Query 020216
Match_columns 329
No_of_seqs 250 out of 1253
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:58:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 6.3E-59 1.4E-63 457.4 8.0 274 6-289 159-486 (503)
2 PRK00701 manganese transport p 100.0 3E-48 6.5E-53 388.8 25.4 230 3-243 161-437 (439)
3 TIGR01197 nramp NRAMP (natural 100.0 1E-42 2.2E-47 344.1 20.4 199 3-207 131-390 (390)
4 PF01566 Nramp: Natural resist 100.0 1.1E-41 2.5E-46 332.0 19.0 203 4-214 110-358 (358)
5 COG1914 MntH Mn2+ and Fe2+ tra 100.0 1.1E-40 2.4E-45 331.0 24.2 228 6-244 145-414 (416)
6 COG0733 Na+-dependent transpor 94.2 4.5 9.7E-05 41.4 18.0 148 7-173 163-322 (439)
7 TIGR00366 conserved hypothetic 80.2 30 0.00065 35.5 12.4 45 164-208 358-430 (438)
8 TIGR00835 agcS amino acid carr 71.0 1.3E+02 0.0028 30.8 15.1 161 4-182 182-361 (425)
9 COG2271 UhpC Sugar phosphate p 65.6 1.6E+02 0.0035 30.4 13.5 134 88-230 18-173 (448)
10 COG3949 Uncharacterized membra 61.7 87 0.0019 31.2 10.4 58 145-202 70-158 (349)
11 PF01235 Na_Ala_symp: Sodium:a 61.2 1.7E+02 0.0036 29.9 12.8 157 4-183 155-335 (416)
12 PF00209 SNF: Sodium:neurotran 58.5 2.3E+02 0.0049 29.3 14.0 160 4-173 196-365 (523)
13 PRK12489 anaerobic C4-dicarbox 55.1 2.6E+02 0.0056 28.9 13.3 37 140-176 70-106 (443)
14 PRK09509 fieF ferrous iron eff 50.7 2E+02 0.0043 27.5 10.9 89 6-104 74-162 (299)
15 PF05313 Pox_P21: Poxvirus P21 45.4 1.4E+02 0.0031 27.1 8.2 61 173-237 76-137 (189)
16 PF09877 DUF2104: Predicted me 43.6 81 0.0017 25.9 5.8 86 11-111 4-95 (99)
17 PRK03557 zinc transporter ZitB 40.8 3.4E+02 0.0073 26.2 10.9 20 6-25 82-101 (312)
18 PF05915 DUF872: Eukaryotic pr 39.4 1.6E+02 0.0034 24.7 7.2 29 258-287 81-109 (115)
19 PRK13743 conjugal transfer pro 37.6 1.9E+02 0.0041 25.0 7.3 106 67-174 2-111 (141)
20 PRK02983 lysS lysyl-tRNA synth 35.7 3.7E+02 0.0081 31.0 11.6 29 259-287 204-232 (1094)
21 COG1115 AlsT Na+/alanine sympo 35.4 5.3E+02 0.011 26.8 13.4 43 141-183 337-379 (452)
22 PF00324 AA_permease: Amino ac 33.4 4.6E+02 0.0099 26.4 11.0 34 146-179 279-312 (478)
23 TIGR00930 2a30 K-Cl cotranspor 31.7 8.1E+02 0.018 27.8 21.9 29 155-183 386-414 (953)
24 PRK15433 branched-chain amino 31.4 6E+02 0.013 26.2 17.8 85 91-183 223-308 (439)
25 PF01528 Herpes_glycop: Herpes 29.9 6E+02 0.013 25.7 12.1 74 138-212 187-269 (374)
26 PF06570 DUF1129: Protein of u 27.8 4.5E+02 0.0099 23.6 11.1 17 186-202 119-135 (206)
27 PF11044 TMEMspv1-c74-12: Plec 27.6 89 0.0019 22.1 3.2 24 258-281 8-31 (49)
28 TIGR00907 2A0304 amino acid pe 27.2 6.5E+02 0.014 25.3 18.6 33 145-177 293-326 (482)
29 COG4711 Predicted membrane pro 26.6 2.2E+02 0.0047 26.6 6.4 28 94-121 28-55 (217)
30 TIGR01297 CDF cation diffusion 26.3 5.1E+02 0.011 23.7 10.9 17 6-22 53-69 (268)
31 PF05525 Branch_AA_trans: Bran 25.6 7.4E+02 0.016 25.4 16.3 86 90-183 218-304 (427)
32 KOG2568 Predicted membrane pro 25.4 5E+02 0.011 27.4 9.5 53 155-211 314-370 (518)
33 TIGR00796 livcs branched-chain 24.9 7.1E+02 0.015 24.9 15.2 44 140-183 254-298 (378)
34 COG0053 MMT1 Predicted Co/Zn/C 24.4 6.5E+02 0.014 24.3 10.4 90 6-105 76-165 (304)
35 PF05545 FixQ: Cbb3-type cytoc 23.1 1.2E+02 0.0026 21.1 3.3 15 268-283 20-34 (49)
36 TIGR03810 arg_ornith_anti argi 21.9 8.2E+02 0.018 24.6 21.4 36 143-178 266-301 (468)
37 TIGR00908 2A0305 ethanolamine 21.1 8.1E+02 0.018 24.2 21.3 13 5-17 141-153 (442)
38 PRK10263 DNA translocase FtsK; 20.7 1E+03 0.022 28.3 11.5 163 78-277 3-179 (1355)
39 PF04156 IncA: IncA protein; 20.4 4.5E+02 0.0098 23.0 7.3 62 219-286 7-68 (191)
40 PRK12488 acetate permease; Pro 20.2 7.4E+02 0.016 25.8 9.9 21 159-179 354-374 (549)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-59 Score=457.40 Aligned_cols=274 Identities=41% Similarity=0.624 Sum_probs=243.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhcccccccccC--CChHHHHHHHhchhhhhHHHHHhhhhhhccCCC
Q 020216 6 QVRKLEMLITVLVFIMAACFFGEMSYVKPPAADVLKGMFVPKLSG--QGATGDAIALLGALVMPHNLFLHSALVLSRKVP 83 (329)
Q Consensus 6 ~yRklE~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~Gl~vP~l~~--~~~~~~avaiiGatImPhnlflhSalV~~R~~~ 83 (329)
+.||+|.++++|+..|++||.+|+..+||+.+|++.|+|+|++++ ++.+++++|++||+|||||+||||++||+|+.|
T Consensus 159 GiRklE~~~~~Li~~mai~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d 238 (503)
T KOG1291|consen 159 GIRKLEAFFAFLIVTMAISFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLID 238 (503)
T ss_pred chHHHHHHHHHHHHHHHHHHheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccC
Confidence 689999999999999999999999999999999999999999996 467899999999999999999999999999999
Q ss_pred CCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCC-CC-----CCCcccccccHHHHHHHHHHhhhhHH
Q 020216 84 NSV-RGINDACRFFLIESGLALLVAFLINVAVISVS-GTVCSAANL-SY-----DNKHQCSDITLNSASFLLQNVLGKSS 155 (329)
Q Consensus 84 ~~~-~~~~~a~~~~~iDs~ial~vs~lIn~aI~iva-A~vl~~~g~-~~-----~~~~~~~~~~l~~a~~~L~~~~G~~a 155 (329)
|.. ++++|+++|+.+|+.++++++|.||.+++.++ |+.+++... .+ ++.++..+.|+.+++.+|++.+|+++
T Consensus 239 ~~~~~~v~ea~~y~~ies~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~~a 318 (503)
T KOG1291|consen 239 RDVKKGVYEANNYFPIESAIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGPAA 318 (503)
T ss_pred HhhhhhhHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhccHH
Confidence 864 57899999999999999999999999999999 776655432 11 12234456799999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcchhhHHHHH--------------------------------------------HHhhhhhH
Q 020216 156 KIVYAIALLASGQSSTITGTYAGQYIMQ--------------------------------------------MILSFELP 191 (329)
Q Consensus 156 ~~iFaiGLlaAG~sStitgt~agq~vme--------------------------------------------Vi~sl~LP 191 (329)
.++|++||++||||||+|||||||++|| |+||++||
T Consensus 319 ~~Ifai~lLasGQSstitgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LP 398 (503)
T KOG1291|consen 319 LYIFAIGLLASGQSSTITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLP 398 (503)
T ss_pred HHHHHHHHHHCCCcccceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcCCCcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhhHHHHHHHHHHHHH
Q 020216 192 FALIPLLKFSSSATKMGPHKNSIYVRLIIVISWILGLGIIGINIYYLSTGFVDWLIHNSLPKVGNVFIGIIVFPLMAVYM 271 (329)
Q Consensus 192 falipLl~~ts~k~iMG~~~n~~~~~~~~il~~i~~~lii~ln~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 271 (329)
|+++|+++|+|+|++||+|+|+.. .+..+|.+..+++.+|.|++++ +.....+.+ ..+...+....+.|+
T Consensus 399 Fa~iPLl~ftS~r~IM~~~~~~~~---~~~~~~~~~~~~~~in~y~~v~-~~~~~~~~~------~~~~~~~~~~~~~y~ 468 (503)
T KOG1291|consen 399 FAVIPLLTFTSSRKIMGVFKNGLV---TEELTWTVAALVLGINGYFLVS-FFWSLVGKH------SKIVVTVNVWTLAYL 468 (503)
T ss_pred HHHhhHHhhhccHHHhhhhccCcc---ceeeeehheeeeeeeeeEEeee-ehhhhcCCc------eeeehhHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999984 333333322 124455677788999
Q ss_pred HHHHHHHhcccccccccC
Q 020216 272 IAVIYLTFRKDTVVTFID 289 (329)
Q Consensus 272 ~~~~yl~~~~~~~~~~~~ 289 (329)
++++||+.++.+..+...
