Query 020213
Match_columns 329
No_of_seqs 142 out of 1391
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 13:31:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020213.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020213hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 74.0 1.1 7.9E-05 25.4 2.4 25 225-249 4-28 (41)
2 d1oqya1 a.5.2.1 (A:160-200) DN 68.3 1.7 0.00012 24.5 2.4 26 8-33 3-28 (41)
3 d2g3qa1 a.5.2.1 (A:1339-1381) 67.5 1.6 0.00012 24.5 2.1 23 229-251 8-30 (43)
4 d1rw1a_ c.47.1.12 (A:) Hypothe 64.3 4.4 0.00032 28.1 4.7 43 199-246 71-113 (114)
5 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 61.0 7.8 0.00057 22.7 4.6 38 10-53 13-50 (51)
6 d2crna1 a.5.2.1 (A:8-58) Suppr 56.2 8.9 0.00065 22.4 4.2 41 8-55 2-42 (51)
7 d1qpza1 a.35.1.5 (A:2-58) Puri 53.7 10 0.00073 22.8 4.3 46 125-175 9-54 (57)
8 d1wiva_ a.5.2.1 (A:) Ubiquitin 53.6 12 0.00091 23.5 5.0 39 9-54 29-67 (73)
9 d1qpza1 a.35.1.5 (A:2-58) Puri 53.5 13 0.00096 22.2 4.8 50 14-66 5-54 (57)
10 d1wjia_ a.5.2.1 (A:) Tudor dom 52.4 14 0.001 22.5 5.0 38 10-54 10-47 (63)
11 d1vg5a_ a.5.2.1 (A:) Rhomboid 50.5 14 0.001 23.2 4.9 38 10-54 30-67 (73)
12 d2daha1 a.5.2.1 (A:8-48) Ubiqu 48.2 6.5 0.00047 22.0 2.5 37 226-269 3-39 (41)
13 d1whca_ a.5.2.1 (A:) UBA/UBX 3 46.9 15 0.0011 22.5 4.4 39 10-54 10-48 (64)
14 d2hsga1 a.35.1.5 (A:2-58) Gluc 46.4 22 0.0016 21.1 5.0 50 13-65 5-54 (57)
15 d1efaa1 a.35.1.5 (A:2-60) Lac 45.0 23 0.0017 21.2 5.0 52 12-66 5-56 (59)
16 d1wgna_ a.5.2.1 (A:) Ubiquitin 44.3 11 0.00077 23.2 3.3 38 10-54 20-57 (63)
17 d1wiva_ a.5.2.1 (A:) Ubiquitin 44.2 8.6 0.00063 24.4 3.0 37 226-270 30-66 (73)
18 d1vg5a_ a.5.2.1 (A:) Rhomboid 43.0 14 0.00099 23.4 3.8 36 81-124 30-65 (73)
19 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 41.2 29 0.0021 20.0 4.9 44 149-200 5-49 (50)
20 d1uxda_ a.35.1.5 (A:) Fructose 37.8 22 0.0016 21.2 4.1 49 14-62 5-53 (59)
21 d1cuka1 a.5.1.1 (A:156-203) DN 36.6 7.6 0.00055 22.4 1.6 26 8-33 4-29 (48)
22 d1oqya2 a.5.2.1 (A:317-360) DN 33.1 12 0.00086 21.1 1.9 24 226-249 5-28 (44)
23 d1k6ya1 a.4.10.1 (A:1-46) N-te 33.1 17 0.0012 20.7 2.7 25 228-252 18-43 (46)
24 d2r1jl1 a.35.1.2 (L:3-68) P22 31.1 24 0.0018 21.1 3.6 29 225-253 4-33 (66)
25 d1g8ma1 c.24.1.3 (A:4-200) IMP 30.6 13 0.00093 28.5 2.5 36 192-229 35-70 (197)
26 d2pfxa1 a.152.1.3 (A:1-190) Un 30.4 46 0.0034 24.6 5.9 86 41-137 19-110 (190)
27 d1z96a1 a.5.2.1 (A:295-332) UB 29.2 24 0.0017 18.1 2.6 23 226-248 3-25 (38)
28 d2es9a1 a.247.1.1 (A:11-107) H 29.1 18 0.0013 23.1 2.6 85 189-290 3-89 (97)
29 d2bwba1 a.5.2.1 (A:328-371) DS 27.9 14 0.001 20.9 1.6 18 224-241 4-21 (44)
30 d1rxwa1 a.60.7.1 (A:220-324) F 27.8 78 0.0057 20.9 6.5 22 80-101 78-100 (105)
31 d1q08a_ a.6.1.3 (A:) Transcrip 27.5 20 0.0015 23.6 2.8 20 228-247 5-27 (94)
32 d1biaa1 a.4.5.1 (A:1-63) Bioti 27.4 33 0.0024 20.5 3.7 48 3-57 1-49 (63)
33 d1rw1a_ c.47.1.12 (A:) Hypothe 27.0 19 0.0014 24.6 2.7 23 235-257 71-93 (114)
34 d1zcza1 c.24.1.3 (A:1-157) IMP 26.9 7.9 0.00058 28.6 0.6 37 227-265 33-69 (157)
35 d1ttea1 a.5.2.1 (A:161-215) Ub 25.8 29 0.0021 20.4 2.9 21 228-248 12-32 (55)
36 d1sfxa_ a.4.5.50 (A:) Hypothet 25.5 42 0.0031 22.3 4.4 48 9-56 6-63 (109)
37 d2croa_ a.35.1.2 (A:) cro 434 25.4 60 0.0044 19.1 4.8 29 225-253 4-33 (65)
38 d1icha_ a.77.1.2 (A:) Tumor ne 25.4 50 0.0036 20.9 4.6 40 10-52 14-53 (87)
39 d1z3ea1 c.47.1.12 (A:1-114) Re 25.1 43 0.0032 22.5 4.4 22 236-257 73-94 (114)
40 d1b0na2 a.35.1.3 (A:1-68) SinR 24.7 47 0.0034 19.8 4.1 56 226-282 3-64 (68)
41 d1e0ea_ a.4.10.1 (A:) N-termin 24.7 29 0.0021 19.6 2.7 25 228-252 18-43 (46)
42 d1y14a_ a.60.8.2 (A:) RNA poly 24.7 13 0.00098 27.8 1.5 51 20-70 90-141 (176)
43 d1veka_ a.5.2.1 (A:) Ubiquitin 24.2 47 0.0034 21.3 4.1 40 10-55 30-69 (84)
44 d1go3f_ a.60.8.2 (F:) RNA poly 24.2 7.1 0.00051 26.9 -0.2 59 5-68 48-106 (107)
45 d2c35a1 a.60.8.2 (A:14-142) RN 23.0 9.9 0.00072 26.9 0.5 31 40-70 63-93 (129)
46 d1g8ma1 c.24.1.3 (A:4-200) IMP 22.8 21 0.0015 27.2 2.4 61 40-121 11-71 (197)
47 d2cosa1 a.5.2.1 (A:8-48) Serin 22.7 54 0.004 17.3 3.7 36 155-198 5-40 (41)
48 d1utxa_ a.35.1.3 (A:) Putative 22.6 33 0.0024 20.5 3.0 54 227-280 4-61 (66)
49 d1veja1 a.5.2.1 (A:8-68) 49314 22.4 34 0.0025 20.6 2.9 21 222-242 19-39 (61)
50 d2gf5a1 a.77.1.2 (A:89-191) FA 21.5 1E+02 0.0073 19.9 6.2 17 53-69 30-46 (103)
51 d2b5aa1 a.35.1.3 (A:1-77) Regu 20.1 47 0.0034 20.3 3.5 29 225-253 11-40 (77)
52 d1y9qa1 a.35.1.8 (A:4-82) Prob 20.0 51 0.0037 20.3 3.7 29 225-253 9-38 (79)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.04 E-value=1.1 Score=25.37 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=20.1
