlldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrq-qdindtvr 108 (239)
T 4fzv_B 31 QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVR 108 (239)
T ss_dssp CTTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-hhHhHHHH
Confidence 356667777778999999999999999999999986 5888999999999999999999999999999986 57999999
Q ss_pred HHh-hcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHH-hCCChhhHHHHHhhcCceeeeccccccchhHHHHHHh
Q 020213 158 FLT-SLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS-VGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRC 235 (329)
Q Consensus 158 ~l~-~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~-~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~~~ 235 (329)
.++ .+-|+. .++.+++.++|.++.-+. ..++-+++|..- ||+...+|.+ ...+.+|..+ |+++.-||.++
T Consensus 109 llkekclftv-qqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-----seylqysltk-ikqrhiylerl 180 (239)
T 4fzv_B 109 LLKEKCLFTV-QQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSLTK-IKQRHIYLERL 180 (239)
T ss_dssp HHHHHSCCCH-HHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCHHH-HHHHHHHHHHH
T ss_pred HHHHhHHhhH-HHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-----HHHHHHHHHH-HHHHHhHHHHh
Confidence 998 577874 699999999999999887 478888888775 9999988754 5778888886 89999999999
Q ss_pred CC
Q 020213 236 GF 237 (329)
Q Consensus 236 G~ 237 (329)
|-
T Consensus 181 gr 182 (239)
T 4fzv_B 181 GR 182 (239)
T ss_dssp TC
T ss_pred cc
Confidence 86
No 9
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=94.64 E-value=0.11 Score=50.44 Aligned_cols=14 Identities=7% Similarity=0.209 Sum_probs=8.9
Q ss_pred CCCChhHHHHHHHh
Q 020213 19 RGFNDRTIHDMFKR 32 (329)
Q Consensus 19 ~G~s~~~i~~i~~~ 32 (329)
+|+|.+++-.|..+
T Consensus 253 ~gls~~qvVaIAsn 266 (1047)
T 3ugm_A 253 HGLPPDQVVAIASN 266 (1047)
T ss_dssp SCCCHHHHHHHHSS
T ss_pred cCCCHHHHHHHHhc
Confidence 66666666666553
No 10
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=94.57 E-value=0.079 Score=51.48 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=7.5
Q ss_pred CCCChhHHHHHHH
Q 020213 19 RGFNDRTIHDMFK 31 (329)
Q Consensus 19 ~G~s~~~i~~i~~ 31 (329)
+|+|.+++..|..
T Consensus 287 ~gls~~qvvaIAs 299 (1047)
T 3ugm_A 287 HGLTPDQVVAIAS 299 (1047)
T ss_dssp HCCCHHHHHHHHS
T ss_pred ccCCHHHHHHHHh
Confidence 5666666655554
No 11
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=92.56 E-value=0.76 Score=34.60 Aligned_cols=98 Identities=7% Similarity=0.044 Sum_probs=60.6
Q ss_pred chHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHH------hCCCCCCChhHHHhhCCCccccccccchHHH
Q 020213 10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLK------SIGILERKLPNVVSKCPKILTLGLNEKLVPM 83 (329)
Q Consensus 10 ~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~------~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~ 83 (329)
..++.-|.++||+...+.+.+.... .+.+..++||. ..|+++.++...+..+..--... ..-...
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g-------~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~--~~~~~~ 79 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAG-------ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKM--MEFLQL 79 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHC-------SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHH--HHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHC-------cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCcccc--ccCHHH
Confidence 4677888999999999998887663 14455556654 34666666666554332100000 112245
Q ss_pred HHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHH
Q 020213 84 VECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQ 124 (329)
Q Consensus 84 l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~ 124 (329)
+.-|.++||+.+.+.+++..+ . +++...++||.
T Consensus 80 v~~L~eMGF~~~~a~~AL~~~----~----nd~erAlewL~ 112 (118)
T 4ae4_A 80 MSKFKEMGFELKDIKEVLLLH----N----NDQDNALEDLM 112 (118)
T ss_dssp HHHHHHTTCCHHHHHHHHHHT----T----TCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHc----C----CCHHHHHHHHH
Confidence 777778888888888887776 2 33455566664
No 12
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=91.98 E-value=2.3 Score=31.91 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=62.9
Q ss_pred HHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHH------HCCCCchhhhhhHhhCCceeccCcchhHhH
Q 020213 81 VPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQ------ALGVPEKQLGRMILLNPRLISYSIESKLTE 154 (329)
Q Consensus 81 ~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~------~lG~~~~~l~~~l~~~P~il~~~~~~~l~~ 154 (329)
+..+.-|.++|++...+.+.+.++- .++ ...++||- +.|+++.++..-+..+..--.. .....+
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g----~~~----e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~--~~~~~~ 78 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAG----ANI----EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK--MMEFLQ 78 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHC----SCH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH--HHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHC----cCH----HHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc--cccCHH
Confidence 5677888889999998888887762 233 33455553 5677776665555443210000 112345
Q ss_pred HHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHH
Q 020213 155 TVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS 198 (329)
Q Consensus 155 ~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~ 198 (329)
.+.-|.++||+ .+.+.+++..+. +.+.+.+++|..
T Consensus 79 ~v~~L~eMGF~-~~~a~~AL~~~~--------nd~erAlewL~~ 113 (118)
T 4ae4_A 79 LMSKFKEMGFE-LKDIKEVLLLHN--------NDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHTTCC-HHHHHHHHHHTT--------TCHHHHHHHHHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence 67888889997 457777777653 467888888775
No 13
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=91.45 E-value=0.78 Score=41.21 Aligned_cols=112 Identities=12% Similarity=0.088 Sum_probs=58.9
Q ss_pred CCCCchhhhhhHhhCCceeccCcchhHhHHHHHHh-hcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHH-hCCCh
Q 020213 126 LGVPEKQLGRMILLNPRLISYSIESKLTETVDFLT-SLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS-VGLKE 203 (329)
Q Consensus 126 lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~-~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~-~g~~~ 203 (329)
++++++++.+|-.+.-.- .-+ +.+......|. .+|+++ +++..|-..+..--. . +.+......+.. .|++.
T Consensus 140 l~Lsp~qvVaIAsn~GGk--qAL-eaV~~llpvL~~a~~Ls~-~qVVaIAsn~GGkQA--L-eaV~~llpvl~~~~~Ls~ 212 (463)
T 4hpz_A 140 LNLTPDQVVAIASNIGGK--QAL-ETVQRLLPVLCQDHGLTP-QQVVAIASNGGGKQA--L-ETVQRLLPVLCQAHGLTP 212 (463)
T ss_dssp TCCCHHHHHHHHSSTTHH--HHH-HHHHHHHHHHHHHHCCCH-HHHHHHHTSTTHHHH--H-HHHHHHHHHHHHHHCCCH
T ss_pred cCCCHHHHHHHHhcCccH--HHH-HHHHHHHHHHhhhcCCCH-HHHHHHhhcCchHHH--H-HHHHHHHHHhhccccCCH
Confidence 677777777776554431 112 23555555565 478876 466655444331111 1 244555556655 78888
Q ss_pred hhHHHHHhhcCceeeeccccccchhHHHHH-HhCCChhHHHHHHH
Q 020213 204 LDLQVVAVKFPEVLCRDVNKILSPNFTFLK-RCGFADGQIAALVA 247 (329)
Q Consensus 204 ~~i~~~i~~~P~il~~s~~~~l~~k~~~L~-~~G~s~~~v~~l~~ 247 (329)
++|..+-...-.- .-.+ .+..-.-.|+ ..||+.++|.++-.
T Consensus 213 aqVVaIAsn~GGk--QALe-aV~~llpvl~~~~gls~aqVVaIAs 254 (463)
T 4hpz_A 213 DQVVAIASHDGGK--QALE-TVQRLLPVLCQDHGLTPQQVVAIAS 254 (463)
T ss_dssp HHHHHHHSSTTHH--HHHH-HHHHHHHHHHHHSCCCHHHHHHHHS
T ss_pred HHHHHHhhccccH--HHHH-HHHhhhhhhhhhccCCHHHHHHHhc
Confidence 8877764322100 0112 1333334444 47888888876644
No 14
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=90.76 E-value=0.23 Score=45.27 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=32.2
Q ss_pred cchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCC
Q 020213 9 GNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILE 58 (329)
Q Consensus 9 ~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~ 58 (329)
-+..+.-|.++||++.++.+.++..- .+....++||.+ |+++
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~-------nn~~~A~e~L~~-gip~ 209 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASY-------NNPHRAVEYLLT-GIPG 209 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSC-------SSTTHHHHTTTT-SSTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHh-CCCc
Confidence 34567889999999999999988552 366778899876 5654
No 15
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=90.54 E-value=0.33 Score=44.27 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=12.8
Q ss_pred HhHHHHHHhhcCCCchhhHHHHHHh
Q 020213 152 LTETVDFLTSLGLAREGMIGKVLVK 176 (329)
Q Consensus 152 l~~~~~~l~~~G~~~~~~i~~ll~~ 176 (329)
.+..|..|.++||++ +.+.++++.
T Consensus 168 ~~~~i~~l~~MGf~~-~~~~~AL~a 191 (368)
T 1oqy_A 168 YETMLTEIMSMGYER-ERVVAALRA 191 (368)
T ss_dssp HHHHHHHHHTTTCCS-HHHHHHHHH
T ss_pred hHHHHHHHHHcCCCH-HHHHHHHHH
Confidence 455555555666653 355555554
No 16
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=90.39 E-value=0.8 Score=41.14 Aligned_cols=124 Identities=12% Similarity=0.134 Sum_probs=68.7
Q ss_pred HhHHHHHHH-HCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHh-hcCCCchhhHHHHHHhcCcccccccccchhHHH
Q 020213 116 LCPLLAFFQ-ALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLT-SLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTS 193 (329)
Q Consensus 116 l~~~v~~L~-~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~-~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~ 193 (329)
+......|. ..|++++++.++-.+.-.= .-+ +.+......+. ..|+++ ++|..|-.....--. . +.+..-.
