Query 020217
Match_columns 329
No_of_seqs 267 out of 1421
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:58:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02237 glyceraldehyde-3-phos 100.0 4.4E-84 9.4E-89 643.4 25.4 291 3-302 1-292 (442)
2 PTZ00434 cytosolic glyceraldeh 100.0 5.9E-74 1.3E-78 559.3 20.3 216 85-301 2-231 (361)
3 PLN03096 glyceraldehyde-3-phos 100.0 2.1E-72 4.5E-77 554.9 23.7 256 35-296 13-269 (395)
4 PRK08289 glyceraldehyde-3-phos 100.0 2.9E-70 6.4E-75 546.6 20.8 244 50-301 97-351 (477)
5 PRK07403 glyceraldehyde-3-phos 100.0 6E-69 1.3E-73 521.7 21.0 210 87-297 2-212 (337)
6 COG0057 GapA Glyceraldehyde-3- 100.0 6.2E-69 1.3E-73 517.6 20.8 209 86-298 1-211 (335)
7 PRK15425 gapA glyceraldehyde-3 100.0 5.5E-67 1.2E-71 507.1 20.9 206 85-296 1-208 (331)
8 PRK07729 glyceraldehyde-3-phos 100.0 7.9E-67 1.7E-71 507.8 21.0 209 85-297 1-210 (343)
9 PTZ00023 glyceraldehyde-3-phos 100.0 1.1E-66 2.3E-71 506.1 20.9 207 85-296 1-212 (337)
10 PLN02272 glyceraldehyde-3-phos 100.0 2.7E-64 5.9E-69 500.1 25.6 206 87-297 86-294 (421)
11 TIGR01534 GAPDH-I glyceraldehy 100.0 6.5E-65 1.4E-69 492.1 20.5 206 88-296 1-209 (327)
12 PTZ00353 glycosomal glyceralde 100.0 6E-64 1.3E-68 487.5 20.6 206 85-297 1-213 (342)
13 PRK13535 erythrose 4-phosphate 100.0 9.6E-64 2.1E-68 485.4 20.8 208 87-297 2-212 (336)
14 PLN02358 glyceraldehyde-3-phos 100.0 4.8E-63 1E-67 480.9 21.9 208 85-297 4-215 (338)
15 PRK08955 glyceraldehyde-3-phos 100.0 6.4E-63 1.4E-67 479.3 21.5 207 85-296 1-209 (334)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 4.1E-61 8.9E-66 465.1 20.8 207 88-297 1-210 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 5.9E-52 1.3E-56 390.2 7.5 192 97-298 1-195 (285)
18 PF00044 Gp_dh_N: Glyceraldehy 100.0 2.5E-49 5.5E-54 346.4 12.0 150 87-240 1-151 (151)
19 smart00846 Gp_dh_N Glyceraldeh 100.0 1.4E-44 3.1E-49 315.1 16.7 149 87-240 1-149 (149)
20 TIGR01546 GAPDH-II_archae glyc 100.0 7.9E-42 1.7E-46 331.9 14.4 180 89-295 1-183 (333)
21 PRK04207 glyceraldehyde-3-phos 100.0 7.6E-34 1.6E-38 276.0 16.0 181 86-295 1-186 (341)
22 PRK14874 aspartate-semialdehyd 99.9 3.4E-26 7.5E-31 221.3 12.7 179 87-296 2-201 (334)
23 TIGR01296 asd_B aspartate-semi 99.9 7.4E-25 1.6E-29 213.0 14.2 177 88-295 1-203 (339)
24 PRK06901 aspartate-semialdehyd 99.9 1.3E-24 2.8E-29 210.5 13.0 157 86-274 3-164 (322)
25 TIGR01745 asd_gamma aspartate- 99.9 4.9E-22 1.1E-26 195.7 11.7 159 87-274 1-168 (366)
26 COG0136 Asd Aspartate-semialde 99.9 1E-21 2.3E-26 190.9 13.3 162 87-277 2-171 (334)
27 PRK08040 putative semialdehyde 99.8 2.5E-18 5.4E-23 167.9 15.7 159 85-274 3-166 (336)
28 PRK06728 aspartate-semialdehyd 99.8 2.4E-18 5.3E-23 168.7 14.7 158 86-274 5-166 (347)
