Query 020215
Match_columns 329
No_of_seqs 342 out of 2897
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:57:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02398 hydroxyacylglutathion 100.0 4.8E-68 1E-72 490.9 32.4 328 1-329 1-329 (329)
2 PLN02469 hydroxyacylglutathion 100.0 2.2E-52 4.7E-57 377.8 29.9 249 76-329 1-256 (258)
3 TIGR03413 GSH_gloB hydroxyacyl 100.0 1E-51 2.2E-56 372.5 29.1 248 78-329 1-248 (248)
4 PRK10241 hydroxyacylglutathion 100.0 2.4E-50 5.3E-55 364.0 28.9 249 76-329 1-251 (251)
5 KOG0813 Glyoxylase [General fu 100.0 2.9E-45 6.3E-50 324.0 23.7 247 81-329 7-263 (265)
6 PLN02962 hydroxyacylglutathion 100.0 2E-33 4.4E-38 252.5 25.0 187 86-307 22-222 (251)
7 KOG0814 Glyoxylase [General fu 100.0 9.7E-28 2.1E-32 196.6 14.3 193 87-314 21-222 (237)
8 PRK11921 metallo-beta-lactamas 99.9 2.2E-24 4.7E-29 207.2 18.9 185 62-250 2-229 (394)
9 PRK05452 anaerobic nitric oxid 99.9 6.4E-24 1.4E-28 207.8 16.8 201 61-273 3-248 (479)
10 COG0491 GloB Zn-dependent hydr 99.9 1.2E-21 2.6E-26 175.2 18.5 162 84-246 22-212 (252)
11 smart00849 Lactamase_B Metallo 99.8 4.9E-20 1.1E-24 157.2 16.8 155 87-244 6-183 (183)
12 COG0426 FpaA Uncharacterized f 99.8 7.5E-20 1.6E-24 170.6 16.3 206 60-277 4-247 (388)
13 PF00753 Lactamase_B: Metallo- 99.8 1.9E-19 4.2E-24 153.6 12.1 155 87-244 6-194 (194)
14 PF14597 Lactamase_B_5: Metall 99.8 1.7E-17 3.6E-22 137.8 16.5 152 88-249 24-185 (199)
15 PRK11539 ComEC family competen 99.7 2.9E-16 6.3E-21 162.1 19.2 168 74-261 499-684 (755)
16 COG2333 ComEC Predicted hydrol 99.7 5.1E-16 1.1E-20 141.7 18.5 190 57-261 23-234 (293)
17 TIGR00361 ComEC_Rec2 DNA inter 99.7 1.1E-15 2.3E-20 156.0 18.9 168 75-258 439-623 (662)
18 TIGR00649 MG423 conserved hypo 99.6 5.5E-15 1.2E-19 143.5 14.4 123 87-211 14-163 (422)
19 COG2015 Alkyl sulfatase and re 99.5 2.2E-13 4.8E-18 128.1 9.1 222 60-296 110-398 (655)
20 PRK00685 metal-dependent hydro 99.3 1.1E-11 2.4E-16 110.2 11.2 156 84-248 6-196 (228)
21 TIGR03675 arCOG00543 arCOG0054 99.3 3.7E-12 8E-17 128.4 8.7 132 76-210 175-350 (630)
22 COG0595 mRNA degradation ribon 99.3 2.4E-11 5.2E-16 119.8 12.6 122 88-211 23-171 (555)
23 PRK11244 phnP carbon-phosphoru 99.3 8.8E-11 1.9E-15 106.1 13.0 116 88-209 38-165 (250)
24 COG1237 Metal-dependent hydrol 99.2 2.4E-10 5.1E-15 101.0 13.9 153 85-246 20-232 (259)
25 TIGR03307 PhnP phosphonate met 99.2 1.2E-10 2.6E-15 104.5 12.1 115 88-208 28-154 (238)
26 PRK04286 hypothetical protein; 99.2 9.7E-11 2.1E-15 108.5 11.4 120 87-208 15-187 (298)
27 PRK02113 putative hydrolase; P 99.2 1.2E-10 2.6E-15 105.3 10.7 116 87-209 35-172 (252)
28 PRK02126 ribonuclease Z; Provi 99.1 7.7E-10 1.7E-14 103.9 13.5 69 84-156 14-87 (334)
29 PRK05184 pyrroloquinoline quin 99.1 3.3E-10 7.1E-15 105.2 9.6 117 88-207 40-199 (302)
30 TIGR02108 PQQ_syn_pqqB coenzym 99.1 5E-10 1.1E-14 103.8 9.6 120 88-208 39-200 (302)
31 TIGR02651 RNase_Z ribonuclease 99.0 7.7E-10 1.7E-14 102.5 8.8 106 87-197 18-147 (299)
32 COG1782 Predicted metal-depend 99.0 2.4E-10 5.3E-15 108.5 4.9 119 89-210 196-356 (637)
33 COG1236 YSH1 Predicted exonucl 99.0 6.7E-10 1.4E-14 107.7 8.1 116 89-208 16-165 (427)
34 TIGR02649 true_RNase_BN ribonu 99.0 1.9E-09 4.1E-14 100.2 10.8 108 87-197 17-149 (303)
35 PF12706 Lactamase_B_2: Beta-l 99.0 4.8E-10 1E-14 96.7 5.8 109 100-209 2-140 (194)
36 KOG4736 Uncharacterized conser 98.9 2.8E-09 6E-14 95.4 6.8 149 89-250 97-260 (302)
37 PRK11709 putative L-ascorbate 98.8 2.3E-08 5E-13 94.5 11.4 150 120-276 108-308 (355)
38 PF13483 Lactamase_B_3: Beta-l 98.8 2.9E-08 6.4E-13 83.7 9.3 104 84-209 5-116 (163)
39 KOG1136 Predicted cleavage and 98.6 5.8E-08 1.2E-12 88.3 6.5 119 89-210 19-182 (501)
40 PRK00055 ribonuclease Z; Revie 98.6 8.8E-08 1.9E-12 87.1 6.2 66 87-156 20-95 (270)
41 COG2248 Predicted hydrolase (m 98.4 5.2E-06 1.1E-10 73.1 12.0 155 89-245 17-248 (304)
42 KOG1137 mRNA cleavage and poly 98.3 4.5E-07 9.7E-12 87.3 4.3 118 89-209 29-184 (668)
43 COG1235 PhnP Metal-dependent h 98.2 1.4E-05 2.9E-10 73.1 12.1 54 100-154 42-95 (269)
44 COG2220 Predicted Zn-dependent 98.2 1.2E-05 2.7E-10 72.9 10.4 124 83-209 11-162 (258)
45 KOG1135 mRNA cleavage and poly 97.9 8.2E-05 1.8E-09 73.7 9.7 118 88-208 16-173 (764)
46 COG1234 ElaC Metal-dependent h 97.7 5.7E-05 1.2E-09 69.8 6.4 63 88-154 21-93 (292)
47 TIGR02650 RNase_Z_T_toga ribon 97.7 7.9E-05 1.7E-09 67.7 6.8 64 89-157 12-84 (277)
48 KOG1361 Predicted hydrolase in 96.9 0.0012 2.6E-08 64.1 5.1 86 121-209 112-207 (481)
49 PF02112 PDEase_II: cAMP phosp 96.2 0.0086 1.9E-07 56.2 5.6 19 121-139 79-97 (335)
50 KOG2121 Predicted metal-depend 94.1 0.057 1.2E-06 54.7 4.1 59 85-144 459-524 (746)
51 PF14234 DUF4336: Domain of un 93.0 1.4 3.1E-05 40.4 11.1 122 89-211 22-162 (285)
52 KOG3798 Predicted Zn-dependent 86.2 2.2 4.8E-05 38.2 6.2 90 120-210 131-242 (343)
53 PF13691 Lactamase_B_4: tRNase 78.4 7.6 0.00017 27.1 5.3 45 89-137 14-63 (63)
54 COG5212 PDE1 Low-affinity cAMP 73.8 1.2 2.6E-05 40.3 0.4 36 120-155 111-150 (356)
55 KOG3592 Microtubule-associated 73.3 4.8 0.00011 41.2 4.4 46 97-143 56-103 (934)
56 cd07409 MPP_CD73_N CD73 ecto-5 45.4 2.4E+02 0.0051 25.6 12.2 118 109-246 72-193 (281)
57 PF14572 Pribosyl_synth: Phosp 44.9 29 0.00063 29.8 3.6 61 90-152 76-142 (184)
58 COG1433 Uncharacterized conser 42.6 1.7E+02 0.0036 23.3 7.4 66 82-154 18-94 (121)
59 TIGR01530 nadN NAD pyrophospha 35.7 4.8E+02 0.01 26.4 12.2 38 111-152 74-114 (550)
60 COG0052 RpsB Ribosomal protein 34.9 58 0.0013 29.3 4.1 37 99-135 159-195 (252)
61 COG1107 Archaea-specific RecJ- 33.9 31 0.00067 34.8 2.4 37 100-136 421-458 (715)
62 cd08162 MPP_PhoA_N Synechococc 33.3 4E+02 0.0087 24.7 12.4 30 110-143 70-99 (313)
63 cd07400 MPP_YydB Bacillus subt 31.1 85 0.0018 24.9 4.3 12 199-210 37-48 (144)
64 cd07406 MPP_CG11883_N Drosophi 30.8 3.9E+02 0.0084 23.8 10.0 25 223-247 159-183 (257)
65 PRK11148 cyclic 3',5'-adenosin 28.9 90 0.002 28.2 4.5 37 200-244 58-94 (275)
66 PRK04923 ribose-phosphate pyro 27.9 1.3E+02 0.0028 28.2 5.5 55 97-153 217-277 (319)
67 KOG1145 Mitochondrial translat 26.7 58 0.0013 32.9 2.9 52 129-189 159-213 (683)
68 KOG1448 Ribose-phosphate pyrop 25.8 1.5E+02 0.0032 27.5 5.2 44 89-132 206-254 (316)
69 PRK02458 ribose-phosphate pyro 25.0 1.4E+02 0.003 28.0 5.1 55 97-153 218-278 (323)
70 PF06415 iPGM_N: BPG-independe 24.8 22 0.00049 31.4 -0.2 26 129-154 42-68 (223)
71 COG4566 TtrR Response regulato 23.9 1.4E+02 0.0031 25.8 4.5 42 99-141 50-95 (202)
72 COG0462 PrsA Phosphoribosylpyr 23.8 91 0.002 29.1 3.5 62 89-152 206-273 (314)
73 cd07393 MPP_DR1119 Deinococcus 21.8 1.6E+02 0.0035 25.8 4.7 39 199-245 43-82 (232)
74 KOG0303 Actin-binding protein 21.1 2.7E+02 0.0057 27.0 6.0 71 60-131 158-229 (472)
No 1
>PLN02398 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=4.8e-68 Score=490.87 Aligned_cols=328 Identities=85% Similarity=1.326 Sum_probs=311.8
Q ss_pred CchhhhhhhhhhhhccccccC-CCcccCCCcccccccchhhhhHHHhhcCCCCCcccCcceeeeeceeeeecCCCcceEE
Q 020215 1 MQMISRASSAAMASFTCSRGQ-SGLCVVPGPRQLCLRKGLLYGFMRLLSMPFKTLHLASRSLRVAEFCSISNMSSSLQIE 79 (329)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~v~~g~~~~~~~~~~~i~ 79 (329)
||||||+|| ++++..|+++. +++|+||..|++++++++++++++++.+|.++.++++.++.+++.+..-..+..|++.
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 79 (329)
T PLN02398 1 MQMISKASS-AMSSFRCSRRIRGQLCVRPGVRQLCLRKSLLYGVMKLLSMPLKTLRGAGRTLKVAQFCSVSNVSSSLQIE 79 (329)
T ss_pred Ccchhhhhh-ccccCcchhhhcCcccccchhhhhhcccchhHHHHHHHhCchhhccccchhhhhhhhhcccCCCCCcEEE
Confidence 899999999 78888999997 9999999999999999999999999999999999999999999997777776789999
Q ss_pred EeceecceEEEEEEECCCCeEEEEcCCCcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhhCCeEEecCCcCCCC
Q 020215 80 LVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRI 159 (329)
Q Consensus 80 ~~~~~~~n~~yli~~~~~g~~vliD~g~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~ 159 (329)
.+|++.+||+|+|.+++++.+++|||+....+++.+++.+.+|++|++||.|+||+||+.+|.+.++++||+++.+.+.+
T Consensus 80 ~ip~l~dNy~Yli~d~~t~~~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~ga~V~g~~~~~~~i 159 (329)
T PLN02398 80 LVPCLKDNYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARYGAKVIGSAVDKDRI 159 (329)
T ss_pred EEeeeCceEEEEEEECCCCEEEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhcCCEEEEehHHhhhc
Confidence 99999999999999887888999999999999999999999999999999999999999999999999999998877777
Q ss_pred CCccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeCCCcEEEECCccccCcCCCCCCCCHHHHHHHHHHHhCCCCCeE
Q 020215 160 PGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTN 239 (329)
Q Consensus 160 ~~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~~~~~lftGD~l~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~~ 239 (329)
+..+..+.+|+.+.+|+.+++++++||||+||++|++++.++||+||++|..++++++++++++|++||++|.+|++++.
T Consensus 160 ~~~d~~v~dGd~i~lgg~~l~vi~tPGHT~GhI~~~~~~~~vLFtGDtLf~~g~Gr~feg~~~~~~~SL~rL~~L~~~t~ 239 (329)
T PLN02398 160 PGIDIVLKDGDKWMFAGHEVLVMETPGHTRGHISFYFPGSGAIFTGDTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTN 239 (329)
T ss_pred cCCcEEeCCCCEEEECCeEEEEEeCCCcCCCCEEEEECCCCEEEECCCcCCCCcCCCCCCCHHHHHHHHHHHHcCCCCeE
Confidence 77888899999999999999999999999999999998888999999999999999999999999999999999999988
Q ss_pred EEeCCCccccChhhhcccCCChHHHHHHHHHHHHHHhCCCCCCCCcHHhHHhcCCccCCCchHHHHhcCCCCCCCHHHHH
Q 020215 240 VYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEAL 319 (329)
Q Consensus 240 v~pgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~e~~~np~l~~~~~~~~~~~~~~~~~~~~~~~ 319 (329)
||||||++.+|.+|+..++|+++.++.+.+++++++++|.+++|++|++|+++|||+|..++++++.++++...++.++|
T Consensus 240 VypGHgyt~~Nl~Fa~~vep~n~~l~~~~~~v~~~r~~~~~t~Pstl~~E~~~NPFlR~~~~~v~~~~~~~~~~~~~~~f 319 (329)
T PLN02398 240 IYCGHEYTLSNSKFALSIEPNNEVLQSYAAHVAHLRSKGLPTIPTTVKMEKACNPFLRTSSTDIRKSLSIPDTADEAEAL 319 (329)
T ss_pred EECCCCChhcchhhHhhhCCChHHHHHHHHHHHHHHHcCCCcCCccHHHHHhhCCeecCCCHHHHHHhcCccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875557899999
Q ss_pred HHHHhhhcCC
Q 020215 320 GVIRQAKDNF 329 (329)
Q Consensus 320 ~~lr~~~~~~ 329 (329)
..||+|||+|
T Consensus 320 ~~lR~~Kd~f 329 (329)
T PLN02398 320 GIIRRAKDNF 329 (329)
T ss_pred HHHHHHhhCC
Confidence 9999999998
No 2
>PLN02469 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=2.2e-52 Score=377.84 Aligned_cols=249 Identities=45% Similarity=0.782 Sum_probs=227.7
Q ss_pred ceEEEeceecceEEEEEEECCCCeEEEEcCCCcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhh-CCeEEecCC
Q 020215 76 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY-GAKVIGSGV 154 (329)
Q Consensus 76 ~~i~~~~~~~~n~~yli~~~~~g~~vliD~g~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~-~~~v~~~~~ 154 (329)
|++..+|.+..|++|||.+++++++++|||+....+++.+++.+.+|++|++||.|+||+||+..|.+.+ +++||++..
T Consensus 1 ~~i~~~~~~~dNy~Yli~d~~~~~~vlIDp~~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~ 80 (258)
T PLN02469 1 MKIIPVPCLEDNYAYLIIDESTKDAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSL 80 (258)
T ss_pred CeEEEeccccceEEEEEEeCCCCeEEEECCCChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEech
Confidence 4577788899999999998777789999999988999999999999999999999999999999999987 799999865
Q ss_pred cCCCCCCccEEccCCCEEEECC-eEEEEEecCCCCCCCEEEEeCC----CcEEEECCccccCcCCCCCCCCHHHHHHHHH
Q 020215 155 DKDRIPGIDIVLNDGDKWMFAG-HEVHVIDTPGHTRGHISFYFPG----SAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQ 229 (329)
Q Consensus 155 ~~~~~~~~~~~~~~g~~~~~g~-~~v~~~~~pgHt~g~~~~~~~~----~~~lftGD~l~~~~~~~~~~~~~~~~~~sl~ 229 (329)
+ .++.....+.+|+.+.+|+ ..+++++|||||+||++|++++ .++|||||++|.+++++++++++++|++||+
T Consensus 81 ~--~~~~~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~~g~Gr~~~g~~~~~~~Sl~ 158 (258)
T PLN02469 81 D--NVKGCTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCGKFFEGTAEQMYQSLC 158 (258)
T ss_pred h--cCCCCCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccCCCcCCCCCCCHHHHHHHHH
Confidence 4 2344567789999999985 6899999999999999999863 4699999999999999999999999999998
Q ss_pred H-HhCCCCCeEEEeCCCccccChhhhcccCCChHHHHHHHHHHHHHHhCCCCCCCCcHHhHHhcCCccCCCchHHHHhcC
Q 020215 230 K-IMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLR 308 (329)
Q Consensus 230 ~-l~~l~~~~~v~pgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~e~~~np~l~~~~~~~~~~~~ 308 (329)
+ +..|+++++||||||++..+.+|+.+++|.++.++.+.+++++++++|.+++|++|++|+++|||+|..++++++.++
T Consensus 159 ~~l~~Lp~~t~vypGH~yt~~nl~Fa~~vep~n~~~~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~~~~~~~~~ 238 (258)
T PLN02469 159 VTLGSLPKPTQVYCGHEYTVKNLKFALTVEPDNEKLKQKLEWAEKQRQAGLPTVPSTIEEELETNPFMRVDLPEIQEKVG 238 (258)
T ss_pred HHHHcCCCCeEEEcCCCCchhHHHHHHhhCCCCHHHHHHHHHHHHHHHCCCCcCCccHHHHHhhCCeecCCCHHHHHHhc
Confidence 5 566999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHhhhcCC
Q 020215 309 IPDTADDSEALGVIRQAKDNF 329 (329)
Q Consensus 309 ~~~~~~~~~~~~~lr~~~~~~ 329 (329)
. .++.++|..||+|||+|
T Consensus 239 ~---~~~~~~f~~lR~~kd~f 256 (258)
T PLN02469 239 C---ESPVEALREVRKMKDNW 256 (258)
T ss_pred C---CCHHHHHHHHHHHHhcc
Confidence 3 67899999999999998
No 3
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=100.00 E-value=1e-51 Score=372.49 Aligned_cols=248 Identities=53% Similarity=0.904 Sum_probs=231.0
Q ss_pred EEEeceecceEEEEEEECCCCeEEEEcCCCcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhhCCeEEecCCcCC
Q 020215 78 IELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKD 157 (329)
Q Consensus 78 i~~~~~~~~n~~yli~~~~~g~~vliD~g~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~ 157 (329)
|..+|++++||+|||.+++ +.+++||||....+++.|++.+.++++|++||.|.||+||+..+.+.++++||+++.+
T Consensus 1 v~~~~~~~dN~~yli~~~~-~~~ilID~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~~~V~~~~~~-- 77 (248)
T TIGR03413 1 IIPIPALSDNYIWLLHDPD-GQAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFPAPVYGPAEE-- 77 (248)
T ss_pred CEEecccccEEEEEEEcCC-CCEEEEcCCChHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCCCeEEecccc--
Confidence 3567889999999998865 6899999998888999999999899999999999999999999999889999998765
Q ss_pred CCCCccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeCCCcEEEECCccccCcCCCCCCCCHHHHHHHHHHHhCCCCC
Q 020215 158 RIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDD 237 (329)
Q Consensus 158 ~~~~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~~~~~lftGD~l~~~~~~~~~~~~~~~~~~sl~~l~~l~~~ 237 (329)
.++.....+.+|+.+.+|+..++++++||||+||++|++++.++||+||+++..+++++++++.++|++||+++.+++++
T Consensus 78 ~~~~~~~~v~~g~~~~~g~~~i~v~~tpGHT~g~i~~~~~~~~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~ 157 (248)
T TIGR03413 78 RIPGITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLPDSPALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDD 157 (248)
T ss_pred cCCCCcEEeCCCCEEEECCEEEEEEECCCCCcccEEEEECCCCEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCC
Confidence 34555678899999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eEEEeCCCccccChhhhcccCCChHHHHHHHHHHHHHHhCCCCCCCCcHHhHHhcCCccCCCchHHHHhcCCCCCCCHHH
Q 020215 238 TNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSE 317 (329)
Q Consensus 238 ~~v~pgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~e~~~np~l~~~~~~~~~~~~~~~~~~~~~ 317 (329)
++||||||++..+.+|+.+++|.+++++.+.+++++++++|.+++|+++++|+++|||+|..++++++.+++. ..++.+
T Consensus 158 ~~i~pGH~~~~~n~~fa~~~~p~~~~l~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~~~~~~~~~~~-~~~~~~ 236 (248)
T TIGR03413 158 TLVYCAHEYTLSNLRFALTVEPDNPALQERLKEVEALRAQGQPTLPSTLGLERATNPFLRADDPAVRAALGSQ-GADPVE 236 (248)
T ss_pred eEEECCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHhhCCeecCCCHHHHHHhcCc-CCCHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999998754 368899
Q ss_pred HHHHHHhhhcCC
Q 020215 318 ALGVIRQAKDNF 329 (329)
Q Consensus 318 ~~~~lr~~~~~~ 329 (329)
+|..||++||+|
T Consensus 237 ~~~~lr~~kd~~ 248 (248)
T TIGR03413 237 VFAALRAWKDNF 248 (248)
T ss_pred HHHHHHHHhhCC
Confidence 999999999998
No 4
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=100.00 E-value=2.4e-50 Score=364.01 Aligned_cols=249 Identities=42% Similarity=0.720 Sum_probs=228.3
Q ss_pred ceEEEeceecceEEEEEEECCCCeEEEEcCCCcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhh-CCeEEecCC
Q 020215 76 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY-GAKVIGSGV 154 (329)
Q Consensus 76 ~~i~~~~~~~~n~~yli~~~~~g~~vliD~g~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~-~~~v~~~~~ 154 (329)
|+|..+|.+..|++|+|.+. ++.+++||||....+++.|++.+.++++|++||.|.||+||+..|.+++ +++||++..
