BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020216
         (329 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
           Phe169 In Function And Structural Dynamics And Reveals A
           Novel Dfg-Out State
 pdb|3O8T|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg-Motif
           Mutants In Response To Inhibitor Binding
          Length = 360

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 51  QGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINDACRFFLIESGLA 103
           Q  T D +  L   ++    ++HSA ++ R +  S   +N+ C   ++++GLA
Sbjct: 120 QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDAGLA 172


>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
           Phe169 In Function And Structural Dynamics And Reveals A
           Novel Dfg-Out State
 pdb|3OBJ|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
           Response To Inhibitor Binding
          Length = 360

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 51  QGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINDACRFFLIESGLA 103
           Q  T D +  L   ++    ++HSA ++ R +  S   +N+ C   +++ GLA
Sbjct: 120 QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDRGLA 172


>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
           Phe169 In Function And Structural Dynamics And Reveals A
           Novel Dfg-Out State
 pdb|3OBG|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
           Response To Inhibitor Binding
 pdb|3OC1|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
           Mutants In Response To Inhibitor Binding
          Length = 360

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 51  QGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINDACRFFLIESGLA 103
           Q  T D +  L   ++    ++HSA ++ R +  S   +N+ C   +++ GLA
Sbjct: 120 QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDGGLA 172


>pdb|3SZE|A Chain A, Crystal Structure Of The Passenger Domain Of The E. Coli
           Autotransporter Espp
          Length = 968

 Score = 27.7 bits (60), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 98  IESGLALLV-AFLINVAVISVSGTVCSAANLSYDNKHQCSDITLNSASFLL 147
           IE+G  +   + + + + IS+SG +    N   DNK + S I LN AS+LL
Sbjct: 683 IENGADVTTQSGMFSTSDISISGNLSMTGNPDKDNKFEPS-IYLNDASYLL 732


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,133,752
Number of Sequences: 62578
Number of extensions: 283928
Number of successful extensions: 775
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 6
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)