29 PRK06598 aspartate-semialdehyd 99.8 2.4E-18 5.2E-23 169.9 12.6 160 87-274 2-169 (369)
30 PLN02383 aspartate semialdehyd 99.7 4.4E-17 9.5E-22 159.4 14.1 161 83-274 4-173 (344)
31 PRK08664 aspartate-semialdehyd 99.7 3.5E-17 7.6E-22 159.4 13.0 186 85-296 2-199 (349)
32 TIGR00978 asd_EA aspartate-sem 99.7 4E-17 8.7E-22 158.5 12.8 184 87-296 1-196 (341)
33 PRK05671 aspartate-semialdehyd 99.7 8.2E-17 1.8E-21 157.1 14.1 159 86-276 4-167 (336)
34 PF02800 Gp_dh_C: Glyceraldehy 99.6 1.3E-15 2.8E-20 134.3 4.0 54 245-298 1-55 (157)
35 PRK00436 argC N-acetyl-gamma-g 99.5 6.2E-14 1.4E-18 136.6 13.6 164 85-277 1-190 (343)
36 TIGR01850 argC N-acetyl-gamma- 99.5 2.6E-13 5.6E-18 132.6 11.4 164 87-277 1-190 (346)
37 PLN02968 Probable N-acetyl-gam 99.4 1.9E-12 4E-17 128.6 12.7 165 84-276 36-223 (381)
38 PRK11863 N-acetyl-gamma-glutam 99.4 1.4E-12 3.1E-17 126.6 11.6 145 85-274 1-153 (313)
39 PRK08300 acetaldehyde dehydrog 99.3 3.6E-12 7.8E-17 123.3 10.3 166 85-279 3-173 (302)
40 KOG4777 Aspartate-semialdehyde 99.3 2.6E-12 5.6E-17 122.2 5.5 167 88-274 5-187 (361)
41 TIGR01851 argC_other N-acetyl- 99.2 5.8E-11 1.3E-15 115.4 11.0 140 87-271 2-146 (310)
42 TIGR03215 ac_ald_DH_ac acetald 99.1 7.9E-10 1.7E-14 106.3 11.0 158 87-277 2-164 (285)
43 PF01118 Semialdhyde_dh: Semia 98.7 1.7E-08 3.6E-13 84.2 4.9 115 88-228 1-119 (121)
44 smart00859 Semialdhyde_dh Semi 97.8 8.5E-05 1.8E-09 61.5 7.0 113 88-227 1-120 (122)
45 COG0002 ArgC Acetylglutamate s 97.7 0.00014 3E-09 72.2 8.3 162 85-274 1-189 (349)
46 PRK13301 putative L-aspartate 97.7 9E-05 2E-09 71.2 6.7 92 85-207 1-93 (267)
47 PRK13303 L-aspartate dehydroge 97.3 0.00024 5.1E-09 67.3 4.5 91 87-209 2-93 (265)
48 PRK06270 homoserine dehydrogen 97.2 0.0014 2.9E-08 64.4 8.2 37 85-121 1-44 (341)
49 TIGR00036 dapB dihydrodipicoli 97.1 0.00073 1.6E-08 64.1 5.8 95 87-206 2-97 (266)
50 TIGR01921 DAP-DH diaminopimela 97.0 0.0018 3.9E-08 63.9 7.5 88 86-207 3-90 (324)
51 PRK13304 L-aspartate dehydroge 96.8 0.004 8.7E-08 59.0 7.6 92 87-209 2-93 (265)
52 PF01113 DapB_N: Dihydrodipico 96.8 0.00031 6.7E-09 59.3 0.1 33 87-121 1-34 (124)
53 COG1712 Predicted dinucleotide 96.7 0.0042 9.1E-08 59.0 6.5 92 87-208 1-92 (255)
54 PRK00048 dihydrodipicolinate r 96.7 0.0037 8E-08 58.9 6.2 86 86-203 1-87 (257)
55 PRK06392 homoserine dehydrogen 96.6 0.006 1.3E-07 60.0 7.3 35 87-121 1-40 (326)
56 PRK13302 putative L-aspartate 96.5 0.0068 1.5E-07 57.8 7.2 87 85-201 5-92 (271)
57 PRK08374 homoserine dehydrogen 96.5 0.0044 9.4E-08 60.9 5.5 37 85-121 1-44 (336)
58 COG0460 ThrA Homoserine dehydr 96.5 0.0059 1.3E-07 60.5 6.4 37 85-121 2-45 (333)
59 PRK06813 homoserine dehydrogen 96.2 0.0086 1.9E-07 59.5 5.8 37 85-121 1-44 (346)