T Consensus 1 ~~i~~~~~~~dNy~~li~~~-~~~~ilIDpg~~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~ 79 (251)
T PRK10241 1 MNLNSIPAFDDNYIWVLNDE-AGRCLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQE 79 (251)
T ss_pred CeeEEeeeecceEEEEEEcC-CCcEEEECCCChHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEeccc
Confidence 57889999999999999875 4679999999999999999999989999999999999999999999987 589999765
Q ss_pred cCCCCCCccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeCCCcEEEECCccccCcCCCCCCCCHHHHHHHHHHHhCC
Q 020215 155 DKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSL 234 (329)
Q Consensus 155 ~~~~~~~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~~~~~lftGD~l~~~~~~~~~~~~~~~~~~sl~~l~~l 234 (329)
... +.....+.+|+.+.+|+.+++++++||||+||++|+.+ +++|+||+++.+++++++++++++|++||+++.+|
T Consensus 80 ~~~--~~~~~~v~~g~~i~ig~~~~~vi~tPGHT~ghi~~~~~--~~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~~l 155 (251)
T PRK10241 80 TQD--KGTTQVVKDGETAFVLGHEFSVFATPGHTLGHICYFSK--PYLFCGDTLFSGGCGRLFEGTASQMYQSLKKINAL 155 (251)
T ss_pred ccc--cCCceEeCCCCEEEeCCcEEEEEEcCCCCccceeeecC--CcEEEcCeeccCCcCCCCCCCHHHHHHHHHHHHcC
Confidence 432 23456788999999999999999999999999999863 68999999999999999999999999999999999
Q ss_pred CCCeEEEeCCCccccChhhhcccCCChHHHHHHHHHHHHHHhCCCCCCCCcHHhHHhcCCccCCCchHHHHhcCCCC-CC
Q 020215 235 PDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPD-TA 313 (329)
Q Consensus 235 ~~~~~v~pgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~e~~~np~l~~~~~~~~~~~~~~~-~~ 313 (329)
+++++|||||+++..+.+|+.+++|.+++++.+.+++++++++|.+++|+++++|+++|||+|..++++++.++... ..
T Consensus 156 ~~~t~i~pgH~y~~~n~~fa~~~~p~n~~l~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~~~~~~~~~~~~~~~ 235 (251)
T PRK10241 156 PDDTLICCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINLFLRTEDIDLINVINEETLLQ 235 (251)
T ss_pred CCCEEEECCCCChhhhHHHHHHhCCCCHHHHHHHHHHHHHHHCCCCcCCccHHHHHhhCCeecCCCHHHHHHhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887432 26
Q ss_pred CHHHHHHHHHhhhcCC
Q 020215 314 DDSEALGVIRQAKDNF 329 (329)
Q Consensus 314 ~~~~~~~~lr~~~~~~ 329 (329)
++.++|.+||+|||+|
T Consensus 236 ~~~~~f~~lr~~kd~~ 251 (251)
T PRK10241 236 QPEERFAWLRSKKDRF 251 (251)
T ss_pred CHHHHHHHHHHHhcCC
Confidence 7899999999999998
No 5
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=100.00 E-value=2.9e-45 Score=324.05 Aligned_cols=247 Identities=49% Similarity=0.797 Sum_probs=230.0
Q ss_pred eceecceEEEEEEE-CCCCeEEEEcCCCcHHHHHHHHh---cCCCccEEecCCCCcCccCChHHHHHh--hCCeEEecCC
Q 020215 81 VPCLRDNYAYLLHD-MDTGTVGVVDPSEAVPVIDALSR---KNRNLTYILNTHHHHDHTGGNLELKAR--YGAKVIGSGV 154 (329)
Q Consensus 81 ~~~~~~n~~yli~~-~~~g~~vliD~g~~~~~~~~l~~---~g~~i~~ii~TH~H~DH~gg~~~l~~~--~~~~v~~~~~ 154 (329)
.|.++.||+||+.+ ++++.+.++||.....+.+.+++ .+.++.+|+.||+|+||+||+..|.+. ++++++.+.
T Consensus 7 ~~~~~~Ny~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~- 85 (265)
T KOG0813|consen 7 LPTLQDNYMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGA- 85 (265)
T ss_pred ccccCCceEEEEecccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCC-
Confidence 66789999999999 77888999999988888888777 678999999999999999999999998 478999886
Q ss_pred cCCCCCCccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeCC---CcEEEECCccccCcCCCCCCCCHHHHHHHHHHH
Q 020215 155 DKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPG---SAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKI 231 (329)
Q Consensus 155 ~~~~~~~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~~---~~~lftGD~l~~~~~~~~~~~~~~~~~~sl~~l 231 (329)
.+..+.....+++|+.+.++|.++++++|||||.||+||++.+ .+.+||||++|..+||++|++.+++|..+++.+
T Consensus 86 -~~r~~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGDtlf~~GcG~~FEgt~~~M~~sl~~l 164 (265)
T KOG0813|consen 86 -DDRIPGITRGLKDGETVTVGGLEVRCLHTPGHTAGHICYYVTESTGERAIFTGDTLFGAGCGRFFEGTAEQMDSSLNEL 164 (265)
T ss_pred -hhcCccccccCCCCcEEEECCEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCCceeecCccchhcCCHHHHHHhHHHh
Confidence 3456677778999999999999999999999999999999985 899999999999999999999999999999999
Q ss_pred hCCCCCeEEEeCCCccccChhhhcccCCChHHHHHHHHHHHHHHhCCCCC-CCCcHHhHHhcCCccCCCchHHHHhcCCC
Q 020215 232 MSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPT-IPTTIKMEKSCNPFLRTSSPEIRQSLRIP 310 (329)
Q Consensus 232 ~~l~~~~~v~pgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~-~~~~l~~e~~~np~l~~~~~~~~~~~~~~ 310 (329)
..|++++.|||||++..++.+|+..+++.+...++..+++.+..+++.++ .|.++++|+.+|||++..++.+++.++.+
T Consensus 165 ~~L~~~t~iypGHeYt~~n~kf~~~ve~~n~~~q~~l~~~~~~~~~~~~t~~p~tl~~e~~~Npf~r~~~~~v~k~~g~~ 244 (265)
T KOG0813|consen 165 IALPDDTRIYPGHEYTKSNLKFARYVEPRNEVEQEKLDWLVERRSKEKPTMVPSTLGEEKLYNPFMRLKKEKVQKALGLT 244 (265)
T ss_pred hcCCCCceEccCcccccccceeeeecccccHHHHHHHHHHHHHhhccCcccChhhHHHHHhcCchhhcchHhhhhhhCCc
Confidence 99999999999999999999999999999999999999999999999998 89999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHhhhcCC
Q 020215 311 DTADDSEALGVIRQAKDNF 329 (329)
Q Consensus 311 ~~~~~~~~~~~lr~~~~~~ 329 (329)
.+.++..+|..||++||.|
T Consensus 245 ~~~~~~~~m~~lr~~K~~~ 263 (265)
T KOG0813|consen 245 ETADRIVVMGKLRELKNRF 263 (265)
T ss_pred ccccHHHHHHHHHHhhhcc
Confidence 8889999999999999987
No 6
>PLN02962 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=2e-33 Score=252.49 Aligned_cols=187 Identities=30% Similarity=0.509 Sum_probs=156.5
Q ss_pred ceEEEEEEECC--CCeEEEEcCCC--cHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhh-CCeEEecCCcCCCCC
Q 020215 86 DNYAYLLHDMD--TGTVGVVDPSE--AVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY-GAKVIGSGVDKDRIP 160 (329)
Q Consensus 86 ~n~~yli~~~~--~g~~vliD~g~--~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~-~~~v~~~~~~~~~~~ 160 (329)
.+|+|||.+++ ++.+++|||+. ...+++.+++.+.+|.+|++||.|.||++|+.+|++++ ++++++++... .
T Consensus 22 ~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~~---~ 98 (251)
T PLN02962 22 STYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKASG---S 98 (251)
T ss_pred eeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEeccccC---C
Confidence 34699998852 57899999983 46678889988999999999999999999999999886 89999876432 2
Q ss_pred CccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeCC------CcEEEECCccccCcCCC--CCCCCHHHHHHHHH-HH
Q 020215 161 GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPG------SAAVFTGDTLFSLSCGK--LFEGTPGQMFSSLQ-KI 231 (329)
Q Consensus 161 ~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~~------~~~lftGD~l~~~~~~~--~~~~~~~~~~~sl~-~l 231 (329)
..+..+.+|+.+.+|+.++++++|||||+||++|++++ .+++|+||++|.+++++ +++++..++++||+ ++
T Consensus 99 ~~d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~g~Gr~d~~~g~~~~l~~Sl~~~l 178 (251)
T PLN02962 99 KADLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSDQLYKSVHSQI 178 (251)
T ss_pred CCCEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccCCcCCCCCCCCCHHHHHHHHHHHH
Confidence 24567899999999999999999999999999999853 36999999999998888 56889999999996 78
Q ss_pred hCCCCCeEEEeCCCccccChhhhcccCCChHHHHHHHHHHHHHHhCCCCCCCCcHHhHHhcCCccCCCchHHHHhc
Q 020215 232 MSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSL 307 (329)
Q Consensus 232 ~~l~~~~~v~pgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~e~~~np~l~~~~~~~~~~~ 307 (329)
..|+++++||||||+... .++++++|++.|||+....++..+.+
T Consensus 179 ~~L~~~~~i~PGHg~~~~--------------------------------~~tti~~e~~~n~~l~~~~~~fv~~~ 222 (251)
T PLN02962 179 FTLPKDTLIYPAHDYKGF--------------------------------TVSTVGEEMLYNPRLTKDEETFKTIM 222 (251)
T ss_pred HcCCCCeEEECCCCCCCC--------------------------------CCcCHHHHHhhCcccCCCHHHHHHHH
Confidence 889999899999996221 15899999999999986555544433
No 7
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=99.95 E-value=9.7e-28 Score=196.61 Aligned_cols=193 Identities=34% Similarity=0.547 Sum_probs=163.9
Q ss_pred eEEEEEEECCCCeEEEEcCC--CcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhh-CCeEEecCCcCCCCCCcc
Q 020215 87 NYAYLLHDMDTGTVGVVDPS--EAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY-GAKVIGSGVDKDRIPGID 163 (329)
Q Consensus 87 n~~yli~~~~~g~~vliD~g--~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~-~~~v~~~~~~~~~~~~~~ 163 (329)
.++||+.+..++.+++|||- ....-.+.+++.|.++.|-++||.|.||+-|...++..+ +++-+++...- ...+
T Consensus 21 TytYll~d~~~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~pg~kSVis~~SG---akAD 97 (237)
T KOG0814|consen 21 TYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLPGCKSVISSASG---AKAD 97 (237)
T ss_pred eEEEEeeeCCCCceEEecchhhcccchHHHHHhcCceeeeeecceeecccccccchHHHhcccHHHHhhhccc---cccc
Confidence 46999999989999999997 333456678889999999999999999999999998876 66544444322 2346
Q ss_pred EEccCCCEEEECCeEEEEEecCCCCCCCEEEEeCCCcEEEECCccccCcCCC--CCCCCHHHHHHHH-HHHhCCCCCeEE
Q 020215 164 IVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGK--LFEGTPGQMFSSL-QKIMSLPDDTNV 240 (329)
Q Consensus 164 ~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~~~~~lftGD~l~~~~~~~--~~~~~~~~~~~sl-~~l~~l~~~~~v 240 (329)
..+.+|+.+++|+..+++..|||||+|.+.|+..+.+..||||++...+|++ +.++.+...++|. .++..||.+++|
T Consensus 98 ~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~d~~~aFTGDalLIRgCGRTDFQqG~~~~LyesVH~kIFTLP~d~~i 177 (237)
T KOG0814|consen 98 LHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVEHDLRMAFTGDALLIRGCGRTDFQQGCPASLYESVHSKIFTLPEDYLI 177 (237)
T ss_pred cccCCCCEEEEccEEEEEecCCCCCCceEEEEecCcceeeecceeEEeccCccchhccChHHHHHHHhHHheeCCCceEE
Confidence 7889999999999999999999999999999999999999999999999999 4688999999988 689999999999
Q ss_pred EeCCCccccChhhhcccCCChHHHHHHHHHHHHHHhCCCCCCCCcHHhHHhcCCccCCCchH---HHHhcCCCCCCC
Q 020215 241 YCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPE---IRQSLRIPDTAD 314 (329)
Q Consensus 241 ~pgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~e~~~np~l~~~~~~---~~~~~~~~~~~~ 314 (329)
||+|++-. .. .+++.+|+..||.|....+| +.++++++++.+
T Consensus 178 YpaHdY~G------------------------------~~--~stV~EEk~~NPRLTk~~eeFv~IM~NLnL~yPk~ 222 (237)
T KOG0814|consen 178 YPAHDYKG------------------------------FL--VSTVWEEKNLNPRLTKSKEEFVKIMKNLNLPYPKQ 222 (237)
T ss_pred eeccccCc------------------------------eE--eeehhhhhccCcccccCHHHHHHHHHhcCCCChhh
Confidence 99999732 22 58999999999999988775 567888887654
No 8
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.92 E-value=2.2e-24 Score=207.16 Aligned_cols=185 Identities=16% Similarity=0.277 Sum_probs=137.7
Q ss_pred eeeceeeeecCCC----cceE--EEeceecceEEEEEEECCCCeEEEEcCCC---cHHHHHHHHhc-C-CCccEEecCCC
Q 020215 62 RVAEFCSISNMSS----SLQI--ELVPCLRDNYAYLLHDMDTGTVGVVDPSE---AVPVIDALSRK-N-RNLTYILNTHH 130 (329)
Q Consensus 62 ~v~~g~~~~~~~~----~~~i--~~~~~~~~n~~yli~~~~~g~~vliD~g~---~~~~~~~l~~~-g-~~i~~ii~TH~ 130 (329)
++.+++||++.-. .++. ...+.+...|+|||.+ ++.+|||+|. ...+++.+++. + .+|++|++||.
T Consensus 2 ~i~~~v~~vg~~d~~~~~f~~~~~~~~~g~~~NsyLI~~---~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~ 78 (394)
T PRK11921 2 KINDNVTWVGKIDWELRKFHGEEYSTHRGSSYNSYLIKD---EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHG 78 (394)
T ss_pred eecCCeEEEeeecCCcceecceEeecCCceEEEEEEEeC---CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCC
Confidence 4677888876621 1332 3455566778999964 3589999984 34566667653 3 47999999999
Q ss_pred CcCccCChHHHHHhh-CCeEEecCCcCCCCC------CccEEccCCCEEEECCeEEEEEecCC-CCCCCEEEEeCCCcEE
Q 020215 131 HHDHTGGNLELKARY-GAKVIGSGVDKDRIP------GIDIVLNDGDKWMFAGHEVHVIDTPG-HTRGHISFYFPGSAAV 202 (329)
Q Consensus 131 H~DH~gg~~~l~~~~-~~~v~~~~~~~~~~~------~~~~~~~~g~~~~~g~~~v~~~~~pg-Ht~g~~~~~~~~~~~l 202 (329)
|+||+||+..+.+.+ +++|++++...+.+. .....+++|+.+++|+.+++++++|| |+||++++|+++.++|
T Consensus 79 H~DHiggl~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~~~~vL 158 (394)
T PRK11921 79 EIDHSGALPELMKEIPDTPIYCTKNGAKSLKGHYHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLTGDNIL 158 (394)
T ss_pred CCchhhHHHHHHHHCCCCEEEECHHHHHHHHHHhCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEcCCCEE
Confidence 999999999998876 789999876543221 12356789999999999999999998 9999999999999999
Q ss_pred EECCccccCcCCC-CCCCC---------------------HHHHHHHHHHHh--CCCCCeEEEeCCCccccC
Q 020215 203 FTGDTLFSLSCGK-LFEGT---------------------PGQMFSSLQKIM--SLPDDTNVYCGHEYTLSN 250 (329)
Q Consensus 203 ftGD~l~~~~~~~-~~~~~---------------------~~~~~~sl~~l~--~l~~~~~v~pgHg~~~~~ 250 (329)
|+||++....+.. +++.. ...+.+.|++|. .++.+ +|+|+||+..+.