T Consensus 469 ~~i~yL~~~~l~~~~~~~ 486 (503)
T KOG1291|consen 469 AFILYLAATCLNAYSIIS 486 (503)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999988777654
No 2
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=3e-48 Score=388.78 Aligned_cols=230 Identities=41% Similarity=0.623 Sum_probs=214.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccc---ccCCChHHHHHHHhchhhhhHHHHHhhhhhhc
Q 020216 3 GIGQVRKLEMLITVLVFIMAACFFGEMSYVKPPAADVLKGMFVPK---LSGQGATGDAIALLGALVMPHNLFLHSALVLS 79 (329)
Q Consensus 3 ~~g~yRklE~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~Gl~vP~---l~~~~~~~~avaiiGatImPhnlflhSalV~~ 79 (329)
.+++||++|+++..++++|.+||+++++.++|||+|+++| ++|+ +|+++.++.++|++||||||||+|+||+++++
T Consensus 161 ~~~~y~~~E~i~~~lv~~m~l~f~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~ 239 (439)
T PRK00701 161 QRRGFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQT 239 (439)
T ss_pred HhcCccHHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3688999999999999999999999999999999999999 7999 88667789999999999999999999999998
Q ss_pred cCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccHHHHHHHHHHhhhhHHHHHH
Q 020216 80 RKVPNSVRGINDACRFFLIESGLALLVAFLINVAVISVSGTVCSAANLSYDNKHQCSDITLNSASFLLQNVLGKSSKIVY 159 (329)
Q Consensus 80 R~~~~~~~~~~~a~~~~~iDs~ial~vs~lIn~aI~ivaA~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~~G~~a~~iF 159 (329)
|++++.++..++++|+.|+|+.+++.+++++|.++++++|+++|++|.+. ..+.+|+++.|+|.+|++++++|
T Consensus 240 k~~~~~~~~~~~~l~~~r~Dt~~g~~i~~li~~ai~v~~A~~l~~~g~~~-------~~~~~~~a~~L~p~~G~~a~~lF 312 (439)
T PRK00701 240 RVVGRTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTD-------VADIEDAYLLLSPLLGAAAATLF 312 (439)
T ss_pred ccccCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-------cCCHHHHHHHHHHHHhHHHHHHH
Confidence 86555555678889999999999999999999999999999999887531 24789999999999999999999
Q ss_pred HHHHHHhhhhhhhhcchhhHHHHH--------------------------------------------HHhhhhhHHHHH
Q 020216 160 AIALLASGQSSTITGTYAGQYIMQ--------------------------------------------MILSFELPFALI 195 (329)
Q Consensus 160 aiGLlaAG~sStitgt~agq~vme--------------------------------------------Vi~sl~LPfali 195 (329)
++|+++|||+|+++++++||+++| ++++++||++++
T Consensus 313 aiGL~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aqv~~~i~LP~~~~ 392 (439)
T PRK00701 313 GIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELDPTRLLVLSQVVLSFGLPFALI 392 (439)
T ss_pred HHHHHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 788999999999
Q ss_pred HHHHHhcCCCcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020216 196 PLLKFSSSATKMGPHKNSIYVRLIIVISWILGLGIIGINIYYLSTGFV 243 (329)
Q Consensus 196 pLl~~ts~k~iMG~~~n~~~~~~~~il~~i~~~lii~ln~~~l~~~~~ 243 (329)
|+++++|||++||+|||+++ .++++|++.++++.+|++++++.+.
T Consensus 393 ~ll~l~~~~~imG~~~~~~~---~~~~~~~~~~~i~~l~~~~~~~~~~ 437 (439)
T PRK00701 393 PLLLFTSDRKLMGELVNPRW---VKIIAWIIAVLIVALNIYLLYQTFT 437 (439)
T ss_pred HHHHHHCCHHhhccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999 9999999999999999999987653
No 3
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=1e-42 Score=344.05 Aligned_cols=199 Identities=41% Similarity=0.629 Sum_probs=174.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhcccccccccC--CChHHHHHHHhchhhhhHHHHHhhhhhhcc
Q 020216 3 GIGQVRKLEMLITVLVFIMAACFFGEMSYVKPPAADVLKGMFVPKLSG--QGATGDAIALLGALVMPHNLFLHSALVLSR 80 (329)
Q Consensus 3 ~~g~yRklE~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~Gl~vP~l~~--~~~~~~avaiiGatImPhnlflhSalV~~R 80 (329)
.+++||++|+++..++++|.+||+++++.++|||+++++|+++|++|. ++.++.++|++||||||||+|+||++||+|
T Consensus 131 ~~~~yr~~E~~~~~lv~~m~~~f~~~~~~~~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~r 210 (390)
T TIGR01197 131 DKPGLRILEAFVALLVTIVAICFAYELFYAKPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQSR 210 (390)
T ss_pred HhCCceeHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhcc
Confidence 468899999999999999999999999999999999999988999873 466889999999999999999999999999
Q ss_pred CCCCCcc-chHHHH-------------HHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCCCCCcccccccHHHHHH
Q 020216 81 KVPNSVR-GINDAC-------------RFFLIESGLALLVAF-LINVAVISVSGTVCSAANLSYDNKHQCSDITLNSASF 145 (329)
Q Consensus 81 ~~~~~~~-~~~~a~-------------~~~~iDs~ial~vs~-lIn~aI~ivaA~vl~~~g~~~~~~~~~~~~~l~~a~~ 145 (329)
+++++++ ++|+++ ++.+.|+.++++... ++|.++++++|+++|+++-. +++.|++|+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~v~~~ilv~aaa~l~~~~~~------~~~~~~~~~~~ 284 (390)
T TIGR01197 211 LVDRDVKEGVSEANMYRPIEAAIALSVSFSINEFVIALFTAALFVNTNILVVAGATLFNSNNN------ADAADLFSIGV 284 (390)
T ss_pred ccCcccchhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC------cCcCCHHHHHH
Confidence 9877653 445544 455566666665544 48999999999999864310 12458999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhhhcchhhHHHHH------------------------------------------
Q 020216 146 LLQNVLGKSSKIVYAIALLASGQSSTITGTYAGQYIMQ------------------------------------------ 183 (329)
Q Consensus 146 ~L~~~~G~~a~~iFaiGLlaAG~sStitgt~agq~vme------------------------------------------ 183 (329)
.|||.+|++++++|++||++|||||++|+|++||++||
T Consensus 285 ~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~ 364 (390)
T TIGR01197 285 LLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGREGLTGALNA 364 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 99999999999999999999999999999999999999
Q ss_pred --HHhhhhhHHHHHHHHHHhcCCCcC
Q 020216 184 --MILSFELPFALIPLLKFSSSATKM 207 (329)
Q Consensus 184 --Vi~sl~LPfalipLl~~ts~k~iM 207 (329)
++++++|||+++|+++++|||++|
T Consensus 365 aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 365 SQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 889999999999999999999998
No 4
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=1.1e-41 Score=332.04 Aligned_cols=203 Identities=36% Similarity=0.558 Sum_probs=187.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhcccccccccCCChHHHHHHHhchhhhhHHHHHhhhhhhccCCC
Q 020216 4 IGQVRKLEMLITVLVFIMAACFFGEMSYVKPPAADVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVP 83 (329)
Q Consensus 4 ~g~yRklE~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~Gl~vP~l~~~~~~~~avaiiGatImPhnlflhSalV~~R~~~ 83 (329)
+|+||++|+++..++.+|.+||+++++.++|||+++.+|++.|++|+.+.+..++|++|+|+||||+|+||+.++||+++
T Consensus 110 ~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~ 189 (358)
T PF01566_consen 110 SGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWT 189 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccC
Confidence 68899999999999999999999999999999999999987799997567899999999999999999999999999987
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccHHHHHHHHHHhhh-hHHHHHHHHH
Q 020216 84 NSVRGINDACRFFLIESGLALLVAFLINVAVISVSGTVCSAANLSYDNKHQCSDITLNSASFLLQNVLG-KSSKIVYAIA 162 (329)
Q Consensus 84 ~~~~~~~~a~~~~~iDs~ial~vs~lIn~aI~ivaA~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~~G-~~a~~iFaiG 162 (329)
.+++..++++|+.|+|+.+|+.+++++|.++++++|.++|+++.. ..+.+|+++.|+|.+| ++++++|++|
T Consensus 190 ~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~--------~~~~~~~~~~L~~~~G~~~a~~lF~ig 261 (358)
T PF01566_consen 190 GNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSE--------VETAAQAAQALEPLLGSPWARYLFAIG 261 (358)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------hhhHHHHHHHHHHhcCchHHHHhHHHH
Confidence 644322268999999999999999999999999999999855432 3489999999999999 8999999999
Q ss_pred HHHhhhhhhhhcchhhHHHHH---------------------------------------------HHhhhhhHHHHHHH
Q 020216 163 LLASGQSSTITGTYAGQYIMQ---------------------------------------------MILSFELPFALIPL 197 (329)
Q Consensus 163 LlaAG~sStitgt~agq~vme---------------------------------------------Vi~sl~LPfalipL 197 (329)
+++|||||+++.+++++++++ +++++.+|++++|+
T Consensus 262 l~~a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~v~~~~~lP~~~~~l 341 (358)
T PF01566_consen 262 LFAAGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALLIGAPGAPVQLLIFAQVLNSLLLPFVAIPL 341 (358)
T ss_pred HHHHHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887 78899999999999
Q ss_pred HHHhcCCCcCCCCCchh
Q 020216 198 LKFSSSATKMGPHKNSI 214 (329)
Q Consensus 198 l~~ts~k~iMG~~~n~~ 214 (329)
++++|||++||+|||+|
T Consensus 342 ~~l~n~~~~mG~~~n~~ 358 (358)
T PF01566_consen 342 LLLANDKKLMGEYRNSW 358 (358)
T ss_pred HHHHcChhhhhCcccCC
Confidence 99999999999999986
No 5
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=330.97 Aligned_cols=228 Identities=34% Similarity=0.508 Sum_probs=210.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhcccccccccCCChHHHHHHHhchhhhhHHHHHhhhhhhccCCCCC
Q 020216 6 QVRKLEMLITVLVFIMAACFFGEMSYVKPPAADVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPNS 85 (329)
Q Consensus 6 ~yRklE~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~Gl~vP~l~~~~~~~~avaiiGatImPhnlflhSalV~~R~~~~~ 85 (329)
+||++|++...++.++.+||.++++.++|+|+++.+|.|+|+.|+.+.++.++|++|+|||||++|+||+.||++.. +
T Consensus 145 ~~r~~E~~v~~l~~~~~i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~--~ 222 (416)
T COG1914 145 GYRLLERVVLILGLVLVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGI--K 222 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccc--c
Confidence 69999999999999999999999999999999999999999988656789999999999999999999999998432 3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 020216 86 VRGINDACRFFLIESGLALLVAFLINVAVISVSGTVCSAANLSYDNKHQCSDITLNSASFLLQNVLGKSSKIVYAIALLA 165 (329)
Q Consensus 86 ~~~~~~a~~~~~iDs~ial~vs~lIn~aI~ivaA~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~~G~~a~~iFaiGLla 165 (329)
+++.+++.|+.++|+.+++..+.++|.++++++|..+|.++... ...+++++++.++|.+|+.+..+|++++++
T Consensus 223 ~~~~~~~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~------~~~~~~~a~~~l~~~~G~~~~~lF~v~lla 296 (416)
T COG1914 223 GEENLRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQ------DVADAYDAYLLLAPLLGSAAFVLFGVALLA 296 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc------cccchHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999998776421 135899999999999999999999999999
Q ss_pred hhhhhhhhcchhhHHHHH------------------------------------------HHhhhhhHHHHHHHHHHhcC
Q 020216 166 SGQSSTITGTYAGQYIMQ------------------------------------------MILSFELPFALIPLLKFSSS 203 (329)
Q Consensus 166 AG~sStitgt~agq~vme------------------------------------------Vi~sl~LPfalipLl~~ts~ 203 (329)
||++|+++++|+||++|| +++++++||+++|+++++++
T Consensus 297 sg~~s~~~~~~a~~~~~~g~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~ 376 (416)
T COG1914 297 AGLSSTVVATYAGQIVMEGFLNWRIPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSD 376 (416)
T ss_pred hHHHHHHHHhhhhHHHHHhhhcccCchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999998 88899999999999999999
Q ss_pred CCcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020216 204 ATKMGPHKNSIYVRLIIVISWILGLGIIGINIYYLSTGFVD 244 (329)
Q Consensus 204 k~iMG~~~n~~~~~~~~il~~i~~~lii~ln~~~l~~~~~~ 244 (329)
|++||+|+|++| .++++|+..+.+..+|++++++.+.+
T Consensus 377 k~~mg~~~~~~~---~~~~~~~v~~~i~~L~i~li~~~~~~ 414 (416)
T COG1914 377 KKLMGDYKNPRW---LTVLGWIVVILIVALNIILLVGTLGG 414 (416)
T ss_pred hhhhhcccchHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999 99999999999999999999876643
No 6
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=94.22 E-value=4.5 Score=41.41 Aligned_cols=148 Identities=22% Similarity=0.253 Sum_probs=86.5
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHhhc--CCCHHhhhcccccccccC---CChHHHHHHH------hchhhhhHHHHHhh
Q 020216 7 VRK-LEMLITVLVFIMAACFFGEMSYV--KPPAADVLKGMFVPKLSG---QGATGDAIAL------LGALVMPHNLFLHS 74 (329)
Q Consensus 7 yRk-lE~~~~~Lv~vm~l~F~~~~~~~--~Pd~~~v~~Gl~vP~l~~---~~~~~~avai------iGatImPhnlflhS 74 (329)
.+| +||.-++++=...++|+...+++ .|...|=.+=++.|..+. .+.+..|.|- +|-.+| +=+-|
T Consensus 163 V~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~m---itYsS 239 (439)
T COG0733 163 VKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIM---ITYSS 239 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHH---HHHHh
Confidence 344 88877777766666776665554 777777777777887542 2333333332 233333 22334
Q ss_pred hhhhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccHHHHHHHHHHhhhhH
Q 020216 75 ALVLSRKVPNSVRGINDACRFFLIESGLALLVAFLINVAVISVSGTVCSAANLSYDNKHQCSDITLNSASFLLQNVLGKS 154 (329)
Q Consensus 75 alV~~R~~~~~~~~~~~a~~~~~iDs~ial~vs~lIn~aI~ivaA~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~~G~~ 154 (329)
++=|++.. .+.+......|+.+++...+.|--++-..+.+. +.|.. -.-.++-++-..+. +|+.
T Consensus 240 YL~k~~~l------~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~--~~Gpg------L~Fi~LP~if~~mp--~G~~ 303 (439)
T COG0733 240 YLSKKSDL------VSSALSIVLLNTLISLLAGLVIFPALFSFGADA--SQGPG------LVFIVLPAVFNQMP--LGTL 303 (439)
T ss_pred hcCcccch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCe------eehhHHHHHHHhCc--hhHH
Confidence 44333222 345677888999998877765544444333331 11110 01123444444444 7888
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 020216 155 SKIVYAIALLASGQSSTIT 173 (329)
Q Consensus 155 a~~iFaiGLlaAG~sStit 173 (329)
-..+|-+.++.||.+|++.