60 PRK06349 homoserine dehydrogen 96.2 0.01 2.3E-07 60.0 6.4 93 86-208 3-103 (426)
61 PRK11579 putative oxidoreducta 95.9 0.036 7.7E-07 53.8 8.4 92 86-209 4-96 (346)
62 COG0289 DapB Dihydrodipicolina 95.8 0.04 8.6E-07 53.2 8.1 96 86-206 2-98 (266)
63 cd01076 NAD_bind_1_Glu_DH NAD( 95.8 0.16 3.4E-06 47.6 11.8 34 85-121 30-63 (227)
64 COG2344 AT-rich DNA-binding pr 95.7 0.022 4.8E-07 52.9 6.0 142 36-216 37-185 (211)
65 PF01408 GFO_IDH_MocA: Oxidore 95.7 0.02 4.4E-07 46.3 5.0 94 87-210 1-95 (120)
66 PF03447 NAD_binding_3: Homose 95.5 0.01 2.2E-07 48.8 2.4 87 93-208 1-89 (117)
67 COG4569 MhpF Acetaldehyde dehy 95.4 0.045 9.8E-07 51.8 6.8 75 176-255 71-145 (310)
68 cd05211 NAD_bind_Glu_Leu_Phe_V 95.0 0.26 5.6E-06 45.8 10.5 34 85-121 22-55 (217)
69 cd05313 NAD_bind_2_Glu_DH NAD( 94.6 0.37 8E-06 46.2 10.8 105 85-206 37-151 (254)
70 PRK05447 1-deoxy-D-xylulose 5- 94.5 0.14 3E-06 51.9 8.0 110 87-206 2-120 (385)
71 PRK09414 glutamate dehydrogena 94.4 0.23 5E-06 51.2 9.4 102 85-206 231-341 (445)
72 PF02826 2-Hacid_dh_C: D-isome 94.3 0.065 1.4E-06 47.5 4.7 33 86-121 36-68 (178)
73 PLN02477 glutamate dehydrogena 93.7 0.62 1.3E-05 47.6 10.9 34 85-121 205-238 (410)
74 PLN02700 homoserine dehydrogen 93.5 0.18 3.9E-06 50.9 6.7 37 85-121 2-44 (377)
75 PRK10206 putative oxidoreducta 93.4 0.16 3.5E-06 49.6 6.1 95 86-209 1-96 (344)
76 PRK05472 redox-sensing transcr 93.4 0.16 3.4E-06 46.4 5.5 96 86-209 84-179 (213)
77 PLN02696 1-deoxy-D-xylulose-5- 93.1 0.74 1.6E-05 47.7 10.4 111 85-206 56-178 (454)
78 COG0569 TrkA K+ transport syst 93.0 0.2 4.4E-06 46.5 5.8 98 87-210 1-102 (225)
79 PLN02775 Probable dihydrodipic 93.0 0.32 6.9E-06 47.5 7.2 34 85-121 10-44 (286)
80 PRK14030 glutamate dehydrogena 92.8 1.2 2.6E-05 46.0 11.4 125 56-206 207-341 (445)
81 PRK09466 metL bifunctional asp 92.7 0.09 1.9E-06 57.7 3.4 38 84-121 456-500 (810)
82 PRK09436 thrA bifunctional asp 92.6 0.14 3.1E-06 56.1 4.8 36 85-120 464-505 (819)
83 COG4091 Predicted homoserine d 92.4 0.17 3.7E-06 51.2 4.6 36 84-121 15-50 (438)
84 PRK08410 2-hydroxyacid dehydro 92.3 0.17 3.7E-06 49.2 4.4 32 86-120 145-176 (311)
85 PTZ00079 NADP-specific glutama 92.0 0.92 2E-05 47.0 9.4 123 55-203 215-348 (454)
86 PRK06487 glycerate dehydrogena 91.8 0.21 4.6E-06 48.7 4.4 31 87-120 149-179 (317)
87 PF03807 F420_oxidored: NADP o 91.5 0.37 8E-06 37.7 4.7 43 88-131 1-43 (96)
88 TIGR03736 PRTRC_ThiF PRTRC sys 91.3 0.45 9.7E-06 45.3 5.9 108 84-197 9-127 (244)
89 PRK06932 glycerate dehydrogena 91.1 0.28 6E-06 47.9 4.4 31 86-119 147-177 (314)
90 COG0673 MviM Predicted dehydro 90.7 0.89 1.9E-05 43.1 7.4 96 85-209 2-99 (342)
91 cd01075 NAD_bind_Leu_Phe_Val_D 90.4 1.4 3E-05 40.2 8.1 31 87-121 29-59 (200)