T Consensus 159 FsgD~fG~~~~~~~~~~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~~l~~~~l~~~-~i~p~HG~i~~~ 229 (394)
T PRK11921 159 FSNDAFGQHYASELMYNDLVDQGELYQEAIKYYANILTPFSPLVIKKIEEILSLNLPVD-MICPSHGVIWRD 229 (394)
T ss_pred EecCcccccccCcccccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCC-EEEcCCccEEeC
Confidence 9999976543332 22211 134566788888 45777 599999987654
No 9
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.91 E-value=6.4e-24 Score=207.78 Aligned_cols=201 Identities=19% Similarity=0.300 Sum_probs=143.7
Q ss_pred eeeeceeeeecCC----CcceE--EEeceecceEEEEEEECCCCeEEEEcCCC---cHHHHHHHHh-cC-CCccEEecCC
Q 020215 61 LRVAEFCSISNMS----SSLQI--ELVPCLRDNYAYLLHDMDTGTVGVVDPSE---AVPVIDALSR-KN-RNLTYILNTH 129 (329)
Q Consensus 61 ~~v~~g~~~~~~~----~~~~i--~~~~~~~~n~~yli~~~~~g~~vliD~g~---~~~~~~~l~~-~g-~~i~~ii~TH 129 (329)
+++.+++||++.- ..++. ...+.+...|+|||.+ ++.+|||||. ...+++.+++ .+ .+|++|++||
T Consensus 3 ~~i~~~vy~vg~~d~~~~~F~~~~~~~~~G~t~NsYLI~~---~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH 79 (479)
T PRK05452 3 IHVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIRE---EKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINH 79 (479)
T ss_pred EEecCCeEEEeeecCCccccccceeecCCCcEEEEEEEEC---CCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCC
Confidence 4677888888752 12332 3345566678999974 3589999984 3456666654 23 5899999999
Q ss_pred CCcCccCChHHHHHhh-CCeEEecCCcCCCCC------C-ccEEccCCCEEEEC-CeEEEEEecCC-CCCCCEEEEeCCC
Q 020215 130 HHHDHTGGNLELKARY-GAKVIGSGVDKDRIP------G-IDIVLNDGDKWMFA-GHEVHVIDTPG-HTRGHISFYFPGS 199 (329)
Q Consensus 130 ~H~DH~gg~~~l~~~~-~~~v~~~~~~~~~~~------~-~~~~~~~g~~~~~g-~~~v~~~~~pg-Ht~g~~~~~~~~~ 199 (329)
.|+||+||+..|.+.+ +++|++++.+...+. . ....+++|+.+++| +.+++++++|+ |+||++++|+++.
T Consensus 80 ~H~DH~Ggl~~Ll~~~p~a~V~~s~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~~~ 159 (479)
T PRK05452 80 AEEDHAGALTELMAQIPDTPIYCTANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGD 159 (479)
T ss_pred CCcchhchHHHHHHHCCCCEEEECHHHHHHHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEcCC
Confidence 9999999999998876 899999876543221 1 23567899999999 47999999996 9999999999999
Q ss_pred cEEEECCccccCcCCC-CCCCC---------------------HHHHHHHHHHHhC--CCCCeEEEeCCCccccChhhhc
Q 020215 200 AAVFTGDTLFSLSCGK-LFEGT---------------------PGQMFSSLQKIMS--LPDDTNVYCGHEYTLSNSKFAL 255 (329)
Q Consensus 200 ~~lftGD~l~~~~~~~-~~~~~---------------------~~~~~~sl~~l~~--l~~~~~v~pgHg~~~~~~~~~~ 255 (329)
++|||||++....+.. ++... ...+.+.|+++++ |+.+ .|+||||+..++.
T Consensus 160 ~vLFsgD~fG~~~~~~~~f~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~~~~~l~l~~~-~i~p~HG~i~r~~---- 234 (479)
T PRK05452 160 AVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVD-MIATSHGVVWRDN---- 234 (479)
T ss_pred CEEEecccccCCCCchhhhcccCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCC-EEECCCCceEeCC----
Confidence 9999999876544332 22211 1235677888884 5777 4999999876542
Q ss_pred ccCCChHHHHHHHHHHHH
Q 020215 256 SIEPNNEALQSYAAHIAQ 273 (329)
Q Consensus 256 ~~~~~~~~l~~~~~~~~~ 273 (329)
..+.++.|.++...
T Consensus 235 ----~~~~l~~Y~~~~~~ 248 (479)
T PRK05452 235 ----PTQIVELYLKWAAD 248 (479)
T ss_pred ----HHHHHHHHHHHhhc
Confidence 12445555555543
No 10
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=175.15 Aligned_cols=162 Identities=38% Similarity=0.542 Sum_probs=124.1
Q ss_pred ecceEEEEEEECCCCeEEEEcCCC----cHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhhC-CeEEecCCcCC-
Q 020215 84 LRDNYAYLLHDMDTGTVGVVDPSE----AVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYG-AKVIGSGVDKD- 157 (329)
Q Consensus 84 ~~~n~~yli~~~~~g~~vliD~g~----~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~-~~v~~~~~~~~- 157 (329)
+..++++++.+. .+..++||+|. ...+.+.+.+.+.+|++|++||.|+||+||+..+.+... ++++.++....
T Consensus 22 ~~~~~~~~~~~~-~~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~ 100 (252)
T COG0491 22 LSGNSVYLLVDG-EGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPLL 100 (252)
T ss_pred cccccEEEEEcC-CCceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchhhhh
Confidence 444556676653 24689999993 345777788888899999999999999999999998775 78844443111
Q ss_pred ----------------CCC--CccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeCCCcEEEECCccccCc--CCCC-
Q 020215 158 ----------------RIP--GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLS--CGKL- 216 (329)
Q Consensus 158 ----------------~~~--~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~~~~~lftGD~l~~~~--~~~~- 216 (329)
..+ .....+.+++.+.+++..+++++|||||+||+++++++.++||+||+++... .+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~~~~l~~gD~~~~~~~~~~~~~ 180 (252)
T COG0491 101 LREEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLEDGGVLFTGDTLFAGDTGVGRLD 180 (252)
T ss_pred hhcccccccccccccCCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECCccEEEecceeccCCCCCcccc
Confidence 011 1233556899999999999999999999999999999878999999998874 2332
Q ss_pred -CCCCHHHHHHHHHHHhCCCCC-eEEEeCCCc
Q 020215 217 -FEGTPGQMFSSLQKIMSLPDD-TNVYCGHEY 246 (329)
Q Consensus 217 -~~~~~~~~~~sl~~l~~l~~~-~~v~pgHg~ 246 (329)
...++..+.++++++..+..+ ..++||||+
T Consensus 181 ~~~~~~~~~~~s~~~~~~~~~~~~~v~pgHg~ 212 (252)
T COG0491 181 LPGGDAAQLLASLRRLLLLLLPDTLVLPGHGP 212 (252)
T ss_pred CCCCCHHHHHHHHHHHHhccCCCCEEECCCCc
Confidence 233488999999998886553 469999997
No 11
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.85 E-value=4.9e-20 Score=157.18 Aligned_cols=155 Identities=32% Similarity=0.476 Sum_probs=124.5
Q ss_pred eEEEEEEECCCCeEEEEcCCCc--HHHHHHHHhcC-CCccEEecCCCCcCccCChHHHHHhhCCeEEecCCcCCCCC---
Q 020215 87 NYAYLLHDMDTGTVGVVDPSEA--VPVIDALSRKN-RNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRIP--- 160 (329)
Q Consensus 87 n~~yli~~~~~g~~vliD~g~~--~~~~~~l~~~g-~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~--- 160 (329)
+|+|+|... +..+|||+|.. ...++.+++.+ .++++|++||.|.||++|+..+.+..++++|+++...+.+.
T Consensus 6 ~~~~li~~~--~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (183)
T smart00849 6 VNSYLVEGD--GGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEAPGAPVYAPEGTAELLKDLL 83 (183)
T ss_pred eeEEEEEeC--CceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhCCCCcEEEchhhhHHHhccc
Confidence 459999874 56899999932 24555566655 68999999999999999999998888899998887654332
Q ss_pred -------------CccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeCCCcEEEECCccccCcC-CC---CCCCCHHH
Q 020215 161 -------------GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSC-GK---LFEGTPGQ 223 (329)
Q Consensus 161 -------------~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~~~~~lftGD~l~~~~~-~~---~~~~~~~~ 223 (329)
.....+.+++.+.+++.+++++++|||+++++++++++.+++|+||+.+.... .. ....+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~vl~~gD~~~~~~~~~~~~~~~~~~~~~ 163 (183)
T smart00849 84 KLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLPEGKILFTGDLLFSGGIGRTDDDGGDASASD 163 (183)
T ss_pred hhccccCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEECCCCEEEECCeeeccCCCCcccCCCCccHHH
Confidence 12345788999999999999999999999999999998999999999987662 22 23456788
Q ss_pred HHHHHHHHhCCCCCeEEEeCC
Q 020215 224 MFSSLQKIMSLPDDTNVYCGH 244 (329)
Q Consensus 224 ~~~sl~~l~~l~~~~~v~pgH 244 (329)
+.+.++++......+ ++|||
T Consensus 164 ~~~~~~~~~~~~~~~-i~~~H 183 (183)
T smart00849 164 SLESLLKLLALDPEL-VVPGH 183 (183)
T ss_pred HHHHHHHhhcCCccE-eecCC
Confidence 899999988888775 89998
No 12
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.84 E-value=7.5e-20 Score=170.59 Aligned_cols=206 Identities=20% Similarity=0.284 Sum_probs=151.2
Q ss_pred eeeeeceeeeecCCC----cceE-EEeceecceEEEEEEECCCCeEEEEcCCC---cHHHHHHHHhc--CCCccEEecCC
Q 020215 60 SLRVAEFCSISNMSS----SLQI-ELVPCLRDNYAYLLHDMDTGTVGVVDPSE---AVPVIDALSRK--NRNLTYILNTH 129 (329)
Q Consensus 60 ~~~v~~g~~~~~~~~----~~~i-~~~~~~~~n~~yli~~~~~g~~vliD~g~---~~~~~~~l~~~--g~~i~~ii~TH 129 (329)
..+++++++|++.-. .+.+ ...+.+.+.|+|||.+ ++.+||||+. ...+++.|++. .++|||||++|
T Consensus 4 ~~~i~~~i~~~~~~dw~~~~f~~~~~~~~GttyNSYLI~~---~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H 80 (388)
T COG0426 4 VLKIADNIYWVGVRDWDRRRFEIEYETPRGTTYNSYLIVG---DKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNH 80 (388)
T ss_pred cccccCceEEecccchhheeeeeeeccCCCceeeeEEEeC---CcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECC
Confidence 356677777776531 1222 2234455667999973 4689999984 34566666662 26799999999
Q ss_pred CCcCccCChHHHHHhh-CCeEEecCCcCCCCCC------ccEEccCCCEEEECCeEEEEEecC-CCCCCCEEEEeCCCcE
Q 020215 130 HHHDHTGGNLELKARY-GAKVIGSGVDKDRIPG------IDIVLNDGDKWMFAGHEVHVIDTP-GHTRGHISFYFPGSAA 201 (329)
Q Consensus 130 ~H~DH~gg~~~l~~~~-~~~v~~~~~~~~~~~~------~~~~~~~g~~~~~g~~~v~~~~~p-gHt~g~~~~~~~~~~~ 201 (329)
..+||+|+++.+.+.+ +++|+++....+.++. ....++.|+++++||.+++++.+| -|+||+++.|.+..++
T Consensus 81 ~ePDhsg~l~~ll~~~p~a~ii~s~~~~~~L~~~~~~~~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd~~~kI 160 (388)
T COG0426 81 TEPDHSGSLPELLELAPNAKIICSKLAARFLKGFYHDPEWFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYDPEDKI 160 (388)
T ss_pred CCcchhhhHHHHHHhCCCCEEEeeHHHHHHHHHhcCCccceeecCCCCEeccCCcEEEEEeCCCCCCCCceeEeecCCcE
Confidence 9999999999999776 9999999876655422 146789999999999999999997 6999999999999999
Q ss_pred EEECCccccCcCCC-CCCCCHHH-------------------HHHHHHHHhCCCCCeEEEeCCCccccChhhhcccCCCh
Q 020215 202 VFTGDTLFSLSCGK-LFEGTPGQ-------------------MFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNN 261 (329)
Q Consensus 202 lftGD~l~~~~~~~-~~~~~~~~-------------------~~~sl~~l~~l~~~~~v~pgHg~~~~~~~~~~~~~~~~ 261 (329)
|||+|++....+.. .++.+.+. ....++++..++.+ .|+||||+...+. -.
T Consensus 161 LFS~D~fG~h~~~~~~fded~~~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~-~IaP~HG~i~~~~--------~~ 231 (388)
T COG0426 161 LFSCDAFGAHVCDDYRFDEDIEELLPDMRKYYANLMAPNARLVLWALKKIKLLKIE-MIAPSHGPIWRGN--------PK 231 (388)
T ss_pred EEccccccccccchhccccCHHHHHHHHHHHHHHhhcccHHHHHHHHhhhcccCcc-EEEcCCCceeeCC--------HH
Confidence 99999997776663 45555422 23345556666666 5999999988752 13
Q ss_pred HHHHHHHHHHHHHHhC
Q 020215 262 EALQSYAAHIAQLRSK 277 (329)
Q Consensus 262 ~~l~~~~~~~~~~~~~ 277 (329)
+.++.|++|.+....+
T Consensus 232 ~i~~~Y~~W~~~~~~~ 247 (388)
T COG0426 232 EIVEAYRDWAEGQPKG 247 (388)
T ss_pred HHHHHHHHHHccCCcc
Confidence 5667777777665443
No 13
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.81 E-value=1.9e-19 Score=153.55 Aligned_cols=155 Identities=24% Similarity=0.341 Sum_probs=114.6
Q ss_pred eEEEEEEECCCCeEEEEcCCCcHHHHHH-----HHhcCCCccEEecCCCCcCccCChHHHHHhhCCeEEecCCcCCCC--
Q 020215 87 NYAYLLHDMDTGTVGVVDPSEAVPVIDA-----LSRKNRNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRI-- 159 (329)
Q Consensus 87 n~~yli~~~~~g~~vliD~g~~~~~~~~-----l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~-- 159 (329)
.|+|+|.. +++.+|||||........ ....+.+|++||+||.|.||+||+..|.+.....++.........
T Consensus 6 ~n~~li~~--~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~~~~ 83 (194)
T PF00753_consen 6 SNSYLIEG--GDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAAKAIR 83 (194)
T ss_dssp EEEEEEEE--TTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHHHHHH
T ss_pred EEEEEEEE--CCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeecccccccccc
Confidence 46999987 467999999954433222 233557999999999999999999999998765554443221110
Q ss_pred ---------------CCccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeCCCcEEEECCccccCcCCCCC-------
Q 020215 160 ---------------PGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLF------- 217 (329)
Q Consensus 160 ---------------~~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~~~~~lftGD~l~~~~~~~~~------- 217 (329)
...............++..+.+...++|++++++++.++.++||+||+++........
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~ 163 (194)
T PF00753_consen 84 PPDRDSASRRGPAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYLPGGKVLFTGDLLFSNEHPNPDPDLPLRG 163 (194)
T ss_dssp HHHHHHHHHHHHHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEETTTTEEEEETTSCTTTSSSSSTSHTTTT
T ss_pred ccccccccccccccccccceeeecccccccccccccceeccccCCcceEEEeCCCcEEEeeeEeccCCcccccccccccc
Confidence 0011223445555667778888889999999999999999999999999876544432
Q ss_pred -----CCCHHHHHHHHHHHhCCCCCeEEEeCC
Q 020215 218 -----EGTPGQMFSSLQKIMSLPDDTNVYCGH 244 (329)
Q Consensus 218 -----~~~~~~~~~sl~~l~~l~~~~~v~pgH 244 (329)
..+...+.++++++.++++++ ++|||
T Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~-ii~gH 194 (194)
T PF00753_consen 164 ADVRYGSNWEESIEALRRLEALDPEV-IIPGH 194 (194)
T ss_dssp HTTSHTTHHHHHHHHHHHHHTSTTSE-EEESS
T ss_pred ccccCcHHHHHHHHHHHHHHCCCCCE-EEeCc
Confidence 345688999999999999986 88899
No 14
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.77 E-value=1.7e-17 Score=137.82 Aligned_cols=152 Identities=23% Similarity=0.354 Sum_probs=103.7
Q ss_pred EEEEEEECCCCeEEEEcCCC-cHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhhCCeEEecCCcCCCCCC-ccEE
Q 020215 88 YAYLLHDMDTGTVGVVDPSE-AVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRIPG-IDIV 165 (329)
Q Consensus 88 ~~yli~~~~~g~~vliD~g~-~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~-~~~~ 165 (329)
|+|+...+ ++.++|||-. .....+.|.+.| .+++|++|| .||+..+..++++++++|++|..+++.++- .+..
T Consensus 24 ng~~~~~p--~GnilIDP~~ls~~~~~~l~a~g-gv~~IvLTn--~dHvR~A~~ya~~~~a~i~~p~~d~~~~p~~~D~~ 98 (199)
T PF14597_consen 24 NGHAWRRP--EGNILIDPPPLSAHDWKHLDALG-GVAWIVLTN--RDHVRAAEDYAEQTGAKIYGPAADAAQFPLACDRW 98 (199)
T ss_dssp EEEEE--T--T--EEES-----HHHHHHHHHTT---SEEE-SS--GGG-TTHHHHHHHS--EEEEEGGGCCC-SS--SEE
T ss_pred eeEEEEcC--CCCEEecCccccHHHHHHHHhcC-CceEEEEeC--ChhHhHHHHHHHHhCCeeeccHHHHhhCCCCCccc
Confidence 47777664 4579999973 445677888876 799999999 799999999999999999999999988764 5678
Q ss_pred ccCCCEEEECCeEEEEEecCC-CCCCCEEEEeCCCcEEEECCccccCcCCC---CC---CCCHHHHHHHHHHHhCC-CCC
Q 020215 166 LNDGDKWMFAGHEVHVIDTPG-HTRGHISFYFPGSAAVFTGDTLFSLSCGK---LF---EGTPGQMFSSLQKIMSL-PDD 237 (329)
Q Consensus 166 ~~~g~~~~~g~~~v~~~~~pg-Ht~g~~~~~~~~~~~lftGD~l~~~~~~~---~~---~~~~~~~~~sl~~l~~l-~~~ 237 (329)
+.+|+. .++| +++++.|| ||||.+++++++ ++|||||++.....+. ++ -.|+.++.+|++||.++ +.+
T Consensus 99 l~dge~-i~~g--~~vi~l~G~ktpGE~ALlled-~vLi~GDl~~~~~~g~l~lLpd~k~~d~~~a~~sl~RLa~~~~fe 174 (199)
T PF14597_consen 99 LADGEE-IVPG--LWVIHLPGSKTPGELALLLED-RVLITGDLLRSHPAGSLSLLPDEKLYDPTEARASLRRLAAYPDFE 174 (199)
T ss_dssp E-TT-B-SSTT--EEEEEE-SSSSTTEEEEEETT-TEEEESSSEEBSSTTS-EE--GGG-S-HHHHHHHHHHHHT-TT--
T ss_pred cccCCC-ccCc--eEEEEcCCCCCCceeEEEecc-ceEEecceeeecCCCCeEECChHHcCCHHHHHHHHHHHhcccccc
Confidence 999984 3466 88999999 999999999986 6999999886644333 33 35889999999999999 477
Q ss_pred eEEEeCCCcccc
Q 020215 238 TNVYCGHEYTLS 249 (329)
Q Consensus 238 ~~v~pgHg~~~~ 249 (329)
.|++|||.++-
T Consensus 175 -~lLvGdGwpi~ 185 (199)
T PF14597_consen 175 -WLLVGDGWPIF 185 (199)
T ss_dssp -EEEESBB--B-
T ss_pred -EEeecCCchhh
Confidence 59999998764
No 15
>PRK11539 ComEC family competence protein; Provisional
Probab=99.72 E-value=2.9e-16 Score=162.06 Aligned_cols=168 Identities=15% Similarity=0.143 Sum_probs=122.4
Q ss_pred CcceEEEeceecceEEEEEEECCCCeEEEEcCCC--------cHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhh
Q 020215 74 SSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSE--------AVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY 145 (329)
Q Consensus 74 ~~~~i~~~~~~~~n~~yli~~~~~g~~vliD~g~--------~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~ 145 (329)
...++..++++++. +.+|.+ ++++++||+|. .+.++++|++.|.++|++++||.|.||+||+..+.+++
T Consensus 499 ~~~~v~~lDVGqG~-a~li~~--~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~ 575 (755)
T PRK11539 499 YEWRVDMLDVGHGL-AVVIER--NGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAW 575 (755)
T ss_pred CcEEEEEEEccCce-EEEEEE--CCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhC
Confidence 44566677777766 777765 56799999984 25688999999988999999999999999999999887
Q ss_pred C-CeEEecCCcCCCCCCccEEccCCCEEEECCeEEEEEecCCC-----CCCCEEEEeC--CCcEEEECCccccCcCCCCC
Q 020215 146 G-AKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGH-----TRGHISFYFP--GSAAVFTGDTLFSLSCGKLF 217 (329)
Q Consensus 146 ~-~~v~~~~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~~pgH-----t~g~~~~~~~--~~~~lftGD~l~~~~~~~~~ 217 (329)
. .+++.+..... ......|+.+++++.++++++.++| +++|+++.++ +.++|||||+-.