Q ss_pred cchhHHHHHHhCCChhHHHHHHHhC
Q 020213 225 LSPNFTFLKRCGFADGQIAALVAAY 249 (329)
Q Consensus 225 l~~k~~~L~~~G~s~~~v~~l~~~~ 249 (329)
.++.+.-|.+|||+.+++.+.+.++
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 4 YETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4677888889999998888777665
No 2
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.28 E-value=1.7 Score=24.52 Aligned_cols=26 Identities=4% Similarity=0.172 Sum_probs=19.1
Q ss_pred CcchHHHHHHhCCCChhHHHHHHHhh
Q 020213 8 NGNSVIWFLKDRGFNDRTIHDMFKRC 33 (329)
Q Consensus 8 ~~~~v~~~L~~~G~s~~~i~~i~~~~ 33 (329)
+-++.++-|.++||++.++.+.+...
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34566777788888888888777755
No 3
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=67.47 E-value=1.6 Score=24.55 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=17.9
Q ss_pred HHHHHHhCCChhHHHHHHHhCch
Q 020213 229 FTFLKRCGFADGQIAALVAAYPP 251 (329)
Q Consensus 229 ~~~L~~~G~s~~~v~~l~~~~P~ 251 (329)
++-|.+|||+.++..+.+.++-.
T Consensus 8 i~eL~~MGF~e~~A~~AL~k~~w 30 (43)
T d2g3qa1 8 VEELSGMGFTEEEAHNALEKCNW 30 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHTS
T ss_pred HHHHHhcCCCHHHHHHHHHHcCC
Confidence 46677899999988888877653
No 4
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=64.28 E-value=4.4 Score=28.09 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=29.3
Q ss_pred hCCChhhHHHHHhhcCceeeeccccccchhHHHHHHhCCChhHHHHHH
Q 020213 199 VGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFADGQIAALV 246 (329)
Q Consensus 199 ~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~~~G~s~~~v~~l~ 246 (329)
-.++.+++..++..+|.++-+.+-. ...++ ..|++.+++..++
T Consensus 71 ~~ls~~e~i~~i~~~P~LikRPIv~-~~~~~----~iG~~~e~~~~~l 113 (114)
T d1rw1a_ 71 ADLDEAKAIELMLAQPSMIKRPVLE-LGGRT----LVGFKPDAYAAAL 113 (114)
T ss_dssp TTCCHHHHHHHHHHCGGGBCSCEEE-CSSCE----EESCCHHHHHHHH
T ss_pred ccccHHHHHHHHHhCcceEeCCEEE-ECCEE----EECCCHHHHHHHh
Confidence 4577888888888999888776532 12221 4688888877654
No 5
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.02 E-value=7.8 Score=22.72 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=27.6
Q ss_pred chHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHh
Q 020213 10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKS 53 (329)
Q Consensus 10 ~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~ 53 (329)
+..++-|.++||+...+.+.+...- -.+++..++||-+
T Consensus 13 ~~~l~~L~~MGF~~~~a~~AL~~t~------n~~ve~A~~WLl~ 50 (51)
T d2cpwa1 13 GSALDVLLSMGFPRARAQKALASTG------GRSVQTACDWLFS 50 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHTT------TSCHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHC------CCCHHHHHHHHHc
Confidence 4456777899999999998887431 1357778888765
No 6
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.17 E-value=8.9 Score=22.42 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=29.6
Q ss_pred CcchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCC
Q 020213 8 NGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIG 55 (329)
Q Consensus 8 ~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G 55 (329)
||.. ++-|.++||+...+.+.+...- -.+++..++||.++.
T Consensus 2 ~p~~-v~~L~~MGF~~~~a~~Al~~t~------n~~ve~A~~Wl~~h~ 42 (51)
T d2crna1 2 SPSL-LEPLLAMGFPVHTALKALAATG------RKTAEEALAWLHDHC 42 (51)
T ss_dssp SCSS-HHHHHHTSCCHHHHHHHHHHHT------SCCHHHHHHHHHHHS
T ss_pred CHHH-HHHHHHcCCCHHHHHHHHHHHC------CCCHHHHHHHHHHcC
Confidence 4444 5556799999999998876431 136788899998763
No 7
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=53.67 E-value=10 Score=22.77 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=26.5
Q ss_pred HCCCCchhhhhhHhhCCceeccCcchhHhHHHHHHhhcCCCchhhHHHHHH
Q 020213 125 ALGVPEKQLGRMILLNPRLISYSIESKLTETVDFLTSLGLAREGMIGKVLV 175 (329)
Q Consensus 125 ~lG~~~~~l~~~l~~~P~il~~~~~~~l~~~~~~l~~~G~~~~~~i~~ll~ 175 (329)
..|+|...+.+++...|.+ + +++-+.+.+...++|+.|+ ..++-++
T Consensus 9 ~agVS~sTVSr~ln~~~~v---s-~~tr~rV~~~a~~lgY~pn-~~Ar~Lr 54 (57)
T d1qpza1 9 RANVSTTTVSHVINKTRFV---A-EETRNAVWAAIKELHYSPS-AVARSLK 54 (57)
T ss_dssp HHTSCHHHHHHHHHTCSCC---C-HHHHHHHHHHHHHHTCCCC-HHHHHHH
T ss_pred HHCcCHHHHHHHHCCCCcc---C-HHHHHHHHHHHHHHCCCCC-HHHHHHh
Confidence 4677777777777666643 2 2344555555566777663 5554444
No 8
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=53.57 E-value=12 Score=23.55 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=30.6
Q ss_pred cchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhC
Q 020213 9 GNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSI 54 (329)
Q Consensus 9 ~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~ 54 (329)
....++-|.++||+..++.+.+.... .+++..++||.+.