T Consensus 163 V~~llpvL~~a~~Ls~~qVVaIAsn~GGk--QAL-eaV~~llpvl~~~~~Ls~-aqVVaIAsn~GGkQA--L-eaV~~ll 235 (463)
T 4hpz_A 163 VQRLLPVLCQDHGLTPQQVVAIASNGGGK--QAL-ETVQRLLPVLCQAHGLTP-DQVVAIASHDGGKQA--L-ETVQRLL 235 (463)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHTSTTHH--HHH-HHHHHHHHHHHHHHCCCH-HHHHHHHSSTTHHHH--H-HHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHhhcCchH--HHH-HHHHHHHHHhhccccCCH-HHHHHHhhccccHHH--H-HHHHhhh
Confidence 333444454 3899999988887655421 112 24555666665 478986 477765544322111 1 2444445
Q ss_pred HHHHH-hCCChhhHHHHHhhcCceeeeccccccchhHHHHH-HhCCChhHHHHHHHhC
Q 020213 194 EFLKS-VGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLK-RCGFADGQIAALVAAY 249 (329)
Q Consensus 194 ~~l~~-~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~-~~G~s~~~v~~l~~~~ 249 (329)
..+.. .|++.++|..|-...-.- .-.+ .++.-.-.|+ .+|++.++|..|-...
T Consensus 236 pvl~~~~gls~aqVVaIAsn~GGk--QALe-aV~~llP~L~~~~gls~~qVVaIAsN~ 290 (463)
T 4hpz_A 236 PVLCQDHGLTPQQVVAIASNIGGK--QALE-TVQRLLPVLCQDHGLTPDQVVAIASND 290 (463)
T ss_dssp HHHHHHSCCCHHHHHHHHSSTTHH--HHHH-HHHHHHHHHHHTTCCCHHHHHHHHTST
T ss_pred hhhhhhccCCHHHHHHHhcccchH--HHHH-HHHhhchhhhhccCCCHHHhhhhhcCc
Confidence 55554 899999988765422110 0112 2333344555 4799999988664443
No 17
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=90.24 E-value=1.4 Score=39.96 Aligned_cols=46 Identities=7% Similarity=0.029 Sum_probs=20.2
Q ss_pred CCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHh-CCCCCCChhHHHh
Q 020213 19 RGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKS-IGILERKLPNVVS 66 (329)
Q Consensus 19 ~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~-~G~~~~~i~~i~~ 66 (329)
++++++++..|..++..- .-.+.+......|+. +|++++++..|-+
T Consensus 65 l~ls~~qvvaIA~n~GGk--qAleaV~~l~p~L~~a~gLs~~qVVaIAs 111 (499)
T 3v6t_A 65 LNLTPEQVVAIASHDGGK--QALETVQRLLPVLCQAHGLTPQQVVAIAS 111 (499)
T ss_dssp TCCCHHHHHHHHSSTTHH--HHHHHHHHHHHHHHHHSCCCHHHHHHHHS
T ss_pred cCCCHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhcCCCHHHhhhhhh
Confidence 566666665555433210 001222333333333 5666666655443
No 18
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=87.19 E-value=3.2 Score=37.70 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=56.4
Q ss_pred HHHHh-CCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHh-CCCCCCChhHHHhhCCCccccccccchHHHHHHHH-HC
Q 020213 14 WFLKD-RGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKS-IGILERKLPNVVSKCPKILTLGLNEKLVPMVECLA-TL 90 (329)
Q Consensus 14 ~~L~~-~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~-~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~-~l 90 (329)
..|+. +|++.+++..|...... ..-.+.+...+..|+. +|++.+++..|-..+---=. -+.+...+--|+ ..
T Consensus 93 p~L~~a~gLs~~qVVaIAsn~GG--kqALe~V~~~lpvL~~~~~Ls~~qVVaIAsn~GGkQA---LeaV~~llpvL~~a~ 167 (499)
T 3v6t_A 93 PVLCQAHGLTPQQVVAIASHDGG--KQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA---LETVQALLPVLCQAH 167 (499)
T ss_dssp HHHHHHSCCCHHHHHHHHSSTTH--HHHHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTHHHH---HHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCCHHHhhhhhhcCcc--HHHHHHHHHhhHHhhhhcCCCHHHhHHHhhcCCcHHH---HHHHHHhhHHHHHhc
Confidence 34444 88888888777765321 0002334444455554 68888887776432210000 012333333343 37
Q ss_pred CCChhhHHHHHHhCCCcccccchhhHhHHHHHHHH-CCCCchhhhhhHhhC
Q 020213 91 GTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQA-LGVPEKQLGRMILLN 140 (329)
Q Consensus 91 G~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~-lG~~~~~l~~~l~~~ 140 (329)
|++++++.++-...- +..--+.++...-.|.. .|++.+++..|-.+.
T Consensus 168 gls~~qVvaIAsN~G---GkQALeaV~~llpvl~~~~gls~~qVVaiAsn~ 215 (499)
T 3v6t_A 168 GLTPEQVVAIASNGG---GKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 215 (499)
T ss_dssp CCCHHHHHHHHSSTT---HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSST
T ss_pred CCCHHHHHHHhcccc---hHHHHHHHHHhhhhHHhhccCCHHHHHHHhhcc
Confidence 788777777533210 00000122222333333 566666666655444
No 19
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=84.99 E-value=0.86 Score=29.00 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=16.0
Q ss_pred cchhHHHHHHhCCChhHHHHHHHh
Q 020213 225 LSPNFTFLKRCGFADGQIAALVAA 248 (329)
Q Consensus 225 l~~k~~~L~~~G~s~~~v~~l~~~ 248 (329)
+..|++||++-|++.+||..++.+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 455677777777777777666554
No 20
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=84.57 E-value=1.8 Score=27.53 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=15.0
Q ss_pred hHHHHHHHHHCCCChhhHHHHHHh
Q 020213 80 LVPMVECLATLGTKPYEVASAITR 103 (329)
Q Consensus 80 l~~~l~~L~~lG~~~~~~~~~l~~ 103 (329)
+..+++||++-|++.++|..++.+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 556666666666666666665544
No 21
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=76.69 E-value=2 Score=28.79 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=16.3
Q ss_pred cchhHHHHHHhCCChhHHHHHHHh
Q 020213 225 LSPNFTFLKRCGFADGQIAALVAA 248 (329)
Q Consensus 225 l~~k~~~L~~~G~s~~~v~~l~~~ 248 (329)
+..|+.||++-|++.+||..++.+
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 455677777777777777666655
No 22
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=76.34 E-value=4.3 Score=27.21 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=16.9
Q ss_pred chHHHHHHHHHCCCChhhHHHHHHhC
Q 020213 79 KLVPMVECLATLGTKPYEVASAITRF 104 (329)
Q Consensus 79 ~l~~~l~~L~~lG~~~~~~~~~l~~~ 104 (329)
.+..+++||++-|++.++|..++.+.
T Consensus 34 p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 34 PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 35666677777777777776666653
No 23
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=75.90 E-value=10 Score=28.58 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=55.4
Q ss_pred hHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhHHHhhCCCccc-ccc-------------
Q 020213 11 SVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILT-LGL------------- 76 (329)
Q Consensus 11 ~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~-~~~------------- 76 (329)
..+.-|.++||+...+.+.+..... .+++..++||..+.- +.++. .|..+. ++.
T Consensus 5 ~~l~~L~~MGF~~~~a~~AL~~t~n------~~~e~A~~wL~~~~~-d~di~-----epl~~~~~~s~~~~~~~~l~~~~ 72 (126)
T 2lbc_A 5 SSVMQLAEMGFPLEACRKAVYFTGN------MGAEVAFNWIIVHME-EPDFA-----EPLTMPGYGGAASAGASVFGASG 72 (126)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHTS------CCHHHHHHHHHHGGG-CSSSS-----CTTCCSSCCSSSSSCCCCSTTSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHHhcc-ccccc-----ccccccccccccccchhhhcccc
Confidence 4566788899999999998886632 357888899987522 22221 121110 000
Q ss_pred -c-cchHHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHH
Q 020213 77 -N-EKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQ 124 (329)
Q Consensus 77 -~-~~l~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~ 124 (329)
+ ..-...+.-|.++|++...+.+.+..+ . +++...++||-
T Consensus 73 ~~~~~~e~~v~~L~~MGF~~~~a~~AL~~~----~----~~~e~A~e~L~ 114 (126)
T 2lbc_A 73 LDNQPPEEIVAIITSMGFQRNQAIQALRAT----N----NNLERALDWIF 114 (126)
T ss_dssp CCCCCCHHHHHHHHHHTSCHHHHHHHHHHH----T----SCHHHHHHHHH
T ss_pred cccCcCHHHHHHHHHcCCCHHHHHHHHHHc----C----CCHHHHHHHHH
Confidence 0 023456777777788877777776654 1 23444566664
No 24
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=75.90 E-value=3.7 Score=27.65 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCCchhhHHHHHHhcCcccccc-cccchhH--HHHHHHHhCCChhhHHHHHh
Q 020213 154 ETVDFLTSLGLAREGMIGKVLVKHPFIMGYS-VDNRLRP--TSEFLKSVGLKELDLQVVAV 211 (329)
Q Consensus 154 ~~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~-~~~~l~~--~~~~l~~~g~~~~~i~~~i~ 211 (329)
.+++||.++|+++ ....+ +...|.-+ +++.+-+ .=+.|+.||+.+.+|.+++.
T Consensus 4 dWf~FFl~aGv~~-~~c~r----YA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 4 DWFEFFLNCGVDV-SNCQR----YTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp CHHHHHHHTTCCH-HHHHH----HHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHH
T ss_pred cHHHHHHHcCCCh-HHHHH----HHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHH
Confidence 3788999999964 24433 22222211 1111111 11678888888888776654
No 25
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=72.68 E-value=5.4 Score=25.14 Aligned_cols=44 Identities=9% Similarity=0.137 Sum_probs=34.1
Q ss_pred cchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCC
Q 020213 9 GNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILE 58 (329)
Q Consensus 9 ~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~ 58 (329)
-+..++-|.++||+.+.+...++.-. -..+++.++||...+++.