T Consensus 576 ~~~~i~~~~~~~~-----~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi~~-------- 642 (755)
T PRK11539 576 PMAWIRSPLNWAN-----HLPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDLEA-------- 642 (755)
T ss_pred CcceeeccCcccC-----cccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCCCh--------
Confidence 4 57776543221 1235789999999999999998764 3668888774 678999999632
Q ss_pred CCCHHHHHHHHHHH-hCCCCCeEEEeCCCcccc-ChhhhcccCCCh
Q 020215 218 EGTPGQMFSSLQKI-MSLPDDTNVYCGHEYTLS-NSKFALSIEPNN 261 (329)
Q Consensus 218 ~~~~~~~~~sl~~l-~~l~~~~~v~pgHg~~~~-~~~~~~~~~~~~ 261 (329)
+.-.+-+++. ..++.|++.+|+||+..+ ..+|.++++|..
T Consensus 643 ----~~E~~Ll~~~~~~l~~dvL~vpHHGS~tSss~~fl~~v~P~~ 684 (755)
T PRK11539 643 ----QAEQKLLSRYWQQLAATLLQVPHHGSNTSSSLPFIRAVNGKV 684 (755)
T ss_pred ----HHHHHHHhcCccCcCCCEEEeCCCCCCCCChHHHHHhcCCCE
Confidence 1111222332 246788899999998654 456666666543
No 16
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.72 E-value=5.1e-16 Score=141.68 Aligned_cols=190 Identities=18% Similarity=0.162 Sum_probs=137.7
Q ss_pred Ccceeeeeceee-eecCCCc-ceEEEeceecceEEEEEEECCCCeEEEEcCCC---cHHHHHHHHhcCC-CccEEecCCC
Q 020215 57 ASRSLRVAEFCS-ISNMSSS-LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSE---AVPVIDALSRKNR-NLTYILNTHH 130 (329)
Q Consensus 57 ~g~~~~v~~g~~-~~~~~~~-~~i~~~~~~~~n~~yli~~~~~g~~vliD~g~---~~~~~~~l~~~g~-~i~~ii~TH~ 130 (329)
...++.+.++.. +...+.. .++..++++++. +.++..+ +..+++|+|. ...++++|++.|. +||++|+||.
T Consensus 23 ~~~~i~~~~~~~~~~~~~~~~~~~~~lDvGqg~-a~li~~~--~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~ 99 (293)
T COG2333 23 KITVIDVGQGDSILIQAPSNGWKVHMLDVGQGL-ATLIRSE--GKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHP 99 (293)
T ss_pred chheecccccceeeccccCCCceEEEEEcCCCe-EEEEeeC--CceEEeecCcccCceeehhhHhHcCCccccEEEeccC
Confidence 556788888843 4444444 488888888876 7777663 4589999985 4468999999995 6999999999
Q ss_pred CcCccCChHHHHHhhCC-eEEecCCcCCCC-------CCccEEccCCCEEEECCeEEEEEecCCC-----CCCCEEEEeC
Q 020215 131 HHDHTGGNLELKARYGA-KVIGSGVDKDRI-------PGIDIVLNDGDKWMFAGHEVHVIDTPGH-----TRGHISFYFP 197 (329)
Q Consensus 131 H~DH~gg~~~l~~~~~~-~v~~~~~~~~~~-------~~~~~~~~~g~~~~~g~~~v~~~~~pgH-----t~g~~~~~~~ 197 (329)
|.||+||+.++.+.+.+ ++++........ .......+.|+.|.+++..++++..++. +..|+++++.
T Consensus 100 d~DHiGg~~~vl~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~ 179 (293)
T COG2333 100 DADHIGGLDEVLKTIKVPELWIYAGSDSTSTFVLRDAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVT 179 (293)
T ss_pred CccccCCHHHHHhhCCCCcEEEeCCCCccchhhhhhcCCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEE
Confidence 99999999999997755 455555443321 2344567889999999999999987643 5668888884
Q ss_pred --CCcEEEECCccccCcCCCCCCCCHHHHHHHHHHHhCCCCCeEEEeCCCcccc-ChhhhcccCCCh
Q 020215 198 --GSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLS-NSKFALSIEPNN 261 (329)
Q Consensus 198 --~~~~lftGD~l~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~~v~pgHg~~~~-~~~~~~~~~~~~ 261 (329)
+.++|||||+--. .+ ..-++.-..|..+++.+++||...+ ..+|...+.|..
T Consensus 180 ~g~~s~LlTGD~e~~-----------~E-~~l~~~~~~l~~dVLkV~HHGS~tSss~~Fl~~v~Pk~ 234 (293)
T COG2333 180 FGGNSFLLTGDLEEK-----------GE-KLLKKYGPDLRADVLKVGHHGSKTSSSLAFLEAVKPKV 234 (293)
T ss_pred eCCeeEEEecCCCch-----------hH-HHHHhhCCCccceEEEeccCCccccCcHHHHHhcCCcE
Confidence 6789999998532 12 2223444456778889999998654 556665555433
No 17
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.69 E-value=1.1e-15 Score=156.00 Aligned_cols=168 Identities=17% Similarity=0.211 Sum_probs=120.9
Q ss_pred cceEEEeceecceEEEEEEECCCCeEEEEcCCCc--------HHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhhC
Q 020215 75 SLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEA--------VPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYG 146 (329)
Q Consensus 75 ~~~i~~~~~~~~n~~yli~~~~~g~~vliD~g~~--------~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~ 146 (329)
..++..+++++++ +.+|..+ +++++||+|+. ..+.++|++.|.+||++++||.|.||+||+..+.+++.
T Consensus 439 ~~~v~~lDVGqGd-aili~~~--~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~ 515 (662)
T TIGR00361 439 SWQVDMLDVGQGL-AMFIGAN--GKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHP 515 (662)
T ss_pred CEEEEEEecCCce-EEEEEEC--CeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCC
Confidence 4677778877777 8888763 47899999842 45889999999779999999999999999999999886
Q ss_pred C-eEEecCCcCCCCCCccEEccCCCEEEECCeEEEEEecC-----CCCCCCEEEEeC--CCcEEEECCccccCcCCCCCC
Q 020215 147 A-KVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTP-----GHTRGHISFYFP--GSAAVFTGDTLFSLSCGKLFE 218 (329)
Q Consensus 147 ~-~v~~~~~~~~~~~~~~~~~~~g~~~~~g~~~v~~~~~p-----gHt~g~~~~~~~--~~~~lftGD~l~~~~~~~~~~ 218 (329)
+ +++.++.... -......+..|+.+++++.++++++.+ ..+++|+++.++ +.++|||||+-.
T Consensus 516 v~~i~~~~~~~~-~~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~~~--------- 585 (662)
T TIGR00361 516 VKRLVIPKGFVE-EGVAIEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDLEA--------- 585 (662)
T ss_pred ccEEEeccchhh-CCCceEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeEEEecCCCH---------
Confidence 6 6766543211 112344678999999999999999853 224567777764 678999999842
Q ss_pred CCHHHHHHHHHHHhCCCCCeEEEeCCCcccc-ChhhhcccC
Q 020215 219 GTPGQMFSSLQKIMSLPDDTNVYCGHEYTLS-NSKFALSIE 258 (329)
Q Consensus 219 ~~~~~~~~sl~~l~~l~~~~~v~pgHg~~~~-~~~~~~~~~ 258 (329)
+.|+. -++....++.+++.+|+||+..+ ..+|.+++.
T Consensus 586 -~~E~~--l~~~~~~l~~dvLk~~HHGS~~Sss~~fl~~v~ 623 (662)
T TIGR00361 586 -EGEQE--VMRVFPNIKADVLQVGHHGSKTSTSEELIQQVQ 623 (662)
T ss_pred -HHHHH--HHhcccCcCccEEEeCCCCCCCCChHHHHHhcC
Confidence 11221 12333456778889999998654 345544443
No 18
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.62 E-value=5.5e-15 Score=143.46 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=96.2
Q ss_pred eEEEEEEECCCCeEEEEcCCCc---HHH---------HHHHHhcCCCccEEecCCCCcCccCChHHHHHhhC-CeEEecC
Q 020215 87 NYAYLLHDMDTGTVGVVDPSEA---VPV---------IDALSRKNRNLTYILNTHHHHDHTGGNLELKARYG-AKVIGSG 153 (329)
Q Consensus 87 n~~yli~~~~~g~~vliD~g~~---~~~---------~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~-~~v~~~~ 153 (329)
.|||++.. ++..++||+|.. ..+ .+++++...++++|++||.|.||+||++.+.+.++ ++||+++
T Consensus 14 ~n~~ll~~--~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy~~~ 91 (422)
T TIGR00649 14 KNMYVVEI--DDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPPIYGTP 91 (422)
T ss_pred CeEEEEEE--CCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCeEEeCH
Confidence 35999976 457899999932 111 34566656789999999999999999999988775 6899987
Q ss_pred CcCCCC-----------CCccEEccCCCEEEEC-CeEEEEEecCCCCCCCEEEEe--CCCcEEEECCccccC
Q 020215 154 VDKDRI-----------PGIDIVLNDGDKWMFA-GHEVHVIDTPGHTRGHISFYF--PGSAAVFTGDTLFSL 211 (329)
Q Consensus 154 ~~~~~~-----------~~~~~~~~~g~~~~~g-~~~v~~~~~pgHt~g~~~~~~--~~~~~lftGD~l~~~ 211 (329)
.+.+.+ ......+..++.+++| +.+++++++++|.||+++|++ ++.+++||||+.+..
T Consensus 92 ~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~~~ivytGD~~~~~ 163 (422)
T TIGR00649 92 LTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPLGYIVYTGDFKFDN 163 (422)
T ss_pred HHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCCcEEEECCCcCCCC
Confidence 654322 1123567889999996 599999999888999999988 466899999997754
No 19
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.45 E-value=2.2e-13 Score=128.08 Aligned_cols=222 Identities=17% Similarity=0.192 Sum_probs=152.7
Q ss_pred eeeeeceeeeecCCCcceEEEeceecceEEEEEEECCCCeEEEEcCC----CcHHHHHHHH-hcC-CCccEEecCCCCcC
Q 020215 60 SLRVAEFCSISNMSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPS----EAVPVIDALS-RKN-RNLTYILNTHHHHD 133 (329)
Q Consensus 60 ~~~v~~g~~~~~~~~~~~i~~~~~~~~n~~yli~~~~~g~~vliD~g----~~~~~~~~l~-~~g-~~i~~ii~TH~H~D 133 (329)
.++|.+++|.++. +.-.|..+|.+ |+ +.++|||- .++..++... +.| ++|.+||.||.|.|
T Consensus 110 LfkVtd~iYQVRG-----------~DisNITfveG-dt-g~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~D 176 (655)
T COG2015 110 LFKVTDGIYQVRG-----------FDISNITFVEG-DT-GWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSD 176 (655)
T ss_pred eeeeccceeEeec-----------ccccceEEEcC-Cc-ceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeeccccc
Confidence 5678888888776 33335667765 35 48999986 2333344433 355 68999999999999
Q ss_pred ccCChHHHHHhh-----CCeEEecCCcCCCC-----------------------C-----------------------Cc
Q 020215 134 HTGGNLELKARY-----GAKVIGSGVDKDRI-----------------------P-----------------------GI 162 (329)
Q Consensus 134 H~gg~~~l~~~~-----~~~v~~~~~~~~~~-----------------------~-----------------------~~ 162 (329)
|.||..-+.+.. .++|+++..-.+.. + .+
T Consensus 177 HfGGVkGiv~eadV~sGkV~iiAP~GFme~avaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~~giGk~la~G~vsLiaP 256 (655)
T COG2015 177 HFGGVKGIVSEADVKSGKVQIIAPAGFMEEAVAENVLAGNAMSRRAQYQYGTLLPPGAQGQVGCGIGKTLATGEVSLIAP 256 (655)
T ss_pred ccCCeeeccCHHHcccCceeEecchhHHHHHHHHhhhhhhhHhhhhhhhhccccCCCccCccccccccccccCceeeecc
Confidence 999998876553 46888886522210 0 12
Q ss_pred cE-EccCCCEEEECCeEEEEEecCC-CCCCCEEEEeCCCcEEEECCccccCcCCC--C---CCCCHHHHHHHHHH-HhCC
Q 020215 163 DI-VLNDGDKWMFAGHEVHVIDTPG-HTRGHISFYFPGSAAVFTGDTLFSLSCGK--L---FEGTPGQMFSSLQK-IMSL 234 (329)
Q Consensus 163 ~~-~~~~g~~~~~g~~~v~~~~~pg-Ht~g~~~~~~~~~~~lftGD~l~~~~~~~--~---~~~~~~~~~~sl~~-l~~l 234 (329)
++ ....|+++.++|+++++..||| .+|..+-+|+|..++|.+..-.-..-... + .-.|...|-+-|.. +..+
T Consensus 257 T~~I~~~gE~~~iDGV~~~Fq~tPgtEaPAEM~~y~P~~kaL~mAEnat~~lHNlytlRGa~vRD~~~Ws~ylneal~~f 336 (655)
T COG2015 257 TKIIEETGETLTIDGVEFEFQMTPGTEAPAEMHFYFPRLKALCMAENATHTLHNLYTLRGAEVRDAKAWSKYLNEALDMF 336 (655)
T ss_pred eEEeeccCceEEEeceEEEEeeCCCCCCcHHHhhhhhHHHHHHHHhhccccceeeeecccceecchHHHHHHHHHHHHHh
Confidence 22 3467999999999999999998 58899999999888877665442221111 1 23478888888854 3333
Q ss_pred --CCCeEEEeCCCccccChhhhcccCCChHHHHHHHHHHHHHHhCCCCCCCCcHHhHHhcCCcc
Q 020215 235 --PDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFL 296 (329)
Q Consensus 235 --~~~~~v~pgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~e~~~np~l 296 (329)
+.++++.++|-|...+......+...|+.+..+.++..++.+.|.+ -..|.+..+..|-|
T Consensus 337 g~~adVmfa~H~WP~wG~~~I~e~L~kqRDmy~yiHDQTLrL~NqG~T--~~eI~~~~~lPpaL 398 (655)
T COG2015 337 GDDADVMFASHTWPRWGNAHINEFLGKQRDMYKYIHDQTLRLANQGYT--GNEIADMIQLPPAL 398 (655)
T ss_pred cccccEEEeecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--HHHHHHHhcCChHH
Confidence 4566555666666667777777888999999999999999999998 34444444444433
No 20
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.32 E-value=1.1e-11 Score=110.23 Aligned_cols=156 Identities=25% Similarity=0.317 Sum_probs=99.3
Q ss_pred ecceEEEEEEECCCCeEEEEcCCCc-HHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhhCCeEEecCCcCCCCCC-
Q 020215 84 LRDNYAYLLHDMDTGTVGVVDPSEA-VPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRIPG- 161 (329)
Q Consensus 84 ~~~n~~yli~~~~~g~~vliD~g~~-~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~- 161 (329)
+++. +|+|.. ++..++|||+.. .... .+.....++|+|++||.|.||+++...+..+.+++++++....+.+..
T Consensus 6 lG~s-~~li~~--~~~~iLiDP~~~~~~~~-~~~~~~~~id~vliTH~H~DH~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 81 (228)
T PRK00685 6 LGHS-AFLIET--GGKKILIDPFITGNPLA-DLKPEDVKVDYILLTHGHGDHLGDTVEIAKRTGATVIANAELANYLSEK 81 (228)
T ss_pred Ecce-EEEEEE--CCEEEEECCCCCCCCCC-CCChhcCcccEEEeCCCCccccccHHHHHHhCCCEEEEeHHHHHHHHhc
Confidence 3444 999976 567999998521 1110 111122489999999999999999888776668899988754433311
Q ss_pred ---ccEEccCCCEEEECCeEEEEEecCCCCCC------------CEEEEe--CCCcEEEECCccccCcC-------CC--
Q 020215 162 ---IDIVLNDGDKWMFAGHEVHVIDTPGHTRG------------HISFYF--PGSAAVFTGDTLFSLSC-------GK-- 215 (329)
Q Consensus 162 ---~~~~~~~g~~~~~g~~~v~~~~~pgHt~g------------~~~~~~--~~~~~lftGD~l~~~~~-------~~-- 215 (329)
....+..|+.+++++.+++++.+ -|... ..+|.+ ++.+++|+||+-+.... ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~~~p~-~H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~~~~~~~~~~~~~D~ 160 (228)
T PRK00685 82 GVEKTHPMNIGGTVEFDGGKVKLTPA-LHSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGLFSDMKLIGELHKPDV 160 (228)
T ss_pred CCCceeeccCCCcEEECCEEEEEEEE-EcCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccchhHHHHHHHhhCCCE
Confidence 23467788999999988887654 23221 366666 46789999998653210 00
Q ss_pred --CC-----CCCHHHHHHHHHHHhCCCCCeEEEeCCCccc
Q 020215 216 --LF-----EGTPGQMFSSLQKIMSLPDDTNVYCGHEYTL 248 (329)
Q Consensus 216 --~~-----~~~~~~~~~sl~~l~~l~~~~~v~pgHg~~~ 248 (329)
++ .-++++ .++....+.++ .++|.|-...
T Consensus 161 ~~~~~~~~~h~~~~e---a~~~~~~~~~k-~~v~~H~~~~ 196 (228)
T PRK00685 161 ALLPIGDNFTMGPED---AALAVELIKPK-IVIPMHYNTF 196 (228)
T ss_pred EEEecCCccccCHHH---HHHHHHhhCCC-EEEEeccCCC
Confidence 11 122333 34445556677 4889998543
No 21
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.32 E-value=3.7e-12 Score=128.45 Aligned_cols=132 Identities=22% Similarity=0.249 Sum_probs=90.3
Q ss_pred ceEEEeceecc--eEEEEEEECCCCeEEEEcCCCcH-----HHHHHHHhc---CCCccEEecCCCCcCccCChHHHHHh-
Q 020215 76 LQIELVPCLRD--NYAYLLHDMDTGTVGVVDPSEAV-----PVIDALSRK---NRNLTYILNTHHHHDHTGGNLELKAR- 144 (329)
Q Consensus 76 ~~i~~~~~~~~--n~~yli~~~~~g~~vliD~g~~~-----~~~~~l~~~---g~~i~~ii~TH~H~DH~gg~~~l~~~- 144 (329)
|++..++..+. .+||+|..+ +..+|||+|... ...+.+... ..+||+||+||+|.||+|+++.+.+.
T Consensus 175 m~i~~LGg~~eVG~Sc~Ll~~~--~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~g 252 (630)
T TIGR03675 175 VRVTALGGFREVGRSALLLSTP--ESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKYG 252 (630)
T ss_pred EEEEEEecCCccCCCEEEEEEC--CCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHhC
Confidence 55555554221 259999873 457999999321 122222222 24799999999999999999999864
Q ss_pred hCCeEEecCCcCCCC-----------------C-----------CccEEccCCCEEEE-CCeEEEEEecCCCCCCCEEEE
Q 020215 145 YGAKVIGSGVDKDRI-----------------P-----------GIDIVLNDGDKWMF-AGHEVHVIDTPGHTRGHISFY 195 (329)
Q Consensus 145 ~~~~v~~~~~~~~~~-----------------~-----------~~~~~~~~g~~~~~-g~~~v~~~~~pgHt~g~~~~~ 195 (329)
++.+||++..+.+.. + .....+..++.+++ ++.++++++. ||++|+.+++
T Consensus 253 ~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~A-GHilGsa~~~ 331 (630)
T TIGR03675 253 YDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNA-GHILGSAIAH 331 (630)
T ss_pred CCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecC-ccccCceEEE
Confidence 467999987543211 0 11345677888888 5777777754 9999998876
Q ss_pred eC--C--CcEEEECCcccc
Q 020215 196 FP--G--SAAVFTGDTLFS 210 (329)
Q Consensus 196 ~~--~--~~~lftGD~l~~ 210 (329)
+. + .+++||||+-+.