92 COG0111 SerA Phosphoglycerate 90.3 0.37 8E-06 47.5 4.5 32 86-120 142-173 (324)
93 PLN02928 oxidoreductase family 90.1 0.38 8.3E-06 47.6 4.5 31 87-120 160-190 (347)
94 PRK11790 D-3-phosphoglycerate 89.6 0.44 9.6E-06 48.2 4.6 31 86-119 151-181 (409)
95 PRK15409 bifunctional glyoxyla 89.5 0.45 9.8E-06 46.7 4.4 31 86-119 145-176 (323)
96 PRK06436 glycerate dehydrogena 89.5 0.48 1E-05 46.2 4.5 32 86-120 122-153 (303)
97 PRK13243 glyoxylate reductase; 89.3 0.49 1.1E-05 46.5 4.5 32 86-120 150-181 (333)
98 PRK07574 formate dehydrogenase 89.3 0.48 1E-05 47.9 4.5 31 87-120 193-223 (385)
99 TIGR02130 dapB_plant dihydrodi 88.9 0.95 2.1E-05 44.0 6.1 29 87-118 1-30 (275)
100 COG2910 Putative NADH-flavin r 88.6 1.8 3.8E-05 40.6 7.3 31 87-120 1-32 (211)
101 PRK15469 ghrA bifunctional gly 88.2 0.68 1.5E-05 45.2 4.6 31 87-120 137-167 (312)
102 PLN02306 hydroxypyruvate reduc 87.9 0.67 1.4E-05 46.8 4.5 31 86-119 165-196 (386)
103 COG1052 LdhA Lactate dehydroge 87.8 0.67 1.5E-05 45.8 4.4 32 86-120 146-177 (324)
104 PTZ00117 malate dehydrogenase; 87.6 3.2 7E-05 40.5 8.9 24 86-109 5-28 (319)
105 PRK08229 2-dehydropantoate 2-r 87.5 2.8 6.1E-05 40.2 8.4 33 85-120 1-33 (341)
106 PF03435 Saccharop_dh: Sacchar 87.4 0.45 9.8E-06 46.7 2.9 95 89-207 1-96 (386)
107 CHL00194 ycf39 Ycf39; Provisio 87.4 1.7 3.7E-05 41.3 6.7 31 87-120 1-32 (317)
108 PRK05476 S-adenosyl-L-homocyst 87.3 1.5 3.3E-05 45.0 6.7 30 87-119 213-242 (425)
109 PRK15438 erythronate-4-phospha 87.1 0.81 1.8E-05 46.2 4.5 31 86-119 116-146 (378)
110 PLN03139 formate dehydrogenase 87.0 0.76 1.6E-05 46.5 4.3 31 86-119 199-229 (386)
111 PF05368 NmrA: NmrA-like famil 86.9 0.26 5.7E-06 44.4 0.9 96 89-209 1-103 (233)
112 PRK12480 D-lactate dehydrogena 86.1 1.1 2.3E-05 44.2 4.6 30 87-119 147-176 (330)
113 PF03446 NAD_binding_2: NAD bi 86.1 1.3 2.7E-05 38.6 4.7 30 87-119 2-31 (163)
114 cd08230 glucose_DH Glucose deh 85.9 7.8 0.00017 37.2 10.5 142 87-255 174-316 (355)
115 KOG1502 Flavonol reductase/cin 85.8 3.7 8E-05 41.0 8.2 47 85-134 5-53 (327)
116 TIGR03649 ergot_EASG ergot alk 85.7 2.6 5.7E-05 39.0 6.9 29 88-119 1-30 (285)
117 COG1063 Tdh Threonine dehydrog 85.5 1.8 3.9E-05 42.5 6.0 101 88-210 171-272 (350)
118 PRK14031 glutamate dehydrogena 85.4 7 0.00015 40.5 10.3 125 56-207 207-341 (444)
119 PF02629 CoA_binding: CoA bind 84.2 1.1 2.4E-05 35.9 3.2 92 86-209 3-95 (96)
120 PLN02819 lysine-ketoglutarate 84.0 1.9 4.1E-05 48.9 6.0 93 86-202 569-674 (1042)
121 PLN00016 RNA-binding protein; 83.8 3.4 7.3E-05 40.4 7.0 33 85-120 51-88 (378)
122 PLN00106 malate dehydrogenase 83.8 7.6 0.00016 38.4 9.4 22 87-108 19-41 (323)
123 PRK11880 pyrroline-5-carboxyla 83.7 1.7 3.6E-05 40.4 4.6 24 85-108 1-24 (267)