T Consensus 29 d~~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 29 DQSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNN 67 (73)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHS
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHcC-------CCHHHHHHHHHcC
Confidence 34567778899999999988887652 4688888998875
No 9
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=53.48 E-value=13 Score=22.18 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=35.1
Q ss_pred HHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhHHHh
Q 020213 14 WFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVS 66 (329)
Q Consensus 14 ~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~i~~ 66 (329)
+.-+..|+|.+.+.+++...|. .+++.-+...+....+|+.+..+.+-+.
T Consensus 5 dvA~~agVS~sTVSr~ln~~~~---vs~~tr~rV~~~a~~lgY~pn~~Ar~Lr 54 (57)
T d1qpza1 5 DVAKRANVSTTTVSHVINKTRF---VAEETRNAVWAAIKELHYSPSAVARSLK 54 (57)
T ss_dssp HHHHHHTSCHHHHHHHHHTCSC---CCHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCc---cCHHHHHHHHHHHHHHCCCCCHHHHHHh
Confidence 4445678888888888887663 4556666666777788888777666553
No 10
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.43 E-value=14 Score=22.48 Aligned_cols=38 Identities=8% Similarity=0.150 Sum_probs=31.3
Q ss_pred chHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhC
Q 020213 10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSI 54 (329)
Q Consensus 10 ~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~ 54 (329)
...++-|.++||++.++.+.+.... .+++..++||.+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~-------~~~e~A~~wL~~~ 47 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 5667888999999999998887652 4789999999885
No 11
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=50.49 E-value=14 Score=23.23 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=30.4
Q ss_pred chHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhC
Q 020213 10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSI 54 (329)
Q Consensus 10 ~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~ 54 (329)
+.-++-|.++||+++++.+.+.... .+++..++||.+.
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~~~Ll~~ 67 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC-------CCHHHHHHHHHhC
Confidence 4567789999999999988887652 5788889998776
No 12
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.16 E-value=6.5 Score=21.95 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=23.3
Q ss_pred chhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHH
Q 020213 226 SPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLV 269 (329)
Q Consensus 226 ~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~ 269 (329)
++.++-|++|||+.++ ++=..|..+ ...+..-+++|.
T Consensus 3 ~~QL~~L~~MGF~d~~------~Ni~AL~~t-~Gdv~~Aie~Ll 39 (41)
T d2daha1 3 QVQLEQLRSMGFLNRE------ANLQALIAT-GGDVDAAVEKLR 39 (41)
T ss_dssp HHHHHHHHHHTCCCHH------HHHHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHH------HHHHHHHHc-CCCHHHHHHHHH
Confidence 5567888899998776 333444444 355666666554
No 13
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.93 E-value=15 Score=22.49 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=30.5
Q ss_pred chHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhC
Q 020213 10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSI 54 (329)
Q Consensus 10 ~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~ 54 (329)
.++++-|.++||+..++.+.+...- -.+++..++||.++
T Consensus 10 ~~~l~~L~~MGF~~~~a~~AL~~t~------n~~~e~A~~Wl~~h 48 (64)
T d1whca_ 10 LTALESLIEMGFPRGRAEKALALTG------NQGIEAAMDWLMEH 48 (64)
T ss_dssp CCHHHHHHTTTCCHHHHHHHHHHHT------SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC------CCCHHHHHHHHHHC
Confidence 4677788899999999998887541 12578899999886
No 14
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=46.35 E-value=22 Score=21.14 Aligned_cols=50 Identities=6% Similarity=0.067 Sum_probs=35.1
Q ss_pred HHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhHHH
Q 020213 13 IWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVV 65 (329)
Q Consensus 13 ~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~i~ 65 (329)
.+.-...|+|.+.+.+++...|. .+++.-+...+....+|..+....+-+
T Consensus 5 ~dvA~~agvS~~TVSr~Ln~~~~---Vs~~tr~rV~~aa~~lgY~pn~~A~~L 54 (57)
T d2hsga1 5 YDVAREASVSMATVSRVVNGNPN---VKPSTRKKVLETIERLGYRPNAVARGL 54 (57)
T ss_dssp HHHHHHTTSCHHHHHHHHTTCTT---SCHHHHHHHHHHHHHHTCCSCHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHhCCCCc---CCHHHHHHHHHHHHHHCcCCCHHHHHh
Confidence 34556688888888888887764 455666666677777888777655544
No 15
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=44.97 E-value=23 Score=21.16 Aligned_cols=52 Identities=8% Similarity=0.136 Sum_probs=36.6
Q ss_pred HHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhHHHh
Q 020213 12 VIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVS 66 (329)
Q Consensus 12 v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~i~~ 66 (329)
+.+.-...|+|.+.+.+++...+. .+++.-....+....+|+.+..+.+-+.
T Consensus 5 i~diA~~agvS~sTVSr~l~~~~~---vs~~tr~rI~~~a~~lgY~pn~~Ar~L~ 56 (59)
T d1efaa1 5 LYDVAEYAGVSYQTVSRVVNQASH---VSAKTREKVEAAMAELNYIPNRVAQQLA 56 (59)
T ss_dssp HHHHHHTTTSCHHHHHHHHTTCSS---CCTHHHHHHHHHHHHHTCCCCHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCc---CCHHHHHHHHHHHHHHCCCcCHHHHHHh
Confidence 345556688888888888876663 4556666666777788888777666553
No 16
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.29 E-value=11 Score=23.17 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=29.7
Q ss_pred chHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhC
Q 020213 10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSI 54 (329)
Q Consensus 10 ~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~ 54 (329)
...+.-|.++||++.++.+.+...- .+++..++||.+.
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhC
Confidence 4567888899999999988887652 4678888888775
No 17
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=44.16 E-value=8.6 Score=24.36 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=28.1
Q ss_pred chhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHHHHHHH
Q 020213 226 SPNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRIKFLVE 270 (329)
Q Consensus 226 ~~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~~fL~~ 270 (329)
...+.-|.+|||+.+++.+.+..+- .++..-++||..