T Consensus 9 n~qmlq~L~eMGFd~erae~Alk~Tg------~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 9 NRQMLQELVNAGCDQEMAGRALKQTG------SRSIEAALEYISKMSGPS 52 (54)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHHT------SCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC------cccHHHHHHHHHHhcCCC
Confidence 34568889999999998888877542 246899999999887754
No 26
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=70.66 E-value=6.4 Score=24.29 Aligned_cols=38 Identities=8% Similarity=0.180 Sum_probs=28.9
Q ss_pred cchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHh
Q 020213 9 GNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKS 53 (329)
Q Consensus 9 ~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~ 53 (329)
.+..++-|.++||++.++...++..- .+++..+++|.+
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASY-------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTT-------SCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHh
Confidence 34566888999999999988887542 356777888876
No 27
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=69.12 E-value=16 Score=29.22 Aligned_cols=138 Identities=9% Similarity=0.133 Sum_probs=79.3
Q ss_pred HHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCC-CChhHHHhhCCCccccccccchHHHHHHHHHC
Q 020213 12 VIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILE-RKLPNVVSKCPKILTLGLNEKLVPMVECLATL 90 (329)
Q Consensus 12 v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~-~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~~l 90 (329)
.+++|..-.-|..++..-+.+. ..+++.+..+++.|...|+-+ ...++.+.+. -...+ .........-|+.-
T Consensus 24 Al~~Ls~r~~S~~EL~~KL~~k----g~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~--~~~~~-~~G~~~I~~eL~~K 96 (177)
T 3e3v_A 24 ALNYLSYQLRTRKEVEDKLRSL----DIHEDYISEIINKLIDLDLINDKNYAESYVRT--MMNTS-DKGPKVIKLNLSKK 96 (177)
T ss_dssp HHHHHHSSCCCHHHHHTTSGGG----TCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHH--HHHHC-CCCHHHHHHHHHTT
T ss_pred HHHHhccccccHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHcc-cccHHHHHHHHHHc
Confidence 3456666666777776655544 456778999999999987754 4454444332 11111 12345566778889
Q ss_pred CCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhhcCCCchhhH
Q 020213 91 GTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMI 170 (329)
Q Consensus 91 G~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~G~~~~~~i 170 (329)
|++.+.|..++...+ -++........+++ -+...+. .+....-...+.||..-||+. +.|
T Consensus 97 GI~~~~I~~al~~~~------~~de~e~a~~l~~K----------k~~~~~~---~~~~~~~~K~~~~L~rrGF~~-~~I 156 (177)
T 3e3v_A 97 GIDDNIAEDALILYT------DKLQVEKGVTLAEK----------LANRYSH---DSYRNKQNKIKQSLLTKGFSY-DII 156 (177)
T ss_dssp TCCHHHHHHHHTTSC------HHHHHHHHHHHHHH----------HHHHTTT---SCHHHHHHHHHHHHHHTTCCH-HHH
T ss_pred CCCHHHHHHHHHhCC------chhHHHHHHHHHHH----------HHhhccC---CChHHHHHHHHHHHHHCCCCH-HHH
Confidence 999998888876532 12222222222221 1112221 122233455677999999985 477
Q ss_pred HHHHHh
Q 020213 171 GKVLVK 176 (329)
Q Consensus 171 ~~ll~~ 176 (329)
..++..
T Consensus 157 ~~vl~~ 162 (177)
T 3e3v_A 157 DTIIQE 162 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 28
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=68.14 E-value=11 Score=23.62 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=25.3
Q ss_pred HHHHHHhCCC-ChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCC
Q 020213 12 VIWFLKDRGF-NDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGI 56 (329)
Q Consensus 12 v~~~L~~~G~-s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~ 56 (329)
-++-|.++|| ++..+...+...- .+++..+++|.+.+.
T Consensus 14 ~l~~L~~MGF~~~~~~~~AL~~t~-------gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 14 QLEQLNSMGFINREANLQALIATG-------GDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHT-------SCHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhC-------CCHHHHHHHHHHcCC
Confidence 3677788888 6666666665442 367777888877653
No 29
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=66.85 E-value=5.2 Score=24.74 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=26.9
Q ss_pred cchhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHH
Q 020213 225 LSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVE 270 (329)
Q Consensus 225 l~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~ 270 (329)
-.++++-|.+|||+.+++.+.++++- .++..-++||..
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTT--------SCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 36678889999999999887776543 244555666654
No 30
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=63.14 E-value=4.5 Score=24.09 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=17.8
Q ss_pred hhHHHHHHhCCChhHHHHHHHhC
Q 020213 227 PNFTFLKRCGFADGQIAALVAAY 249 (329)
Q Consensus 227 ~k~~~L~~~G~s~~~v~~l~~~~ 249 (329)
++++-|.+|||+.+++.+.+..+
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 46788889999988887776653
No 31
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=63.09 E-value=19 Score=24.35 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=31.7
Q ss_pred CCcchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhC
Q 020213 7 QNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSI 54 (329)
Q Consensus 7 ~~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~ 54 (329)
...+..++-|.++||++.++...++..- .+++..++||.+.
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~~-------~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMSQ 67 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHTC
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 3346678889999999999998888652 4678888888874
No 32
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=62.32 E-value=14 Score=23.14 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHCCC-ChhhHHHHHHhCCCcccccchhhHhHHHHHHHH
Q 020213 78 EKLVPMVECLATLGT-KPYEVASAITRFPPILSHSVEEKLCPLLAFFQA 125 (329)
Q Consensus 78 ~~l~~~l~~L~~lG~-~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~ 125 (329)
....+.++-|.++|+ +.....+++..+ . +++...+++|-.
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t----~----gnve~Ave~L~~ 49 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIAT----G----GDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHH----T----SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHh----C----CCHHHHHHHHHH
Confidence 445566677777777 555555555543 1 234455666544
No 33
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=61.46 E-value=56 Score=25.50 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=86.1
Q ss_pred hHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCC-ChhHHHhhCCCccccccccchHHHHHHHHH
Q 020213 11 SVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILER-KLPNVVSKCPKILTLGLNEKLVPMVECLAT 89 (329)
Q Consensus 11 ~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~-~i~~i~~~~P~lL~~~~~~~l~~~l~~L~~ 89 (329)
..+++|..-.-|..++..-+.+. ..+++.+...++.|...|+-++ ...+.+.+. -.. . ...-.....-|+.
T Consensus 22 ~Al~~Ls~r~~s~~EL~~KL~~k----g~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~--~~~-~-~~G~~~I~~eL~~ 93 (162)
T 3dfg_A 22 RALGLLVHREHSKKELNRKLQAR----GIEPEAAQAAVERLAGEGWQDDVRFAASVVRN--RAS-S-GYGPLHIRAELGT 93 (162)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHH--HHT-T-TCCHHHHHHHHHH
T ss_pred HHHHHhhchhhhHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHH-c-cccHHHHHHHHHH
Confidence 46778888888999998888765 4677889999999999987554 344444332 111 1 1334566778899
Q ss_pred CCCChhhHHHHHHhCCCcccccchhhHhHHHHHHH-HCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhhcCCCchh
Q 020213 90 LGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQ-ALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREG 168 (329)
Q Consensus 90 lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~-~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~G~~~~~ 168 (329)
-|++.+.+..++.... . +........++ .+|- ..| .+. ..-...+.||..-||+. +
T Consensus 94 KGI~~~~I~~al~~~~----~---de~e~a~~l~~Kk~~~----------~~~----~~~-~~k~K~~~~L~rrGF~~-~ 150 (162)
T 3dfg_A 94 HGLDSDAVSAAMATFE----G---DWTENALDLIRRRFGE----------DGP----VDL-AQRRKAADLLARRGFDG-N 150 (162)
T ss_dssp TTCCHHHHHHHHTTCC----S---CHHHHHHHHHHHHHCT----------TCC----CSH-HHHHHHHHHHHHTTCCH-H
T ss_pred cCCCHHHHHHHHHhCc----H---hHHHHHHHHHHHhcCC----------CCC----CCH-HHHHHHHHHHHHCCCCH-H
Confidence 9999999999887753 1 12222223332 1211 011 122 23456778999999985 4
Q ss_pred hHHHHHHhcC
Q 020213 169 MIGKVLVKHP 178 (329)
Q Consensus 169 ~i~~ll~~~p 178 (329)
.|..++...|
T Consensus 151 ~I~~~l~~~~ 160 (162)
T 3dfg_A 151 SIRLATRFDL 160 (162)
T ss_dssp HHHHHTTC--
T ss_pred HHHHHHhcCc
Confidence 7777776544
No 34
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=60.64 E-value=15 Score=22.28 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=23.0
Q ss_pred chhHhHHHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHH
Q 020213 149 ESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLK 197 (329)
Q Consensus 149 ~~~l~~~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~ 197 (329)
++..+..++-|.++||+..+.+.+++.... .++...+++|.
T Consensus 4 ~~~~~~~i~~L~~MGF~d~~~~~~AL~~~~--------gnv~~Ave~L~ 44 (46)
T 2bwb_A 4 EERYEHQLRQLNDMGFFDFDRNVAALRRSG--------GSVQGALDSLL 44 (46)
T ss_dssp HHHTHHHHHHHHHTTCCCHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHhC--------CCHHHHHHHHH
Confidence 345677777788888753333455555422 24555555553
No 35
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=60.59 E-value=8.2 Score=22.29 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=18.0
Q ss_pred chhHHHHHHhCCChhHHHHHHHhC
Q 020213 226 SPNFTFLKRCGFADGQIAALVAAY 249 (329)
Q Consensus 226 ~~k~~~L~~~G~s~~~v~~l~~~~ 249 (329)
.++++-|.++||+.+++.+.+..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 457788888899988887666554
No 36
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=59.86 E-value=8 Score=24.21 Aligned_cols=26 Identities=12% Similarity=0.117 Sum_probs=16.5
Q ss_pred ccccchhHHHHHHhCC-ChhHHHHHHH
Q 020213 222 NKILSPNFTFLKRCGF-ADGQIAALVA 247 (329)
Q Consensus 222 ~~~l~~k~~~L~~~G~-s~~~v~~l~~ 247 (329)
+.....+++-|.+||| +.+.+.+.+.
