BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020215
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XM8|A Chain A, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|1XM8|B Chain B, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|2Q42|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
pdb|2Q42|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
Length = 254
Score = 419 bits (1078), Expect = e-118, Method: Compositional matrix adjust.
Identities = 191/254 (75%), Positives = 222/254 (87%)
Query: 76 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXX 135
+QIELVPCL+DNYAY+LHD DTGTVGVVDPSEA P+ID+L R RNLTYI
Sbjct: 1 MQIELVPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHT 60
Query: 136 XXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFY 195
ELK RYGAKVIGS +DKDRIPGID+ L DGDKWMFAGHEVHV+DTPGHT+GHIS Y
Sbjct: 61 GGNLELKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLY 120
Query: 196 FPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFAL 255
FPGS A+FTGDT+FSLSCGKLFEGTP QM +SLQKI SLPDDT++YCGHEYTLSNSKFAL
Sbjct: 121 FPGSRAIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLPDDTSIYCGHEYTLSNSKFAL 180
Query: 256 SIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADD 315
S+EPNNE LQSYAAH+A+LRSK +PTIPTT+KMEK+CNPFLR+S+ +IR++LRIP+ AD+
Sbjct: 181 SLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRIPEAADE 240
Query: 316 SEALGVIRQAKDNF 329
+EALG+IR+AKD+F
Sbjct: 241 AEALGIIRKAKDDF 254
>pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2
Glyoxalase Ii
Length = 258
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 132/257 (51%), Gaps = 7/257 (2%)
Query: 75 SLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXX 134
S+ + +P +DNY ++L + D G +VDP EA PV+ A++ I
Sbjct: 7 SMNLNSIPAFQDNYIWVLTN-DEGRCVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHHDH 65
Query: 135 XXXXXELKARY-GAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHIS 193
EL + V G +D+ G ++ DGD G + + TPGHT GH+
Sbjct: 66 VGGVKELLQHFPQMTVYGPAETQDK--GATHLVGDGDTIRVLGEKFTLFATPGHTLGHVC 123
Query: 194 FYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKF 253
++ +F GDTLFS CG+LFEGTP QM+ SL KI SLPDDT + C HEYTL+N KF
Sbjct: 124 YF--SRPYLFCGDTLFSGGCGRLFEGTPSQMYQSLMKINSLPDDTLICCAHEYTLANIKF 181
Query: 254 ALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTA 313
ALSI P++ + Y + +LR K T+P +K E+ N FLRT ++ +
Sbjct: 182 ALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETIL 241
Query: 314 DDSEA-LGVIRQAKDNF 329
EA +R KD F
Sbjct: 242 QQPEARFAWLRSKKDTF 258
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 133/261 (50%), Gaps = 13/261 (4%)
Query: 76 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXX 135
+++E++P L DNY YL+ D +T +VDP + V+DA + LT +
Sbjct: 1 MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHA 60
Query: 136 XXXXEL-KARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISF 194
+L K G KV G DRI + + V + TP HT GHI +
Sbjct: 61 GGNEKLVKLESGLKVYGG---DDRIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICY 117
Query: 195 YF--PGSA---AVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMS-LPDDTNVYCGHEYTL 248
+ PG + AVFTGDTLF CGK +EGT +M +L +++ LP DT VYCGHEYT+
Sbjct: 118 FVSKPGGSEPPAVFTGDTLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTI 177
Query: 249 SNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLR 308
+N KFA +EP N A++ A + S G PT+P+T+ E + NPF+R ++Q
Sbjct: 178 NNLKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAEEFTYNPFMRVREKTVQQHA- 236
Query: 309 IPDTADDSEALGVIRQAKDNF 329
D + +R+ KD F
Sbjct: 237 --GETDPVTTMRAVRREKDQF 255
>pdb|2P18|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
pdb|2P1E|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
With D- Lactate At The Active Site
Length = 311
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 124/280 (44%), Gaps = 35/280 (12%)
Query: 56 LASRSLRVAEFCSISNMSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVD-PSEAVPVIDA 114
L R + +C+ S+ + +VP L+DN++YL++D T T+ VD ++ P++