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~Av~~Lls 66 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKASG--------GDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT--------SCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHcC--------CCHHHHHHHHHc
Confidence 5678889999999999988877662 356666777765
No 18
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=43.03 E-value=14 Score=23.36 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=24.5
Q ss_pred HHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHHHHHHH
Q 020213 81 VPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPLLAFFQ 124 (329)
Q Consensus 81 ~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~v~~L~ 124 (329)
++.++-|.++||+.+...+.+..+ . +++...++||-
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~----~----~n~e~A~~~Ll 65 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAA----D----DDLTVAVEILM 65 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH----T----SCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh----C----CCHHHHHHHHH
Confidence 567777888888888777777664 1 24555667764
No 19
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.16 E-value=29 Score=20.00 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=23.8
Q ss_pred chhHhHHHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHH-hC
Q 020213 149 ESKLTETVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS-VG 200 (329)
Q Consensus 149 ~~~l~~~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~-~g 200 (329)
+..+.+-++-|+++||...+.-.+++... ...+...++.|.+ .|
T Consensus 5 e~ry~~QL~qL~~MGF~d~~~Ni~AL~~t--------~GdV~~Aie~Ll~~~g 49 (50)
T d2dnaa1 5 EVRFSKEMECLQAMGFVNYNANLQALIAT--------DGDTNAAIYKLKSSQG 49 (50)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHT--------TSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHc--------CCCHHHHHHHHHhcCC
Confidence 44566777777788876322222333321 1356666666665 44
No 20
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=37.85 E-value=22 Score=21.20 Aligned_cols=49 Identities=8% Similarity=0.016 Sum_probs=33.4
Q ss_pred HHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChh
Q 020213 14 WFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLP 62 (329)
Q Consensus 14 ~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~ 62 (329)
++-+..|+|.+.+.+++...|.-...+++.-+...+....+|..+....
T Consensus 5 diA~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~~A 53 (59)
T d1uxda_ 5 EIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVA 53 (59)
T ss_dssp HHHHHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCCCSCC
T ss_pred HHHHHHCcCHHHHHHHHcCCCCcCcCCHHHHHHHHHHHHHHCCCcCHHH
Confidence 4445678888888888887765333455666666677777788766543
No 21
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.61 E-value=7.6 Score=22.44 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=17.2
Q ss_pred CcchHHHHHHhCCCChhHHHHHHHhh
Q 020213 8 NGNSVIWFLKDRGFNDRTIHDMFKRC 33 (329)
Q Consensus 8 ~~~~v~~~L~~~G~s~~~i~~i~~~~ 33 (329)
+.+..+.-|..+|+++.++.+++.+.
T Consensus 4 ~~~eAi~AL~~LGY~~~ea~~av~~i 29 (48)
T d1cuka1 4 AEQEAVARLVALGYKPQEASRMVSKI 29 (48)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34455666777777777777777654
No 22
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.14 E-value=12 Score=21.09 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=17.4
Q ss_pred chhHHHHHHhCCChhHHHHHHHhC
Q 020213 226 SPNFTFLKRCGFADGQIAALVAAY 249 (329)
Q Consensus 226 ~~k~~~L~~~G~s~~~v~~l~~~~ 249 (329)
+.-++-|..+||+...+.+....|
T Consensus 5 ~~aIeRL~~LGF~r~~viqay~AC 28 (44)
T d1oqya2 5 KEAIERLKALGFPESLVIQAYFAC 28 (44)
T ss_dssp HHHHHHHHHHTCCSHHHHHHTSSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 445778888999988887765443
No 23
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=33.06 E-value=17 Score=20.67 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=15.9
Q ss_pred hHHHHH-HhCCChhHHHHHHHhCchh
Q 020213 228 NFTFLK-RCGFADGQIAALVAAYPPI 252 (329)
Q Consensus 228 k~~~L~-~~G~s~~~v~~l~~~~P~i 252 (329)
+...|. .+|++.....+++..||..
T Consensus 18 n~~~L~~~F~ip~~vAr~IV~~C~~C 43 (46)
T d1k6ya1 18 NWRAMASDFNLPPVVAKEIVASCDKC 43 (46)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHCTTC
T ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 344555 6677777777777776653
No 24
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=31.07 E-value=24 Score=21.06 Aligned_cols=29 Identities=3% Similarity=0.126 Sum_probs=18.0
Q ss_pred cchhHHHHH-HhCCChhHHHHHHHhCchhh
Q 020213 225 LSPNFTFLK-RCGFADGQIAALVAAYPPIL 253 (329)
Q Consensus 225 l~~k~~~L~-~~G~s~~~v~~l~~~~P~iL 253 (329)
+..++..++ ..|++.+++++.+.-.+..+
T Consensus 4 ig~rik~~R~~~g~tq~~lA~~~gvs~~~i 33 (66)
T d2r1jl1 4 MGERIRARRKKLKIRQAALGKMVGVSNVAI 33 (66)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHH
Confidence 455565555 66777777776665555554
No 25
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=30.61 E-value=13 Score=28.49 Aligned_cols=36 Identities=33% Similarity=0.503 Sum_probs=16.5
Q ss_pred HHHHHHHhCCChhhHHHHHhhcCceeeeccccccchhH
Q 020213 192 TSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNF 229 (329)
Q Consensus 192 ~~~~l~~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~ 229 (329)
..++|++.|+...+|-++ ..+|.++.-... +|-+++
T Consensus 35 Tak~L~~~gi~v~~Vs~~-tg~peil~GRVK-TLhPkI 70 (197)
T d1g8ma1 35 TATALRDAGLPVRDVSDL-TGFPEMLGGRVK-TLHPAV 70 (197)
T ss_dssp HHHHHHHTTCCCEEHHHH-HSCCCBGGGTBS-SCSHHH
T ss_pred HHHHHHHhcccHHHHHhh-hcCHHHHHHHHh-hcccee
Confidence 344455555555555443 345555544332 244444
No 26
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=30.41 E-value=46 Score=24.62 Aligned_cols=86 Identities=9% Similarity=0.009 Sum_probs=42.1
Q ss_pred chhhHHHHHHHH-hCCCCCCChhHHHhhCCCccccccccchHHHHHHH----H-HCCCChhhHHHHHHhCCCcccccchh
Q 020213 41 KDRAADNWAYLK-SIGILERKLPNVVSKCPKILTLGLNEKLVPMVECL----A-TLGTKPYEVASAITRFPPILSHSVEE 114 (329)
Q Consensus 41 ~~~l~~~~~~L~-~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~L----~-~lG~~~~~~~~~l~~~P~ll~~~~e~ 114 (329)
++++++.++.++ .+|+-+ .+-+.+..+|.++. ....++ . .-.++......+..+...+-+|..