T Consensus 304 ~~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 304 FGILFFLLLLFAALTSAIS 322 (439)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999884
No 7
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=80.16 E-value=30 Score=35.53 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=32.5
Q ss_pred HHhhhhhhhhcchhhHHHHH--------------------------HHhhhhhHHHHHHHHHHhcC--CCcCC
Q 020216 164 LASGQSSTITGTYAGQYIMQ--------------------------MILSFELPFALIPLLKFSSS--ATKMG 208 (329)
Q Consensus 164 laAG~sStitgt~agq~vme--------------------------Vi~sl~LPfalipLl~~ts~--k~iMG 208 (329)
+.+++......+-+|||+.+ ...-+.-||=.+|++-.+.= |++||
T Consensus 358 l~~~liNfFIPSGsGqwai~aPImvP~a~~LGvs~~~tv~Ay~~GD~~tNlI~PfWaLP~L~i~gL~arDImG 430 (438)
T TIGR00366 358 FSAGLINIFIPSGGGHWAIQGPIVIPAAQALGVDLGKSVMAIAYGDAWTNMAQPFWALPALGIAGLGARDIMG 430 (438)
T ss_pred HHHHHHHhcccCchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHhHHHhhHHHHHHHHHHcCCcHHHHhh
Confidence 67777788888889999887 12234559999999888753 45554
No 8
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=71.05 E-value=1.3e+02 Score=30.84 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=85.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCHHhhhcccccccccCCChHHHHHHHhchhhhhHHHH-Hhh
Q 020216 4 IGQVRKLEMLITVLVFIMAACFFGEMSYV--------KPPAADVLKGMFVPKLSGQGATGDAIALLGALVMPHNLF-LHS 74 (329)
Q Consensus 4 ~g~yRklE~~~~~Lv~vm~l~F~~~~~~~--------~Pd~~~v~~Gl~vP~l~~~~~~~~avaiiGatImPhnlf-lhS 74 (329)
.|+.|++-++...++-+|++.|+...+.. .|-...+.++-|-|+ ..+=|.+|++++--.-+ ...
T Consensus 182 ~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~AF~~~-------a~~GG~~G~~v~~ai~~Gv~R 254 (425)
T TIGR00835 182 FGGLKRIAKISSVVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSAFGGD-------AAAGGFAGSTVAQAIMIGVKR 254 (425)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCch-------hhHhHHHHHHHHHHHHHhhHH
Confidence 47788999988888888877774332222 344445555554332 12345667665422111 111
Q ss_pred hhhh-ccCCC---------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccHHHHH
Q 020216 75 ALVL-SRKVP---------NSVRGINDACRFFLIESGLALLVAFLINVAVISVSGTVCSAANLSYDNKHQCSDITLNSAS 144 (329)
Q Consensus 75 alV~-~R~~~---------~~~~~~~~a~~~~~iDs~ial~vs~lIn~aI~ivaA~vl~~~g~~~~~~~~~~~~~l~~a~ 144 (329)
++-- |-+.. +.++..||.+ ...+|..+--++..-++..++++++. +.+ .++. ...+-..
T Consensus 255 g~fSNEAG~Gsa~~a~a~a~~~hP~~QGl-~~~~~vfiDTivvCt~Talvil~tg~--~~~---~~~~-----~g~~lt~ 323 (425)
T TIGR00835 255 GLFSNEAGMGSAPIAAAAAQVSHPVRQGL-VQMLGVFIDTMIVCTATALVILLSGV--WNN---GEGL-----SGAQLTQ 323 (425)
T ss_pred HHhccccccCcHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCc--cCC---CCCC-----cHHHHHH
Confidence 1110 00110 1122344433 34444444333333444444544442 110 0010 1222234
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhhhcchhhHHHH
Q 020216 145 FLLQNVLGKSSKIVYAIALLASGQSSTITGTYAGQYIM 182 (329)
Q Consensus 145 ~~L~~~~G~~a~~iFaiGLlaAG~sStitgt~agq~vm 182 (329)
.+++..+|.+.+++.++.++.-++++.++..|-|+-..
T Consensus 324 ~af~~~~g~~g~~~v~i~~~lFaftTii~~~yyge~~~ 361 (425)
T TIGR00835 324 QALSYGLGSFGAVFVAVALFLFAFSTIIGWYYYGEKNA 361 (425)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888889999999999999999999998777776543
No 9
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=65.61 E-value=1.6e+02 Score=30.39 Aligned_cols=134 Identities=13% Similarity=0.121 Sum_probs=79.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccHHHHHHHHHHh---hh--h---------
Q 020216 88 GINDACRFFLIESGLALLVAFLINVAVISVSGTVCSAANLSYDNKHQCSDITLNSASFLLQNV---LG--K--------- 153 (329)
Q Consensus 88 ~~~~a~~~~~iDs~ial~vs~lIn~aI~ivaA~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~---~G--~--------- 153 (329)
++++..|+.|+...+++++.-..-.++=--+... ...+..+ ...|-.|.+.++... +| +
T Consensus 18 ~~~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a--~p~l~e~-----~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr 90 (448)
T COG2271 18 EIDKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLA--MPALIED-----GGLSKTQLGILGSAFSITYGVSKFVMGVLSDR 90 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc--cHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 4566788999998888876654333321111110 0111111 113455555544433 22 1
Q ss_pred -HHHHHHHHHHHHhhhhhhhhcchhhHHHHH-------HHhhhhhHHHHHHHHHHhcCCCcCCCCCchhhHHHHHHHHHH
Q 020216 154 -SSKIVYAIALLASGQSSTITGTYAGQYIMQ-------MILSFELPFALIPLLKFSSSATKMGPHKNSIYVRLIIVISWI 225 (329)
Q Consensus 154 -~a~~iFaiGLlaAG~sStitgt~agq~vme-------Vi~sl~LPfalipLl~~ts~k~iMG~~~n~~~~~~~~il~~i 225 (329)
-.++..++||+.+|....+-|.-.+-++|- ..|+..-|..---+-+..++++ -|. .-+.|-.+.|+-+.+
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e-RG~-~~siWn~shNiGGal 168 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE-RGT-WWSIWNTSHNIGGAL 168 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc-cCc-eEEEehhhhhcccch
Confidence 146788999999999999888888777665 7888889988888888777665 233 223343345665555
Q ss_pred HHHHH
Q 020216 226 LGLGI 230 (329)
Q Consensus 226 ~~~li 230 (329)
+..++
T Consensus 169 ~~~~~ 173 (448)
T COG2271 169 APLVA 173 (448)
T ss_pred HHHHH
Confidence 55444
No 10
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=61.72 E-value=87 Score=31.20 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=44.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhhhhhcchhhHHHHH-------------------------------HHhhhhhHHH
Q 020216 145 FLLQNVLGKSSKIVYAIALLASGQSSTITGTYAGQYIMQ-------------------------------MILSFELPFA 193 (329)
Q Consensus 145 ~~L~~~~G~~a~~iFaiGLlaAG~sStitgt~agq~vme-------------------------------Vi~sl~LPfa 193 (329)
+.++.++|++.+.++=+.++..=++++++...++....| -++++..|+.
T Consensus 70 ~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~L 149 (349)
T COG3949 70 EILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLGRVEGIITVNGIITPFL 149 (349)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHH
Confidence 467888898888888888888888888887776664443 4667888998
Q ss_pred HHHHHHHhc
Q 020216 194 LIPLLKFSS 202 (329)
Q Consensus 194 lipLl~~ts 202 (329)
.+.++..++
T Consensus 150 Ii~l~~v~~ 158 (349)
T COG3949 150 IIILVLVTL 158 (349)
T ss_pred HHHHHHHHH
Confidence 887665543
No 11
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=61.17 E-value=1.7e+02 Score=29.94 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=88.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhc---C-CCH----HhhhcccccccccCCChHHHHHHHhchhhhhHHHHHhhh
Q 020216 4 IGQVRKLEMLITVLVFIMAACFFGEMSYV---K-PPA----ADVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSA 75 (329)
Q Consensus 4 ~g~yRklE~~~~~Lv~vm~l~F~~~~~~~---~-Pd~----~~v~~Gl~vP~l~~~~~~~~avaiiGatImPhnlflhSa 75 (329)
.|+.|++-++...++=+|++.|+...+.. + ++. .++.++-|.|+ + ..-|.+|++++--. +.+
T Consensus 155 ~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~-----a--a~GG~~G~~i~~ai---~~G 224 (416)
T PF01235_consen 155 FGGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPK-----A--AFGGFAGSTIMMAI---RQG 224 (416)
T ss_pred HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCc-----c--chhhHHHHHHHHHH---HHh
Confidence 47789999999999999988887754443 2 222 34445544332 1 23466777774321 111
Q ss_pred hhhccCC-------C---------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccccc
Q 020216 76 LVLSRKV-------P---------NSVRGINDACRFFLIESGLALLVAFLINVAVISVSGTVCSAANLSYDNKHQCSDIT 139 (329)
Q Consensus 76 lV~~R~~-------~---------~~~~~~~~a~~~~~iDs~ial~vs~lIn~aI~ivaA~vl~~~g~~~~~~~~~~~~~ 139 (329)
+ +|+. . +.++-.||.+ ...+|..+--++-.-++..++++++.-- .+ ++ ...