T Consensus 332 ~~i~dg~~~IvYTGD~~~~ 350 (630)
T TIGR03675 332 LHIGDGLYNIVYTGDFKYE 350 (630)
T ss_pred EEECCCCEEEEEeCCCCCC
Confidence 53 2 479999998653
No 22
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.29 E-value=2.4e-11 Score=119.81 Aligned_cols=122 Identities=19% Similarity=0.201 Sum_probs=96.2
Q ss_pred EEEEEEECCCCeEEEEcCC---C------cHH---HHHHHHhcCCCccEEecCCCCcCccCChHHHHHhhC-CeEEecCC
Q 020215 88 YAYLLHDMDTGTVGVVDPS---E------AVP---VIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYG-AKVIGSGV 154 (329)
Q Consensus 88 ~~yli~~~~~g~~vliD~g---~------~~~---~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~-~~v~~~~~ 154 (329)
|+|++.-. +..+++|+| + .+. -..+|.+...+|++||+||+|.||+|+++++..+.+ ++||+++.
T Consensus 23 N~~vve~~--~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~~piy~s~l 100 (555)
T COG0595 23 NMYVVEYG--DDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLFAPIYASPL 100 (555)
T ss_pred ceEEEEEC--CcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCcCceecCHh
Confidence 59999874 468999998 1 111 124466666799999999999999999999998876 99999886
Q ss_pred cCCCC----------C--CccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeC--CCcEEEECCccccC
Q 020215 155 DKDRI----------P--GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP--GSAAVFTGDTLFSL 211 (329)
Q Consensus 155 ~~~~~----------~--~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~--~~~~lftGD~l~~~ 211 (329)
+...+ . ...+.++.++.+++++.+++++.+..--|+++++.+. ...+++|||.-+..
T Consensus 101 t~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~Iv~TGDFk~d~ 171 (555)
T COG0595 101 TAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGNIVYTGDFKFDP 171 (555)
T ss_pred hHHHHHHHHHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEECCCccEEEeCCEEecC
Confidence 54332 1 2346788999999999999999997667999999984 56699999997654
No 23
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.25 E-value=8.8e-11 Score=106.14 Aligned_cols=116 Identities=21% Similarity=0.280 Sum_probs=82.7
Q ss_pred EEEEEEECCCCeEEEEcCCCcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHh--hCCeEEecCCcCC--CC---C
Q 020215 88 YAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKAR--YGAKVIGSGVDKD--RI---P 160 (329)
Q Consensus 88 ~~yli~~~~~g~~vliD~g~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~--~~---~ 160 (329)
.+|+|.. .+..+|||+|... +.+.+ ...+|++|++||.|.||++|+..+... ..++||++..... .+ +
T Consensus 38 ~s~li~~--~~~~iLiD~G~~~-~~~~~--~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~~~~~~ 112 (250)
T PRK11244 38 CSALIEF--NGARTLIDAGLPD-LAERF--PPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDDLFKHP 112 (250)
T ss_pred eEEEEEE--CCCEEEEECCChH-HhhcC--CcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHHHhcCc
Confidence 4788766 3457999999432 21111 225899999999999999999877533 2568888765321 11 1
Q ss_pred C---ccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeC--CCcEEEECCccc
Q 020215 161 G---IDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP--GSAAVFTGDTLF 209 (329)
Q Consensus 161 ~---~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~--~~~~lftGD~l~ 209 (329)
. ....+..++.+.+++.+++.+.+ .|+.++++|.++ +.+++|+||+..
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~I~~~~~-~H~~~s~g~~i~~~~~~i~ysgDt~~ 165 (250)
T PRK11244 113 GILDFSHPLEPFEPFDLGGLQVTPLPL-NHSKLTFGYLLETAHSRVAYLTDTVG 165 (250)
T ss_pred cccccccccCCCCCeeECCEEEEEEee-CCCcceeEEEEecCCeEEEEEcCCCC
Confidence 1 11246788999999999888877 688889999885 567999999853
No 24
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.22 E-value=2.4e-10 Score=101.03 Aligned_cols=153 Identities=20% Similarity=0.232 Sum_probs=99.0
Q ss_pred cceEEEEEEECCCCeEEEEcCC-CcHHHHHHHHhcC---CCccEEecCCCCcCccCChHHHHHhh--CCeEEecCCcCCC
Q 020215 85 RDNYAYLLHDMDTGTVGVVDPS-EAVPVIDALSRKN---RNLTYILNTHHHHDHTGGNLELKARY--GAKVIGSGVDKDR 158 (329)
Q Consensus 85 ~~n~~yli~~~~~g~~vliD~g-~~~~~~~~l~~~g---~~i~~ii~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~ 158 (329)
+.+.++||.+ .+..+|+|+| .+..++..++..| .+||++++||.|+||+||+.++.+.. +++||+|+.....
T Consensus 20 ~hGfS~LVE~--~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~~ 97 (259)
T COG1237 20 EHGFSALVED--EGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFKA 97 (259)
T ss_pred cCceEEEEEc--CCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHhh
Confidence 4456899976 4578999999 7778888888877 48999999999999999999997753 6799999875331
Q ss_pred C-CC-----cc--------EEccCCCEEEECCeEEEEEecCCCCC-------------------CCEEEEeCC--CcEEE
Q 020215 159 I-PG-----ID--------IVLNDGDKWMFAGHEVHVIDTPGHTR-------------------GHISFYFPG--SAAVF 203 (329)
Q Consensus 159 ~-~~-----~~--------~~~~~g~~~~~g~~~v~~~~~pgHt~-------------------g~~~~~~~~--~~~lf 203 (329)
. +. .. +...+.+.+.- + ++. .|-.| +.+++.++. .-++.
T Consensus 98 ~~~~~~~~gi~e~~~~~~~~~~~~~~~I~~-g----~~~-~Gei~~~~~e~~~~~~dg~~D~~~de~aLi~~~~~GlvvI 171 (259)
T COG1237 98 KIEVFREIGIPELEELARLILSEEPDEIVE-G----VIT-LGEIPKVTFEKGGYFEDGEPDPVLDEQALIVETEKGLVVI 171 (259)
T ss_pred hccccccccchhhhhccceeecCCCceeec-C----eEE-ecccCccccccccccccCCCCCcCCceEEEEecCCceEEE
Confidence 1 00 00 00011111100 0 111 12222 566777652 23888
Q ss_pred ECCcccc-----------Cc------CCC--CCCCCHHHHHHHHHHHhCCCCCeEEEeCCCc
Q 020215 204 TGDTLFS-----------LS------CGK--LFEGTPGQMFSSLQKIMSLPDDTNVYCGHEY 246 (329)
Q Consensus 204 tGD~l~~-----------~~------~~~--~~~~~~~~~~~sl~~l~~l~~~~~v~pgHg~ 246 (329)
||-.=.. .+ .+- +.....+...+.++.+.++..+. |+|+|-.
T Consensus 172 tGCsH~GI~niv~~~~~~~g~rv~~ViGGFHL~~~~~~~l~~~~~~l~el~v~~-i~pcHCT 232 (259)
T COG1237 172 TGCSHPGIVNIVEWAKERSGDRVKAVIGGFHLIGASEERLEEVADYLKELGVEK-IYPCHCT 232 (259)
T ss_pred EcCCcccHHHHHHHHHHhccceeEEEeeeeccCCCcHHHHHHHHHHHHhcCCCe-EEecCCC
Confidence 8864211 01 111 34455678888999999999884 9999985
No 25
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.22 E-value=1.2e-10 Score=104.51 Aligned_cols=115 Identities=19% Similarity=0.272 Sum_probs=81.5
Q ss_pred EEEEEEECCCCeEEEEcCCCcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhh--CCeEEecCCcCC---CC--C
Q 020215 88 YAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY--GAKVIGSGVDKD---RI--P 160 (329)
Q Consensus 88 ~~yli~~~~~g~~vliD~g~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~---~~--~ 160 (329)
.+++|.. .+..+|||+|... +.+.+ ...+|++|++||.|.||++|+..+.... +++||+++.... .+ +
T Consensus 28 ~s~~i~~--~~~~iliD~G~~~-~~~~~--~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 102 (238)
T TIGR03307 28 CSAVIEF--NGARTLIDAGLTD-LAERF--PPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDDLFKHP 102 (238)
T ss_pred eEEEEEE--CCcEEEEECCChh-Hhhcc--CccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHHHhcCc
Confidence 4777765 3468999999432 21111 2257999999999999999997765432 578898875321 01 1
Q ss_pred ---CccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeC--CCcEEEECCcc
Q 020215 161 ---GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP--GSAAVFTGDTL 208 (329)
Q Consensus 161 ---~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~--~~~~lftGD~l 208 (329)
.....+..++.+.+++.+++.+.+ .|+.++++|.++ +.+++|+||+-
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~H~~~~~g~~i~~~~~~i~y~gDt~ 154 (238)
T TIGR03307 103 GILDFSKPLEAFEPFDLGGLRVTPLPL-VHSKLTFGYLLETDGQRVAYLTDTA 154 (238)
T ss_pred ccccccccccCCceEEECCEEEEEEec-CCCCcceEEEEecCCcEEEEEecCC
Confidence 111236778899999988888876 688888999885 56899999984
No 26
>PRK04286 hypothetical protein; Provisional
Probab=99.21 E-value=9.7e-11 Score=108.52 Aligned_cols=120 Identities=16% Similarity=0.215 Sum_probs=75.2
Q ss_pred eEEEEEEECCCCeEEEEcCCCc---------------HHHHHHHHh---cCCCccEEecCCCCcCccCChHHH-----HH
Q 020215 87 NYAYLLHDMDTGTVGVVDPSEA---------------VPVIDALSR---KNRNLTYILNTHHHHDHTGGNLEL-----KA 143 (329)
Q Consensus 87 n~~yli~~~~~g~~vliD~g~~---------------~~~~~~l~~---~g~~i~~ii~TH~H~DH~gg~~~l-----~~ 143 (329)
+||++|.. ++..+|||+|.. ..+.+.+.. .-.+||+||+||.|.||+++...+ .+
T Consensus 15 ~~~~~I~~--~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~ 92 (298)
T PRK04286 15 SMATFVET--KDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELSDE 92 (298)
T ss_pred eeEEEEEE--CCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccccccc
Confidence 47999987 467899999932 223333333 235899999999999999987765 11
Q ss_pred hhCCeEEecCCcCCC-----C-----------------CCccEEccCCCEEEECCeEEEEEecCCCCCC--CEEE----E
Q 020215 144 RYGAKVIGSGVDKDR-----I-----------------PGIDIVLNDGDKWMFAGHEVHVIDTPGHTRG--HISF----Y 195 (329)
Q Consensus 144 ~~~~~v~~~~~~~~~-----~-----------------~~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g--~~~~----~ 195 (329)
.+.+++|........ + ......+..++.+.+|+.++++.....|... ...| .
T Consensus 93 ~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~i~~r 172 (298)
T PRK04286 93 EIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLGYVIMVR 172 (298)
T ss_pred cchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccceEEEEE
Confidence 112333333222110 0 0022456778999999998887754356432 3333 2
Q ss_pred e--CCCcEEEECCcc
Q 020215 196 F--PGSAAVFTGDTL 208 (329)
Q Consensus 196 ~--~~~~~lftGD~l 208 (329)
+ .+.+++|+||+-
T Consensus 173 i~~gg~~~~~~gDt~ 187 (298)
T PRK04286 173 ISDGDESFVFASDVQ 187 (298)
T ss_pred EEeCCEEEEEECCCC
Confidence 2 366899999996
No 27
>PRK02113 putative hydrolase; Provisional
Probab=99.19 E-value=1.2e-10 Score=105.26 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=81.6
Q ss_pred eEEEEEEECCCCeEEEEcCCCcHHHHHHHHhcC-CCccEEecCCCCcCccCChHHHHHh---hCCeEEecCCcCCCC---
Q 020215 87 NYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKN-RNLTYILNTHHHHDHTGGNLELKAR---YGAKVIGSGVDKDRI--- 159 (329)
Q Consensus 87 n~~yli~~~~~g~~vliD~g~~~~~~~~l~~~g-~~i~~ii~TH~H~DH~gg~~~l~~~---~~~~v~~~~~~~~~~--- 159 (329)
+.+|+|.. ++..+|||+|.... ..+.+.+ .++++|++||.|.||++|+..+... ..++||+++...+.+
T Consensus 35 ~~s~li~~--~~~~iLiD~G~g~~--~~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~ 110 (252)
T PRK02113 35 RTSALVET--EGARILIDCGPDFR--EQMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSR 110 (252)
T ss_pred eeEEEEEE--CCeEEEEECCchHH--HHHHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhh
Confidence 35888876 35689999996422 2232223 5899999999999999999877532 257888887533221
Q ss_pred ----------CC----ccEEccCCCEEEECCeEEEEEecCCCC-CCCEEEEeCCCcEEEECCccc
Q 020215 160 ----------PG----IDIVLNDGDKWMFAGHEVHVIDTPGHT-RGHISFYFPGSAAVFTGDTLF 209 (329)
Q Consensus 160 ----------~~----~~~~~~~g~~~~~g~~~v~~~~~pgHt-~g~~~~~~~~~~~lftGD~l~ 209 (329)
+. ....+..|+.+++++.+++.+.+. |+ ..+++|.+ .+++|+||+-.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~-H~~~~~~gy~i--~~i~y~~Dt~~ 172 (252)
T PRK02113 111 MPYCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVM-HGKLPILGYRI--GKMAYITDMLT 172 (252)
T ss_pred CCeeeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEec-CCCccEEEEEe--CCEEEccCCCC
Confidence 10 124567889999999999998774 54 34677777 47999999853
No 28
>PRK02126 ribonuclease Z; Provisional
Probab=99.13 E-value=7.7e-10 Score=103.91 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=52.1
Q ss_pred ecceEEEEEEECCCCeEEEEcCCCcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhh-----CCeEEecCCcC
Q 020215 84 LRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY-----GAKVIGSGVDK 156 (329)
Q Consensus 84 ~~~n~~yli~~~~~g~~vliD~g~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~-----~~~v~~~~~~~ 156 (329)
++.| +|+|....++..+|||+|. +.+.++....+|++|++||.|.||++|+..|...+ .++||+++...
T Consensus 14 ~~dn-~~~l~~~~~~~~iLiD~G~---~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~ 87 (334)
T PRK02126 14 FDDP-GLYVDFLFERRALLFDLGD---LHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFA 87 (334)
T ss_pred CCCc-EEEEEECCCCeEEEEcCCC---HHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHH
Confidence 4555 8888775567899999998 33333333368999999999999999999998764 46888877543
No 29
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.10 E-value=3.3e-10 Score=105.19 Aligned_cols=117 Identities=11% Similarity=0.142 Sum_probs=81.8
Q ss_pred EEEEEEECCCCeEEEEcCCCcHHHHHHHHhc-------C---CCccEEecCCCCcCccCChHHHHHhhCCeEEecCCcCC
Q 020215 88 YAYLLHDMDTGTVGVVDPSEAVPVIDALSRK-------N---RNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKD 157 (329)
Q Consensus 88 ~~yli~~~~~g~~vliD~g~~~~~~~~l~~~-------g---~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~ 157 (329)
.+|+|.+. ++..+|||+|... ...+.+. | .+|++||+||.|+||+.|+..|.....++||+++...+
T Consensus 40 ss~li~~~-g~~~iLiD~G~g~--~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~~~l~Vyg~~~~~~ 116 (302)
T PRK05184 40 SSIAVSAD-GEDWVLLNASPDI--RQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREGQPFPVYATPAVLE 116 (302)
T ss_pred cEEEEEcC-CCEEEEEECChhH--HHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccCCCeEEEeCHHHHH
Confidence 48888652 3356999999542 2233332 2 36999999999999999999997655789999876443
Q ss_pred CCCC-------------c-cEEccCCCEEEEC---CeEEEEEecC------------CCCCCCEEEEeC----CCcEEEE
Q 020215 158 RIPG-------------I-DIVLNDGDKWMFA---GHEVHVIDTP------------GHTRGHISFYFP----GSAAVFT 204 (329)
Q Consensus 158 ~~~~-------------~-~~~~~~g~~~~~g---~~~v~~~~~p------------gHt~g~~~~~~~----~~~~lft 204 (329)
.+.. . ...+..++.++++ +.+|+.+.++ -|...++.|.++ +.+++|+
T Consensus 117 ~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~ 196 (302)
T PRK05184 117 DLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYA 196 (302)
T ss_pred HHHhcCCcccccccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEE
Confidence 2211 1 1345667788886 7888888875 245668899882 3468999
Q ss_pred CCc
Q 020215 205 GDT 207 (329)
Q Consensus 205 GD~ 207 (329)
+|.
T Consensus 197 tD~ 199 (302)
T PRK05184 197 PGL 199 (302)
T ss_pred CCC
Confidence 776
No 30
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.08 E-value=5e-10 Score=103.76 Aligned_cols=120 Identities=16% Similarity=0.193 Sum_probs=82.8
Q ss_pred EEEEEEECCCCeEEEEcCCCc-HHHHHHHHhc----C---CCccEEecCCCCcCccCChHHHHHhhCCeEEecCCcCCCC
Q 020215 88 YAYLLHDMDTGTVGVVDPSEA-VPVIDALSRK----N---RNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRI 159 (329)
Q Consensus 88 ~~yli~~~~~g~~vliD~g~~-~~~~~~l~~~----g---~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~ 159 (329)
.+++|.. +++..+|||+|.. ...+..+.+. | .+|++||+||.|.||+.|+..|.+...++||+++.+.+.+
T Consensus 39 ss~ll~~-~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~~lpVya~~~t~~~L 117 (302)
T TIGR02108 39 SSIAVSA-DGERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQPFTLYATEMVLQDL 117 (302)
T ss_pred cEEEEEe-CCCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCCCceEEECHHHHHHH
Confidence 4777765 3446899999943 2222222222 2 4799999999999999999999877789999998876544
Q ss_pred CC---------c---cEEccCCCEEEEC-----CeEEEEEecCC-------C------CCCCEEEEeC----CCcEEEEC
Q 020215 160 PG---------I---DIVLNDGDKWMFA-----GHEVHVIDTPG-------H------TRGHISFYFP----GSAAVFTG 205 (329)
Q Consensus 160 ~~---------~---~~~~~~g~~~~~g-----~~~v~~~~~pg-------H------t~g~~~~~~~----~~~~lftG 205 (329)
.. . ...+..++.+.++ +.+|+.+.++. | ..+.+.|.+. +.+++|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~t 197 (302)
T TIGR02108 118 SDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIP 197 (302)
T ss_pred HhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEEC
Confidence 21 0 0234556666664 47888888871 3 2467888884 45699999
Q ss_pred Ccc
Q 020215 206 DTL 208 (329)
Q Consensus 206 D~l 208 (329)
|+-
T Consensus 198 D~g 200 (302)
T TIGR02108 198 GCA 200 (302)
T ss_pred CCC
Confidence 973
No 31
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.03 E-value=7.7e-10 Score=102.50 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=74.1
Q ss_pred eEEEEEEECCCCeEEEEcCCCcHHHHHHHHhcC---CCccEEecCCCCcCccCChHHHHHhh-------CCeEEecCCcC
Q 020215 87 NYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKN---RNLTYILNTHHHHDHTGGNLELKARY-------GAKVIGSGVDK 156 (329)
Q Consensus 87 n~~yli~~~~~g~~vliD~g~~~~~~~~l~~~g---~~i~~ii~TH~H~DH~gg~~~l~~~~-------~~~v~~~~~~~ 156 (329)
.+|++|... +..++||+|.. ....+.+.+ .++++|++||.|.||++|+..+.... .++||+++...