124 TIGR01202 bchC 2-desacetyl-2-h 83.4 5 0.00011 38.0 7.8 22 87-108 146-167 (308)
125 PRK00257 erythronate-4-phospha 83.3 1.6 3.4E-05 44.2 4.5 31 86-119 116-146 (381)
126 TIGR01327 PGDH D-3-phosphoglyc 83.2 1.5 3.3E-05 45.8 4.5 31 87-120 139-169 (525)
127 PRK13581 D-3-phosphoglycerate 83.1 1.5 3.3E-05 45.7 4.5 32 86-120 140-171 (526)
128 PRK06522 2-dehydropantoate 2-r 83.0 5.5 0.00012 37.2 7.8 30 87-119 1-30 (304)
129 PF10727 Rossmann-like: Rossma 83.0 1.1 2.3E-05 38.7 2.8 34 85-121 9-42 (127)
130 PRK08306 dipicolinate synthase 82.8 2.1 4.6E-05 41.4 5.1 32 86-120 152-183 (296)
131 PF00056 Ldh_1_N: lactate/mala 82.3 1.9 4.2E-05 37.1 4.1 81 87-189 1-82 (141)
132 PF13380 CoA_binding_2: CoA bi 82.1 4.1 8.9E-05 34.0 6.0 82 88-208 2-87 (116)
133 cd01483 E1_enzyme_family Super 82.1 1.4 3E-05 37.3 3.1 21 88-108 1-21 (143)
134 PRK08605 D-lactate dehydrogena 82.0 1.9 4E-05 42.4 4.4 32 86-119 146-177 (332)
135 COG0039 Mdh Malate/lactate deh 81.9 3.7 8E-05 40.7 6.4 144 87-260 1-163 (313)
136 COG1748 LYS9 Saccharopine dehy 81.6 3.6 7.9E-05 41.9 6.4 98 87-207 2-99 (389)
137 PRK13403 ketol-acid reductoiso 81.4 2.1 4.5E-05 42.8 4.5 32 87-121 17-48 (335)
138 COG3804 Uncharacterized conser 81.4 2 4.3E-05 42.6 4.2 35 85-121 1-35 (350)
139 COG0771 MurD UDP-N-acetylmuram 81.0 7.8 0.00017 40.2 8.6 88 86-202 7-95 (448)
140 PTZ00082 L-lactate dehydrogena 80.8 3.3 7.2E-05 40.6 5.7 22 87-108 7-28 (321)
141 PRK11559 garR tartronate semia 79.9 2.6 5.5E-05 39.9 4.5 31 86-119 2-32 (296)
142 PRK07634 pyrroline-5-carboxyla 79.6 3.3 7.1E-05 37.8 4.9 35 86-120 4-39 (245)
143 PRK01438 murD UDP-N-acetylmura 77.3 19 0.00041 36.5 10.0 30 87-119 17-46 (480)
144 PLN02256 arogenate dehydrogena 77.3 3.7 7.9E-05 40.0 4.7 34 85-121 35-68 (304)
145 PRK07417 arogenate dehydrogena 77.2 3.3 7.2E-05 39.2 4.3 30 87-119 1-30 (279)
146 PRK06718 precorrin-2 dehydroge 77.1 28 0.00061 31.8 10.2 31 87-120 11-41 (202)
147 PLN02712 arogenate dehydrogena 77.0 3.5 7.6E-05 44.5 4.9 34 85-121 51-84 (667)
148 PRK09880 L-idonate 5-dehydroge 76.9 15 0.00032 35.2 8.7 94 87-206 171-265 (343)
149 PF02254 TrkA_N: TrkA-N domain 76.8 4.9 0.00011 32.2 4.7 29 89-120 1-29 (116)
150 PLN02712 arogenate dehydrogena 76.7 3.4 7.3E-05 44.7 4.7 34 85-121 368-401 (667)
151 PRK12475 thiamine/molybdopteri 76.6 2.2 4.7E-05 42.3 3.0 23 86-108 24-46 (338)
152 TIGR02853 spore_dpaA dipicolin 76.3 3.8 8.2E-05 39.6 4.5 31 87-120 152-182 (287)
153 cd05293 LDH_1 A subgroup of L- 76.0 5.1 0.00011 39.2 5.3 22 87-108 4-25 (312)
154 PRK06223 malate dehydrogenase; 75.8 6.8 0.00015 37.4 6.1 30 87-118 3-32 (307)
155 PLN02214 cinnamoyl-CoA reducta 75.5 14 0.0003 35.7 8.2 31 86-119 10-41 (342)