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~ 35 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALI 35 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3445677788888888 5555554443
No 37
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=58.69 E-value=18 Score=23.17 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=27.1
Q ss_pred cchhHhHHHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHH
Q 020213 148 IESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS 198 (329)
Q Consensus 148 ~~~~l~~~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~ 198 (329)
.++.++..++-|.++||+..+.+.+++...- .++...+++|.+
T Consensus 13 pe~~~~~qi~~L~~MGF~d~~~~~~AL~~~~--------gnve~Ave~L~~ 55 (58)
T 1wr1_B 13 PEERYEHQLRQLNDMGFFDFDRNVAALRRSG--------GSVQGALDSLLN 55 (58)
T ss_dssp HHHHTHHHHHHHHHHTCCCHHHHHHHHHHHT--------SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 3556778888888888853334455555432 256667776654
No 38
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.95 E-value=18 Score=22.79 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=25.1
Q ss_pred hHhHHHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHHh
Q 020213 151 KLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSV 199 (329)
Q Consensus 151 ~l~~~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~~ 199 (329)
..++.++-|.++||+..+...+++.... .++...+++|.+.
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~--------Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATG--------GDVDAAVEKLRQS 48 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHT--------SCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcC--------CCHHHHHHHHHhC
Confidence 4567788888888863323355555432 3567777777653
No 39
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=57.68 E-value=49 Score=27.34 Aligned_cols=138 Identities=9% Similarity=0.074 Sum_probs=74.2
Q ss_pred HHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCC-CChhHHHhhCCCccccccccchHHHHHHHHHC
Q 020213 12 VIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILE-RKLPNVVSKCPKILTLGLNEKLVPMVECLATL 90 (329)
Q Consensus 12 v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~-~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~~l 90 (329)
.+++|..-.-|..++..-+.+. ..+++.+...++.|...|+-+ ...++...+. -.... ...-.....-|+.-
T Consensus 67 Al~~Ls~r~~S~~EL~~KL~~k----g~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~--~~~~~-~~G~~~I~~eL~~K 139 (221)
T 3d5l_A 67 MLDYLSYQMRTESDIVKKLKEI----DTPEEFVEPILKKLRGQQLIDDHAYAASYVRT--MINTD-LKGPGIIRQHLRQK 139 (221)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH--HHHHC-CCCHHHHHHHHHHT
T ss_pred HHHHhccccccHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHhc-cccHHHHHHHHHHc
Confidence 3455555566666666665554 345667777788887776643 3344433332 11101 12344556677778
Q ss_pred CCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhhcCCCchhhH
Q 020213 91 GTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMI 170 (329)
Q Consensus 91 G~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~G~~~~~~i 170 (329)
|++.+.+..++...+ -++.........+ +-....+. .+........+.||..-||+. +.|
T Consensus 140 GI~~~~I~~al~~~~------~~~e~e~a~~l~~----------Kk~~~~~~---~~~~~~k~K~~~~L~rrGFs~-~~I 199 (221)
T 3d5l_A 140 GIGESDIDDALTQFT------PEVQAELAKKLAL----------KLFRRYRN---QPERRREQKVQQGLTTKGFSS-SVY 199 (221)
T ss_dssp TCCHHHHHHHGGGCC------HHHHHHHHHHHHH----------HHHHHTTT---SCHHHHHHHHHHHHHHTTCCH-HHH
T ss_pred CCCHHHHHHHHHhCC------HHHHHHHHHHHHH----------HHHhhccC---CChHHHHHHHHHHHHhCCCCH-HHH
Confidence 888877777666541 1211211111211 11222221 122234677888999999985 477
Q ss_pred HHHHHh
Q 020213 171 GKVLVK 176 (329)
Q Consensus 171 ~~ll~~ 176 (329)
..++..
T Consensus 200 ~~vl~~ 205 (221)
T 3d5l_A 200 EMIKDE 205 (221)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 777764
No 40
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=54.63 E-value=8.7 Score=24.98 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=28.9
Q ss_pred hHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhC
Q 020213 11 SVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSI 54 (329)
Q Consensus 11 ~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~ 54 (329)
.-+.-|-++||+..++.+.++... .++++.++||-++
T Consensus 21 e~V~~LvsMGFs~~qA~kALKat~-------~NvErAaDWLFSH 57 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhC
Confidence 346677789999999988887653 6788888888776
No 41
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=53.67 E-value=15 Score=23.05 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=17.1
Q ss_pred cchhHHHHHHhCCChhHHHHHHH
Q 020213 225 LSPNFTFLKRCGFADGQIAALVA 247 (329)
Q Consensus 225 l~~k~~~L~~~G~s~~~v~~l~~ 247 (329)
...+++-|.++||+.+++.+.+.
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~ 31 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALV 31 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHH
Confidence 45677888888888888876654
No 42
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=53.32 E-value=27 Score=21.66 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=17.1
Q ss_pred ccchHHHHHHHHHCCC-ChhhHHHHHHh
Q 020213 77 NEKLVPMVECLATLGT-KPYEVASAITR 103 (329)
Q Consensus 77 ~~~l~~~l~~L~~lG~-~~~~~~~~l~~ 103 (329)
+....+.++-|.++|+ +.....+++..
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~ 36 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIA 36 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455677777777777 55555555554
No 43
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=53.17 E-value=36 Score=21.23 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=17.6
Q ss_pred chHHHHHHHHHCCCChhhHHHHHHhC
Q 020213 79 KLVPMVECLATLGTKPYEVASAITRF 104 (329)
Q Consensus 79 ~l~~~l~~L~~lG~~~~~~~~~l~~~ 104 (329)
.+...|+-|-++|++++++.+.+...
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a 35 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIA 35 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 44567777777777777777776653
No 44
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=51.89 E-value=26 Score=24.33 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=31.4
Q ss_pred chHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhC
Q 020213 10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSI 54 (329)
Q Consensus 10 ~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~ 54 (329)
+..++-|.++||++.++.+.++..- .+++..+++|.+.
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh 67 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhC
Confidence 4678899999999999999888652 4588889999876
No 45
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.68 E-value=11 Score=24.67 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=28.2
Q ss_pred chhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHH
Q 020213 226 SPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEV 271 (329)
Q Consensus 226 ~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~ 271 (329)
...++.|.+|||+.+++.+.+..+= .++..-++||...
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~--------~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG--------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT--------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHHC
Confidence 5578899999999999887666542 3566677888764
No 46
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=51.23 E-value=61 Score=26.70 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=30.1
Q ss_pred CCcchHHHHHHh-CCCChhHHHHHHHhhhc-ccCCcchhhHHHHHHHHhC-CCCCCChhHHHh
Q 020213 7 QNGNSVIWFLKD-RGFNDRTIHDMFKRCKR-LQGVEKDRAADNWAYLKSI-GILERKLPNVVS 66 (329)
Q Consensus 7 ~~~~~v~~~L~~-~G~s~~~i~~i~~~~p~-ll~~~~~~l~~~~~~L~~~-G~~~~~i~~i~~ 66 (329)
....+++.+|.+ -|+-+..+..|+..... -+. ..-+....+.|.+. |+.++...+|+.
T Consensus 81 ~~Er~lf~~L~sv~GIGpk~A~~Ils~~~~~~l~--~aI~~~d~~~L~~vpGIG~KtA~rIi~ 141 (212)
T 2ztd_A 81 GETRDLFLTLLSVSGVGPRLAMAALAVHDAPALR--QVLADGNVAALTRVPGIGKRGAERMVL 141 (212)
T ss_dssp HHHHHHHHHHHTSTTCCHHHHHHHHHHSCHHHHH--HHHHTTCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCCcCHHHHHHHHHhCCHHHHH--HHHHhCCHHHHhhCCCCCHHHHHHHHH
Confidence 344566777777 47777777777765421 000 00112223445554 666555555553
No 47
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=50.74 E-value=34 Score=21.32 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=16.5
Q ss_pred cCCcchHHHHHHhCCCChhHHHHHHHh
Q 020213 6 SQNGNSVIWFLKDRGFNDRTIHDMFKR 32 (329)
Q Consensus 6 ~~~~~~v~~~L~~~G~s~~~i~~i~~~ 32 (329)
..++++-++-|-++||++.++.+.+..
T Consensus 8 ~~~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 8 LENVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp ---CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445566667777777777777766654
No 48
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.58 E-value=39 Score=21.31 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=23.1
Q ss_pred chhHhHHHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHHh
Q 020213 149 ESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSV 199 (329)
Q Consensus 149 ~~~l~~~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~~ 199 (329)
++.....+.-|.++||.-.+.-.++++++. ..+...++.|.+.
T Consensus 6 ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~--------gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 6 SGQTAALMAHLFEMGFCDRQLNLRLLKKHN--------YNILQVVTELLQL 48 (54)
T ss_dssp CTTHHHHHHHHHHHTCCCHHHHHHHHTTTT--------TCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcCCCcHHHHHHHHHHcC--------CCHHHHHHHHHhc
Confidence 345666777777777742222334455443 2455555555554
No 49
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=50.20 E-value=9.4 Score=25.85 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=28.5
Q ss_pred cchhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHH
Q 020213 225 LSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVE 270 (329)
Q Consensus 225 l~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~ 270 (329)
.+.+++-|.+|||+.+++.+.+.++- .++..-++||..