T Consensus 225 v--~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl-~~~~~vFiDTiiVCt~TalvIl~tG~~~--~~---~~-----~~g 291 (416)
T PF01235_consen 225 V--ARGLFSNEAGLGSAPIAHAAAETDHPVRQGL-VQMFEVFIDTIIVCTITALVILVTGVWS--WG---SG-----LEG 291 (416)
T ss_pred h--hhhhccCCCCCChhHHHHHHhcCCCcHHHee-eeeehHhHHHHHHHHHHHHHhhccCCCC--CC---Cc-----chH
Confidence 1 1221 0 1122234432 2333333332233333334444433210 00 10 123
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhcchhhHHHHH
Q 020216 140 LNSASFLLQNVLGKSSKIVYAIALLASGQSSTITGTYAGQYIMQ 183 (329)
Q Consensus 140 l~~a~~~L~~~~G~~a~~iFaiGLlaAG~sStitgt~agq~vme 183 (329)
.+-...+++..+|+++.++.++.++.-+++|.+...+-|+-..+
T Consensus 292 ~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~ 335 (416)
T PF01235_consen 292 AALTQAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAE 335 (416)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456789999999999999999999999999998888776655
No 12
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=58.54 E-value=2.3e+02 Score=29.32 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=68.9
Q ss_pred ccchHHHHHHHHHHHH---HHHHHHHHHHhhcCCCHHhhhcccccccccC---CChHHHHHHHh--chhhhhHHHHHhhh
Q 020216 4 IGQVRKLEMLITVLVF---IMAACFFGEMSYVKPPAADVLKGMFVPKLSG---QGATGDAIALL--GALVMPHNLFLHSA 75 (329)
Q Consensus 4 ~g~yRklE~~~~~Lv~---vm~l~F~~~~~~~~Pd~~~v~~Gl~vP~l~~---~~~~~~avaii--GatImPhnlflhSa 75 (329)
.++.|+.+|++...+. ++.+. +......-|...+=++-++.|.... .+.+..|.+-. .-.+.-=.+--.++
T Consensus 196 ~kGi~~~~kv~~~~~~~p~v~l~i-l~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~S 274 (523)
T PF00209_consen 196 WKGIESIGKVMYPTLLLPFVLLII-LLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYGS 274 (523)
T ss_dssp TTTHHHHHHHHHHHHH---HHHHH-HHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHHT
T ss_pred EeccccccchhhhhhhhhhEEEEE-EEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEcC
Confidence 4567888887765432 22111 1122334566666667667776442 12233333321 00011001111222
Q ss_pred hhhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCc-ccccccHHHHHHHHHHh-hhh
Q 020216 76 LVLSRKVPNSVRGINDACRFFLIESGLALLVAFLINVAVISVSGTVCSAANLSYDNKH-QCSDITLNSASFLLQNV-LGK 153 (329)
Q Consensus 76 lV~~R~~~~~~~~~~~a~~~~~iDs~ial~vs~lIn~aI~ivaA~vl~~~g~~~~~~~-~~~~~~l~~a~~~L~~~-~G~ 153 (329)
..+ |+ ++-.|++.-....|+.+++..++.|-. ++--.| +..|.+.++.. +..........+++... .|+
T Consensus 275 y~~-~~----~n~~~~a~~v~~~~~~~sllag~~if~-~~g~~a---~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~ 345 (523)
T PF00209_consen 275 YNK-FK----NNIFRDALIVAFINTLVSLLAGLVIFS-VLGFLA---NELGVPISDVPESGPGLAFIVLPEAFSQMPGGR 345 (523)
T ss_dssp TS--TT----S-SHHHHHHHHHHHHHHHHTTGTHHHH-HHHHHH---HHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHH
T ss_pred cCC-CC----ccccccceEEEcCchhhhHhHHHHHHh-HHhhcc---cCCCCChhHhhCcCCCchHHHHHHHHHcCCCCc
Confidence 222 11 224567788888898888876655432 221111 11111111000 00001111222223222 355
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q 020216 154 SSKIVYAIALLASGQSSTIT 173 (329)
Q Consensus 154 ~a~~iFaiGLlaAG~sStit 173 (329)
.-..+|-+.++.+|.+|.+.
T Consensus 346 ~~~~lFFl~l~~agl~S~i~ 365 (523)
T PF00209_consen 346 FWAILFFLMLFLAGLTSQIS 365 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhhcCC
Confidence 55667777788888887775
No 13
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=55.10 E-value=2.6e+02 Score=28.87 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhcch
Q 020216 140 LNSASFLLQNVLGKSSKIVYAIALLASGQSSTITGTY 176 (329)
Q Consensus 140 l~~a~~~L~~~~G~~a~~iFaiGLlaAG~sStitgt~ 176 (329)
++...+.++...++.-+.+..+..+.+..++.+.+|-
T Consensus 70 ld~lv~~~~k~lrk~pk~i~llap~vt~l~afl~~Tg 106 (443)
T PRK12489 70 LDVMLQIAERLLRRNPKYITILAPFVTYTLTFLCGTG 106 (443)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHhCCcH
Confidence 4556666777666654444446666666665555553
No 14
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=50.66 E-value=2e+02 Score=27.45 Aligned_cols=89 Identities=10% Similarity=0.030 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhcccccccccCCChHHHHHHHhchhhhhHHHHHhhhhhhccCCCCC
Q 020216 6 QVRKLEMLITVLVFIMAACFFGEMSYVKPPAADVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPNS 85 (329)
Q Consensus 6 ~yRklE~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~Gl~vP~l~~~~~~~~avaiiGatImPhnlflhSalV~~R~~~~~ 85 (329)
+|.|+|.+..++.+++.+...+..+.- .... ++-|.-+....+...++.++..+.....+++....+ +. ++
T Consensus 74 G~~r~E~l~~l~~~~~l~~~~~~~~~e--si~~----l~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~--~~-~s 144 (299)
T PRK09509 74 GHGKAESLAALAQSMFISGSALFLFLT--GIQH----LISPTPMNDPGVGIIVTLVALICTLILVTFQRWVVR--KT-QS 144 (299)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH----HcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH--Hh-CC
Confidence 478999998876665543332222221 1222 223432222223345566666655443322222111 11 11
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 020216 86 VRGINDACRFFLIESGLAL 104 (329)
Q Consensus 86 ~~~~~~a~~~~~iDs~ial 104 (329)
...+...+..+.|...+.
T Consensus 145 -~~l~a~~~~~~~D~~~s~ 162 (299)
T PRK09509 145 -QAVRADMLHYQSDVMMNG 162 (299)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 234455566778877664
No 15
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=45.38 E-value=1.4e+02 Score=27.14 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=35.5
Q ss_pred hcchhhHHHHHHHhhhhhHHHHHHHHHHhcCCCcCCCC-CchhhHHHHHHHHHHHHHHHHHHHHHH
Q 020216 173 TGTYAGQYIMQMILSFELPFALIPLLKFSSSATKMGPH-KNSIYVRLIIVISWILGLGIIGINIYY 237 (329)
Q Consensus 173 tgt~agq~vmeVi~sl~LPfalipLl~~ts~k~iMG~~-~n~~~~~~~~il~~i~~~lii~ln~~~ 237 (329)
+.|.--..+|-++.|+.|||--+-+.+-.+ -+++..- .+... +.+++.+.+++.+.+|...