T Consensus 19 p~~~~~~~~~~~~~~G~vp-N~~~~la~~P~~l~--------a~~~~~~~~~~~~~~L~~~~rEli~l~vS~~n~C~Y-- 87 (190)
T d2pfxa1 19 PDETQKYFEICQEKLGMVP-NVLKAYAFNVEKLN--------AFTAMYNDLMLGESQLSKLEREMIAVVVSSINKCFY-- 87 (190)
T ss_dssp CHHHHHHHHHHHHHHSSCC-HHHHHHTTSHHHHH--------HHHHHHHHHHHSSCSSCHHHHHHHHHHHHHHHTCHH--
T ss_pred CHHHHHHHHHHHHHhCCCc-HHHHHHHcCHHHHH--------HHHHHHHHHHhccccccHHHHHHHHHHHHHHhCCcH--
Confidence 345666666654 347754 44555555555443 222222 2 223555444444333333333433
Q ss_pred hHhHHHHHHHHCCCCchhhhhhH
Q 020213 115 KLCPLLAFFQALGVPEKQLGRMI 137 (329)
Q Consensus 115 ~l~~~v~~L~~lG~~~~~l~~~l 137 (329)
.+..+...++..|.+.+++..+.
T Consensus 88 C~~~H~~~~~~~g~~~~~~~~i~ 110 (190)
T d2pfxa1 88 CLVAHGAAVRQLSGDPQLGEMLV 110 (190)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChhhhhhHH
Confidence 23344556667777777666554
No 27
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=29.21 E-value=24 Score=18.14 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=16.1
Q ss_pred chhHHHHHHhCCChhHHHHHHHh
Q 020213 226 SPNFTFLKRCGFADGQIAALVAA 248 (329)
Q Consensus 226 ~~k~~~L~~~G~s~~~v~~l~~~ 248 (329)
..|+.-|.++||++-+..+.+..
T Consensus 3 nskiaqlvsmgfdpleaaqalda 25 (38)
T d1z96a1 3 NSKIAQLVSMGFDPLEAAQALDA 25 (38)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHhh
Confidence 45777778888887777665543
No 28
>d2es9a1 a.247.1.1 (A:11-107) Hypothetical protein YoaC {Salmonella typhimurium [TaxId: 90371]}
Probab=29.12 E-value=18 Score=23.06 Aligned_cols=85 Identities=9% Similarity=0.127 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhCCChhhHHHHHhhcCceeeeccccccchhHHHHHHhCCC--hhHHHHHHHhCchhhcccccchhhhHHH
Q 020213 189 LRPTSEFLKSVGLKELDLQVVAVKFPEVLCRDVNKILSPNFTFLKRCGFA--DGQIAALVAAYPPILIKSIKNSLEPRIK 266 (329)
Q Consensus 189 l~~~~~~l~~~g~~~~~i~~~i~~~P~il~~s~~~~l~~k~~~L~~~G~s--~~~v~~l~~~~P~iL~~s~~~~i~~k~~ 266 (329)
|...++|...|..+... |.-+.- ++-+.-+.||+++|++ .++|. ..-.==+.+ + -.-.|+.
T Consensus 3 IdKALDFIg~M~~Sas~--------P~sM~E---STAKGifKyLkelGVPas~~dv~----aRg~qegWn-~-gFT~K~~ 65 (97)
T d2es9a1 3 IEKALDFIGGMNTSASV--------PHSMDE---STAKGILKYLHDLGVPVSPEVVV----ARGEQEGWN-P-EFTKKVA 65 (97)
T ss_dssp HHHHHHHHHTSCTTCSS--------CCHHHH---HHHHHHHHHHHHTTCCCCHHHHH----HHHHHTTCC-H-HHHHHHH
T ss_pred hHHHHHHhcccccCCCC--------CCccch---HHHHHHHHHHHHcCCCCCHHHHH----HhcccccCC-h-hHHHHHH
Confidence 34455555555554333 332222 2345566777777775 33332 111112233 1 2333444
Q ss_pred HHHHHhCCChhhhhcCCceeecCc
Q 020213 267 FLVEVMGRQIDEVADYPDFFRHGL 290 (329)
Q Consensus 267 fL~~~~g~~~~~i~~~P~~l~~sl 290 (329)
=..++|.-...-+.++|.|++.-+
T Consensus 66 gWA~k~~sGerivIKnPEyFstYM 89 (97)
T d2es9a1 66 GWAEKVASGNRILIKNPEYFSTYM 89 (97)
T ss_dssp HHHHHHHTTCCCCCSSGGGSCHHH
T ss_pred HHHHHhccCCeeeecChHHHHHHH
Confidence 444444322333567888776544
No 29
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.88 E-value=14 Score=20.86 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=12.9
Q ss_pred ccchhHHHHHHhCCChhH
Q 020213 224 ILSPNFTFLKRCGFADGQ 241 (329)
Q Consensus 224 ~l~~k~~~L~~~G~s~~~ 241 (329)
..++-++-|++|||..++
T Consensus 4 ry~~QL~qL~~MGF~d~~ 21 (44)
T d2bwba1 4 RYEHQLRQLNDMGFFDFD 21 (44)
T ss_dssp HTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHcCCCcHH
Confidence 356667778888887665
No 30
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=27.80 E-value=78 Score=20.87 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=10.5
Q ss_pred hHHHHHHH-HHCCCChhhHHHHH
Q 020213 80 LVPMVECL-ATLGTKPYEVASAI 101 (329)
Q Consensus 80 l~~~l~~L-~~lG~~~~~~~~~l 101 (329)
.....+|| +.+|++.+.+.+.+
T Consensus 78 ~~~l~~fL~~e~~F~~~rv~~~l 100 (105)
T d1rxwa1 78 FEKAIEFLCEEHDFSRERVEKAL 100 (105)
T ss_dssp HHHHHHHHTTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 34444554 34555555444443
No 31
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=27.52 E-value=20 Score=23.57 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=16.4
Q ss_pred hHHHHH---HhCCChhHHHHHHH
Q 020213 228 NFTFLK---RCGFADGQIAALVA 247 (329)
Q Consensus 228 k~~~L~---~~G~s~~~v~~l~~ 247 (329)
++.|.. .+|||.+||..++.