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~--------~nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAAD--------DDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHT--------SCHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHH
Confidence 57789999999999999987777532 355666677764
No 50
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=48.49 E-value=34 Score=26.48 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=45.4
Q ss_pred CCCCCChhHHHhhCCCccccccccchHHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCc---h
Q 020213 55 GILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPE---K 131 (329)
Q Consensus 55 G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~---~ 131 (329)
|.|.+...- -...|..+..+.+ .+.+.+--|..-|+++++|+-+++..-.+-....- +=+...+.|++-|+.+ +
T Consensus 12 G~S~S~~P~-~~~~P~W~~~~~e-eVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~v-tG~kI~rILk~~glapeiPE 88 (153)
T 2xzm_O 12 GISGSALPF-KRRSPKWLHMTPS-TVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFL-TGQKILRILKKNGCAPQLPE 88 (153)
T ss_dssp CCCCCCCCS-CCSCCSSCCCCHH-HHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHH-HSSCHHHHHHHTTCCCSSCH
T ss_pred CccCCCCCC-CCCCCccccCCHH-HHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeee-ccchHHHHHHHcCCCCCCcH
Confidence 555544331 2346777777764 67888888888888888888777764332221110 0012455666666543 4
Q ss_pred hhhhhHh
Q 020213 132 QLGRMIL 138 (329)
Q Consensus 132 ~l~~~l~ 138 (329)
|+..++.
T Consensus 89 DL~~Lik 95 (153)
T 2xzm_O 89 DLYFLIK 95 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 51
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=48.40 E-value=35 Score=23.75 Aligned_cols=40 Identities=5% Similarity=0.128 Sum_probs=25.7
Q ss_pred chHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHH
Q 020213 10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLK 52 (329)
Q Consensus 10 ~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~ 52 (329)
..+-+|-+..|+|+.+|..|-..+|. -..|...+.+..+.
T Consensus 13 ~~wK~~~R~LGlse~~Id~I~~~~~~---d~~Eq~~qmL~~W~ 52 (86)
T 3oq9_A 13 QEAKKFARENNIKEGKIDEIMHDSIQ---DTAEQKVQLLLCWY 52 (86)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHTCTT---CCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHhHHHHHHHhCCC---ChHHHHHHHHHHHH
Confidence 45667778888888888888888874 11244444444444
No 52
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.40 E-value=12 Score=22.75 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=19.7
Q ss_pred chhHHHHHHhCCChhHHHHHHHhC
Q 020213 226 SPNFTFLKRCGFADGQIAALVAAY 249 (329)
Q Consensus 226 ~~k~~~L~~~G~s~~~v~~l~~~~ 249 (329)
...++-|.+|||+.+++.+.+..+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~ 33 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT 33 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 567788889999999888777765
No 53
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.00 E-value=28 Score=22.51 Aligned_cols=41 Identities=7% Similarity=0.096 Sum_probs=30.6
Q ss_pred CCcchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhC
Q 020213 7 QNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSI 54 (329)
Q Consensus 7 ~~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~ 54 (329)
+-.+..++-|.++||+..++.+.+...- .+++..++||.+.
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~-------~nve~A~e~L~~~ 47 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATN-------NSLERAVDWIFSH 47 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTT-------SCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhC
Confidence 3345667888889999999998887652 2577788888764
No 54
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.97 E-value=12 Score=26.29 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=15.0
Q ss_pred CcchHHHHHHhCCCChhHHHHHHHhh
Q 020213 8 NGNSVIWFLKDRGFNDRTIHDMFKRC 33 (329)
Q Consensus 8 ~~~~v~~~L~~~G~s~~~i~~i~~~~ 33 (329)
+++.|.+||++.|+.+ +..++.+|
T Consensus 23 sp~~VadWLkk~g~~~--cd~lv~Kh 46 (90)
T 2eap_A 23 DPDSLADYFKKLNYKD--CEKAVKKY 46 (90)
T ss_dssp CTTTHHHHHHHTTCHH--HHHHHHHT
T ss_pred CHHHHHHHHHHcCCch--HHHHHHHh
Confidence 4666777777777766 45555444
No 55
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.49 E-value=17 Score=23.68 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=31.3
Q ss_pred cchhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhC
Q 020213 225 LSPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMG 273 (329)
Q Consensus 225 l~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g 273 (329)
-...++-|.+|||+.+++.+.++.+- .++..-++||...+.
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATN--------NSLERAVDWIFSHID 49 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTT--------SCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhCCC
Confidence 36678899999999999988877652 246677888887654
No 56
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=45.67 E-value=15 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=18.1
Q ss_pred cchhHHHHHHhCCChhHHHHHHH
Q 020213 225 LSPNFTFLKRCGFADGQIAALVA 247 (329)
Q Consensus 225 l~~k~~~L~~~G~s~~~v~~l~~ 247 (329)
+...+.-|.++||+.+++.+.+.
T Consensus 4 ~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 4 LSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHH
Confidence 56778888899999998876643
No 57
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=45.35 E-value=17 Score=25.28 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=32.2
Q ss_pred chhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhC
Q 020213 226 SPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMG 273 (329)
Q Consensus 226 ~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g 273 (329)
..+++-|.+|||+.+++.+.++.+- ..+..-++||....|
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~--------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG--------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT--------TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhCCC
Confidence 5789999999999999987766443 357778899998777
No 58
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=45.20 E-value=33 Score=23.21 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=27.1
Q ss_pred chhHhHHHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHH
Q 020213 149 ESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS 198 (329)
Q Consensus 149 ~~~l~~~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~ 198 (329)
+..++..++-|.++||...+.+.+++...- .++...+++|..
T Consensus 26 e~~ye~qi~qL~eMGF~dr~~~~~AL~~t~--------Gnve~Ave~L~~ 67 (74)
T 1vej_A 26 EGRYQQELEELKALGFANRDANLQALVATD--------GDIHAAIEMLLG 67 (74)
T ss_dssp TTTSHHHHHHHHHHTCCCHHHHHHHHHHTT--------SCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 456777888888888853345556665532 356777777765
No 59
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.19 E-value=48 Score=21.51 Aligned_cols=41 Identities=7% Similarity=0.126 Sum_probs=30.9
Q ss_pred cchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCC
Q 020213 9 GNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGI 56 (329)
Q Consensus 9 ~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~ 56 (329)
.+..++-|.++||+..++.+.+...- .+++..++||.+...
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~-------~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTSNK 49 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCCC
Confidence 34567888999999999988877542 367888899887533
No 60
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.17 E-value=39 Score=22.01 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=30.9
Q ss_pred cchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCC
Q 020213 9 GNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIG 55 (329)
Q Consensus 9 ~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G 55 (329)
....++-|.++||+...+.+.+...-. .+++..++||.++.
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n------~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 9 SPSLLEPLLAMGFPVHTALKALAATGR------KTAEEALAWLHDHC 49 (64)
T ss_dssp SCSSHHHHHHTSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCC
Confidence 344567888899999999988875421 36788899998863
No 61
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=44.94 E-value=38 Score=22.04 Aligned_cols=52 Identities=8% Similarity=0.003 Sum_probs=30.4
Q ss_pred HHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhHHH
Q 020213 14 WFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVV 65 (329)
Q Consensus 14 ~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~i~ 65 (329)
++-+..|+|.+.+.+++...+.-...+++......+....+|..+....+-+
T Consensus 5 diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~~l 56 (65)
T 1uxc_A 5 EIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGL 56 (65)
T ss_dssp HHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC------
T ss_pred HHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 4445678888888888876651112445555666667777788777655433
No 62
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=44.74 E-value=18 Score=24.41 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=27.2
Q ss_pred chhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHH
Q 020213 226 SPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVE 270 (329)
Q Consensus 226 ~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~ 270 (329)
..+++.|.+|||+.+++.+.++.+- .++..-++||..
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG--------GDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT--------SCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 5678899999999999887766543 355566677765
No 63
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=44.28 E-value=6.4 Score=24.09 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=18.5
Q ss_pred chhHHHHHHhCCChhHHHHHHHhCc
Q 020213 226 SPNFTFLKRCGFADGQIAALVAAYP 250 (329)
Q Consensus 226 ~~k~~~L~~~G~s~~~v~~l~~~~P 250 (329)
++.++-|..+||+..++.+.+..+-
T Consensus 5 ~eaI~rL~~mGF~~~~a~~Al~a~~ 29 (47)
T 1dv0_A 5 KEAIERLKALGFPESLVIQAYFACE 29 (47)
T ss_dssp HHHHTTTTTTTCCHHHHHHHHTTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 4567777889999988887765553
No 64
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=44.14 E-value=51 Score=22.06 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=29.7
Q ss_pred cchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhC
Q 020213 9 GNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSI 54 (329)
Q Consensus 9 ~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~ 54 (329)
....++-|.++||+..++.+.++..- .+++..++||.+.
T Consensus 29 ~~~~v~~L~~MGF~~~~a~~AL~~t~-------~nve~Ave~L~~~ 67 (73)
T 1wiv_A 29 DQSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNN 67 (73)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHhC
Confidence 34567888899999999988887542 3678888888875
No 65
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=43.66 E-value=41 Score=26.08 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=14.0
Q ss_pred cCCcchhhHHHHHHHHhCCCCCCChhHHHh
Q 020213 37 QGVEKDRAADNWAYLKSIGILERKLPNVVS 66 (329)
Q Consensus 37 l~~~~~~l~~~~~~L~~~G~~~~~i~~i~~ 66 (329)
+..+++++++.+.-|...|+++++|+-++.
T Consensus 28 ~~~~~eeVe~~I~klakkG~tpSqIG~iLR 57 (153)
T 2xzm_O 28 LHMTPSTVVDLSVKLAKKGLTPSQIGVILR 57 (153)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCCHHHhhhHHh
Confidence 334444444444444444554444444443
No 66
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=43.23 E-value=1.1e+02 Score=23.65 Aligned_cols=87 Identities=10% Similarity=0.044 Sum_probs=46.7
Q ss_pred hHHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchh-hhhhHhhCCceeccCcchhHhHHHHH
Q 020213 80 LVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQ-LGRMILLNPRLISYSIESKLTETVDF 158 (329)
Q Consensus 80 l~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~-l~~~l~~~P~il~~~~~~~l~~~~~~ 158 (329)
....+.+|..-.-|..++..-+.+. +.+. +.+...++.|.+.|+-++. .+......- + .... .-.....-
T Consensus 20 ~~~Al~~Ls~r~~s~~EL~~KL~~k----g~~~-e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~-~-~~~~--G~~~I~~e 90 (162)
T 3dfg_A 20 VQRALGLLVHREHSKKELNRKLQAR----GIEP-EAAQAAVERLAGEGWQDDVRFAASVVRNR-A-SSGY--GPLHIRAE 90 (162)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHT----TCCH-HHHHHHHHHHHHTTSCCHHHHHHHHHHHH-H-TTTC--CHHHHHHH
T ss_pred HHHHHHHhhchhhhHHHHHHHHHhc----CCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHH-H-Hccc--cHHHHHHH
Confidence 3455666666667777777766664 4443 3577777777777765433 333332221 0 0111 12334455
Q ss_pred HhhcCCCchhhHHHHHHh
Q 020213 159 LTSLGLAREGMIGKVLVK 176 (329)
Q Consensus 159 l~~~G~~~~~~i~~ll~~ 176 (329)
|..-|++ .+.|..++..