T Consensus 76 ~s~p~ialimi~iAs~llP~PsLVIaYCl~-mqi~~~~~~~~~g---MsIvcv~~Si~ti~~~~~s 137 (189)
T PF05313_consen 76 TSTPLIALIMIIIASLLLPFPSLVIAYCLS-MQIYNPGANNNVG---MSIVCVIMSIITIIVNSVS 137 (189)
T ss_pred cCccHHHHHHHHHHHHHcCccHHHHHHHHH-heeecCCCcceeh---hHHHHHHHHHHHHHHHhhh
Confidence 344445567778889999985555444443 2333332 33444 6667766666666665544
No 16
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=43.57 E-value=81 Score=25.88 Aligned_cols=86 Identities=26% Similarity=0.335 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHhhhcccccccccCCChHHHHHHHhchhhhhHH------HHHhhhhhhccCCCC
Q 020216 11 EMLITVLVFIMAACFFGEMSYVKPPAADVLKGMFVPKLSGQGATGDAIALLGALVMPHN------LFLHSALVLSRKVPN 84 (329)
Q Consensus 11 E~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~Gl~vP~l~~~~~~~~avaiiGatImPhn------lflhSalV~~R~~~~ 84 (329)
|..+..+.+++.-+++.++..-|-.-.-+-|. -+.+.+++|++|.+++--| .+.-+......-...
T Consensus 4 ~~li~~i~fiiGs~~GL~ySYkKy~~P~v~k~--------iD~~ALv~aiiG~~~~~vn~~~~~~~~~ig~~li~~~~Gm 75 (99)
T PF09877_consen 4 ILLIYIILFIIGSFLGLEYSYKKYREPFVEKK--------IDKLALVLAIIGGLILAVNSPSSPILYTIGAFLIGFPLGM 75 (99)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchhhhc--------ccHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHhhhccC
Confidence 34455566777777888888777543333333 1467899999999966333 222222221111111
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHH
Q 020216 85 SVRGINDACRFFLIESGLALLVAFLIN 111 (329)
Q Consensus 85 ~~~~~~~a~~~~~iDs~ial~vs~lIn 111 (329)
+ -.|.|+|+.+|..+++++-
T Consensus 76 R-------PGYGr~E~~iG~iiA~l~~ 95 (99)
T PF09877_consen 76 R-------PGYGRIETVIGLIIALLIY 95 (99)
T ss_pred C-------CCCCeehhhhhHHHHHHHH
Confidence 1 1488999999998887753
No 17
>PRK03557 zinc transporter ZitB; Provisional
Probab=40.76 E-value=3.4e+02 Score=26.16 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 020216 6 QVRKLEMLITVLVFIMAACF 25 (329)
Q Consensus 6 ~yRklE~~~~~Lv~vm~l~F 25 (329)
+|.|+|.+..++.+++.+..
T Consensus 82 G~~r~E~l~al~~~~~l~~~ 101 (312)
T PRK03557 82 GWLRLTTLAAFVNAIALVVI 101 (312)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 48899998887766554433
No 18
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=39.38 E-value=1.6e+02 Score=24.68 Aligned_cols=29 Identities=24% Similarity=0.573 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 020216 258 FIGIIVFPLMAVYMIAVIYLTFRKDTVVTF 287 (329)
Q Consensus 258 ~~~~~~~~~~~~y~~~~~yl~~~~~~~~~~ 287 (329)
++|++.+ +=.+|-..++|.++|..+--+|
T Consensus 81 ilG~L~f-IPG~Y~~~i~y~a~rg~~Gysf 109 (115)
T PF05915_consen 81 ILGILCF-IPGFYHTRIAYYAWRGYKGYSF 109 (115)
T ss_pred HHHHHHH-hccHHHHHHHHHHHcCCCCCCH
Confidence 3444333 2357999999999998776654
No 19
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=37.57 E-value=1.9e+02 Score=25.03 Aligned_cols=106 Identities=12% Similarity=0.048 Sum_probs=54.8
Q ss_pred hHHHHHhhhhhhccCCCCCc--cchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccHHH
Q 020216 67 PHNLFLHSALVLSRKVPNSV--RGINDACRFFL--IESGLALLVAFLINVAVISVSGTVCSAANLSYDNKHQCSDITLNS 142 (329)
Q Consensus 67 PhnlflhSalV~~R~~~~~~--~~~~~a~~~~~--iDs~ial~vs~lIn~aI~ivaA~vl~~~g~~~~~~~~~~~~~l~~ 142 (329)
-|--|+.....++++-+.+. +++|+..+|.. .|--+.+++.|+....++-+--..++...+..--.+. +......
T Consensus 2 nh~kyqr~l~mke~~~~~e~KIrq~~rd~~y~~R~~~~Y~~LfiVFl~AG~vLw~vM~~iFd~CIDsWkAdp-eLnn~ry 80 (141)
T PRK13743 2 NHYKYQRPLSMKEKKNDAELKIRQTKRDYDYERRVSDIYFDLFIVFLTAGIVLWVIMHSIFDACIDSWKADP-ELNNFRY 80 (141)
T ss_pred chHHHHhHHHHhccCCChhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcCh-hhhhHHH
Confidence 35556656666666554432 24444555443 5666788877776666554433334333332111110 0112222
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhc
Q 020216 143 ASFLLQNVLGKSSKIVYAIALLASGQSSTITG 174 (329)
Q Consensus 143 a~~~L~~~~G~~a~~iFaiGLlaAG~sStitg 174 (329)
+=..|-- .=+++.+-+|.|.+.+|+++.+..
T Consensus 81 mWNilMY-aIPy~L~Ala~GFlv~~~~~p~~~ 111 (141)
T PRK13743 81 MWNILMY-VIPYTLWALAAGFLVAGVRNPLCE 111 (141)
T ss_pred HHHHHHH-HHHHHHHHHHhchhhhhhhhHHHH
Confidence 2222211 125678888999999998876643
No 20
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=35.66 E-value=3.7e+02 Score=30.96 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccc
Q 020216 259 IGIIVFPLMAVYMIAVIYLTFRKDTVVTF 287 (329)
Q Consensus 259 ~~~~~~~~~~~y~~~~~yl~~~~~~~~~~ 287 (329)
+..++..+..+-+++.+|..+|+.+....
T Consensus 204 ~~~~~~~~~~~~l~~a~~~l~r~~~~~~~ 232 (1094)
T PRK02983 204 VNALLGLFGAAALIAALIVLFRSQRADNA 232 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcC
Confidence 34444444446667888888988766554
No 21
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=35.40 E-value=5.3e+02 Score=26.78 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhcchhhHHHHH
Q 020216 141 NSASFLLQNVLGKSSKIVYAIALLASGQSSTITGTYAGQYIMQ 183 (329)
Q Consensus 141 ~~a~~~L~~~~G~~a~~iFaiGLlaAG~sStitgt~agq~vme 183 (329)
+-.-.+++..+|.+..++-+++++.=++||.+..-|-|+-.+|
T Consensus 337 ~ltq~A~~~~~g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~ 379 (452)
T COG1115 337 ALTQAAFSSHLGSWGSYFVAIALFLFAFTTILGWYYYGEKNIE 379 (452)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334569999999999999999999999999988888877665
No 22
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=33.40 E-value=4.6e+02 Score=26.41 Aligned_cols=34 Identities=24% Similarity=0.122 Sum_probs=25.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhhhcchhhH
Q 020216 146 LLQNVLGKSSKIVYAIALLASGQSSTITGTYAGQ 179 (329)
Q Consensus 146 ~L~~~~G~~a~~iFaiGLlaAG~sStitgt~agq 179 (329)
..+..-+++...++.++.+.+.+++.....+++.
T Consensus 279 ~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~s 312 (478)
T PF00324_consen 279 AAQYSGGPWLAWIVNAGILISAFSSANASLYAAS 312 (478)
T ss_pred hhhhcccccccceecccchhhhhhhhhhhhcccc
Confidence 3455556778888888888888888887776643
No 23
>TIGR00930 2a30 K-Cl cotransporter.