T Consensus 5 RL~fI~~ar~lGFsL~EI~~ll~ 27 (94)
T d1q08a_ 5 RLKFIRHARQLGFSLESIRELLS 27 (94)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHH
Confidence 556654 89999999999986
No 32
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.39 E-value=33 Score=20.50 Aligned_cols=48 Identities=10% Similarity=0.209 Sum_probs=33.0
Q ss_pred ccccCCcchHHHHHHhCC-CChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCC
Q 020213 3 ISTSQNGNSVIWFLKDRG-FNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGIL 57 (329)
Q Consensus 3 ~~~~~~~~~v~~~L~~~G-~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~ 57 (329)
|+.++..-.++++|++-+ +|.+++++.+ ..+...+...++.|+..|+.
T Consensus 1 Mk~~~~~~~iL~~L~~~~~~s~~eLa~~l-------~vS~~ti~r~i~~L~~~G~~ 49 (63)
T d1biaa1 1 MKDNTVPLKLIALLANGEFHSGEQLGETL-------GMSRAAINKHIQTLRDWGVD 49 (63)
T ss_dssp CCCCHHHHHHHHHHTTSSCBCHHHHHHHH-------TSCHHHHHHHHHHHHHTTCC
T ss_pred CCccHHHHHHHHHHHHCCcCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCc
Confidence 455555667888887744 5777776555 34556777888888888874
No 33
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.00 E-value=19 Score=24.57 Aligned_cols=23 Identities=13% Similarity=0.405 Sum_probs=19.6
Q ss_pred hCCChhHHHHHHHhCchhhcccc
Q 020213 235 CGFADGQIAALVAAYPPILIKSI 257 (329)
Q Consensus 235 ~G~s~~~v~~l~~~~P~iL~~s~ 257 (329)
..++.+++.+++.++|.++.-.+
T Consensus 71 ~~ls~~e~i~~i~~~P~LikRPI 93 (114)
T d1rw1a_ 71 ADLDEAKAIELMLAQPSMIKRPV 93 (114)
T ss_dssp TTCCHHHHHHHHHHCGGGBCSCE
T ss_pred ccccHHHHHHHHHhCcceEeCCE
Confidence 46899999999999999986654
No 34
>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]}
Probab=26.89 E-value=7.9 Score=28.59 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=22.8
Q ss_pred hhHHHHHHhCCChhHHHHHHHhCchhhcccccchhhhHH
Q 020213 227 PNFTFLKRCGFADGQIAALVAAYPPILIKSIKNSLEPRI 265 (329)
Q Consensus 227 ~k~~~L~~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~ 265 (329)
...++|++.|++..+|.+ +..+|.+|.-.+ +++-|++
T Consensus 33 GTak~L~~~Gi~v~~Vs~-~Tg~peil~gRv-KTLhp~i 69 (157)
T d1zcza1 33 GTAKFLKSNGIEANDVST-ITGFENLLGGLV-KTLHPEI 69 (157)
T ss_dssp HHHHHHHHTTCCCEEGGG-GSCCCCGGGGTT-TTCCHHH
T ss_pred hHHHHHHHhhhhhhHHHH-HhhHHHHHHhhh-ccchHHH
Confidence 344666666666666554 346777776664 6776664
No 35
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.81 E-value=29 Score=20.36 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=13.1
Q ss_pred hHHHHHHhCCChhHHHHHHHh
Q 020213 228 NFTFLKRCGFADGQIAALVAA 248 (329)
Q Consensus 228 k~~~L~~~G~s~~~v~~l~~~ 248 (329)
-++-+..+||+.+.+..++++
T Consensus 12 ~V~~f~~mGF~rdKvI~VLrr 32 (55)
T d1ttea1 12 LIDEFESQGFEKDKIVEVLRR 32 (55)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCchhHHHHHHH
Confidence 345566677777766666654
No 36
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=25.46 E-value=42 Score=22.30 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=31.4
Q ss_pred cchHHHHHHhCCCChhHHHHHHH--hhhcc--------cCCcchhhHHHHHHHHhCCC
Q 020213 9 GNSVIWFLKDRGFNDRTIHDMFK--RCKRL--------QGVEKDRAADNWAYLKSIGI 56 (329)
Q Consensus 9 ~~~v~~~L~~~G~s~~~i~~i~~--~~p~l--------l~~~~~~l~~~~~~L~~~G~ 56 (329)
.+.+.+.|..+|+++.++.-+.. .+|.. +..+...+...++-|.+.|+
T Consensus 6 ~~~l~~~L~~lGlt~~e~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~l~~L~~~Gl 63 (109)
T d1sfxa_ 6 LGELVKALEKLSFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGF 63 (109)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCHHHHHHHhCCCcchHHHHHHHHHhCCC
Confidence 36788999999999999865433 22221 22333456777777777776
No 37
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=25.44 E-value=60 Score=19.06 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=15.4
Q ss_pred cchhHHHHH-HhCCChhHHHHHHHhCchhh
Q 020213 225 LSPNFTFLK-RCGFADGQIAALVAAYPPIL 253 (329)
Q Consensus 225 l~~k~~~L~-~~G~s~~~v~~l~~~~P~iL 253 (329)
+.+++..++ +.|++.+++++.+--.+.-+
T Consensus 4 i~~rlr~~R~~~gltq~~lA~~~gvs~~ti 33 (65)
T d2croa_ 4 LSERLKKRRIALKMTQTELATKAGVKQQSI 33 (65)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHhHH
Confidence 445555554 56666666665554444333
No 38
>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.37 E-value=50 Score=20.89 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=22.5
Q ss_pred chHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHH
Q 020213 10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLK 52 (329)
Q Consensus 10 ~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~ 52 (329)
.....+-+.+|++..+|..|-.++|. ...+...+.+..++
T Consensus 14 ~~Wk~lar~LGls~~~i~~I~~~~~~---~~~eq~~~mL~~W~ 53 (87)
T d1icha_ 14 LRWKEFVKRLGLSDHEIDRLELQNGR---CLREAQYSMLATWR 53 (87)
T ss_dssp TTHHHHHHHHTCCHHHHHHHHHHCCS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHCCC---CHHHHHHHHHHHHH
Confidence 34556666677777777777666652 11234444444443
No 39
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=25.11 E-value=43 Score=22.55 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=17.5
Q ss_pred CCChhHHHHHHHhCchhhcccc
Q 020213 236 GFADGQIAALVAAYPPILIKSI 257 (329)
Q Consensus 236 G~s~~~v~~l~~~~P~iL~~s~ 257 (329)
..+.+++.+++.++|.++.-.+
T Consensus 73 ~ls~~~~i~ll~~~P~LikRPI 94 (114)
T d1z3ea1 73 SMPLQDLYRLINEHPGLLRRPI 94 (114)
T ss_dssp GSBHHHHHHHHHHCGGGBCSCE
T ss_pred hhhhHHHHHHHHhChhheeCCE
Confidence 3467899999999999886554
No 40
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=24.75 E-value=47 Score=19.80 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=30.2
Q ss_pred chhHHHHH-HhCCChhHHHHHHHhCchhhcccccc--hhhhHH---HHHHHHhCCChhhhhcC
Q 020213 226 SPNFTFLK-RCGFADGQIAALVAAYPPILIKSIKN--SLEPRI---KFLVEVMGRQIDEVADY 282 (329)
Q Consensus 226 ~~k~~~L~-~~G~s~~~v~~l~~~~P~iL~~s~~~--~i~~k~---~fL~~~~g~~~~~i~~~ 282 (329)
.+++..++ ..|++.+++++.+.-.+..+..= ++ +-.|.+ .-+.+.+|++++++...