T Consensus 91 L~~KGI~-~~~I~~al~~ 107 (162)
T 3dfg_A 91 LGTHGLD-SDAVSAAMAT 107 (162)
T ss_dssp HHHTTCC-HHHHHHHHTT
T ss_pred HHHcCCC-HHHHHHHHHh
Confidence 6667776 3355555544
No 67
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=43.13 E-value=45 Score=22.05 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=27.3
Q ss_pred cchhHhHHHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHH
Q 020213 148 IESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS 198 (329)
Q Consensus 148 ~~~~l~~~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~ 198 (329)
.+..++..++-|.++||...+...++++..- .++...+++|.+
T Consensus 15 pe~~y~~ql~qL~~MGF~d~~an~~AL~at~--------Gnve~Ave~L~~ 57 (67)
T 2dna_A 15 PEVRFSKEMECLQAMGFVNYNANLQALIATD--------GDTNAAIYKLKS 57 (67)
T ss_dssp HHHHTHHHHHHHHHHTCCCHHHHHHHHHHTT--------SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHcC--------CCHHHHHHHHHh
Confidence 3556777888888888863333345555422 367777777776
No 68
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.00 E-value=40 Score=23.43 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=30.8
Q ss_pred hHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCC
Q 020213 11 SVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILE 58 (329)
Q Consensus 11 ~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~ 58 (329)
..++-|.++||++.++.+.+... -.+++..++||.++....
T Consensus 23 ~~I~qL~~MGF~~~~a~~AL~~~-------n~n~e~A~ewL~~h~~D~ 63 (85)
T 2dkl_A 23 RLIKQLTDMGFPREPAEEALKSN-------NMNLDQAMSALLEKKVDV 63 (85)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHT-------TSCHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc-------CCCHHHHHHHHHHCcCCc
Confidence 44566888999999998888533 246788999998875543
No 69
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=39.65 E-value=54 Score=21.30 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=29.5
Q ss_pred hHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCC
Q 020213 11 SVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIG 55 (329)
Q Consensus 11 ~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G 55 (329)
+.++-|.++||+..++.+.+.... -.+++..+++|.+..
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~------~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTG------GRSVQTACDWLFSHS 59 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTT------TSCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC------CCCHHHHHHHHHhCC
Confidence 456778889999999988887542 136788889988753
No 70
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.37 E-value=1.3e+02 Score=23.19 Aligned_cols=138 Identities=12% Similarity=0.063 Sum_probs=80.5
Q ss_pred hHHHHHHhCCCChhHHHHHHHhh------hcccCCcchhhHHHHHHHHhCCCCC-CChhHHHhhCCCccccccccchHHH
Q 020213 11 SVIWFLKDRGFNDRTIHDMFKRC------KRLQGVEKDRAADNWAYLKSIGILE-RKLPNVVSKCPKILTLGLNEKLVPM 83 (329)
Q Consensus 11 ~v~~~L~~~G~s~~~i~~i~~~~------p~ll~~~~~~l~~~~~~L~~~G~~~-~~i~~i~~~~P~lL~~~~~~~l~~~ 83 (329)
..+.+|..-.-|..++..-+.+. |.-...+++.+...++.|...|+-+ ...+....+.- .... ......
T Consensus 10 ~Al~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~--~~~g--~G~~~I 85 (159)
T 3c1d_A 10 RAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASR--SRKG--YGPARI 85 (159)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH--HHTT--CCHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH--HhCC--ccHHHH
Confidence 35667777788888888877652 1111256788999999999998754 44555444421 1111 234566
Q ss_pred HHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHH-HCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhhc
Q 020213 84 VECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQ-ALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSL 162 (329)
Q Consensus 84 l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~-~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~ 162 (329)
..-|+.-|++.+.+..++..... + .........+ .+|- + ...+. ..-...+.||..-
T Consensus 86 ~~eL~~KGI~~~~i~~al~~~~~------d-~~~~a~~l~~kk~~~------------~--~~~~~-~~~~K~~~~L~rr 143 (159)
T 3c1d_A 86 RQELNQKGISREATEKAMREADI------D-WAALARDQATRKYGE------------P--LPTVF-SEKVKIQRFLLYR 143 (159)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHCC------C-HHHHHHHHHHHHHCS------------S--CCCSH-HHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHcCH------h-HHHHHHHHHHHHcCC------------C--CCCCH-HHHHHHHHHHHHC
Confidence 77888999999999888876532 1 1222222222 1211 0 01222 2356677888899
Q ss_pred CCCchhhHHHHHH
Q 020213 163 GLAREGMIGKVLV 175 (329)
Q Consensus 163 G~~~~~~i~~ll~ 175 (329)
||+. +.|.+++.
T Consensus 144 GF~~-~~i~~~l~ 155 (159)
T 3c1d_A 144 GYLM-EDIQDIWR 155 (159)
T ss_dssp TCCH-HHHTTCC-
T ss_pred CCCH-HHHHHHHH
Confidence 9985 46655443
No 71
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=39.33 E-value=6.4 Score=29.19 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=44.6
Q ss_pred hHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchHHHHHHHHHCCCChhhHHHHH
Q 020213 24 RTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAI 101 (329)
Q Consensus 24 ~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~~lG~~~~~~~~~l 101 (329)
....+.+...-.+-..+++.....++.|.+.|+.+..+.+|..-+|.=. +.+...+.-+.+..++++++.+++
T Consensus 32 ~~~~ktl~y~~~Fsk~~~e~a~~l~e~L~~~~l~~~~~a~IanL~P~~~-----dElrali~s~e~~~~~deeL~~IL 104 (113)
T 4ayb_F 32 NLLQRTYDYLNSVEKCDAESAQKVVEELSSIISREDVRAVLASICPITP-----DEVRSILIMDSNRTYTSEDIQKII 104 (113)
T ss_dssp TTHHHHHHHTTTTCSSCHHHHHHHHHHHHTTCCCHHHHHHHHHHCCCSS-----CCCCTTTTTTCCCCCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCH-----HHHHHHHHhhccCCCCHHHHHHHH
Confidence 3455666655555566788888888888888888877888887776421 123333333334445555555544
No 72
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=38.47 E-value=22 Score=27.51 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=46.0
Q ss_pred CCCCCChhHHHhhCCCccccccccchHHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCC---ch
Q 020213 55 GILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVP---EK 131 (329)
Q Consensus 55 G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~---~~ 131 (329)
|.|.+...- -...|..+..+.+ .+.+.+--|..-|+++++|+-+++..-.+-....- +=+...+.|++-|+. ++
T Consensus 10 G~S~S~~P~-~~~~P~W~~~~~e-eVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~v-tG~kI~rILk~~glapeiPE 86 (151)
T 3u5c_N 10 GISSSAIPY-SRNAPAWFKLSSE-SVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVI-TGNKIMRILKSNGLAPEIPE 86 (151)
T ss_dssp CCCCCCCCS-CCSCCSSCCSCHH-HHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHH-SSSCHHHHHHHTTCCCSSCH
T ss_pred CCCCCCCCC-CCCCCCCcCCCHH-HHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeee-cccHHHHHHHhCCCCCCCcH
Confidence 554444331 2345677777754 67777777777777777777777653222111110 002345667776665 35
Q ss_pred hhhhhHhhC
Q 020213 132 QLGRMILLN 140 (329)
Q Consensus 132 ~l~~~l~~~ 140 (329)
|+..++.+.
T Consensus 87 DL~~LikKA 95 (151)
T 3u5c_N 87 DLYYLIKKA 95 (151)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
No 73
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=37.04 E-value=26 Score=22.06 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=18.2
Q ss_pred cchhHHHHHHhCCChhHHHHHHH
Q 020213 225 LSPNFTFLKRCGFADGQIAALVA 247 (329)
Q Consensus 225 l~~k~~~L~~~G~s~~~v~~l~~ 247 (329)
....+.-|.++||+.+++.+.+.
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ 29 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALV 29 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHH
Confidence 46678889999999999886543
No 74
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=36.75 E-value=50 Score=24.25 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=12.8
Q ss_pred hHHHHHHhCCCChhHHHHHHHhhh
Q 020213 11 SVIWFLKDRGFNDRTIHDMFKRCK 34 (329)
Q Consensus 11 ~v~~~L~~~G~s~~~i~~i~~~~p 34 (329)
.+-.|.+.+|+++.+|..|-..+|
T Consensus 27 ~WK~~aRkLGLse~~Id~Ie~~~~ 50 (112)
T 1ich_A 27 RWKEFVKRLGLSDHEIDRLELQNG 50 (112)
T ss_dssp THHHHHHHHTCCHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHCc
Confidence 444555555555555555555444
No 75
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=36.71 E-value=41 Score=26.04 Aligned_cols=31 Identities=3% Similarity=0.098 Sum_probs=16.4
Q ss_pred cCCcchhhHHHHHHHHhCCCCCCChhHHHhh
Q 020213 37 QGVEKDRAADNWAYLKSIGILERKLPNVVSK 67 (329)
Q Consensus 37 l~~~~~~l~~~~~~L~~~G~~~~~i~~i~~~ 67 (329)
+..+++++++.+.-|...|+++++|+-++..