Sbjct: 10 LVPRGSHMRNYCT-KTFGSAFSVTVVPTLKDNFSYLINDHTTHTLAAVDVNADYKPILTY 68
Query: 115 LSRK-----NRNLTY----IXXXXXXXXXXXXXXELKARYGA-----KVIGSGVDKDRIP 160
+ N ++TY I +LKA A V+ G D IP
Sbjct: 69 IEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVVGGANDSIP 128
Query: 161 GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP------GSAAVFTGDTLFSLSCG 214
+ + +GD+ V VID P HTRGH+ + A+FTGDT+F G
Sbjct: 129 AVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQHPNDGVALFTGDTMFIAGIG 188
Query: 215 KLFEGTPGQMFSSLQKI--------MSLPDDTNVYCGHEYTLSNSKFALSIEPNNEA--- 263
FEG M +++K+ +L T ++ GHEYT F+ P+ +
Sbjct: 189 AFFEGDEKDMCRAMEKVYHIHKGNDYALDKVTFIFPGHEYTSGFMTFSEKTFPDRASDDL 248
Query: 264 --LQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSP 301
+Q+ A A G P++P+++ EK N FLR + P
Sbjct: 249 AFIQAQRAKYAAAVKTGDPSVPSSLAEEKRQNLFLRVADP 288
>pdb|2ZWR|A Chain A, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZWR|B Chain B, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZZI|A Chain A, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
pdb|2ZZI|B Chain B, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
Length = 207
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 181 VIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGK--LFEGTPGQMFSSLQKIMSLPDDT 238
V+ PGH+ GH++FY P A VF+GD LF S G+ L P +F+SL++++SLP +T
Sbjct: 119 VLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFASLKRLLSLPPET 178
Query: 239 NVYCGH 244
V+ GH
Sbjct: 179 RVHPGH 184
>pdb|2GCU|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
Length = 245
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 23/120 (19%)
Query: 149 VIGSGVDKDRIPGI------------DIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYF 196
V G+G+ K ++PG+ D+ L GDK + V TPGHT G ++ Y
Sbjct: 67 VTGTGLLKTKLPGVKSVISKASGSKADLFLEPGDKVSIGDIYLEVRATPGHTAGCVT-YV 125
Query: 197 PGSAA-------VFTGDTLFSLSCGK--LFEGTPGQMFSSLQ-KIMSLPDDTNVYCGHEY 246
G A FTGD + CG+ EG+ Q++ S+ +I +LP DT +Y H+Y
Sbjct: 126 TGEGADQPQPRMAFTGDAVLIRGCGRTDFQEGSSDQLYESVHSQIFTLPKDTLIYPAHDY 185
>pdb|4EFZ|A Chain A, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
pdb|4EFZ|B Chain B, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
Length = 298
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 162 IDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP--------GSAAVFTGDTLFSLSC 213
D +L+DGD + + TPGHT +++ AA F GDTLF
Sbjct: 122 FDRLLDDGDTLALGALSIRAMHTPGHTPACMTYVVTEAHAAHDARDAAAFVGDTLFMPDY 181
Query: 214 GKLFEGTPG----QMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAA 269
G PG ++ S++K++SLP T +Y H+Y +PN A+Q YA+
Sbjct: 182 GTARCDFPGGDARSLYRSIRKVLSLPPATRLYMCHDY-----------QPNGRAIQ-YAS 229
Query: 270 HIA-QLRSK 277
+A +LR
Sbjct: 230 TVADELREN 238
>pdb|2XF4|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
Typhimurium Ycbl
Length = 210
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 140 ELKARYGAKVIGS------------------GVDKDRIPGIDIVLNDGDKWMFAGHEVHV 181
EL YG VIG G+D+ + D LNDGD+ + V
Sbjct: 67 ELAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSVGNVTLQV 126
Query: 182 IDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGK--LFEGTPGQMFSSLQ-KIMSLPDDT 238
+ PGHT GH+ F+ S + +GD +F G+ G Q+ +++ K++ L DD
Sbjct: 127 LHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVGRSDFPRGDHTQLIDAIKRKLLPLGDDV 186
Query: 239 NVYCGH 244
GH
Sbjct: 187 TFIPGH 192
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Query: 165 VLNDGDKWMFAGHEVHVIDTPGHTRGHISF-YFPGS------AAVFTGDTLFSLSCGK-- 215
+L DGD+ F + V TPGHT H+S+ + G A+F+GD +F G+
Sbjct: 101 LLKDGDELHFGNVRIVVXHTPGHTPEHVSYLLYDGKTSPDVPXALFSGDFVFVGDVGRPD 160
Query: 216 LFEGTPG----------QMFSSLQKIMSLPDDTNVYCGH 244
L E G Q F SL+K +LPD V H
Sbjct: 161 LLERVAGESGSSEALARQXFRSLRKFEALPDHVQVLPAH 199
>pdb|4AD9|A Chain A, Crystal Structure Of Human Lactb2.
pdb|4AD9|B Chain B, Crystal Structure Of Human Lactb2.
pdb|4AD9|C Chain C, Crystal Structure Of Human Lactb2.
pdb|4AD9|D Chain D, Crystal Structure Of Human Lactb2.