T Consensus 3 g~~ik~~R~~~gltq~~la~~~gis~~~i~~~-E~g~~~~ps~~~l~~ia~~l~v~~~~l~~~ 64 (68)
T d1b0na2 3 GQRIKQYRKEKGYSLSELAEKAGVAKSYLSSI-ERNLQTNPSIQFLEKVSAVLDVSVHTLLDE 64 (68)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHH-HTTCCSCCCHHHHHHHHHHHTCCHHHHHCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHH-HcCCCCCCCHHHHHHHHHHHCCcHHHHcCC
Confidence 44555555 67777777777765555554321 21 112333 33444567777766543
No 41
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=24.73 E-value=29 Score=19.62 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=17.1
Q ss_pred hHHHHH-HhCCChhHHHHHHHhCchh
Q 020213 228 NFTFLK-RCGFADGQIAALVAAYPPI 252 (329)
Q Consensus 228 k~~~L~-~~G~s~~~v~~l~~~~P~i 252 (329)
+...|. .+|++.....+++..||.+
T Consensus 18 N~~~L~~~F~lp~~vAr~IV~~C~~C 43 (46)
T d1e0ea_ 18 NVKELSHKFGIPNLVARQIVNSCAQC 43 (46)
T ss_dssp CHHHHHHHTCCCHHHHHHHHHHCHHH
T ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 445666 6777777777777777754
No 42
>d1y14a_ a.60.8.2 (A:) RNA polymerase II subunit RBP4 (RpoF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.65 E-value=13 Score=27.77 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=28.3
Q ss_pred CCChhHHHHHHHhhhcccCC-cchhhHHHHHHHHhCCCCCCChhHHHhhCCC
Q 020213 20 GFNDRTIHDMFKRCKRLQGV-EKDRAADNWAYLKSIGILERKLPNVVSKCPK 70 (329)
Q Consensus 20 G~s~~~i~~i~~~~p~ll~~-~~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~ 70 (329)
|-+...+.+.+.+.-.+-.. +++.+...-+.|.+.|+.+-+++.+..-+|.
T Consensus 90 g~~~~v~~kTldYl~~Fsk~k~~es~~~vrelL~~~~L~~fE~a~L~NLcPe 141 (176)
T d1y14a_ 90 GGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACD 141 (176)
T ss_dssp CSCCHHHHHHHHHHHHHCSCCSHHHHHHHHHHHHTTTCCHHHHHHHHHSCCS
T ss_pred CCchHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCHHHHHHhhccCCC
Confidence 44444555555444444333 4455666666666667766666666665553
No 43
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.19 E-value=47 Score=21.30 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=30.2
Q ss_pred chHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCC
Q 020213 10 NSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIG 55 (329)
Q Consensus 10 ~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G 55 (329)
.+.++-|.++||+...+.+.+...- -.+++..++||.++.
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~------n~~~e~A~~Wl~~h~ 69 (84)
T d1veka_ 30 EEIVAQLVSMGFSQLHCQKAAINTS------NAGVEEAMNWLLSHM 69 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT------TCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHc------CCCHHHHHHHHHHcC
Confidence 3577788899999999988765321 146888999998864
No 44
>d1go3f_ a.60.8.2 (F:) RNA polymerase II subunit RBP4 (RpoF) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=24.15 E-value=7.1 Score=26.86 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=0.0
Q ss_pred ccCCcchHHHHHHhCCCChhHHHHHHHhhhcccCCcchhhHHHHHHHHhCCCCCCChhHHHhhC
Q 020213 5 TSQNGNSVIWFLKDRGFNDRTIHDMFKRCKRLQGVEKDRAADNWAYLKSIGILERKLPNVVSKC 68 (329)
Q Consensus 5 ~~~~~~~v~~~L~~~G~s~~~i~~i~~~~p~ll~~~~~~l~~~~~~L~~~G~~~~~i~~i~~~~ 68 (329)
++.++.++++-|.++|+.+..+++|+.-.| .+++.++..+..... ..+.++|..++.++
T Consensus 48 ~~e~~~~l~~~L~~~~~~~~~aakIanL~P----~~~dElrai~~~~~~-~~~~eeIl~il~~y 106 (107)
T d1go3f_ 48 DKEEAKKLVEELISLGIDEKTAVKIADILP----EDLDDLRAIYYKREL-PENAEEILEIVRKY 106 (107)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHCC----CSHHHHHHHSTTSCC-CTTHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHhCC----CCHHHHHHHHHHhcc-CCCHHHHHHHHHHh
No 45
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.02 E-value=9.9 Score=26.94 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=21.2
Q ss_pred cchhhHHHHHHHHhCCCCCCChhHHHhhCCC
Q 020213 40 EKDRAADNWAYLKSIGILERKLPNVVSKCPK 70 (329)
Q Consensus 40 ~~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~ 70 (329)
+++.+....+.+...|+.+.++.+|+.-.|.