Probab=31.69 E-value=8.1e+02 Score=27.80 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhhhhhhhcchhhHHHHH
Q 020216 155 SKIVYAIALLASGQSSTITGTYAGQYIMQ 183 (329)
Q Consensus 155 a~~iFaiGLlaAG~sStitgt~agq~vme 183 (329)
...+..+|.+.+.++|.....+++.-+++
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~ 414 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQ 414 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888877766554443
No 24
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=31.35 E-value=6e+02 Score=26.20 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Q 020216 91 DACRFFLIESGLALLVAFLINVAVISVSGTVCSAANLSYDNKHQCSDITLNSASFLLQNVLGKSSKIVYAIALLASGQSS 170 (329)
Q Consensus 91 ~a~~~~~iDs~ial~vs~lIn~aI~ivaA~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~~G~~a~~iFaiGLlaAG~sS 170 (329)
|-.|+...-..++...-.+|-....-++|... ...+ +. +...+=.....+..+|++..+++++.++.|-+.+
T Consensus 223 ~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~--~~~~--~~----~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTT 294 (439)
T PRK15433 223 LLTRYTVWAGLMAGVGLTLLYLALFRLGSDSA--SLVD--QS----ANGAAILHAYVQHTFGGGGSFLLAALIFIACLVT 294 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cccc--CC----CcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666431 1111 11 0122334555678899999999999999999999
Q ss_pred hhhcchh-hHHHHH
Q 020216 171 TITGTYA-GQYIMQ 183 (329)
Q Consensus 171 titgt~a-gq~vme 183 (329)
++..+++ +++.-+
T Consensus 295 aIGLi~a~a~~f~~ 308 (439)
T PRK15433 295 AVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHHHHh
Confidence 9987776 344333
No 25
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=29.89 E-value=6e+02 Score=25.69 Aligned_cols=74 Identities=14% Similarity=0.142 Sum_probs=39.1
Q ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhcchhhHHHHH---------HHhhhhhHHHHHHHHHHhcCCCcCC
Q 020216 138 ITLNSASFLLQNVLGKSSKIVYAIALLASGQSSTITGTYAGQYIMQ---------MILSFELPFALIPLLKFSSSATKMG 208 (329)
Q Consensus 138 ~~l~~a~~~L~~~~G~~a~~iFaiGLlaAG~sStitgt~agq~vme---------Vi~sl~LPfalipLl~~ts~k~iMG 208 (329)
.++.+.+..|+.+.|++=+.+-=+-+.+-|+...+ -+++...++. ++.+..--|++++++++..-+-+.-
T Consensus 187 ~~l~~~~p~L~~~v~~~r~V~vNl~~~~l~l~tlv-~sLsl~m~~gNsF~v~~~~~v~~ai~~F~vl~ii~~i~~E~~L~ 265 (374)
T PF01528_consen 187 FQLPKIHPKLHRVVGPFRAVVVNLVLSLLGLETLV-FSLSLMMAIGNSFYVSVSDMVFGAINVFAVLSIIYLIVIEVVLA 265 (374)
T ss_pred hhhhhcChHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777788888776444333333333333322 2223222222 5555555677777777776555554
Q ss_pred CCCc
Q 020216 209 PHKN 212 (329)
Q Consensus 209 ~~~n 212 (329)
+|..
T Consensus 266 ~Yv~ 269 (374)
T PF01528_consen 266 RYVK 269 (374)
T ss_pred HHhh
Confidence 4443
No 26
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=27.75 E-value=4.5e+02 Score=23.64 Aligned_cols=17 Identities=12% Similarity=0.121 Sum_probs=7.9
Q ss_pred hhhhhHHHHHHHHHHhc
Q 020216 186 LSFELPFALIPLLKFSS 202 (329)
Q Consensus 186 ~sl~LPfalipLl~~ts 202 (329)
.++...++..-+.++..
T Consensus 119 ~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 119 VSIVGGLVFYFIFKYIY 135 (206)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444554543
No 27
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=27.62 E-value=89 Score=22.07 Aligned_cols=24 Identities=8% Similarity=0.303 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcc
Q 020216 258 FIGIIVFPLMAVYMIAVIYLTFRK 281 (329)
Q Consensus 258 ~~~~~~~~~~~~y~~~~~yl~~~~ 281 (329)
..++++++...+|+++++|=-.+-
T Consensus 8 iFsvvIil~If~~iGl~IyQkikq 31 (49)
T PF11044_consen 8 IFSVVIILGIFAWIGLSIYQKIKQ 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666678999999875553
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=27.22 E-value=6.5e+02 Score=25.30 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=17.1
Q ss_pred HHHHHhhhh-HHHHHHHHHHHHhhhhhhhhcchh
Q 020216 145 FLLQNVLGK-SSKIVYAIALLASGQSSTITGTYA 177 (329)
Q Consensus 145 ~~L~~~~G~-~a~~iFaiGLlaAG~sStitgt~a 177 (329)
+.+...+|. ++..++.+.++.+.+++.....++
T Consensus 293 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (482)
T TIGR00907 293 QIFYNALGNKAGAIFLLCLILVTSFFCAITCMTA 326 (482)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555665 555555555555555555544333
No 29
>COG4711 Predicted membrane protein [Function unknown]
Probab=26.60 E-value=2.2e+02 Score=26.56 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020216 94 RFFLIESGLALLVAFLINVAVISVSGTV 121 (329)
Q Consensus 94 ~~~~iDs~ial~vs~lIn~aI~ivaA~v 121 (329)
|-.-+|+..++.+.++...++.-.++..
T Consensus 28 r~~~~d~l~a~~~~~i~sa~~l~~~~~m 55 (217)
T COG4711 28 REAVIDTLEAMAIGFICSAAMLWLFGEM 55 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466899999999988887777666654
No 30
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=26.34 E-value=5.1e+02 Score=23.72 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHHHHHH
Q 020216 6 QVRKLEMLITVLVFIMA 22 (329)
Q Consensus 6 ~yRklE~~~~~Lv~vm~ 22 (329)
+|.|+|.+..++.++..
T Consensus 53 G~~r~E~l~~l~~~~~l 69 (268)
T TIGR01297 53 GHGRAEILAALLNGLFL 69 (268)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 48899998887766543
No 31
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=25.59 E-value=7.4e+02 Score=25.40 Aligned_cols=86 Identities=14% Similarity=0.203 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Q 020216 90 NDACRFFLIESGLALLVAFLINVAVISVSGTVCSAANLSYDNKHQCSDITLNSASFLLQNVLGKSSKIVYAIALLASGQS 169 (329)
Q Consensus 90 ~~a~~~~~iDs~ial~vs~lIn~aI~ivaA~vl~~~g~~~~~~~~~~~~~l~~a~~~L~~~~G~~a~~iFaiGLlaAG~s 169 (329)
||..|+...-..++...-.+|-....-++|..-.. .. ++. ...+-..+.-+..+|+.+..++++..+.|.+.