156 PLN02602 lactate dehydrogenase 75.2 5.9 0.00013 39.6 5.6 149 87-266 38-205 (350)
157 cd01338 MDH_choloroplast_like 74.9 8 0.00017 38.0 6.4 150 86-263 2-176 (322)
158 PTZ00075 Adenosylhomocysteinas 74.8 4.2 9.2E-05 42.5 4.7 31 86-119 254-284 (476)
159 TIGR01087 murD UDP-N-acetylmur 74.7 14 0.00031 36.8 8.3 84 88-201 1-87 (433)
160 PRK08507 prephenate dehydrogen 74.7 4.8 0.0001 37.8 4.7 32 87-119 1-32 (275)
161 COG0287 TyrA Prephenate dehydr 74.6 4.5 9.7E-05 39.2 4.5 32 86-118 3-34 (279)
162 TIGR03366 HpnZ_proposed putati 74.6 20 0.00044 33.3 8.8 137 87-254 122-260 (280)
163 KOG0069 Glyoxylate/hydroxypyru 74.5 2.6 5.7E-05 42.1 3.0 23 85-107 161-183 (336)
164 cd05291 HicDH_like L-2-hydroxy 74.3 5.5 0.00012 38.4 5.1 31 88-119 2-32 (306)
165 cd00755 YgdL_like Family of ac 73.7 4.5 9.8E-05 38.0 4.2 22 87-108 12-33 (231)
166 PRK14619 NAD(P)H-dependent gly 73.3 5.5 0.00012 38.2 4.8 32 86-120 4-35 (308)
167 PRK03369 murD UDP-N-acetylmura 73.0 16 0.00034 37.7 8.3 83 87-201 13-95 (488)
168 TIGR01019 sucCoAalpha succinyl 72.7 12 0.00026 36.5 6.9 32 87-120 7-39 (286)
169 COG0334 GdhA Glutamate dehydro 72.5 22 0.00047 36.7 9.0 34 85-121 206-239 (411)
170 PLN02688 pyrroline-5-carboxyla 72.5 6.9 0.00015 36.3 5.1 35 87-121 1-36 (266)
171 PRK05086 malate dehydrogenase; 72.2 15 0.00033 35.8 7.6 81 176-264 69-170 (312)
172 PRK06476 pyrroline-5-carboxyla 71.5 6.1 0.00013 36.8 4.5 22 87-108 1-22 (258)
173 COG1062 AdhC Zn-dependent alco 71.5 16 0.00035 37.0 7.7 98 87-207 187-285 (366)
174 PRK03659 glutathione-regulated 71.1 6 0.00013 42.0 4.8 38 86-128 400-437 (601)
175 PRK09599 6-phosphogluconate de 71.0 6.1 0.00013 37.8 4.5 31 87-120 1-31 (301)
176 PRK03562 glutathione-regulated 70.5 5.9 0.00013 42.3 4.7 37 86-127 400-436 (621)
177 PLN02494 adenosylhomocysteinas 70.5 6.1 0.00013 41.3 4.6 30 87-119 255-284 (477)
178 PLN02586 probable cinnamyl alc 69.6 19 0.00041 35.0 7.7 31 87-120 185-215 (360)
179 PRK00066 ldh L-lactate dehydro 69.2 29 0.00064 33.9 8.9 23 86-108 6-28 (315)
180 cd08239 THR_DH_like L-threonin 68.9 11 0.00024 35.6 5.7 137 87-254 165-302 (339)
181 PRK00421 murC UDP-N-acetylmura 68.8 25 0.00055 35.6 8.6 83 87-201 8-91 (461)
182 PF00208 ELFV_dehydrog: Glutam 68.7 6.8 0.00015 37.1 4.2 137 86-249 32-179 (244)
183 PF02670 DXP_reductoisom: 1-de 68.3 10 0.00022 33.0 4.9 42 89-131 1-43 (129)
184 TIGR01505 tartro_sem_red 2-hyd 68.3 6.4 0.00014 37.2 4.0 30 88-120 1-30 (291)
185 PRK12490 6-phosphogluconate de 68.0 7.7 0.00017 37.1 4.5 30 88-120 2-31 (299)
186 PRK09496 trkA potassium transp 67.8 7.7 0.00017 38.6 4.6 31 87-120 1-31 (453)
187 TIGR03201 dearomat_had 6-hydro 67.7 42 0.0009 32.2 9.5 30 87-119 168-197 (349)
188 PRK10669 putative cation:proto 67.7 7.6 0.00016 40.5 4.7 32 86-120 417-448 (558)