T Consensus 18 ~~~~~v~~~--~~~iLiD~G~g--~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~ 93 (299)
T TIGR02651 18 LPSIALKLN--GELWLFDCGEG--TQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIK 93 (299)
T ss_pred CceEEEEEC--CeEEEEECCHH--HHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHH
Confidence 358888763 56899999965 233444433 36999999999999999999886531 35788887643
Q ss_pred CCCC----------C---ccEEccCCC-EEEECCeEEEEEecCCCCCCCEEEEeC
Q 020215 157 DRIP----------G---IDIVLNDGD-KWMFAGHEVHVIDTPGHTRGHISFYFP 197 (329)
Q Consensus 157 ~~~~----------~---~~~~~~~g~-~~~~g~~~v~~~~~pgHt~g~~~~~~~ 197 (329)
+.+. . ....+.+++ .+..++.+++.+.+. |+..++.|.+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 147 (299)
T TIGR02651 94 EFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLD-HSIPSLGYRFE 147 (299)
T ss_pred HHHHHHHHHcccCCCceEEEEEccCCCceEecCCEEEEEEEcC-CCCceEEEEEE
Confidence 3221 1 123456777 588899899888774 67778888764
No 32
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.02 E-value=2.4e-10 Score=108.48 Aligned_cols=119 Identities=23% Similarity=0.248 Sum_probs=85.5
Q ss_pred EEEEEECCCCeEEEEcCC-----CcHHHHHHHHh---cCCCccEEecCCCCcCccCChHHHHHh-hCCeEEecCCcCCCC
Q 020215 89 AYLLHDMDTGTVGVVDPS-----EAVPVIDALSR---KNRNLTYILNTHHHHDHTGGNLELKAR-YGAKVIGSGVDKDRI 159 (329)
Q Consensus 89 ~yli~~~~~g~~vliD~g-----~~~~~~~~l~~---~g~~i~~ii~TH~H~DH~gg~~~l~~~-~~~~v~~~~~~~~~~ 159 (329)
|+++..++ ..||+||| ......+++.. .-..+|+|++||+|.||+|-++.|.+. |+-+||+.+.+.+.+
T Consensus 196 a~lv~T~e--SrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T~PTRDlm 273 (637)
T COG1782 196 ALLVSTPE--SRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCTPPTRDLM 273 (637)
T ss_pred eEEEecCC--ceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcCCCCCeeeCCCcHHHH
Confidence 66666543 46889988 11233333332 123799999999999999999999875 466999999876643
Q ss_pred ------------------C----------CccEEccCCCEEEE-CCeEEEEEecCCCCCCCEEEEeC----CCcEEEECC
Q 020215 160 ------------------P----------GIDIVLNDGDKWMF-AGHEVHVIDTPGHTRGHISFYFP----GSAAVFTGD 206 (329)
Q Consensus 160 ------------------~----------~~~~~~~~g~~~~~-g~~~v~~~~~pgHt~g~~~~~~~----~~~~lftGD 206 (329)
| ..+++++.|+.-++ .|..+++++. ||--||....+. ..+++||||
T Consensus 274 ~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NA-GHILGSA~~HlHIGdGlyNi~yTGD 352 (637)
T COG1782 274 VLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNA-GHILGSAMAHLHIGDGLYNIVYTGD 352 (637)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecc-cchhcceeeEEEecCCceeEEEecc
Confidence 0 13456777887766 4677777765 999999998873 467999999
Q ss_pred cccc
Q 020215 207 TLFS 210 (329)
Q Consensus 207 ~l~~ 210 (329)
.-|.
T Consensus 353 fk~~ 356 (637)
T COG1782 353 FKFE 356 (637)
T ss_pred cccc
Confidence 8554
No 33
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=6.7e-10 Score=107.68 Aligned_cols=116 Identities=23% Similarity=0.278 Sum_probs=85.1
Q ss_pred EEEEEECCCCeEEEEcCCCcH--H--HHHHHHhcCCCccEEecCCCCcCccCChHHHHHh-hCCeEEecCCcCCCC----
Q 020215 89 AYLLHDMDTGTVGVVDPSEAV--P--VIDALSRKNRNLTYILNTHHHHDHTGGNLELKAR-YGAKVIGSGVDKDRI---- 159 (329)
Q Consensus 89 ~yli~~~~~g~~vliD~g~~~--~--~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~-~~~~v~~~~~~~~~~---- 159 (329)
|.++.. .+..+++|+|... . ..+..... .++|++++||+|.||+|+++.+... ++.+||+.+.+.+..
T Consensus 16 ~~~l~~--~~~~il~D~G~~~~~~~~~~p~~~~~-~~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~~l 92 (427)
T COG1236 16 CVLLET--GGTRILLDCGLFPGDPSPERPLLPPF-PKVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKVLL 92 (427)
T ss_pred EEEEEE--CCceEEEECCCCcCcCCccCCCCCCC-CCcCEEEeccCchhhhcccHHHHHhccCCceeeccCHHHHHHHHH
Confidence 777766 3468999999322 1 11211111 1689999999999999999998874 367888887754322
Q ss_pred ------C-----------------CccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeC--CCcEEEECCcc
Q 020215 160 ------P-----------------GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP--GSAAVFTGDTL 208 (329)
Q Consensus 160 ------~-----------------~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~--~~~~lftGD~l 208 (329)
. ...+.+.-|+.+++++..+++++. ||.+|+..+.++ +.+++||||.-
T Consensus 93 ~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~A-GHilGsa~~~le~~~~~ilytGD~~ 165 (427)
T COG1236 93 GDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNA-GHILGSAAILLEVDGGRILYTGDVK 165 (427)
T ss_pred HHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecC-CCccceeEEEEEeCCceEEEEeccC
Confidence 0 122457889999999988888866 999999999985 66799999985
No 34
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.02 E-value=1.9e-09 Score=100.24 Aligned_cols=108 Identities=17% Similarity=0.098 Sum_probs=73.4
Q ss_pred eEEEEEEECC--CCeEEEEcCCCcHHHHHHHHhcC---CCccEEecCCCCcCccCChHHHHHh-------hCCeEEecCC
Q 020215 87 NYAYLLHDMD--TGTVGVVDPSEAVPVIDALSRKN---RNLTYILNTHHHHDHTGGNLELKAR-------YGAKVIGSGV 154 (329)
Q Consensus 87 n~~yli~~~~--~g~~vliD~g~~~~~~~~l~~~g---~~i~~ii~TH~H~DH~gg~~~l~~~-------~~~~v~~~~~ 154 (329)
..+|+|...+ .+..+|||+|... ...+.+.+ .+|++|++||.|.||++|+..+... ..++||+++.
T Consensus 17 ~s~~lv~~~~~~~~~~iLiD~G~g~--~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~ 94 (303)
T TIGR02649 17 VTAILLNLQHPTQSGLWLFDCGEGT--QHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQG 94 (303)
T ss_pred ccEEEEEccCCCCCCEEEEECCccH--HHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechh
Confidence 3588886421 2367999999663 23444433 4799999999999999999987532 1368998886
Q ss_pred cCCCCC----------C---ccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeC
Q 020215 155 DKDRIP----------G---IDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP 197 (329)
Q Consensus 155 ~~~~~~----------~---~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~ 197 (329)
..+.+. . ....+..++.+..++.+++.+.+ -|+..+++|.+.
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~-~H~~~~~gy~i~ 149 (303)
T TIGR02649 95 IREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPL-EHPLECYGYRIE 149 (303)
T ss_pred HHHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEEc-cCccceEEEEEe
Confidence 443221 1 12345667777778878887766 577778888874
No 35
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.00 E-value=4.8e-10 Score=96.69 Aligned_cols=109 Identities=17% Similarity=0.283 Sum_probs=76.1
Q ss_pred EEEEcCCCcHH---HHHHHHhcCC---CccEEecCCCCcCccCChHHHHHhh---CCeEEecCCcCCCCC----------
Q 020215 100 VGVVDPSEAVP---VIDALSRKNR---NLTYILNTHHHHDHTGGNLELKARY---GAKVIGSGVDKDRIP---------- 160 (329)
Q Consensus 100 ~vliD~g~~~~---~~~~l~~~g~---~i~~ii~TH~H~DH~gg~~~l~~~~---~~~v~~~~~~~~~~~---------- 160 (329)
.+|||||.... +...+..... ++++|++||.|.||+.|+..+.... +.++|+++...+.+.
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~ 81 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREYKFGILDLY 81 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHHHHTHHTTC
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhhhccccccc
Confidence 58999996543 2223333222 8999999999999999977776553 228998875443222
Q ss_pred -----CccEEccCCCEEEECCeEEEEEecCCCCCCCEE----EEeC--CCcEEEECCccc
Q 020215 161 -----GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHIS----FYFP--GSAAVFTGDTLF 209 (329)
Q Consensus 161 -----~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~----~~~~--~~~~lftGD~l~ 209 (329)
.....+..++.+++++.+++.+.+ .|..+..+ |+++ +.+++|+||+-+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~H~~~~~~~~~g~~i~~~~~~i~~~gD~~~ 140 (194)
T PF12706_consen 82 PEEDNFDIIEISPGDEFEIGDFRITPFPA-NHGPPSYGGNKGFVIEPDGKKIFYSGDTNY 140 (194)
T ss_dssp CTTSGEEEEEECTTEEEEETTEEEEEEEE-ESSSCCEEECCEEEEEETTEEEEEETSSSS
T ss_pred ccccceeEEEeccCceEEeceEEEEEEec-cccccccccCceEEEecCCcceEEeeccch
Confidence 112456778899999999999976 67777766 6664 788999999976
No 36
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=2.8e-09 Score=95.39 Aligned_cols=149 Identities=21% Similarity=0.217 Sum_probs=100.7
Q ss_pred EEEEEECCCCeEEEEcCCCcHHHHHHHHhcC---CCccEEecCCCCcCccCChHHHHHhhCCeEEecCCcCCCCCCccEE
Q 020215 89 AYLLHDMDTGTVGVVDPSEAVPVIDALSRKN---RNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRIPGIDIV 165 (329)
Q Consensus 89 ~yli~~~~~g~~vliD~g~~~~~~~~l~~~g---~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 165 (329)
..++.| ++.++++|+|-. .|.+.+ ..|+.+++||.|++|+|++..+.. .+++.+.-+...-......
T Consensus 97 ~tl~~d--~~~v~v~~~gls-----~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~---sp~l~~s~e~~gr~~~pt~ 166 (302)
T KOG4736|consen 97 ITLVVD--GGDVVVVDTGLS-----VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFPQ---SPILYHSMEYIGRHVTPTE 166 (302)
T ss_pred cceeec--CCceEEEecCCc-----hhhhcCcChhhcceeEEeccCcccccccccccC---CHHHhhhhhhcCCccChhh
Confidence 344543 667899999855 556655 589999999999999999988863 3334443332222233446
Q ss_pred ccCCCEEEECCeEEEEEecCCCCCCCEEEEeC----CCcEEEECCccccCcCCC-----CC---CCCHHHHHHHHHHHhC
Q 020215 166 LNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP----GSAAVFTGDTLFSLSCGK-----LF---EGTPGQMFSSLQKIMS 233 (329)
Q Consensus 166 ~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~----~~~~lftGD~l~~~~~~~-----~~---~~~~~~~~~sl~~l~~ 233 (329)
++.+..++++ -.+++..||||++-++++++. ..++.++||++.....-. +. -.|...-+++-+++..
T Consensus 167 l~e~~~~~l~-~~~~V~~TpGht~~~isvlv~n~~~~GTv~itGDLf~~~~dlde~d~i~~~e~s~d~~~kr~~r~~~v~ 245 (302)
T KOG4736|consen 167 LDERPYLKLS-PNVEVWKTPGHTQHDISVLVHNVDLYGTVAITGDLFPREEDLDEKDDIMSQEGSEDNAAKRQSRNRYVC 245 (302)
T ss_pred hccCCccccC-CceeEeeCCCCCCcceEEEEEeecccceEEEEeecccCCccccchhhhhhhccCCchhhhhhhhhcEEE
Confidence 7778888887 468889999999999988874 457999999986542211 11 1123334444555666
Q ss_pred CCCCeEEEeCCCccccC
Q 020215 234 LPDDTNVYCGHEYTLSN 250 (329)
Q Consensus 234 l~~~~~v~pgHg~~~~~ 250 (329)
|.+ .++||||++++-
T Consensus 246 l~D--~ivpgHg~~f~v 260 (302)
T KOG4736|consen 246 LAD--WIVPGHGPPFRV 260 (302)
T ss_pred Eee--eeecCCCCceee
Confidence 654 489999998764
No 37
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.85 E-value=2.3e-08 Score=94.53 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=89.9
Q ss_pred CCccEEecCCCCcCccC--ChHHHHHhh--CCeEEecCCcCCCC-----C-CccEEccCCCEEEECCeEEEEEec-----
Q 020215 120 RNLTYILNTHHHHDHTG--GNLELKARY--GAKVIGSGVDKDRI-----P-GIDIVLNDGDKWMFAGHEVHVIDT----- 184 (329)
Q Consensus 120 ~~i~~ii~TH~H~DH~g--g~~~l~~~~--~~~v~~~~~~~~~~-----~-~~~~~~~~g~~~~~g~~~v~~~~~----- 184 (329)
.+||+|++||.|.||+. .+..+.+.. .++++++....+.+ + .....++.|+.+++++.+++++..
T Consensus 108 ~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~h~~~ 187 (355)
T PRK11709 108 REIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVKDIKIHALDSFDRTA 187 (355)
T ss_pred CCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEECCEEEEEEecccccc
Confidence 37999999999999994 445555543 36677766543321 2 224568899999999999988865
Q ss_pred ----C-CCCC-----------CCEEEEe--CCCcEEEECCccccCc-------CCC----C-CCCC------HHHHHHHH
Q 020215 185 ----P-GHTR-----------GHISFYF--PGSAAVFTGDTLFSLS-------CGK----L-FEGT------PGQMFSSL 228 (329)
Q Consensus 185 ----p-gHt~-----------g~~~~~~--~~~~~lftGD~l~~~~-------~~~----~-~~~~------~~~~~~sl 228 (329)
| .|.. ..++|++ ++.+++|+||+.+... ... + .+.. .....+.+
T Consensus 188 ~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~~~i~~~~~iDvall~iG~~p~~~~~hm~p~ea~ 267 (355)
T PRK11709 188 LVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYFAKHGNDHQIDVALGSYGENPRGITDKMTSIDIL 267 (355)
T ss_pred ccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHHHHHHhcCCCCEEEecCCCCCCCCcCCCCHHHHH
Confidence 1 2221 1356666 5778999999965320 100 1 1110 01123445
Q ss_pred HHHhCCCCCeEEEeCCCccccChhhhcccCCChHHHHHHHHHHHHHHh
Q 020215 229 QKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRS 276 (329)
Q Consensus 229 ~~l~~l~~~~~v~pgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (329)
+....+++. .++|-|-..+.+. ....+.+..+.+.-++..+
T Consensus 268 ~~a~~l~ak-~vIpiH~dtf~~~------~~dp~~~~~~~~~~~~~~~ 308 (355)
T PRK11709 268 RMAESLNAK-VVIPVHHDIWSNF------QADPQEILVLWKMRKDRLQ 308 (355)
T ss_pred HHHHHcCCC-EEEEEChhhcccc------ccCHHHHHHHHHhhhhhcc
Confidence 555667787 4888887654432 2235555555555555444
No 38
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.79 E-value=2.9e-08 Score=83.68 Aligned_cols=104 Identities=25% Similarity=0.398 Sum_probs=61.9
Q ss_pred ecceEEEEEEECCCCeEEEEcCCCcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhhCCeEEecCCcCCCCCCcc
Q 020215 84 LRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRIPGID 163 (329)
Q Consensus 84 ~~~n~~yli~~~~~g~~vliD~g~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~~~ 163 (329)
++++ |++|.. .|..+++||.... ........++|+|++||.|.||+.-.. +.+. ....
T Consensus 5 lgha-~~~ie~--~g~~iliDP~~~~---~~~~~~~~~~D~IlisH~H~DH~~~~~-l~~~---------------~~~~ 62 (163)
T PF13483_consen 5 LGHA-SFLIET--GGKRILIDPWFSS---VGYAPPPPKADAILISHSHPDHFDPET-LKRL---------------DRDI 62 (163)
T ss_dssp EETT-EEEEEE--TTEEEEES--TTT-----T-TSS-B-SEEEESSSSTTT-CCCC-CCCH---------------HTSS
T ss_pred EEee-EEEEEE--CCEEEEECCCCCc---cCcccccCCCCEEEECCCccccCChhH-hhhc---------------cccc
Confidence 5555 999987 4789999998431 111222368999999999999987521 1110 1223
Q ss_pred EEccCCCEEEECCeEEEEEec-----CCCCCC-CEEEEe--CCCcEEEECCccc
Q 020215 164 IVLNDGDKWMFAGHEVHVIDT-----PGHTRG-HISFYF--PGSAAVFTGDTLF 209 (329)
Q Consensus 164 ~~~~~g~~~~~g~~~v~~~~~-----pgHt~g-~~~~~~--~~~~~lftGD~l~ 209 (329)
..+..++.+++++..++.+.. .++..+ ..+|++ ++.++++.||+..
T Consensus 63 ~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~ 116 (163)
T PF13483_consen 63 HVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGF 116 (163)
T ss_dssp EEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S
T ss_pred EEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCcc
Confidence 455668888999988888764 244444 566666 4778999999975
No 39
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.63 E-value=5.8e-08 Score=88.26 Aligned_cols=119 Identities=17% Similarity=0.224 Sum_probs=81.1
Q ss_pred EEEEEECCCCeEEEEcCC------CcHH--HHHHHHhcC---CCccEEecCCCCcCccCChHHHHHhh--CCeEEecCCc
Q 020215 89 AYLLHDMDTGTVGVVDPS------EAVP--VIDALSRKN---RNLTYILNTHHHHDHTGGNLELKARY--GAKVIGSGVD 155 (329)
Q Consensus 89 ~yli~~~~~g~~vliD~g------~~~~--~~~~l~~~g---~~i~~ii~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~ 155 (329)
|.|+.- +|..+++|+| +.+. -..++.+.| .-||-|++||.|.||+|+++++.+-. +-+||.+-.+
T Consensus 19 Cilvsi--~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIYMt~PT 96 (501)
T KOG1136|consen 19 CILVSI--GGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYDGPIYMTYPT 96 (501)
T ss_pred EEEEEE--CCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCCCceEEecch
Confidence 445443 5678999998 1111 223455544 46899999999999999999998874 6688887655
Q ss_pred CCCCCC-----------------------------ccEEccCCCEEEE-CCeEEEEEecCCCCCCCEEEEeC--CCcEEE
Q 020215 156 KDRIPG-----------------------------IDIVLNDGDKWMF-AGHEVHVIDTPGHTRGHISFYFP--GSAAVF 203 (329)
Q Consensus 156 ~~~~~~-----------------------------~~~~~~~g~~~~~-g~~~v~~~~~pgHt~g~~~~~~~--~~~~lf 203 (329)
.+.-|- ..+.+.-.+++.+ .+..++.+.. ||.-|...+++. +..+++
T Consensus 97 kaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYA-GHVLGAaMf~ikvGd~svvY 175 (501)
T KOG1136|consen 97 KAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYA-GHVLGAAMFYIKVGDQSVVY 175 (501)
T ss_pred hhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeec-ccccceeEEEEEecceeEEE
Confidence 432210 1123334455666 3556666654 999999999985 788999
Q ss_pred ECCcccc
Q 020215 204 TGDTLFS 210 (329)
Q Consensus 204 tGD~l~~ 210 (329)
|||.-..