T Consensus 218 k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~--~~-~~~-----~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLT 289 (427)
T PF05525_consen 218 KEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGS--FP-DDI-----NGAELLSQIANHLFGSAGQILLGIIVFLACLT 289 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc--cc-CCC-----CHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence 45567777777788877788888888887754311 11 111 12233455557889999999999999999998
Q ss_pred hhhhcchh-hHHHHH
Q 020216 170 STITGTYA-GQYIMQ 183 (329)
Q Consensus 170 Stitgt~a-gq~vme 183 (329)
.++.-+-+ ++|.-|
T Consensus 290 TaIGL~~a~a~yf~~ 304 (427)
T PF05525_consen 290 TAIGLISACAEYFSE 304 (427)
T ss_pred HHHHHHHHHHHHHHH
Confidence 88875544 555555
No 32
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=25.38 E-value=5e+02 Score=27.44 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhhhhhhcchhhHHHHHHHhhhhhHHHH----HHHHHHhcCCCcCCCCC
Q 020216 155 SKIVYAIALLASGQSSTITGTYAGQYIMQMILSFELPFAL----IPLLKFSSSATKMGPHK 211 (329)
Q Consensus 155 a~~iFaiGLlaAG~sStitgt~agq~vmeVi~sl~LPfal----ipLl~~ts~k~iMG~~~ 211 (329)
+.+.++...+.-.+......-.+|+. .+-..+|+++ +..+.|+|-.+-|...|
T Consensus 314 ~~~~i~s~i~~l~~~~g~~se~~~~~----~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr 370 (518)
T KOG2568|consen 314 VIYFIASEILGLARVIGNISELSSLL----ILFAALPLAILDAAFIYWIFISLAKTLKKLR 370 (518)
T ss_pred HHHHHHHHHHHHHHHhcCcccccchh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333333333333332 3334445443 34566777666665443
No 33
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=24.94 E-value=7.1e+02 Score=24.95 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhcchh-hHHHHH
Q 020216 140 LNSASFLLQNVLGKSSKIVYAIALLASGQSSTITGTYA-GQYIMQ 183 (329)
Q Consensus 140 l~~a~~~L~~~~G~~a~~iFaiGLlaAG~sStitgt~a-gq~vme 183 (329)
.+-+.+.-+..+|+++..+.++..+.|.+.+.+.-+.+ ++|.-+
T Consensus 254 ~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~ 298 (378)
T TIGR00796 254 AQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHK 298 (378)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677888999999999999999998888765544 455444
No 34
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=24.37 E-value=6.5e+02 Score=24.30 Aligned_cols=90 Identities=14% Similarity=0.025 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhcccccccccCCChHHHHHHHhchhhhhHHHHHhhhhhhccCCCCC
Q 020216 6 QVRKLEMLITVLVFIMAACFFGEMSYVKPPAADVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPNS 85 (329)
Q Consensus 6 ~yRklE~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~Gl~vP~l~~~~~~~~avaiiGatImPhnlflhSalV~~R~~~~~ 85 (329)
++.|.|.+...+++++.+...++.+.. ..... +.|+-+....+...+++++..++-+...+.-...+ |. ++
T Consensus 76 Gh~k~E~l~sl~~~~~i~~~g~~i~~~--a~~~~----~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~k--k~-~S 146 (304)
T COG0053 76 GHGKAETLASLIVSILIFAAGFEILLE--AIKRL----ISPQPVEPPLLALGVALISIVIKEALYRYLRRVGK--KT-NS 146 (304)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHH----hCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-CC
Confidence 478999999987777655555444422 22222 23554444566778888888877665444332222 11 12
Q ss_pred ccchHHHHHHHHHHHHHHHH
Q 020216 86 VRGINDACRFFLIESGLALL 105 (329)
Q Consensus 86 ~~~~~~a~~~~~iDs~ial~ 105 (329)
. ..+.+-..++-|...++.
T Consensus 147 ~-aL~Ada~h~~sD~~ts~~ 165 (304)
T COG0053 147 Q-ALIADALHHRSDVLTSLA 165 (304)
T ss_pred H-HHHHHhHHHHHHHHHHHH
Confidence 1 233334456667776653
No 35
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.08 E-value=1.2e+02 Score=21.07 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhcccc
Q 020216 268 AVYMIAVIYLTFRKDT 283 (329)
Q Consensus 268 ~~y~~~~~yl~~~~~~ 283 (329)
+++++.+.|. ++|.+
T Consensus 20 ~~F~gi~~w~-~~~~~ 34 (49)
T PF05545_consen 20 VFFIGIVIWA-YRPRN 34 (49)
T ss_pred HHHHHHHHHH-Hcccc
Confidence 3444444444 45444
No 36
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=21.88 E-value=8.2e+02 Score=24.58 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhcchhh
Q 020216 143 ASFLLQNVLGKSSKIVYAIALLASGQSSTITGTYAG 178 (329)
Q Consensus 143 a~~~L~~~~G~~a~~iFaiGLlaAG~sStitgt~ag 178 (329)
....++..+|+++..+..++.+.+.+++....++++
T Consensus 266 ~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~ 301 (468)
T TIGR03810 266 MAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLP 301 (468)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999888998888888888887776665
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=21.14 E-value=8.1e+02 Score=24.23 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=7.6
Q ss_pred cchHHHHHHHHHH
Q 020216 5 GQVRKLEMLITVL 17 (329)
Q Consensus 5 g~yRklE~~~~~L 17 (329)
+.+.|+|.++..+
T Consensus 141 ~~~~~i~~~~~~~ 153 (442)
T TIGR00908 141 GEAAKLEFVVTAV 153 (442)
T ss_pred HHHHhHHHHHHHH
Confidence 3456677766643
No 38
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.67 E-value=1e+03 Score=28.28 Aligned_cols=163 Identities=12% Similarity=0.011 Sum_probs=0.0
Q ss_pred hccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccHHHH--HHHHHHhhhhHH
Q 020216 78 LSRKVPNSVRGINDACRFFLIESGLALLVAFLINVAVISVSGTVCSAANLSYDNKHQCSDITLNSA--SFLLQNVLGKSS 155 (329)
Q Consensus 78 ~~R~~~~~~~~~~~a~~~~~iDs~ial~vs~lIn~aI~ivaA~vl~~~g~~~~~~~~~~~~~l~~a--~~~L~~~~G~~a 155 (329)
++.+.++.....+...+....|....+++.+.+-+++-.++=... |-+..+. ..-..+..|..+
T Consensus 3 ~~~~e~~~~~~~~~~~~rrL~E~~gIlLlllAlfL~lALiSYsPs--------------DPSwS~sa~~~~V~Nl~GiVG 68 (1355)
T PRK10263 3 QEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPS--------------DPSWSQTAWHEPIHNLGGMPG 68 (1355)
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCcc--------------CCcccccCcccccccccchHH
Q ss_pred HHH--HHHHHHHhhhhhhhhcchhhHHHHHHHhhhhhHHHHHHHHHHhcCCCcCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 020216 156 KIV--YAIALLASGQSSTITGTYAGQYIMQMILSFELPFALIPLLKFSSSATKMGPHKNSIYVRLIIVISWILGLGIIGI 233 (329)
Q Consensus 156 ~~i--FaiGLlaAG~sStitgt~agq~vmeVi~sl~LPfalipLl~~ts~k~iMG~~~n~~~~~~~~il~~i~~~lii~l 233 (329)
.++ +..++|+.+ ++.+|+.++-..++.-+++.......... ...-.+.+.++++++
T Consensus 69 A~LAD~L~~LFGl~-------------------AYLLP~LL~~~a~~l~R~r~~~~~l~~~~---l~lRliGlLLLLLas 126 (1355)
T PRK10263 69 AWLADTLFFIFGVM-------------------AYTIPVIIVGGCWFAWRHQSSDEYIDYFA---VSLRIIGVLALILTS 126 (1355)
T ss_pred HHHHHHHHHHHhHH-------------------HHHHHHHHHHHHHHHHhccccchhhhhHH---HHHHHHHHHHHHHHH
Q ss_pred HHHHHH----------HHHHhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 020216 234 NIYYLS----------TGFVDWLIHNSLPKVGNVFIGIIVFPLMAVYMIAVIYL 277 (329)
Q Consensus 234 n~~~l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~yl 277 (329)
...... .-++|.+..+-+-.... ..|..++.++++-++++++.
T Consensus 127 ~gLaa~~~~d~~~~~gGGIIG~lLs~lL~~LfG-~vGa~LILLlllLIGLiLlT 179 (1355)
T PRK10263 127 CGLAAINADDIWYFASGGVIGSLLSTTLQPLLH-SSGGTIALLCVWAAGLTLFT 179 (1355)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHH
No 39
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.41 E-value=4.5e+02 Score=23.00 Aligned_cols=62 Identities=26% Similarity=0.318 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccccc
Q 020216 219 IIVISWILGLGIIGINIYYLSTGFVDWLIHNSLPKVGNVFIGIIVFPLMAVYMIAVIYLTFRKDTVVT 286 (329)
Q Consensus 219 ~~il~~i~~~lii~ln~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~yl~~~~~~~~~ 286 (329)
..++..++++++++..+-+++- +... ++......+++.+..+.++-++..+|....+.....
T Consensus 7 ~~i~~iilgilli~~gI~~Lv~-~~~~-----l~~~~s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~ 68 (191)
T PF04156_consen 7 ISIILIILGILLIASGIAALVL-FISG-----LGALISFILGIALLALGVVLLSLGLLCLLSKRPVQS 68 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 5666666666666666655432 2111 111222234444444444555555555555544443
No 40
>PRK12488 acetate permease; Provisional
Probab=20.19 E-value=7.4e+02 Score=25.84 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=10.4
Q ss_pred HHHHHHHhhhhhhhhcchhhH
Q 020216 159 YAIALLASGQSSTITGTYAGQ 179 (329)
Q Consensus 159 FaiGLlaAG~sStitgt~agq 179 (329)
+..|+++|+..|++.+|.+|.
T Consensus 354 ~l~GlvaA~~~AA~mST~ss~ 374 (549)
T PRK12488 354 LFLGFISAVAFATILAVVAGL 374 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345565555554444444443
Done!