Query 020216
Match_columns 329
No_of_seqs 250 out of 1253
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 13:33:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020216.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020216hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 55.5 74 0.0054 28.8 17.3 22 152-173 333-354 (509)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 13.9 3E+02 0.022 22.2 15.3 23 91-113 17-39 (447)
3 d1nekd_ f.21.2.2 (D:) Succinat 10.0 2.8E+02 0.02 19.4 9.7 97 176-279 10-111 (113)
4 d2yvxa3 f.57.1.1 (A:276-448) M 7.5 4.1E+02 0.03 20.3 6.4 89 9-113 10-98 (173)
5 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 5.9 1.1E+02 0.008 20.4 1.5 13 68-80 55-67 (67)
6 d1914a1 d.49.1.1 (A:4004-4081) 2.7 5.2E+02 0.038 17.4 3.0 19 4-22 53-71 (78)
7 d2ijra1 e.66.1.1 (A:3-282) Hyp 2.6 3.8E+02 0.028 22.4 2.7 25 65-90 98-122 (280)
8 d2hzaa1 a.43.1.3 (A:1-48) Nick 2.4 3.9E+02 0.029 16.3 1.8 25 75-99 18-42 (48)
9 d1r57a_ d.108.1.1 (A:) Hypothe 2.2 2.9E+02 0.021 18.9 1.1 22 23-44 75-96 (102)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.2 1.2E+03 0.086 18.4 5.4 9 272-280 72-80 (248)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=55.46 E-value=74 Score=28.77 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhh
Q 020216 152 GKSSKIVYAIALLASGQSSTIT 173 (329)
Q Consensus 152 G~~a~~iFaiGLlaAG~sStit 173 (329)
|+.=..+|-+.++.+|.+|.++
T Consensus 333 ~~~~~~lFF~~l~~~gl~s~i~ 354 (509)
T d2a65a1 333 GTFLGFLWFFLLFFAGLTSSIA 354 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhc
Confidence 4445567778888888888664
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=13.90 E-value=3e+02 Score=22.15 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020216 91 DACRFFLIESGLALLVAFLINVA 113 (329)
Q Consensus 91 ~a~~~~~iDs~ial~vs~lIn~a 113 (329)
+..|..|+-....++++..++..
T Consensus 17 ~~~~~~~w~i~~~~~~~~~~~~~ 39 (447)
T d1pw4a_ 17 PTYRRLRWQIFLGIFFGYAAYYL 39 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666665543
No 3
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=10.00 E-value=2.8e+02 Score=19.45 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=45.9
Q ss_pred hhhHHHHH-HHhhhhhHHHHHHHHHHhcCCCcCC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 020216 176 YAGQYIMQ-MILSFELPFALIPLLKFSSSATKMG----PHKNSIYVRLIIVISWILGLGIIGINIYYLSTGFVDWLIHNS 250 (329)
Q Consensus 176 ~agq~vme-Vi~sl~LPfalipLl~~ts~k~iMG----~~~n~~~~~~~~il~~i~~~lii~ln~~~l~~~~~~~~~~~~ 250 (329)
-..+|..| +-.-+.+|+.+..+..+.+....-= ++-++++ .+++. ++.++........-.+..+.|..|++
T Consensus 10 G~~~W~~qRvSAv~l~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~---~~il~-~l~l~~~~~H~~lGl~~IieDYi~~~ 85 (113)
T d1nekd_ 10 GVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAF---TKVFT-LLALFSILIHAWIGMWQVLTDYVKPL 85 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHSSHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhChH---HHHHH-HHHHHHHHHHHHHhHhhhHHHhcCCh
Confidence 34577877 3333444555554545543321100 1223344 34433 34555556666666677777777754
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 020216 251 LPKVGNVFIGIIVFPLMAVYMIAVIYLTF 279 (329)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~y~~~~~yl~~ 279 (329)
-- +-....+......++....++..|
T Consensus 86 ~~---r~~~~~~~~~~~~~~~~~~i~~lw 111 (113)
T d1nekd_ 86 AL---RLMLQLVIVVALVVYVIYGFVVVW 111 (113)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 222233333344455555555443
No 4
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=7.53 E-value=4.1e+02 Score=20.33 Aligned_cols=89 Identities=22% Similarity=0.239 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhcccccccccCCChHHHHHHHhchhhhhHHHHHhhhhhhccCCCCCccc
Q 020216 9 KLEMLITVLVFIMAACFFGEMSYVKPPAADVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRG 88 (329)
Q Consensus 9 klE~~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~Gl~vP~l~~~~~~~~avaiiGatImPhnlflhSalV~~R~~~~~~~~ 88 (329)
|+=.+...+++-+..+|+...+...-+.-.++.- |+|-+ +|+=| |.=-||+.+--|.....+-+
T Consensus 10 RlpWL~i~l~~~~~~a~ii~~Fe~~l~~~~~La~-fiPli---------~~~gG------N~G~Qs~ti~iR~La~g~i~ 73 (173)
T d2yvxa3 10 RVRWLVILILTGMVTSSILQGFESVLEAVTALAF-YVPVL---------LGTGG------NTGNQSATLIIRALATRDLD 73 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTTTTTTSCCC-CSHHH---------HHHHH------HHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---------hcCCc------hHHHHHHHHHHHHHhccccc
Confidence 4445566667777778887776544443222222 34432 22222 22335554433433222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 020216 89 INDACRFFLIESGLALLVAFLINVA 113 (329)
Q Consensus 89 ~~~a~~~~~iDs~ial~vs~lIn~a 113 (329)
.++..|..+.|..+|+..+.+....