pdb|4AD9|E Chain E, Crystal Structure Of Human Lactb2.
pdb|4AD9|F Chain F, Crystal Structure Of Human Lactb2
Length = 289
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 164 IVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQ 223
+ L DGD G + V+ TPGHT H++ A+F+GD + +FE
Sbjct: 123 VYLKDGDVIKTEGATLRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGT-TVFEDLYDY 181
Query: 224 MFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTI 282
M +SL++++ + D +Y GH + N++ +Q Y +H +R + + T+
Sbjct: 182 M-NSLKELLKIKADI-IYPGHGPVIHNAE---------AKIQQYISH-RNIREQQILTL 228
>pdb|2ZO4|A Chain A, Crystal Structure Of Metallo-Beta-Lactamase Family Protein
Ttha1429 From Thermus Thermophilus Hb8
Length = 317
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 156 KDRI--PGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFS 210
++R+ P + L DG+ AG + V+ TPGH GH +FY + GD L
Sbjct: 138 RERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAFYLEEEGVLLAGDALLE 194
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 25/181 (13%)
Query: 89 AYLLHDMDTGTVGVVDP-SEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGA 147
+YL+ TG ++DP + I + +T+ ++ + A
Sbjct: 39 SYLIGCQKTGEAMIIDPIRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKLNA 98
Query: 148 KVIGSGVDKD-----RIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAA- 201
+ SG D +P + D ++ V+ TPGHT ISF A
Sbjct: 99 NIYVSGESDDTLGYKNMPNHTHFVQHNDDIYVGNIKLKVLHTPGHTPESISFLLTDEGAG 158
Query: 202 ------VFTGDTLFSLSCGK--------LFEGT----PGQMFSSLQKIMSLPDDTNVYCG 243
+F+GD +F G+ EG+ QMF S++ I LPD ++ G
Sbjct: 159 AQVPMGLFSGDFIFVGDIGRPDLLEKAVKVEGSSEIGAKQMFKSIESIKDLPDYIQIWPG 218
Query: 244 H 244
H
Sbjct: 219 H 219
>pdb|3DH8|A Chain A, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
Length = 303
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 168 DGDKWMFAG--HEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGK------LFEG 219
DG+ W+ G H + VI+ GH+ H+ FY +F GD L + + +F+
Sbjct: 141 DGE-WLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGAFDEAEGVWRPLVFDD 199
Query: 220 TPGQMFSSLQKIMSLPDDTNVYCGH 244
+ SL+++ LP + GH
Sbjct: 200 MEAYL-ESLERLQRLPTLLQLIPGH 223
>pdb|2VW8|A Chain A, Crystal Structure Of Quinolone Signal Response Protein
Pqse From Pseudomonas Aeruginosa
Length = 303
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 168 DGDKWMFAG--HEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGK------LFEG 219
DG+ W+ G H + VI+ GH+ H+ FY +F GD L + +F+
Sbjct: 141 DGE-WLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGEFDEAEGVWRPLVFDD 199
Query: 220 TPGQMFSSLQKIMSLPDDTNVYCGH 244
+ SL+++ LP + GH
Sbjct: 200 MEAYL-ESLERLQRLPTLLQLIPGH 223
>pdb|2Q0I|A Chain A, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
Length = 303
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 168 DGDKWMFAG--HEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGK------LFEG 219
DG+ W+ G H + VI+ GH+ H+ FY +F GD L + +F+
Sbjct: 141 DGE-WLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGEFDEAEGVWRPLVFDD 199
Query: 220 TPGQMFSSLQKIMSLPDDTNVYCGH 244
+ SL+++ LP + GH
Sbjct: 200 MEAYL-ESLERLQRLPTLLQLIPGH 223
>pdb|2Q0J|A Chain A, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
pdb|2Q0J|B Chain B, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
Length = 321
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 168 DGDKWMFAG--HEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGK------LFEG 219
DG+ W+ G H + VI+ GH+ H+ FY +F GD L + +F+
Sbjct: 159 DGE-WLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGEFDEAEGVWRPLVFDD 217
Query: 220 TPGQMFSSLQKIMSLPDDTNVYCGH 244
+ SL+++ LP + GH
Sbjct: 218 MEAYL-ESLERLQRLPTLLQLIPGH 241
>pdb|3AJ0|A Chain A, Crystal Structure Of 4-Pyridoxolactonase From
Mesorhizobium Loti
Length = 268
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 168 DGDKWMFAGHEVHVIDTPGHTRGHISFY--FPGSAAV-FTGDTLFSLS-----CGKLFEG 219
DGD + G V +I TPGH+ GH S FP + FT D ++ C F
Sbjct: 168 DGDVDLARG--VKLISTPGHSIGHYSLLVEFPRRKPILFTIDAAYTQKSLETLCQAAFHI 225
Query: 220 TPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSK 252
P +S++K+ L +D + + + N K
Sbjct: 226 DPVAGVNSMRKVKKLAEDHGAELMYSHDMDNFK 258
>pdb|3ADR|A Chain A, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
pdb|3ADR|B Chain B, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
Length = 261
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 154 VDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSC 213
