Query 020216
Match_columns 329
No_of_seqs 250 out of 1253
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:33:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 78.2 45 0.0015 31.3 22.0 37 143-179 260-296 (444)
2 4djk_A Probable glutamate/gamm 63.3 1.1E+02 0.0036 29.3 23.0 25 153-177 287-311 (511)
3 3l1l_A Arginine/agmatine antip 52.7 1.5E+02 0.005 27.6 18.2 37 143-179 262-298 (445)
4 2jln_A MHP1; hydantoin, transp 39.6 2.8E+02 0.0095 27.0 21.8 16 6-21 163-178 (501)
5 3iyz_A Aquaporin-4; water tran 27.4 3.3E+02 0.011 25.7 9.8 20 176-195 173-192 (340)
6 1sy9_B Cyclic-nucleotide-gated 9.4 1.7E+02 0.006 16.9 1.8 16 2-17 2-17 (26)
7 2ks1_B Epidermal growth factor 7.3 4.9E+02 0.017 17.1 3.7 18 266-283 22-39 (44)
8 4hkr_A Calcium release-activat 7.3 8.8E+02 0.03 21.3 6.3 56 220-276 112-167 (214)
9 1k1f_A Breakpoint cluster regi 6.7 2E+02 0.0068 21.0 1.5 14 68-81 55-68 (72)
10 2a65_A Leutaa, Na(+):neurotran 6.5 1.7E+03 0.057 21.8 14.6 276 3-290 184-482 (519)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=78.25 E-value=45 Score=31.27 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=28.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhcchhhH
Q 020216 143 ASFLLQNVLGKSSKIVYAIALLASGQSSTITGTYAGQ 179 (329)
Q Consensus 143 a~~~L~~~~G~~a~~iFaiGLlaAG~sStitgt~agq 179 (329)
..+..++.+|++...+..++.+.+.+++..+..+++.
T Consensus 260 ~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~s 296 (444)
T 3gia_A 260 LAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGA 296 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888888888888877666643
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=63.29 E-value=1.1e+02 Score=29.27 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhcchh
Q 020216 153 KSSKIVYAIALLASGQSSTITGTYA 177 (329)
Q Consensus 153 ~~a~~iFaiGLlaAG~sStitgt~a 177 (329)
++...+..++.+.+.+++..+..++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (511)
T 4djk_A 287 EWTVRVISALLLLGVLAEIASWIVG 311 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777766666665544443
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=52.68 E-value=1.5e+02 Score=27.59 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhcchhhH
Q 020216 143 ASFLLQNVLGKSSKIVYAIALLASGQSSTITGTYAGQ 179 (329)
Q Consensus 143 a~~~L~~~~G~~a~~iFaiGLlaAG~sStitgt~agq 179 (329)
..+..+...|++...+..++.+.+.+++..+..+++.
T Consensus 262 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s 298 (445)
T 3l1l_A 262 FGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAG 298 (445)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777889998888899888888888777666543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=39.60 E-value=2.8e+02 Score=27.04 Aligned_cols=16 Identities=13% Similarity=0.356 Sum_probs=8.0
Q ss_pred chHHHHHHHHHHHHHH
Q 020216 6 QVRKLEMLITVLVFIM 21 (329)
Q Consensus 6 ~yRklE~~~~~Lv~vm 21 (329)
..+++|++...++.+.
T Consensus 163 ~i~~~~~~~~p~~~i~ 178 (501)
T 2jln_A 163 FIRWMNVFASPVLLAM 178 (501)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666655443333
No 5
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=27.38 E-value=3.3e+02 Score=25.75 Aligned_cols=20 Identities=20% Similarity=0.590 Sum_probs=13.2
Q ss_pred hhhHHHHHHHhhhhhHHHHH
Q 020216 176 YAGQYIMQMILSFELPFALI 195 (329)
Q Consensus 176 ~agq~vmeVi~sl~LPfali 195 (329)
....++.|++..+.|=+.+.