T Consensus 74 ~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 74 LRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999988887665543
No 5
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.94 E-value=1.1e+02 Score=20.40 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=10.1
Q ss_pred HHHHHhhhhhhcc
Q 020216 68 HNLFLHSALVLSR 80 (329)
Q Consensus 68 hnlflhSalV~~R 80 (329)
|++|||+.|.++|
T Consensus 55 ~~iYLQt~LA~er 67 (67)
T d1k1fa_ 55 RMIYLQTLLAKEK 67 (67)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccC
Confidence 6788888887765
No 6
>d1914a1 d.49.1.1 (A:4004-4081) Signal recognition particle 9KDa protein, SRP9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.67 E-value=5.2e+02 Score=17.37 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=14.7
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 020216 4 IGQVRKLEMLITVLVFIMA 22 (329)
Q Consensus 4 ~g~yRklE~~~~~Lv~vm~ 22 (329)
....||+|++...+.-.|+
T Consensus 53 ~~dlkkiEkln~~lm~~m~ 71 (78)
T d1914a1 53 AQDVKKIEKFHSQLMRLMV 71 (78)
T ss_dssp GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3568999999998776664
No 7
>d2ijra1 e.66.1.1 (A:3-282) Hypothetical protein api92 {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=2.64 E-value=3.8e+02 Score=22.43 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=17.7
Q ss_pred hhhHHHHHhhhhhhccCCCCCccchH
Q 020216 65 VMPHNLFLHSALVLSRKVPNSVRGIN 90 (329)
Q Consensus 65 ImPhnlflhSalV~~R~~~~~~~~~~ 90 (329)
-+-|-+|+||++-+ |||+.-....|
T Consensus 98 ~~i~~l~~qsg~~~-~kWe~lp~~ar 122 (280)
T d2ijra1 98 RQIDRIYLQSGIAS-VKWETIPEGAR 122 (280)
T ss_dssp HHHHHHHHTTTGGG-CCTTSSCSHHH
T ss_pred HHHHHHHHhcCcce-eecccCCHHHH
Confidence 46799999999976 77866443333
No 8
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.36 E-value=3.9e+02 Score=16.26 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=15.0
Q ss_pred hhhhccCCCCCccchHHHHHHHHHH
Q 020216 75 ALVLSRKVPNSVRGINDACRFFLIE 99 (329)
Q Consensus 75 alV~~R~~~~~~~~~~~a~~~~~iD 99 (329)
.++++|+.+...+.+|++++-...+
T Consensus 18 ~~v~~~gy~nRSEaIRdliR~~l~~ 42 (48)
T d2hzaa1 18 SLSQRRGYNNRSEAIRDILRSALAQ 42 (48)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3567777765545667666655443
No 9
>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]}
Probab=2.23 E-value=2.9e+02 Score=18.92 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.0
Q ss_pred HHHHHHHhhcCCCHHhhhcccc
Q 020216 23 ACFFGEMSYVKPPAADVLKGMF 44 (329)
Q Consensus 23 l~F~~~~~~~~Pd~~~v~~Gl~ 44 (329)
.+|+..++.-+|++.+++.|+-
T Consensus 75 c~y~~~~~~k~pey~dv~~~~~ 96 (102)
T d1r57a_ 75 CSFAKHMLEKEDSYQDVYLGLE 96 (102)
T ss_dssp SHHHHHHHHHCGGGTTTBCCCC
T ss_pred cHhHHHHHHhCccHHHHhcCcc
Confidence 4688889999999999999963
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.22 E-value=1.2e+03 Score=18.41 Aligned_cols=9 Identities=22% Similarity=0.578 Sum_probs=4.9
Q ss_pred HHHHHHHhc
Q 020216 272 IAVIYLTFR 280 (329)
Q Consensus 272 ~~~~yl~~~ 280 (329)
.+.+|++++
T Consensus 72 ~yT~~iaFT 80 (248)
T d2r6gf1 72 VCTIAIAFT 80 (248)
T ss_dssp HHHHHGGGB
T ss_pred eeEEEEEEE
Confidence 344556665
Done!