+D+D++ I + +++ G+ +I TPGH R H S +FTGD+ +
Sbjct: 119 LDQDKV----IEVEGNEEFDLGGYRXRLIYTPGHARHHXSVLV--DDFLFTGDSAGAYFN 172
Query: 214 GKLFEGTP 221
G + TP
Sbjct: 173 GVVIPTTP 180
>pdb|1S0I|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Sialyl-
Lactose (Michaelis Complex)
pdb|1S0J|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Munana
(Michaelis Complex)
Length = 648
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 212 SCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHE------YTLSNSKFALSIEPNNEALQ 265
+ G++ G +SS+ L D +YC HE Y+L ++ + LQ
Sbjct: 343 NVGQVSIGDENSAYSSV-----LYKDDKLYCLHEINSNEVYSLVFARLVGELRIIKSVLQ 397
Query: 266 SYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRT 298
S+ + L S P P E+ C P + T
Sbjct: 398 SWKNWDSHLSSICTPADPAASSSERGCGPAVTT 430
>pdb|1MS5|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
pdb|1MS5|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
Length = 648
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 212 SCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHE------YTLSNSKFALSIEPNNEALQ 265
+ G++ G +SS+ L D +YC HE Y+L ++ + LQ
Sbjct: 343 NVGQVSIGDENSAYSSV-----LYKDDKLYCLHEINSNEVYSLVFARLVGELRIIKSVLQ 397
Query: 266 SYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRT 298
S+ + L S P P E+ C P + T
Sbjct: 398 SWKNWDSHLSSICTPADPAASSSERGCGPAVTT 430
>pdb|1MR5|A Chain A, Orthorhombic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS0|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS0|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS1|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS1|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS3|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS3|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS8|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS8|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS9|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|1MS9|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|2AH2|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With
2,3-Difluorosialic Acid (Covalent Intermediate)
pdb|3B69|A Chain A, T Cruzi Trans-Sialidase Complex With Benzoylated Nana
Derivative
pdb|3OPZ|A Chain A, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|B Chain B, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|C Chain C, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
Length = 648
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 212 SCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHE------YTLSNSKFALSIEPNNEALQ 265
+ G++ G +SS+ L D +YC HE Y+L ++ + LQ
Sbjct: 343 NVGQVSIGDENSAYSSV-----LYKDDKLYCLHEINSNEVYSLVFARLVGELRIIKSVLQ 397
Query: 266 SYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRT 298
S+ + L S P P E+ C P + T
Sbjct: 398 SWKNWDSHLSSICTPADPAASSSERGCGPAVTT 430
>pdb|3AJ3|A Chain A, Crystal Structure Of Selenomethionine Substituted
4-Pyridoxolactonase From Mesorhizobium Loti
Length = 274
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 168 DGDKWMFAGHEVHVIDTPGHTRGHISFY--FPGSAAV-FTGDTLFSLS-----CGKLFEG 219
DGD + G V +I TPGH+ GH S FP + FT D ++ C F
Sbjct: 168 DGDVDLARG--VKLISTPGHSIGHYSLLVEFPRRKPILFTIDAAYTQKSLETLCQAAFHI 225
Query: 220 TPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSK 252
P +S +K+ L +D + + N K
Sbjct: 226 DPVAGVNSXRKVKKLAEDHGAELXYSHDXDNFK 258
>pdb|1L9Y|A Chain A, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
pdb|1L9Y|B Chain B, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
Length = 263
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 162 IDIVLNDGDKWMFAGHEVHVIDTPGHTRG 190
+D VL+DG++ G + TPGHTRG
Sbjct: 124 VDKVLHDGERVELGGTVLTAHLTPGHTRG 152
>pdb|1JT1|A Chain A, Fez-1 Metallo-Beta-Lactamase From Legionella Gormanii
Modelled With D- Captopril
pdb|1K07|A Chain A, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
pdb|1K07|B Chain B, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
Length = 263
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 162 IDIVLNDGDKWMFAGHEVHVIDTPGHTRG 190
+D VL+DG++ G + TPGHTRG
Sbjct: 124 VDKVLHDGERVELGGTVLTAHLTPGHTRG 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,048,878
Number of Sequences: 62578
Number of extensions: 349935
Number of successful extensions: 831
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 29
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)