189 KOG2741 Dimeric dihydrodiol de 67.6 7.8 0.00017 39.1 4.5 42 84-126 4-45 (351)
190 PRK04690 murD UDP-N-acetylmura 67.5 23 0.0005 36.2 8.1 83 87-201 9-94 (468)
191 cd05290 LDH_3 A subgroup of L- 67.5 11 0.00023 37.0 5.4 22 88-109 1-22 (307)
192 KOG0068 D-3-phosphoglycerate d 67.4 5.7 0.00012 40.3 3.5 29 87-118 147-175 (406)
193 TIGR00872 gnd_rel 6-phosphoglu 67.1 8.1 0.00018 37.0 4.4 31 87-120 1-31 (298)
194 TIGR00936 ahcY adenosylhomocys 66.9 7.8 0.00017 39.7 4.5 30 87-119 196-225 (406)
195 PRK15116 sulfur acceptor prote 66.6 4.3 9.2E-05 39.2 2.4 24 86-109 30-53 (268)
196 PF03721 UDPG_MGDP_dh_N: UDP-g 66.6 8.4 0.00018 34.8 4.2 29 87-118 1-29 (185)
197 PF13460 NAD_binding_10: NADH( 66.6 9.9 0.00021 32.5 4.5 29 89-120 1-30 (183)
198 PRK00141 murD UDP-N-acetylmura 66.5 36 0.00079 34.8 9.3 83 87-201 16-99 (473)
199 cd00757 ThiF_MoeB_HesA_family 66.2 3.5 7.6E-05 38.0 1.7 22 87-108 22-43 (228)
200 PRK12491 pyrroline-5-carboxyla 66.2 9.9 0.00021 36.3 4.8 34 86-119 2-36 (272)
201 PRK05597 molybdopterin biosynt 66.2 5.2 0.00011 39.7 3.0 24 86-109 28-51 (355)
202 cd08281 liver_ADH_like1 Zinc-d 66.2 23 0.0005 34.3 7.5 98 87-208 193-291 (371)
203 cd08242 MDR_like Medium chain 66.0 34 0.00074 31.9 8.3 85 87-203 157-241 (319)
204 PF02774 Semialdhyde_dhC: Semi 65.7 3.4 7.4E-05 37.1 1.5 27 249-275 1-28 (184)
205 PRK12921 2-dehydropantoate 2-r 65.6 38 0.00082 31.8 8.6 22 87-108 1-22 (305)
206 PRK07502 cyclohexadienyl dehyd 65.2 11 0.00024 36.1 4.9 32 87-119 7-38 (307)
207 PRK08644 thiamine biosynthesis 64.4 3.4 7.3E-05 38.1 1.2 23 86-108 28-50 (212)
208 PRK14106 murD UDP-N-acetylmura 64.3 32 0.0007 34.3 8.3 88 87-201 6-93 (450)
209 cd05294 LDH-like_MDH_nadp A la 63.8 18 0.00039 35.2 6.2 31 87-118 1-32 (309)
210 PF02737 3HCDH_N: 3-hydroxyacy 62.5 13 0.00028 33.3 4.6 29 88-119 1-29 (180)
211 PRK05479 ketol-acid reductoiso 62.4 11 0.00024 37.5 4.5 31 87-120 18-48 (330)
212 TIGR02717 AcCoA-syn-alpha acet 62.2 23 0.0005 36.2 6.9 85 85-206 6-94 (447)
213 PRK06928 pyrroline-5-carboxyla 62.0 13 0.00029 35.2 4.8 34 87-120 2-36 (277)
214 PRK03803 murD UDP-N-acetylmura 61.2 55 0.0012 32.9 9.3 84 88-201 8-93 (448)
215 cd01486 Apg7 Apg7 is an E1-lik 61.1 4.4 9.5E-05 40.1 1.4 22 88-109 1-22 (307)
216 PRK05678 succinyl-CoA syntheta 60.0 25 0.00053 34.4 6.3 33 86-120 8-41 (291)
217 TIGR03026 NDP-sugDHase nucleot 59.9 12 0.00026 37.5 4.3 30 87-119 1-30 (411)
218 PRK01710 murD UDP-N-acetylmura 59.9 26 0.00056 35.6 6.7 23 87-109 15-37 (458)
219 PRK02006 murD UDP-N-acetylmura 59.9 62 0.0013 33.2 9.6 30 87-120 8-37 (498)
220 PRK02472 murD UDP-N-acetylmura 59.8 37 0.0008 33.9 7.8 85 87-201 6-93 (447)
221 COG1064 AdhP Zn-dependent alco 59.6 53 0.0011 33.1 8.7 165 87-293 168-335 (339)