T Consensus 63 ~~es~~~~~~ll~~~~L~~~E~~~i~Nl~P~ 93 (129)
T d2c35a1 63 NRETIASVRSLLLQKKLHKFELACLANLCPE 93 (129)
T ss_dssp SHHHHHHHHHHHHTSSCCHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHhcccCCCHHHHHHHhCCCCC
Confidence 3455666666666677777777777777764
No 46
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=22.81 E-value=21 Score=27.17 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=41.5
Q ss_pred cchhhHHHHHHHHhCCCCCCChhHHHhhCCCccccccccchHHHHHHHHHCCCChhhHHHHHHhCCCcccccchhhHhHH
Q 020213 40 EKDRAADNWAYLKSIGILERKLPNVVSKCPKILTLGLNEKLVPMVECLATLGTKPYEVASAITRFPPILSHSVEEKLCPL 119 (329)
Q Consensus 40 ~~~~l~~~~~~L~~~G~~~~~i~~i~~~~P~lL~~~~~~~l~~~l~~L~~lG~~~~~~~~~l~~~P~ll~~~~e~~l~~~ 119 (329)
|...+.+-...|.+.|+ .+++. .-.-.+|++.|++-.++.+ ++.+|.++...+ ++|.|.
T Consensus 11 DK~~l~~la~~L~~~g~-------------~IisT------gGTak~L~~~gi~v~~Vs~-~tg~peil~GRV-KTLhPk 69 (197)
T d1g8ma1 11 EKAGLVEFARSLNALGL-------------GLIAS------GGTATALRDAGLPVRDVSD-LTGFPEMLGGRV-KTLHPA 69 (197)
T ss_dssp CCTTHHHHHHHHHHTTC-------------EEEEC------HHHHHHHHHTTCCCEEHHH-HHSCCCBGGGTB-SSCSHH
T ss_pred cccCHHHHHHHHHHCCC-------------EEEEC------cHHHHHHHHhcccHHHHHh-hhcCHHHHHHHH-hhccce
Confidence 44466777777777776 34443 2345677888888888877 468888888777 477776
Q ss_pred HH
Q 020213 120 LA 121 (329)
Q Consensus 120 v~ 121 (329)
+.
T Consensus 70 I~ 71 (197)
T d1g8ma1 70 VH 71 (197)
T ss_dssp HH
T ss_pred ee
Confidence 54
No 47
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.71 E-value=54 Score=17.33 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=22.1
Q ss_pred HHHHHhhcCCCchhhHHHHHHhcCcccccccccchhHHHHHHHH
Q 020213 155 TVDFLTSLGLAREGMIGKVLVKHPFIMGYSVDNRLRPTSEFLKS 198 (329)
Q Consensus 155 ~~~~l~~~G~~~~~~i~~ll~~~p~ll~~~~~~~l~~~~~~l~~ 198 (329)
.++-|...|++ ++.+.+.++... .+.|+..++|..+
T Consensus 5 Mlqdl~~aG~D-~~m~iral~qt~-------~rsieaaie~isk 40 (41)
T d2cosa1 5 MLQELVNAGCD-QEMAGRALKQTG-------SRSIEAALEYISK 40 (41)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHT-------SCCHHHHHHHHHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHHhC-------cccHHHHHHHHhc
Confidence 45566677887 456666666522 2467777777654
No 48
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=22.64 E-value=33 Score=20.50 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=28.5
Q ss_pred hhHHHHH-HhCCChhHHHHHHHhCchhhcccccchhhhHH---HHHHHHhCCChhhhh
Q 020213 227 PNFTFLK-RCGFADGQIAALVAAYPPILIKSIKNSLEPRI---KFLVEVMGRQIDEVA 280 (329)
Q Consensus 227 ~k~~~L~-~~G~s~~~v~~l~~~~P~iL~~s~~~~i~~k~---~fL~~~~g~~~~~i~ 280 (329)
.|+.-++ ..|+|..++++.+.-.+..++.=.-..-.|.+ .-+.+.+|++.+++.
T Consensus 4 ~ri~~lR~~~g~tq~elA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~lf 61 (66)
T d1utxa_ 4 NNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIF 61 (66)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHHE
T ss_pred HHHHHHHHHcCCCHHHHHHhcccCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHc
Confidence 3455555 77888888877766655555321011222333 333445667666654
No 49
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.44 E-value=34 Score=20.60 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=15.7
Q ss_pred ccccchhHHHHHHhCCChhHH
Q 020213 222 NKILSPNFTFLKRCGFADGQI 242 (329)
Q Consensus 222 ~~~l~~k~~~L~~~G~s~~~v 242 (329)
|...++-++-|++|||+..+.
T Consensus 19 e~ry~~QL~qL~eMGF~d~~~ 39 (61)
T d1veja1 19 EGRYQQELEELKALGFANRDA 39 (61)
T ss_dssp TTTSHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHH
Confidence 445677888888999976663
No 50
>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.52 E-value=1e+02 Score=19.94 Aligned_cols=17 Identities=12% Similarity=0.454 Sum_probs=8.6
Q ss_pred hCCCCCCChhHHHhhCC
Q 020213 53 SIGILERKLPNVVSKCP 69 (329)
Q Consensus 53 ~~G~~~~~i~~i~~~~P 69 (329)
.+|++..+|..|-..+|
T Consensus 30 ~Lgl~~~~I~~I~~~~~ 46 (103)
T d2gf5a1 30 QLKVSDTKIDSIEDRYP 46 (103)
T ss_dssp HTTCCHHHHHHHHHHSS
T ss_pred HcCCCHHHHHHHHHHcC
Confidence 34555555555544444
No 51
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=20.14 E-value=47 Score=20.34 Aligned_cols=29 Identities=10% Similarity=0.255 Sum_probs=16.5
Q ss_pred cchhHHHHH-HhCCChhHHHHHHHhCchhh
Q 020213 225 LSPNFTFLK-RCGFADGQIAALVAAYPPIL 253 (329)
Q Consensus 225 l~~k~~~L~-~~G~s~~~v~~l~~~~P~iL 253 (329)
+..++.-++ ..|+|.+++++.+.-.+..+
T Consensus 11 ~g~~ik~~R~~~gltq~~lA~~~gis~~~i 40 (77)
T d2b5aa1 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYI 40 (77)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHH
Confidence 444555554 56666666666655555444
No 52
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=20.04 E-value=51 Score=20.25 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=17.9
Q ss_pred cchhHHHHH-HhCCChhHHHHHHHhCchhh
Q 020213 225 LSPNFTFLK-RCGFADGQIAALVAAYPPIL 253 (329)
Q Consensus 225 l~~k~~~L~-~~G~s~~~v~~l~~~~P~iL 253 (329)
+..++..++ ..|+|.+++++.+.-.+..+
T Consensus 9 ig~~lr~~R~~~g~sq~~lA~~~gis~~~i 38 (79)
T d1y9qa1 9 IANQLKNLRKSRGLSLDATAQLTGVSKAML 38 (79)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcchhHH
Confidence 455555555 66777777776665555544
Done!