T Consensus 26 ~~~~~eeVe~~I~klakkG~tpSqIG~iLRD 56 (151)
T 3u5c_N 26 FKLSSESVIEQIVKYARKGLTPSQIGVLLRD 56 (151)
T ss_dssp CCSCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCHHHhhhHHhc
Confidence 3444555555555555555555555555543
No 76
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=36.31 E-value=57 Score=23.77 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=27.2
Q ss_pred hhHhHHHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHHhC
Q 020213 150 SKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKSVG 200 (329)
Q Consensus 150 ~~l~~~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~~g 200 (329)
...+..++-|.++||+.++...+++...- .++...+++|.+.|
T Consensus 64 ~~~~~qL~qL~eMGF~d~~~ni~AL~~t~--------Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 64 SQWQPQLQQLRDMGIQDDELSLRALQATG--------GDIQAALELIFAGG 106 (108)
T ss_dssp CTTHHHHHHHHTTTCCCHHHHHHHHHHHT--------SCHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHcCCCCHHHHHHHHHHhC--------CCHHHHHHHHHhcC
Confidence 35677888888888853334555555422 35777777777643
No 77
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.72 E-value=27 Score=23.55 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=30.6
Q ss_pred chhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhC
Q 020213 226 SPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMG 273 (329)
Q Consensus 226 ~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g 273 (329)
...++-|.+|||+.+.+.+.+..+- -..+..-++||..++.
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~-------n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTG-------NSGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHT-------SCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCCHHHHHHHHHhCCC
Confidence 5678889999999998887765442 1257778899998664
No 78
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.68 E-value=94 Score=20.05 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=30.4
Q ss_pred cchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhC
Q 020213 9 GNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSI 54 (329)
Q Consensus 9 ~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~ 54 (329)
....+.-|.++||+..++.+.+...- -.+++..++||.+.
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~------~~nve~A~ewLl~~ 48 (64)
T 1whc_A 9 ELTALESLIEMGFPRGRAEKALALTG------NQGIEAAMDWLMEH 48 (64)
T ss_dssp CCCHHHHHHTTTCCHHHHHHHHHHHT------SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhc------CCCHHHHHHHHHhC
Confidence 34566778899999999998887441 14678889999875
No 79
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.92 E-value=41 Score=23.21 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=30.2
Q ss_pred chhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhC
Q 020213 226 SPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMG 273 (329)
Q Consensus 226 ~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g 273 (329)
...++-|.+|||+.+.+.+.+..+ + .++..-++||..+++
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t------~--~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLN------H--MSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT------T--SCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh------C--CCHHHHHHHHHHCCC
Confidence 457888999999999988777654 1 356677888887654
No 80
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=29.33 E-value=45 Score=24.62 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=13.8
Q ss_pred hHHHHHHhCCCChhHHHHHHHhhh
Q 020213 11 SVIWFLKDRGFNDRTIHDMFKRCK 34 (329)
Q Consensus 11 ~v~~~L~~~G~s~~~i~~i~~~~p 34 (329)
.+.+|-+..|+++.+|..|...+|
T Consensus 22 ~wK~laR~LGlse~~Id~I~~d~~ 45 (115)
T 3ezq_A 22 QVKGFVRKNGVNEAKIDEIKNDNV 45 (115)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCHhhHHHHHHcCC
Confidence 344555556666666666655555
No 81
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=29.27 E-value=84 Score=23.33 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=14.4
Q ss_pred chHHHHHHhCCCChhHHHHHHHhhh
Q 020213 10 NSVIWFLKDRGFNDRTIHDMFKRCK 34 (329)
Q Consensus 10 ~~v~~~L~~~G~s~~~i~~i~~~~p 34 (329)
..+-.+-+.+|++..+|..|-..+|
T Consensus 18 ~~Wk~LAR~LGlse~dId~Ie~~~p 42 (122)
T 3ezq_B 18 KDWRRLARQLKVSDTKIDSIEDRYP 42 (122)
T ss_dssp TTHHHHHHHTTCCHHHHHHHHHHCS
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHCC
Confidence 3445555666666666666655554
No 82
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=29.03 E-value=14 Score=28.97 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=35.5
Q ss_pred cchhhHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchHHHHHHHHHCCCChhhHHHHH
Q 020213 40 EKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAI 101 (329)
Q Consensus 40 ~~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~~lG~~~~~~~~~l 101 (329)
+++.+....+.|.++|+.+.++..|+.-+|.= . ..+...+.-++. -++++++.+++
T Consensus 86 ~~e~~~~l~e~L~~~~L~~~E~a~L~NL~P~t----~-dEar~lipsl~~-r~sdEeLe~IL 141 (152)
T 2c35_A 86 NRETIASVRSLLLQKKLHKFELACLANLCPET----A-EESKALIPSLEG-RFEDEELQQIL 141 (152)
T ss_dssp SHHHHHHHHHHHHTSSCCHHHHHHHHHHCCSS----H-HHHHHHCGGGTT-TSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHhccCCCCC----H-HHHHHHHHhhcc-CCCHHHHHHHH
Confidence 67778888888888888888888888877762 1 123333333332 24555555544
No 83
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=28.95 E-value=2.1e+02 Score=22.46 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=14.1
Q ss_pred HHHHHHhCCChhHHHHHHHh
Q 020213 229 FTFLKRCGFADGQIAALVAA 248 (329)
Q Consensus 229 ~~~L~~~G~s~~~v~~l~~~ 248 (329)
+.||..-||+.+.|..++..
T Consensus 143 ~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 143 KQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHH
Confidence 35777788888877766543
No 84
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=28.64 E-value=1e+02 Score=19.85 Aligned_cols=17 Identities=12% Similarity=0.026 Sum_probs=7.9
Q ss_pred HCCCChhhHHHHHHhCC
Q 020213 89 TLGTKPYEVASAITRFP 105 (329)
Q Consensus 89 ~lG~~~~~~~~~l~~~P 105 (329)
..|+|...+..++...+
T Consensus 9 ~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 9 LAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHTSCHHHHHHHHHTCT
T ss_pred HHCcCHHHHHHHHcCCC
Confidence 34455444444444433
No 85
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=26.63 E-value=44 Score=23.36 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.6
Q ss_pred hHHHHHHhCCChhHHHHHHHh
Q 020213 228 NFTFLKRCGFADGQIAALVAA 248 (329)
Q Consensus 228 k~~~L~~~G~s~~~v~~l~~~ 248 (329)
.+..++.+|||.++|..++..
T Consensus 8 ~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 8 FIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHH
Confidence 567788999999999998853
No 86
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.33 E-value=44 Score=26.10 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=21.7
Q ss_pred hCCCccccccccchHHHHHHHHHCCCChhhHHHHHHhC
Q 020213 67 KCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRF 104 (329)
Q Consensus 67 ~~P~lL~~~~~~~l~~~l~~L~~lG~~~~~~~~~l~~~ 104 (329)
..|..+..+.+ .+.+.+--|..-|.++++|+-+++..
T Consensus 21 ~~P~W~~~~~e-ev~~~i~klakkG~~pSqIG~~LRD~ 57 (158)
T 3j20_Q 21 APPIWVEYTVE-EIENLVVKLRKEGYSTAMIGTILRDQ 57 (158)
T ss_dssp SCCSSSCCCHH-HHHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCCCcCCCHH-HHHHHHHHHHHCCCCHHHhhHHHhcc
Confidence 44555655543 46666666666666666666666544
No 87
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=26.07 E-value=39 Score=21.85 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=17.8
Q ss_pred chHHHHHHhCCCChhHHHHHHHhh
Q 020213 10 NSVIWFLKDRGFNDRTIHDMFKRC 33 (329)
Q Consensus 10 ~~v~~~L~~~G~s~~~i~~i~~~~ 33 (329)
+.++.-|..+|+++.++.+++...
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 456777777888888888877654
No 88
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=25.10 E-value=66 Score=20.47 Aligned_cols=24 Identities=4% Similarity=0.055 Sum_probs=17.3
Q ss_pred chhHHHHH---HhCCChhHHHHHHHhC
Q 020213 226 SPNFTFLK---RCGFADGQIAALVAAY 249 (329)
Q Consensus 226 ~~k~~~L~---~~G~s~~~v~~l~~~~ 249 (329)
.+.+.++. ++|++.+||.+++..+
T Consensus 13 ~ewl~LI~~Ak~lGlsleEIrefL~l~ 39 (57)
T 1b0n_B 13 QEWVELMVEAKEANISPEEIRKYLLLN 39 (57)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45566665 7899999998877543
No 89
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=24.55 E-value=71 Score=23.12 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=30.6
Q ss_pred HHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhHHHhhCCC
Q 020213 25 TIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKCPK 70 (329)
Q Consensus 25 ~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~ 70 (329)
...+.+...-.+-..++++....++.|.+.|+....+.+|+.-+|.
T Consensus 33 ~~~ktl~y~~kFsk~~~e~a~~l~e~L~~~~l~e~~a~~I~nl~P~ 78 (107)
T 1go3_F 33 EQGCALDYLQKFAKLDKEEAKKLVEELISLGIDEKTAVKIADILPE 78 (107)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 3445555444555567777777777777778777777777776664
No 90
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=24.40 E-value=83 Score=27.51 Aligned_cols=63 Identities=11% Similarity=0.209 Sum_probs=38.7
Q ss_pred CcccccCCcchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCC-CCChhHHHh
Q 020213 1 MEISTSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGIL-ERKLPNVVS 66 (329)
Q Consensus 1 ~~~~~~~~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~-~~~i~~i~~ 66 (329)
|.+.+....-.+.+.-+..|+|.+.+.+++...|. .+++.-+...+..+.+|.. +....+-+.