T Consensus 176 TGDYnmT 182 (501)
T KOG1136|consen 176 TGDYNMT 182 (501)
T ss_pred ecCccCC
Confidence 9998644
No 40
>PRK00055 ribonuclease Z; Reviewed
Probab=98.57 E-value=8.8e-08 Score=87.10 Aligned_cols=66 Identities=26% Similarity=0.203 Sum_probs=47.7
Q ss_pred eEEEEEEECCCCeEEEEcCCCcHHHHHHHHhcC---CCccEEecCCCCcCccCChHHHHHhh-------CCeEEecCCcC
Q 020215 87 NYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKN---RNLTYILNTHHHHDHTGGNLELKARY-------GAKVIGSGVDK 156 (329)
Q Consensus 87 n~~yli~~~~~g~~vliD~g~~~~~~~~l~~~g---~~i~~ii~TH~H~DH~gg~~~l~~~~-------~~~v~~~~~~~ 156 (329)
++|++|... +..+|||+|.. ....+.+.+ .+|++|++||.|.||++|+..+...+ .++||+++...
T Consensus 20 ~~~~li~~~--~~~iLiD~G~g--~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~ 95 (270)
T PRK00055 20 VSSILLRLG--GELFLFDCGEG--TQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIK 95 (270)
T ss_pred CCEEEEEEC--CcEEEEECCHH--HHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHH
Confidence 469999763 46899999965 223333333 47999999999999999999876432 35688876543
No 41
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.39 E-value=5.2e-06 Score=73.07 Aligned_cols=155 Identities=19% Similarity=0.215 Sum_probs=88.8
Q ss_pred EEEEEECCCCeEEEEcCC-----------CcH-------HHHHHHHhcCCCccEEecCCCCcCccCC---------hHHH
Q 020215 89 AYLLHDMDTGTVGVVDPS-----------EAV-------PVIDALSRKNRNLTYILNTHHHHDHTGG---------NLEL 141 (329)
Q Consensus 89 ~yli~~~~~g~~vliD~g-----------~~~-------~~~~~l~~~g~~i~~ii~TH~H~DH~gg---------~~~l 141 (329)
+.+|.. .+-.++|||| +.+ +..+.+++.-++.+.|.+||.|.||..- ...-
T Consensus 17 At~vet--~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e~~ 94 (304)
T COG2248 17 ATFVET--KDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGETA 94 (304)
T ss_pred hheeec--CCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhcccch
Confidence 455554 3457999998 111 1223333344688899999999999753 0011
Q ss_pred HHhhCCeEEecCCcCCCC-----------------CCccEEccCCCEEEECCeEEEEEecCCCCCC-C-EEEE----e--
Q 020215 142 KARYGAKVIGSGVDKDRI-----------------PGIDIVLNDGDKWMFAGHEVHVIDTPGHTRG-H-ISFY----F-- 196 (329)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~-----------------~~~~~~~~~g~~~~~g~~~v~~~~~pgHt~g-~-~~~~----~-- 196 (329)
.+-|.-+++.-....+.+ ....+.+.||.+|.+|+..+++-..--|.++ + +.++ +
T Consensus 95 ~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~d 174 (304)
T COG2248 95 KEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTD 174 (304)
T ss_pred HHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEec
Confidence 111222222211111111 1235678899999999998888764334443 2 2222 2
Q ss_pred CCCcEEEECCccccC-------------------cCCC------CCCCCHHHHHHHHHHHhCCCCCeEEEeCCC
Q 020215 197 PGSAAVFTGDTLFSL-------------------SCGK------LFEGTPGQMFSSLQKIMSLPDDTNVYCGHE 245 (329)
Q Consensus 197 ~~~~~lftGD~l~~~-------------------~~~~------~~~~~~~~~~~sl~~l~~l~~~~~v~pgHg 245 (329)
.+.+++|+.|.=... +.+. +-..+.+..++.|+++.+....++|+-+|-
T Consensus 175 g~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHHl 248 (304)
T COG2248 175 GKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHHL 248 (304)
T ss_pred CCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeehh
Confidence 367899999984211 1111 112356777788888888766776777774
No 42
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.33 E-value=4.5e-07 Score=87.29 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=80.6
Q ss_pred EEEEEECCCCeEEEEcCCC-----cHHHHHHHHhcC-CCccEEecCCCCcCccCChHHHHHhh--CCeEEecCCcCCCCC
Q 020215 89 AYLLHDMDTGTVGVVDPSE-----AVPVIDALSRKN-RNLTYILNTHHHHDHTGGNLELKARY--GAKVIGSGVDKDRIP 160 (329)
Q Consensus 89 ~yli~~~~~g~~vliD~g~-----~~~~~~~l~~~g-~~i~~ii~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~~~ 160 (329)
|.++.- .|+.++.|||- .-..++++..-. ..+|.+++||.|.||++.++++.++. .-+++....+.....
T Consensus 29 C~ile~--kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~TkAi~k 106 (668)
T KOG1137|consen 29 CHILEY--KGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTKAIYK 106 (668)
T ss_pred EEEEEe--cCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccccceeEEecchHHHHH
Confidence 667765 57899999981 222334444433 47999999999999999999988764 345554443322110
Q ss_pred -------------C---------------ccEEccCCCEEEECCeEEEEEecCCCCCCCEEEEeC--CCcEEEECCccc
Q 020215 161 -------------G---------------IDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP--GSAAVFTGDTLF 209 (329)
Q Consensus 161 -------------~---------------~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~~~~~--~~~~lftGD~l~ 209 (329)
. ....++--+..++.|..|..++ .||--|...|.++ +.++|||||..-
T Consensus 107 wllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~-aGhVlgacMf~veiagv~lLyTGd~sr 184 (668)
T KOG1137|consen 107 WLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYH-AGHVLGACMFMVEIAGVRLLYTGDYSR 184 (668)
T ss_pred hhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeec-cchhhhheeeeeeeceEEEEeccccch
Confidence 0 0112333455667788888887 7999999988885 778999999863
No 43
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.25 E-value=1.4e-05 Score=73.14 Aligned_cols=54 Identities=24% Similarity=0.256 Sum_probs=38.1
Q ss_pred EEEEcCCCcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhhCCeEEecCC
Q 020215 100 VGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGV 154 (329)
Q Consensus 100 ~vliD~g~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~ 154 (329)
+++||+|... ..+.++..-..+|+||+||.|.||+.|+..|.+.+..+++....
T Consensus 42 ~~lid~g~~~-~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~~~~~~~~~~ 95 (269)
T COG1235 42 TLLIDAGPDL-RDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAYTLPIYVNPG 95 (269)
T ss_pred eEEEecChhH-HhhhhcccccccCeEEEecccHHhhcChHHHHHHhcCCcccccc
Confidence 6788887442 11122211247999999999999999999999987666665544
No 44
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.19 E-value=1.2e-05 Score=72.86 Aligned_cols=124 Identities=23% Similarity=0.277 Sum_probs=73.6
Q ss_pred eecceEEEEEEECCCCeEEEEcCCCcHHHHH------HHHhcCCCccEEecCCCCcCccCChHHHHHhhC-Ce-EEecCC
Q 020215 83 CLRDNYAYLLHDMDTGTVGVVDPSEAVPVID------ALSRKNRNLTYILNTHHHHDHTGGNLELKARYG-AK-VIGSGV 154 (329)
Q Consensus 83 ~~~~n~~yli~~~~~g~~vliD~g~~~~~~~------~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~-~~-v~~~~~ 154 (329)
++++. +++|.. .+..++|||.-...... .....-.++|+|++||.|.||++.........+ ++ ++.+..
T Consensus 11 wlGha-~~lie~--~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~~~~~~p~~ 87 (258)
T COG2220 11 WLGHA-AFLIET--GGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTNKAPVVVVPLG 87 (258)
T ss_pred Eecce-EEEEEE--CCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcCCCcEEEeHHH
Confidence 35665 899977 45789999962111000 001122479999999999999987766555433 54 444443
Q ss_pred c-----CCCCC-CccEEccCCCEEEECCeEEEEE---ecC-CCC--------CCCEEEEe--CCCcEEEECCccc
Q 020215 155 D-----KDRIP-GIDIVLNDGDKWMFAGHEVHVI---DTP-GHT--------RGHISFYF--PGSAAVFTGDTLF 209 (329)
Q Consensus 155 ~-----~~~~~-~~~~~~~~g~~~~~g~~~v~~~---~~p-gHt--------~g~~~~~~--~~~~~lftGD~l~ 209 (329)
. ....+ .....+..|+.+.+++.++.+. +.+ .+. -...+|++ ++.++++.||+-+
T Consensus 88 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~ 162 (258)
T COG2220 88 AGDLLIRDGVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGY 162 (258)
T ss_pred HHHHHHhcCCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEeccCccH
Confidence 2 11111 1234556788899988775443 322 222 22445555 4678999999953
No 45
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=97.86 E-value=8.2e-05 Score=73.74 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=81.6
Q ss_pred EEEEEEECCCCeEEEEcCCCcH----HHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhh--CCeEEecCCcCCC---
Q 020215 88 YAYLLHDMDTGTVGVVDPSEAV----PVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY--GAKVIGSGVDKDR--- 158 (329)
Q Consensus 88 ~~yli~~~~~g~~vliD~g~~~----~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~--- 158 (329)
.||++.- .|-.++||||... ..++.++..-..||+|++||.+.-|+||+++....+ +++||++-.....
T Consensus 16 ~cyllqi--D~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m 93 (764)
T KOG1135|consen 16 LCYLLQI--DGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQM 93 (764)
T ss_pred ceEEEEE--cCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhh
Confidence 4899987 3568999999433 244445544468999999999999999999988775 6789987653211
Q ss_pred --------------C-----C------CccEEccCCCEEEECC----eEEEEEecCCCCCCCEEEEe--CCCcEEEECCc
Q 020215 159 --------------I-----P------GIDIVLNDGDKWMFAG----HEVHVIDTPGHTRGHISFYF--PGSAAVFTGDT 207 (329)
Q Consensus 159 --------------~-----~------~~~~~~~~g~~~~~g~----~~v~~~~~pgHt~g~~~~~~--~~~~~lftGD~ 207 (329)
+ . .....++..+...+.| .++..++. ||..|...+-+ .+++++++=|.
T Consensus 94 ~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynA-GhmiGGsIWkI~k~~E~ivYavd~ 172 (764)
T KOG1135|consen 94 FMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNA-GHMIGGSIWKISKVGEDIVYAVDF 172 (764)
T ss_pred hHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecC-CCccCceEEEEEecCceEEEEEec
Confidence 0 0 0123456667766643 36666644 99999887766 25778888775
Q ss_pred c
Q 020215 208 L 208 (329)
Q Consensus 208 l 208 (329)
=
T Consensus 173 N 173 (764)
T KOG1135|consen 173 N 173 (764)
T ss_pred c
Confidence 3
No 46
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=97.74 E-value=5.7e-05 Score=69.82 Aligned_cols=63 Identities=29% Similarity=0.286 Sum_probs=44.2
Q ss_pred EEEEEEECCCCeEEEEcCCCcHHHHHHHHhcC---CCccEEecCCCCcCccCChHHHHHhh-------CCeEEecCC
Q 020215 88 YAYLLHDMDTGTVGVVDPSEAVPVIDALSRKN---RNLTYILNTHHHHDHTGGNLELKARY-------GAKVIGSGV 154 (329)
Q Consensus 88 ~~yli~~~~~g~~vliD~g~~~~~~~~l~~~g---~~i~~ii~TH~H~DH~gg~~~l~~~~-------~~~v~~~~~ 154 (329)
.+++|.. .+...+||||.... ..+...+ .+|++|++||.|.||+.|++.+.... ...||.++.
T Consensus 21 ~s~ll~~--~~~~~L~DcGeGt~--~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g 93 (292)
T COG1234 21 SSILLRL--EGEKFLFDCGEGTQ--HQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPG 93 (292)
T ss_pred ceeEEEe--CCeeEEEECCHhHH--HHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcc
Confidence 3777765 45678899996642 2233322 47999999999999999999765432 247787754
No 47
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=97.73 E-value=7.9e-05 Score=67.70 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=40.3
Q ss_pred EEEEEECCCCeEEEEc-CCCcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHH-h--h-----CCeEEecCCcCC
Q 020215 89 AYLLHDMDTGTVGVVD-PSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKA-R--Y-----GAKVIGSGVDKD 157 (329)
Q Consensus 89 ~yli~~~~~g~~vliD-~g~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~-~--~-----~~~v~~~~~~~~ 157 (329)
+|++..+ ..+++| .|... ...|...-..++.+|+||+|.||++|+..+.- + . ...||.++...+
T Consensus 12 t~~~~~~---~~ilfD~ag~g~--~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~ 84 (277)
T TIGR02650 12 STIIYSP---EEIIFDAAEEGS--STLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNA 84 (277)
T ss_pred EEEEECc---hhheehhhcccc--hhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhH
Confidence 4555442 368999 77432 12222222368899999999999999965443 1 1 246888876443
No 48
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=96.93 E-value=0.0012 Score=64.07 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=64.1
Q ss_pred CccEEecCCCCcCccCChHHHHHhhCCeEEecCCcCCCCCC-------ccEEccCCCEEEECCeEEEEEecCCCCCCCEE
Q 020215 121 NLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRIPG-------IDIVLNDGDKWMFAGHEVHVIDTPGHTRGHIS 193 (329)
Q Consensus 121 ~i~~ii~TH~H~DH~gg~~~l~~~~~~~v~~~~~~~~~~~~-------~~~~~~~g~~~~~g~~~v~~~~~pgHt~g~~~ 193 (329)
...+=++||.|.||..|+.---. .-++|++..++..+.. ..+.+.-++.+.+.+..+.++.. -|.||++.
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~--~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~~~~vt~ldA-nHCPGa~m 188 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWS--HPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIPGIQVTLLDA-NHCPGAVM 188 (481)
T ss_pred ccceeeeeccccccccccccccc--CCcccccccchhhhhhhcccChhhceeecCCCceeecceEEEEecc-ccCCCceE
Confidence 68899999999999888765322 2238888877765532 23456667888888877777755 89999999
Q ss_pred EEeC---CCcEEEECCccc
Q 020215 194 FYFP---GSAAVFTGDTLF 209 (329)
Q Consensus 194 ~~~~---~~~~lftGD~l~ 209 (329)
++++ +..+|.|||.=+
T Consensus 189 f~F~~~~~~~~lhtGDFR~ 207 (481)
T KOG1361|consen 189 FLFELSFGPCILHTGDFRA 207 (481)
T ss_pred EEeecCCCceEEecCCccc
Confidence 9996 457999999743
No 49
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=96.20 E-value=0.0086 Score=56.21 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=17.1
Q ss_pred CccEEecCCCCcCccCChH
Q 020215 121 NLTYILNTHHHHDHTGGNL 139 (329)
Q Consensus 121 ~i~~ii~TH~H~DH~gg~~ 139 (329)
.|...++||.|.||+.|+-
T Consensus 79 ~I~~ylItH~HLDHi~gLv 97 (335)
T PF02112_consen 79 HIKGYLITHPHLDHIAGLV 97 (335)
T ss_pred hhheEEecCCchhhHHHHH
Confidence 6779999999999999875
No 50
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=94.07 E-value=0.057 Score=54.71 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=38.1
Q ss_pred cceEEEEEEECCCCeEEEEcCCCcH--HHHHHHH-----hcCCCccEEecCCCCcCccCChHHHHHh
Q 020215 85 RDNYAYLLHDMDTGTVGVVDPSEAV--PVIDALS-----RKNRNLTYILNTHHHHDHTGGNLELKAR 144 (329)
Q Consensus 85 ~~n~~yli~~~~~g~~vliD~g~~~--~~~~~l~-----~~g~~i~~ii~TH~H~DH~gg~~~l~~~ 144 (329)
+.-.++++..+ ....++.|||+.. ++..... ..-.++.+|++||.|.||.-|+..+.++
T Consensus 459 RNVSS~lv~i~-~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~ 524 (746)
T KOG2121|consen 459 RNVSSILVRID-SDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQA 524 (746)
T ss_pred cceEEEEEecc-CCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHHH
Confidence 33346777553 3335999999543 2222222 1114788999999999999998876654
No 51
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=93.04 E-value=1.4 Score=40.36 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=77.6
Q ss_pred EEEEEECCCCeEEEEcCC-CcHHHHHHHHhc---CCCccEEecCCCCcCccCChHHHHHhh-CCeEEecCCcCCC---CC
Q 020215 89 AYLLHDMDTGTVGVVDPS-EAVPVIDALSRK---NRNLTYILNTHHHHDHTGGNLELKARY-GAKVIGSGVDKDR---IP 160 (329)
Q Consensus 89 ~yli~~~~~g~~vliD~g-~~~~~~~~l~~~---g~~i~~ii~TH~H~DH~gg~~~l~~~~-~~~v~~~~~~~~~---~~ 160 (329)
+.+|.-. +|+.++..|- ...++.+.|++. +.+|+||+.--....|---+..++++| +|++|+.+..... ++
T Consensus 22 MTVVrL~-~G~L~VhSPvapT~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~afP~A~v~~~Pg~~s~p~~lp 100 (285)
T PF14234_consen 22 MTVVRLS-DGGLWVHSPVAPTPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAFPDAKVWAPPGQWSFPLNLP 100 (285)
T ss_pred EEEEEEC-CCCEEEECCCCCCHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHCCCCEEEeCCCcccccccCc
Confidence 4566654 4567777776 444566666665 569999999765556888888888888 8999998874321 11
Q ss_pred ----C--ccEEcc-CCCEEEE-CCeEEEEEe---cCCCCCCCEEEEeCCCcEEEECCccccC
Q 020215 161 ----G--IDIVLN-DGDKWMF-AGHEVHVID---TPGHTRGHISFYFPGSAAVFTGDTLFSL 211 (329)
Q Consensus 161 ----~--~~~~~~-~g~~~~~-g~~~v~~~~---~pgHt~g~~~~~~~~~~~lftGD~l~~~ 211 (329)
+ .+..+. +.....+ ++.+.+.+. ...|.-.-++++.+..+.|+..|++++-
T Consensus 101 ~~~~g~~~~~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk~SkTLIvTDll~ni 162 (285)
T PF14234_consen 101 LSWLGIPRDKTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHKPSKTLIVTDLLFNI 162 (285)
T ss_pred hhhcCCccccccccccCCCCchhheeeEEecccccCCCceeEEEEEECCCCeEEhhhchhhC
Confidence 0 011111 1111112 233344443 2457778888898889999999999763
No 52
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=86.24 E-value=2.2 Score=38.24 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=52.7
Q ss_pred CCccEEecCCCCcCccCChHHHHHhh--CCeEEecCCcCCCCC-----CccEEccCCCEEEE--CCeEEEEEecCC-CCC
Q 020215 120 RNLTYILNTHHHHDHTGGNLELKARY--GAKVIGSGVDKDRIP-----GIDIVLNDGDKWMF--AGHEVHVIDTPG-HTR 189 (329)
Q Consensus 120 ~~i~~ii~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~~~-----~~~~~~~~g~~~~~--g~~~v~~~~~pg-Ht~ 189 (329)
-++|.++++|.|+||... ..+.... +.+++.-+......+ .....+..+++.++ ++..+.+..+|. |.-
T Consensus 131 p~~d~~~vsh~h~dhld~-~~~~~~~~~~~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~ 209 (343)
T KOG3798|consen 131 PDLDFAVVSHDHYDHLDA-DAVKKITDRNPQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFVKNGKTYTIWCLPAQHWG 209 (343)
T ss_pred CCCceeccccccccccch-HHHHhhhccCccceeehhhhhheecCCCCCceeEeeccchhceecCCcEEEEEEcchhhhc
Confidence 379999999999999753 3333322 344444433322221 11234455555444 677788888874 432
Q ss_pred ------------CCEEEEeCCCcEEEECCcccc
Q 020215 190 ------------GHISFYFPGSAAVFTGDTLFS 210 (329)
Q Consensus 190 ------------g~~~~~~~~~~~lftGD~l~~ 210 (329)
+|-++.-+..+++|.||+-+.