T Consensus 173 ~~~~f~~E~i~Tf~Lv~~Il 192 (340)
T 3iyz_A 173 AGHGLLVELIITFQLVFTIF 192 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567788888777766543
No 6
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=9.44 E-value=1.7e+02 Score=16.95 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=11.8
Q ss_pred ccccchHHHHHHHHHH
Q 020216 2 EGIGQVRKLEMLITVL 17 (329)
Q Consensus 2 ~~~g~yRklE~~~~~L 17 (329)
+.+|++|++-++.+++
T Consensus 2 qrrggfrri~rlvgv~ 17 (26)
T 1sy9_B 2 QRRGGFRRIARLVGVL 17 (26)
T ss_pred ccchhHHHHHHHHHHH
Confidence 4578899988877653
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.34 E-value=4.9e+02 Score=17.12 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhcccc
Q 020216 266 LMAVYMIAVIYLTFRKDT 283 (329)
Q Consensus 266 ~~~~y~~~~~yl~~~~~~ 283 (329)
+..+-+++..++.+|+.+
T Consensus 22 ~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 22 LLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhhhH
Confidence 333344455555555543
No 8
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=7.32 E-value=8.8e+02 Score=21.33 Aligned_cols=56 Identities=18% Similarity=0.507 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 020216 220 IVISWILGLGIIGINIYYLSTGFVDWLIHNSLPKVGNVFIGIIVFPLMAVYMIAVIY 276 (329)
Q Consensus 220 ~il~~i~~~lii~ln~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~y 276 (329)
.=.+|..+- .+++=++++--.++.|..-.+.+..+.+--.++++|..+.|+.|.+-
T Consensus 112 IE~AW~fST-~lGi~LFL~evall~WVKF~~~~~~aa~~~t~vliPv~i~F~~Fa~h 167 (214)
T 4hkr_A 112 IETAWAFST-LLGLILFLLEIAILCWVKFYDLSRRAAWSATVVLIPVMIIFMAFAIH 167 (214)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhheEEeecCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345676553 44444555444455665444444444444456668888888777643
No 9
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=6.73 E-value=2e+02 Score=20.98 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=11.6
Q ss_pred HHHHHhhhhhhccC
Q 020216 68 HNLFLHSALVLSRK 81 (329)
Q Consensus 68 hnlflhSalV~~R~ 81 (329)
|++|||+-|.++|+
T Consensus 55 rmIYLQTlLAkerk 68 (72)
T 1k1f_A 55 RMIYLQTLLAKEKK 68 (72)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHh
Confidence 78999999988875
No 10
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=6.51 E-value=1.7e+03 Score=21.84 Aligned_cols=276 Identities=10% Similarity=0.005 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhc--CCC----HHhhhcccccccccCCChHHHHHHHhchhhhhHHHHHhhhh
Q 020216 3 GIGQVRKLEMLITVLVFIMAACFFGEMSYV--KPP----AADVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSAL 76 (329)
Q Consensus 3 ~~g~yRklE~~~~~Lv~vm~l~F~~~~~~~--~Pd----~~~v~~Gl~vP~l~~~~~~~~avaiiGatImPhnlflhSal 76 (329)
.+|--|-.||+..++.....+.+++.++.. -|. ..|=++-++.|..+.=.....-++-.|=..--..+=...-.
T Consensus 184 ~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~i 263 (519)
T 2a65_A 184 IRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAII 263 (519)
T ss_dssp TTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHHHhHHh
Q ss_pred hhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CCCCccc-ccccHHHHHHHHHHh-hh
Q 020216 77 VLSRKVPNSVRGINDACRFFLIESGLALLVAFLINVAVISVSGTVCSAANLS--YDNKHQC-SDITLNSASFLLQNV-LG 152 (329)
Q Consensus 77 V~~R~~~~~~~~~~~a~~~~~iDs~ial~vs~lIn~aI~ivaA~vl~~~g~~--~~~~~~~-~~~~l~~a~~~L~~~-~G 152 (329)
.-.--.++++.-.|++......|+.++++.++.|-..+.-.+ .|.+ ++-.++. .........+++... .|
T Consensus 264 ty~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a------~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g 337 (519)
T 2a65_A 264 TYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAF------FGVANAVAIAKAGAFNLGFITLPAIFSQTAGG 337 (519)
T ss_dssp HHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH------HCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTH
T ss_pred hhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCcchHHHhcCCCCceeHHHHHHHHHhCCCc
Q ss_pred hHHHHHHHHHHHHhhhhhhhhcchhhHHHHH---------HHhhhhhHHHHHHHHHHhcC--CCcCCCCCchhhHHHHHH
Q 020216 153 KSSKIVYAIALLASGQSSTITGTYAGQYIMQ---------MILSFELPFALIPLLKFSSS--ATKMGPHKNSIYVRLIIV 221 (329)
Q Consensus 153 ~~a~~iFaiGLlaAG~sStitgt~agq~vme---------Vi~sl~LPfalipLl~~ts~--k~iMG~~~n~~~~~~~~i 221 (329)
+.-..+|-+-++.+|.+|.+...-.--...+ +...+.+-..++-+...++. =+.+..+.++..
T Consensus 338 ~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~~~~R~~~~~~v~~~~fllgl~~~~~~~g~~~~D~~~~~~~------ 411 (519)
T 2a65_A 338 TFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIG------ 411 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHH------
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHhHHH------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc--CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCC
Q 020216 222 ISWILGLGIIGINIYYLSTGFVDWLIH--NSLPKVGNVFIGIIVFPLMAVYMIAVIYLTFRKDTVVTFIDP 290 (329)
Q Consensus 222 l~~i~~~lii~ln~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~~yl~~~~~~~~~~~~~ 290 (329)
+.+...+-.+++.-.+=.+.+.+++.. ..-+..+.-++.-.+.|+.+..+......-..+.+...+.-|
T Consensus 412 l~~~~l~~~i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i~~~~~~~~~~~~y~~y~~~ 482 (519)
T 2a65_A 412 VVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWT 482 (519)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHSSCTT
T ss_pred HHHHHHHHHHhhheeeehhHHHHHHHcccCCchHHHHHHeEEehHHHHHHHHHHHHHHhCcCCCCCCccCc
Done!