T Consensus 1 m~~~~~~~~~Ti~diA~~aGVS~~TVSrvLn~~~~---Vs~~tr~rV~~~a~~lgY~~pn~~a~~l~ 64 (366)
T 3h5t_A 1 MSLGRKQQYGTLASIAAKLGISRTTVSNAYNRPEQ---LSAELRQRILDTAEDMGYLGPDPVARSLR 64 (366)
T ss_dssp ------CCTTHHHHHHHHHTSCHHHHHHHHHCGGG---SCHHHHHHHHHHHHHTTC-----------
T ss_pred CCCCccCCCCCHHHHHHHhCCCHHHHHHHHCCCCC---CCHHHHHHHHHHHHHhCCCCCCHHHHHhh
Confidence 55666666667788888899999999999998874 4566667777888899997 666555443
No 91
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=23.70 E-value=62 Score=22.32 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=29.8
Q ss_pred chhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHHHhC
Q 020213 226 SPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVEVMG 273 (329)
Q Consensus 226 ~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~~~g 273 (329)
...++-|.+|||+.+.+.+.+...- ..++..-++||..++.
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t~-------n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINTS-------NAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------TCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHc-------CCCHHHHHHHHHhCCC
Confidence 5678889999999998876655331 1367777888887654
No 92
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=22.85 E-value=58 Score=22.92 Aligned_cols=86 Identities=9% Similarity=0.123 Sum_probs=42.5
Q ss_pred chhHHHHHHHHhCCChhhHHHHHhhcCceeeeccccccchhHHHHHHhCCC--hhHHHHHHHhCchhhcccccchhhhHH
Q 020213 188 RLRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFA--DGQIAALVAAYPPILIKSIKNSLEPRI 265 (329)
Q Consensus 188 ~l~~~~~~l~~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~~~G~s--~~~v~~l~~~~P~iL~~s~~~~i~~k~ 265 (329)
-|...++|...+..+... |.-+.- ++-+.-+.||.++|++ .++|. ..-.-=+.+ + -.-.|+
T Consensus 12 vIdKALDFI~~M~tSas~--------P~sMdE---STAKGifKyL~elGvPas~~dv~----aRg~qegWn-~-gFT~k~ 74 (115)
T 2es9_A 12 AIEKALDFIGGMNTSASV--------PHSMDE---STAKGILKYLHDLGVPVSPEVVV----ARGEQEGWN-P-EFTKKV 74 (115)
T ss_dssp HHHHHHHHHHTSCTTCSS--------CCHHHH---HHHHHHHHHHHHTTCCCCHHHHH----HHHHHTTCC-H-HHHHHH
T ss_pred HHHHHHHHhcccccCCCC--------CCccch---HHHHHHHHHHHHcCCCCCHHHHH----HhcccccCC-h-hHHHHH
Confidence 345556666666555433 333222 2345667788888875 33332 222222333 2 333444
Q ss_pred HHHHHHhCCChhhhhcCCceeecCc
Q 020213 266 KFLVEVMGRQIDEVADYPDFFRHGL 290 (329)
Q Consensus 266 ~fL~~~~g~~~~~i~~~P~~l~~sl 290 (329)
.-+.++|.-...-++++|.|++.-+
T Consensus 75 ~gWAek~esGer~vIKnPEyFstYM 99 (115)
T 2es9_A 75 AGWAEKVASGNRILIKNPEYFSTYM 99 (115)
T ss_dssp HHHHHHHHTTCCCCCSSGGGSCHHH
T ss_pred HHHHHHhccCCeeeecChHHHHHHH
Confidence 4444444333334667888876544
No 93
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=22.46 E-value=38 Score=25.75 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=36.1
Q ss_pred hHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchHHHHHHHHHCCCChhhHHHHHHhCCC
Q 020213 44 AADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPP 106 (329)
Q Consensus 44 l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~~lG~~~~~~~~~l~~~P~ 106 (329)
..++++||.+.-... ..+ .+.+...++.|+.+|+++.++..++.-+|.
T Consensus 56 ~~e~l~YL~~~p~~~--------------~q~-~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~ 103 (136)
T 3ayh_A 56 QFEILKYLSSQGNCE--------------GLT-KERFLDCIAIFNEFELTKAEILVILNNKPS 103 (136)
T ss_dssp HHHHHHHHHTTTCCT--------------TCC-HHHHHHHHHTTTTTCCCHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCCcc--------------ccC-HHHHHHHHHHHHhcCCCHHHHHHHhccCCC
Confidence 455678887652211 123 357888899999999999999999999997
No 94
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=22.17 E-value=87 Score=20.36 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=30.9
Q ss_pred hHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhH
Q 020213 11 SVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPN 63 (329)
Q Consensus 11 ~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~ 63 (329)
..-++-+..|+|.+.+.+++...|. .+++......+....+|+.+....+
T Consensus 11 t~~diA~~aGVS~sTVSr~ln~~~~---vs~~t~~rV~~~a~~lgY~pn~~a~ 60 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRALMNPDK---VSQATRNRVEKAAREVGYLPQPMGR 60 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHTTTCCCC---SCHHHHHHHHHHHHHHCCCC-----
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCCC---CCHHHHHHHHHHHHHhCCCccHHHH
Confidence 3556666688888888888776553 3455556566777777887665544
No 95
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=21.71 E-value=1.8e+02 Score=23.83 Aligned_cols=112 Identities=9% Similarity=0.059 Sum_probs=57.9
Q ss_pred chHHHHHHhCCCChhHHHHHHHhhhcccCCcchh----------------hHHHHHHHHhCCCCCCChhHHHhhCCCccc
Q 020213 10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDR----------------AADNWAYLKSIGILERKLPNVVSKCPKILT 73 (329)
Q Consensus 10 ~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~----------------l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~ 73 (329)
..+.+-|...|++++.|..++.+.-..=..|.+. -...-.-|...|++.+.|...+...
T Consensus 79 ~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~----- 153 (221)
T 3d5l_A 79 SDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDIDDALTQF----- 153 (221)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHHHHGGGC-----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCCHHHHHHHHHhC-----
Confidence 4566677777888777777776543321222211 1112344556677766655555432
Q ss_pred cccccchHHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHHHCCCCchhhhhhHhhC
Q 020213 74 LGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQALGVPEKQLGRMILLN 140 (329)
Q Consensus 74 ~~~~~~l~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~~lG~~~~~l~~~l~~~ 140 (329)
+.++........ +.+.....+. .+....-+..+.+|..-|++.+.|..++...
T Consensus 154 -~~~~e~e~a~~l----------~~Kk~~~~~~---~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 154 -TPEVQAELAKKL----------ALKLFRRYRN---QPERRREQKVQQGLTTKGFSSSVYEMIKDEV 206 (221)
T ss_dssp -CHHHHHHHHHHH----------HHHHHHHTTT---SCHHHHHHHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred -CHHHHHHHHHHH----------HHHHHhhccC---CChHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 111111111111 2222333332 2222234567889999999999998887655
No 96
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=21.49 E-value=21 Score=28.79 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=25.4
Q ss_pred cchhhHHHHHHHHhCCCCCCChhHHHhhCCC
Q 020213 40 EKDRAADNWAYLKSIGILERKLPNVVSKCPK 70 (329)
Q Consensus 40 ~~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~ 70 (329)
+++.+....+.|.+.|+.+.++.+|+.-+|.
T Consensus 122 n~Esa~elre~L~~~kL~efE~aqLaNL~Pe 152 (187)
T 1y14_A 122 DQETVGAVIQLLKSTGLHPFEVAQLGSLACD 152 (187)
T ss_dssp SHHHHHHHHHHHHTTTCCHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHcCcCCCC
Confidence 6788888888888888888888888877775
No 97
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.15 E-value=57 Score=23.59 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=17.8
Q ss_pred cchhHHHHHHh-CCChhHHHHHHHhC
Q 020213 225 LSPNFTFLKRC-GFADGQIAALVAAY 249 (329)
Q Consensus 225 l~~k~~~L~~~-G~s~~~v~~l~~~~ 249 (329)
++++|..|.++ ||+.+++...|..+
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ 64 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDC 64 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHc
Confidence 56777777777 88888777665544
No 98
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=20.79 E-value=30 Score=23.90 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=29.4
Q ss_pred cccCCcchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCC
Q 020213 4 STSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGI 56 (329)
Q Consensus 4 ~~~~~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~ 56 (329)
........++.+|+..|.+-.+|++-+ ..+...+...+.-|+.-|+
T Consensus 14 ~~~~~~~~IL~lL~~~g~sa~eLAk~L-------giSk~aVr~~L~~Le~eG~ 59 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEGATAAQLTRQL-------NMEKREVNKALYDLQRSAM 59 (82)
T ss_dssp CSHHHHHHHHHHHSSSTEEHHHHHHHS-------SSCHHHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCC
Confidence 334455677778887776655555333 4555677777777777666
No 99
>3h0g_D DNA-directed RNA polymerase II subunit RPB4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.48 E-value=17 Score=27.74 Aligned_cols=27 Identities=7% Similarity=-0.010 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHhCCCCCCChhHHHhhCC
Q 020213 42 DRAADNWAYLKSIGILERKLPNVVSKCP 69 (329)
Q Consensus 42 ~~l~~~~~~L~~~G~~~~~i~~i~~~~P 69 (329)
+.+....+.|.. |+.+-+++.+..-+|
T Consensus 72 e~~~~v~~lL~~-~L~~fEia~L~NL~P 98 (135)
T 3h0g_D 72 EATYACERILGN-RFHKFERAQLGTLCC 98 (135)
T ss_dssp HHHHHHHHHCCC-CSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh-cCCHHHHHHHccCCC
Confidence 333333333333 454444444444444
No 100
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=20.10 E-value=3.1e+02 Score=23.00 Aligned_cols=24 Identities=17% Similarity=0.121 Sum_probs=15.6
Q ss_pred HHHHHcCC-CCChhhhhcccHHHHH
Q 020213 299 RLLKQRNI-YCSLSEMLDCNAKKFL 322 (329)
Q Consensus 299 ~~l~~~gl-~~~l~~~l~~s~~~F~ 322 (329)
++++..|+ +.++..+++.+-+++.
T Consensus 99 ~~l~~~gv~DFtl~DL~kP~~~Rt~ 123 (250)
T 2ve7_C 99 SFLPICRVNDFETADILCPKAKRTS 123 (250)
T ss_dssp HHHHHTTCCCCCHHHHHSCCHHHHH
T ss_pred HHHHHcCCCCCcHhHhcCCchHHHH
Confidence 46666776 5677777777666543
Done!