T Consensus 210 ~R~L~D~Nk~LW~sw~v~g~~nrfffaGDTGyc 242 (343)
T KOG3798|consen 210 QRGLFDRNKRLWSSWAVIGENNRFFFAGDTGYC 242 (343)
T ss_pred ccccccCCcceeeeeEEecCCceEEecCCCCcc
Confidence 233444456789999999654
No 53
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=78.37 E-value=7.6 Score=27.12 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=29.8
Q ss_pred EEEEEECCCCeEEEE-cCCCcHHHHHHHHhcC---CCccEEecCCCC-cCccCC
Q 020215 89 AYLLHDMDTGTVGVV-DPSEAVPVIDALSRKN---RNLTYILNTHHH-HDHTGG 137 (329)
Q Consensus 89 ~yli~~~~~g~~vli-D~g~~~~~~~~l~~~g---~~i~~ii~TH~H-~DH~gg 137 (329)
+.++..+ . ...+| ++|+..+ ..+.+.+ .++..||+|+.. +|++||
T Consensus 14 ~l~l~~d-~-~rYlFGn~gEGtQ--R~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 14 SLLLFFD-S-RRYLFGNCGEGTQ--RACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred EEEEEeC-C-ceEEeccCCcHHH--HHHHHcCCCccccceEEECCCCcccccCC
Confidence 4555442 3 45678 8875432 2333332 589999999999 999987
No 54
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=73.77 E-value=1.2 Score=40.31 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=23.8
Q ss_pred CCccEEecCCCCcCccCChHH----HHHhhCCeEEecCCc
Q 020215 120 RNLTYILNTHHHHDHTGGNLE----LKARYGAKVIGSGVD 155 (329)
Q Consensus 120 ~~i~~ii~TH~H~DH~gg~~~----l~~~~~~~v~~~~~~ 155 (329)
..|..-++||+|.||+.|+-. +-++-.-+||+...+
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~t 150 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADT 150 (356)
T ss_pred hhhhheEeccccccchhceeecCccccccCCceEEechhH
Confidence 368889999999999998742 222212356665543
No 55
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=73.32 E-value=4.8 Score=41.19 Aligned_cols=46 Identities=17% Similarity=0.113 Sum_probs=33.0
Q ss_pred CCeEEEEcCCCc--HHHHHHHHhcCCCccEEecCCCCcCccCChHHHHH
Q 020215 97 TGTVGVVDPSEA--VPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKA 143 (329)
Q Consensus 97 ~g~~vliD~g~~--~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~ 143 (329)
+|-.||+|.|.. ..++..++... +||.|++||.-.|..+|+..+.+
T Consensus 56 nGf~iLv~GgserKS~fwklVrHld-rVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 56 NGFNILVNGGSERKSCFWKLVRHLD-RVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred cceEEeecCCcccccchHHHHHHHh-hhhhhhhcccccCccccchHHHH
Confidence 456788887743 23444444433 79999999999999999877654
No 56
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=45.42 E-value=2.4e+02 Score=25.64 Aligned_cols=118 Identities=13% Similarity=0.094 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHh---hCCeEEecCCcCCCC-CCccEEccCCCEEEECCeEEEEEec
Q 020215 109 VPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKAR---YGAKVIGSGVDKDRI-PGIDIVLNDGDKWMFAGHEVHVIDT 184 (329)
Q Consensus 109 ~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~---~~~~v~~~~~~~~~~-~~~~~~~~~g~~~~~g~~~v~~~~~ 184 (329)
...++.+...| +|++.+..+.+|+ |...+.+. .+.++++.....+.- +.....++.-..++.+|.++-++-.
T Consensus 72 ~~~~~~ln~~g--~D~~~lGNHefd~--G~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~ 147 (281)
T cd07409 72 NADAEFMNLLG--YDAMTLGNHEFDD--GVEGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGY 147 (281)
T ss_pred hHHHHHHHhcC--CCEEEeccccccC--CHHHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEE
Confidence 44556666655 6777777766775 56655543 355555433211110 0000111222234566766666542
Q ss_pred CCCCCCCEEEEeCCCcEEEECCccccCcCCCCCCCCHHHHHHHHHHHhCCCCCeEEEeCCCc
Q 020215 185 PGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEY 246 (329)
Q Consensus 185 pgHt~g~~~~~~~~~~~lftGD~l~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~~v~pgHg~ 246 (329)
. ......+... .+++- +....+...+.++++++-..+.+|+-.|..
T Consensus 148 ~---~~~~~~~~~~-----~~~~~--------~~d~~~~~~~~v~~lr~~~~D~II~l~H~G 193 (281)
T cd07409 148 T---TPDTTELSSP-----GGKVK--------FLDEIEAAQKEADKLKAQGVNKIIALSHSG 193 (281)
T ss_pred e---cCcccccccC-----CCceE--------ECCHHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 1 1111111100 01111 111224455556677666677778888985
No 57
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=44.86 E-value=29 Score=29.78 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=33.9
Q ss_pred EEEEECCCCeEEE----EcCCC-cHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhhCC-eEEec
Q 020215 90 YLLHDMDTGTVGV----VDPSE-AVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGA-KVIGS 152 (329)
Q Consensus 90 yli~~~~~g~~vl----iD~g~-~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~-~v~~~ 152 (329)
.++.+.++..+++ ||+|. .....+.|++.|..=-+++.||+-+ .+++....+...+ ++++.
T Consensus 76 ~vVGDV~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvf--s~~A~~~l~~s~Id~vvvT 142 (184)
T PF14572_consen 76 NVVGDVKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVF--SGDAPERLEESPIDEVVVT 142 (184)
T ss_dssp EEES--TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE-----TTHHHHHHHSSESEEEEE
T ss_pred EEEEEccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCccc--CchHHHHHhhcCCeEEEEe
Confidence 3444444444444 45663 3345567888885444899999887 5677766665444 55554
No 58
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=42.63 E-value=1.7e+02 Score=23.30 Aligned_cols=66 Identities=15% Similarity=0.310 Sum_probs=42.4
Q ss_pred ceecceEEEEEEECCCCeEEEEc----CC------CcHHHHHHHHhcCCCccEEecCCCCcCccC-ChHHHHHhhCCeEE
Q 020215 82 PCLRDNYAYLLHDMDTGTVGVVD----PS------EAVPVIDALSRKNRNLTYILNTHHHHDHTG-GNLELKARYGAKVI 150 (329)
Q Consensus 82 ~~~~~n~~yli~~~~~g~~vliD----~g------~~~~~~~~l~~~g~~i~~ii~TH~H~DH~g-g~~~l~~~~~~~v~ 150 (329)
+.++....|.|.+.+.|....++ |+ ....+.+.|...| ++.|+++. +| ++-...+..++++|
T Consensus 18 ~hFgrap~F~Ivd~e~g~i~~vev~~np~~~~~~g~G~~~a~~l~~~g--vdvvi~~~-----iG~~a~~~l~~~GIkv~ 90 (121)
T COG1433 18 PHFGRAPYFTIVDVEDGEIKNVEVIENPAASAEKGAGIRIAELLVDEG--VDVVIASN-----IGPNAYNALKAAGIKVY 90 (121)
T ss_pred CCccCCceEEEEEecCCcEEEEEEeecccccccCcchHHHHHHHHHcC--CCEEEECc-----cCHHHHHHHHHcCcEEE
Confidence 34555557777777777777765 31 3344667777766 88899988 44 23334444589999
Q ss_pred ecCC
Q 020215 151 GSGV 154 (329)
Q Consensus 151 ~~~~ 154 (329)
..+.
T Consensus 91 ~~~~ 94 (121)
T COG1433 91 VAPG 94 (121)
T ss_pred ecCC
Confidence 7665
No 59
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=35.70 E-value=4.8e+02 Score=26.38 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCccEEecCCCCcCccCChHHHHH---hhCCeEEec
Q 020215 111 VIDALSRKNRNLTYILNTHHHHDHTGGNLELKA---RYGAKVIGS 152 (329)
Q Consensus 111 ~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~---~~~~~v~~~ 152 (329)
.++.+... .+|+..+-++.+|+ |...|.+ ..+.++++.
T Consensus 74 ~i~~~N~~--g~Da~~lGNHEFd~--G~~~l~~~~~~~~fp~l~a 114 (550)
T TIGR01530 74 DAALMNAA--GFDFFTLGNHEFDA--GNEGLKEFLEPLEIPVLSA 114 (550)
T ss_pred HHHHHhcc--CCCEEEeccccccC--CHHHHHHHHHhCCCCEEEE
Confidence 44555444 48899999999998 5555544 335565554
No 60
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=34.91 E-value=58 Score=29.28 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=29.3
Q ss_pred eEEEEcCCCcHHHHHHHHhcCCCccEEecCCCCcCcc
Q 020215 99 TVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHT 135 (329)
Q Consensus 99 ~~vliD~g~~~~~~~~l~~~g~~i~~ii~TH~H~DH~ 135 (329)
-.+++||......+...++.|.+|-+++-|-.++|++
T Consensus 159 ~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~V 195 (252)
T COG0052 159 VLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGV 195 (252)
T ss_pred EEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCCccC
Confidence 4677888866666666777888888899998888887
No 61
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=33.92 E-value=31 Score=34.85 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=29.6
Q ss_pred EEEEcCCCcHHHHHHHHhcC-CCccEEecCCCCcCccC
Q 020215 100 VGVVDPSEAVPVIDALSRKN-RNLTYILNTHHHHDHTG 136 (329)
Q Consensus 100 ~vliD~g~~~~~~~~l~~~g-~~i~~ii~TH~H~DH~g 136 (329)
.+++|.|...+-++++++.. ..|+.|++-|+|+|-.-
T Consensus 421 ~VlvDnGsTeEDipA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 421 LVLVDNGSTEEDIPAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred EEEEcCCCcccccHHHHHHHhcCCCEEEEcCCCCcchh
Confidence 57889987766677777654 57999999999999865
No 62
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=33.27 E-value=4e+02 Score=24.74 Aligned_cols=30 Identities=27% Similarity=0.200 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCccEEecCCCCcCccCChHHHHH
Q 020215 110 PVIDALSRKNRNLTYILNTHHHHDHTGGNLELKA 143 (329)
Q Consensus 110 ~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~ 143 (329)
..++.+...| .|++.+-++.+|. |...|.+
T Consensus 70 ~~i~~mN~~g--~Da~tlGNHEFD~--G~~~L~~ 99 (313)
T cd08162 70 ADILILNALG--VQAIALGNHEFDL--GTDELAD 99 (313)
T ss_pred HHHHHHhccC--CcEEecccccccc--CHHHHHH
Confidence 3445555544 8888888888886 5555543
No 63
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=31.11 E-value=85 Score=24.89 Aligned_cols=12 Identities=33% Similarity=0.340 Sum_probs=9.4
Q ss_pred CcEEEECCcccc
Q 020215 199 SAAVFTGDTLFS 210 (329)
Q Consensus 199 ~~~lftGD~l~~ 210 (329)
.-++++||++..
T Consensus 37 d~vi~~GDl~~~ 48 (144)
T cd07400 37 DLVVITGDLTQR 48 (144)
T ss_pred CEEEECCCCCCC
Confidence 458999999854
No 64
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=30.75 E-value=3.9e+02 Score=23.81 Aligned_cols=25 Identities=8% Similarity=-0.055 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCCCeEEEeCCCcc
Q 020215 223 QMFSSLQKIMSLPDDTNVYCGHEYT 247 (329)
Q Consensus 223 ~~~~sl~~l~~l~~~~~v~pgHg~~ 247 (329)
...+.++.+++-..+.+|+-.|.+.
T Consensus 159 ~~~~~v~~~~~~~~D~iVvl~H~g~ 183 (257)
T cd07406 159 TARELVDELREQGADLIIALTHMRL 183 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEeccCc
Confidence 3344445566667788888899864
No 65
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=28.89 E-value=90 Score=28.20 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=23.0
Q ss_pred cEEEECCccccCcCCCCCCCCHHHHHHHHHHHhCCCCCeEEEeCC
Q 020215 200 AAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGH 244 (329)
Q Consensus 200 ~~lftGD~l~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~~v~pgH 244 (329)
-++++||+... ++.+++....+.+..++..++++||-
T Consensus 58 ~vvitGDl~~~--------~~~~~~~~~~~~l~~l~~Pv~~v~GN 94 (275)
T PRK11148 58 LIVATGDLAQD--------HSSEAYQHFAEGIAPLRKPCVWLPGN 94 (275)
T ss_pred EEEECCCCCCC--------CCHHHHHHHHHHHhhcCCcEEEeCCC
Confidence 48899998742 23455555555666665556666664
No 66
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.93 E-value=1.3e+02 Score=28.17 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=32.9
Q ss_pred CCeEEEEc----CC-CcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhhCC-eEEecC
Q 020215 97 TGTVGVVD----PS-EAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGA-KVIGSG 153 (329)
Q Consensus 97 ~g~~vliD----~g-~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~-~v~~~~ 153 (329)
++.+++|| +| ......+.|++.|..--+++.||+-+ .+++..-....++ +|+++.
T Consensus 217 Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvf--s~~a~~~l~~s~i~~iv~Td 277 (319)
T PRK04923 217 GKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVL--SGPAVDNINNSQLDELVVTD 277 (319)
T ss_pred CCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECccc--CchHHHHHhhCCCCEEEEeC
Confidence 34455555 55 34456678888886555899999877 4555433333344 555543
No 67
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=26.69 E-value=58 Score=32.88 Aligned_cols=52 Identities=27% Similarity=0.476 Sum_probs=27.7
Q ss_pred CCCcCccCChHHHHHhh-CCeEEecCCcC--CCCCCccEEccCCCEEEECCeEEEEEecCCCCC
Q 020215 129 HHHHDHTGGNLELKARY-GAKVIGSGVDK--DRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTR 189 (329)
Q Consensus 129 H~H~DH~gg~~~l~~~~-~~~v~~~~~~~--~~~~~~~~~~~~g~~~~~g~~~v~~~~~pgHt~ 189 (329)
=+|-|| |-..|.+.+ +..|.+.+..- ..+-.+.+.+. .|..++++.||||..
T Consensus 159 MGHVDH--GKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-------~G~~iTFLDTPGHaA 213 (683)
T KOG1145|consen 159 MGHVDH--GKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-------SGKSITFLDTPGHAA 213 (683)
T ss_pred eecccC--ChhhHHHHHhhCceehhhcCCccceeceEEEecC-------CCCEEEEecCCcHHH
Confidence 477888 444455544 45665544321 01111222333 346788999999963
No 68
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=25.78 E-value=1.5e+02 Score=27.51 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=30.1
Q ss_pred EEEEEECCCCeEEEEc-----CCCcHHHHHHHHhcCCCccEEecCCCCc
Q 020215 89 AYLLHDMDTGTVGVVD-----PSEAVPVIDALSRKNRNLTYILNTHHHH 132 (329)
Q Consensus 89 ~yli~~~~~g~~vliD-----~g~~~~~~~~l~~~g~~i~~ii~TH~H~ 132 (329)
..|+.|..+..+++|| +|.-..-.+.|.+.|.+=-+.++||+=+
T Consensus 206 m~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVf 254 (316)
T KOG1448|consen 206 MVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVF 254 (316)
T ss_pred EEEEeccCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceec
Confidence 5778887777788888 3443344556777785444889999844
No 69
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.98 E-value=1.4e+02 Score=28.04 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=32.6
Q ss_pred CCeEEEEc----CC-CcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhhCC-eEEecC
Q 020215 97 TGTVGVVD----PS-EAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGA-KVIGSG 153 (329)
Q Consensus 97 ~g~~vliD----~g-~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~-~v~~~~ 153 (329)
+..+++|| +| ......+.|++.|..=-+++.||+-+ .+++.......++ +|++..
T Consensus 218 gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif--~~~a~~~l~~s~i~~iv~Td 278 (323)
T PRK02458 218 GKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLF--AGGAAEVLENAPIKEILVTD 278 (323)
T ss_pred CCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhc--CchHHHHHhhCCCCEEEEEC
Confidence 34455555 55 34446677888885444789999866 4566544443345 555543
No 70
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=24.81 E-value=22 Score=31.44 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=19.4
Q ss_pred CCCcCccCChHHHHHhhCC-eEEecCC
Q 020215 129 HHHHDHTGGNLELKARYGA-KVIGSGV 154 (329)
Q Consensus 129 H~H~DH~gg~~~l~~~~~~-~v~~~~~ 154 (329)
|.|.||+-++-.+.+..|+ +|++|.-
T Consensus 42 HSh~~Hl~al~~~a~~~gv~~V~vH~f 68 (223)
T PF06415_consen 42 HSHIDHLFALIKLAKKQGVKKVYVHAF 68 (223)
T ss_dssp S--HHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 9999999999999888887 5877753
No 71
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=23.91 E-value=1.4e+02 Score=25.79 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=28.5
Q ss_pred eEEEEc---CC-CcHHHHHHHHhcCCCccEEecCCCCcCccCChHHH
Q 020215 99 TVGVVD---PS-EAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLEL 141 (329)
Q Consensus 99 ~~vliD---~g-~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l 141 (329)
++++.| || .+.++...|.+.|.++-.||+| +|.|=--....+
T Consensus 50 GclllDvrMPg~sGlelq~~L~~~~~~~PVIfiT-GhgDIpmaV~Am 95 (202)
T COG4566 50 GCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLT-GHGDIPMAVQAM 95 (202)
T ss_pred CeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEe-CCCChHHHHHHH
Confidence 578888 45 5667888999988776668887 455543333333
No 72
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=23.84 E-value=91 Score=29.14 Aligned_cols=62 Identities=24% Similarity=0.289 Sum_probs=36.7
Q ss_pred EEEEEECCCCeEEEEc----CC-CcHHHHHHHHhcCCCccEEecCCCCcCccCChHHHHHhhCC-eEEec
Q 020215 89 AYLLHDMDTGTVGVVD----PS-EAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGA-KVIGS 152 (329)
Q Consensus 89 ~yli~~~~~g~~vliD----~g-~~~~~~~~l~~~g~~i~~ii~TH~H~DH~gg~~~l~~~~~~-~v~~~ 152 (329)
.+++.+.+++.+++|| +| ..-...+.|++.|.+=-++..||+=+= |++....+...+ +|++.
T Consensus 206 ~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs--~~a~~~l~~~~i~~vivT 273 (314)
T COG0462 206 MNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFS--GAALERLEASAIDEVIVT 273 (314)
T ss_pred eecccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhhC--hHHHHHHhcCCCCEEEEe
Confidence 4455555555566665 55 333456778888854448999998663 555555444223 45544
No 73
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=21.79 E-value=1.6e+02 Score=25.83 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=21.3
Q ss_pred CcEEEECCccccCcCCCCCCCCHHHHHHHHHHHhCCCCCeEEEeC-CC
Q 020215 199 SAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCG-HE 245 (329)
Q Consensus 199 ~~~lftGD~l~~~~~~~~~~~~~~~~~~sl~~l~~l~~~~~v~pg-Hg 245 (329)
+-++++||+... .+.+.+...++.+.+++..++++|| |+
T Consensus 43 D~viiaGDl~~~--------~~~~~~~~~l~~l~~l~~~v~~V~GNHD 82 (232)
T cd07393 43 DIVLIPGDISWA--------MKLEEAKLDLAWIDALPGTKVLLKGNHD 82 (232)
T ss_pred CEEEEcCCCccC--------CChHHHHHHHHHHHhCCCCeEEEeCCcc
Confidence 347788887521 1234555555556665444455565 44
No 74
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=21.08 E-value=2.7e+02 Score=27.02 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=44.9
Q ss_pred eeeeeceeeeecCCCcceEEEeceecceEEEEEEECCCCeEEEEcCCCcHHHHHHHHhcC-CCccEEecCCCC
Q 020215 60 SLRVAEFCSISNMSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKN-RNLTYILNTHHH 131 (329)
Q Consensus 60 ~~~v~~g~~~~~~~~~~~i~~~~~~~~n~~yli~~~~~g~~vliD~g~~~~~~~~l~~~g-~~i~~ii~TH~H 131 (329)
...|+.|..++.....-.+.....-..+ +++........+=++|+.....+.+.....| ++.++|++.++.
T Consensus 158 iWnv~tgeali~l~hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 158 IWNVGTGEALITLDHPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred EEeccCCceeeecCCCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 5577778666665433334433333333 6777666666788899986655444444456 578899998876
Done!