222 cd08237 ribitol-5-phosphate_DH 59.6 65 0.0014 31.0 9.2 31 87-118 165-195 (341)
223 COG2085 Predicted dinucleotide 59.5 16 0.00034 34.5 4.7 38 87-128 2-39 (211)
224 PLN03209 translocon at the inn 59.4 40 0.00087 36.2 8.2 31 85-118 79-110 (576)
225 PRK07679 pyrroline-5-carboxyla 59.3 15 0.00033 34.7 4.7 33 87-119 4-37 (279)
226 PRK00094 gpsA NAD(P)H-dependen 58.6 16 0.00034 34.6 4.7 30 87-119 2-31 (325)
227 PRK06249 2-dehydropantoate 2-r 58.4 15 0.00032 35.3 4.5 24 85-108 4-27 (313)
228 PRK08818 prephenate dehydrogen 58.2 14 0.00031 37.2 4.5 31 86-118 4-35 (370)
229 PRK07680 late competence prote 57.7 21 0.00046 33.5 5.4 22 87-108 1-22 (273)
230 TIGR01915 npdG NADPH-dependent 57.7 18 0.00038 33.0 4.7 30 87-119 1-31 (219)
231 PLN02427 UDP-apiose/xylose syn 57.4 18 0.0004 35.2 5.1 34 85-120 13-47 (386)
232 PLN02545 3-hydroxybutyryl-CoA 57.3 16 0.00035 34.6 4.6 30 87-119 5-34 (295)
233 PRK11199 tyrA bifunctional cho 57.3 15 0.00033 36.6 4.6 32 85-119 97-129 (374)
234 TIGR00465 ilvC ketol-acid redu 57.3 15 0.00033 36.1 4.4 31 87-120 4-34 (314)
235 TIGR02356 adenyl_thiF thiazole 57.1 4 8.6E-05 37.2 0.3 23 87-109 22-44 (202)
236 cd08298 CAD2 Cinnamyl alcohol 57.0 59 0.0013 30.3 8.2 85 87-204 169-253 (329)
237 TIGR02355 moeB molybdopterin s 56.9 5 0.00011 37.7 1.0 22 87-108 25-46 (240)
238 PRK15059 tartronate semialdehy 56.7 16 0.00035 35.1 4.4 29 88-119 2-30 (292)
239 PRK15461 NADH-dependent gamma- 56.5 16 0.00034 35.0 4.4 31 87-120 2-32 (296)
240 PLN02178 cinnamyl-alcohol dehy 56.4 38 0.00083 33.4 7.1 133 87-254 180-313 (375)
241 PRK06545 prephenate dehydrogen 56.3 15 0.00033 36.2 4.3 30 88-118 2-31 (359)
242 COG0345 ProC Pyrroline-5-carbo 54.6 23 0.0005 34.3 5.1 43 87-131 2-45 (266)
243 PRK05442 malate dehydrogenase; 54.1 24 0.00053 34.8 5.3 153 85-265 3-180 (326)
244 cd05213 NAD_bind_Glutamyl_tRNA 54.1 14 0.00031 35.7 3.7 32 86-119 178-209 (311)
245 PRK14618 NAD(P)H-dependent gly 54.1 21 0.00046 34.4 4.8 31 87-120 5-35 (328)
246 cd08277 liver_alcohol_DH_like 54.1 58 0.0013 31.5 7.8 30 87-119 186-216 (365)
247 PRK03806 murD UDP-N-acetylmura 53.8 91 0.002 31.2 9.4 105 87-225 7-116 (438)
248 TIGR02818 adh_III_F_hyde S-(hy 53.7 69 0.0015 31.1 8.3 29 87-118 187-216 (368)
249 cd01487 E1_ThiF_like E1_ThiF_l 53.6 10 0.00022 33.8 2.4 21 88-108 1-21 (174)
250 cd05191 NAD_bind_amino_acid_DH 53.5 21 0.00046 27.7 3.9 22 87-108 24-45 (86)
251 PRK09496 trkA potassium transp 53.2 20 0.00043 35.7 4.6 32 86-120 231-262 (453)
252 PLN00141 Tic62-NAD(P)-related 52.8 25 0.00054 32.1 4.9 31 86-119 17-48 (251)
253 PTZ00431 pyrroline carboxylate 52.7 13 0.00029 34.8 3.1 22 87-108 4-25 (260)
254 PRK06129 3-hydroxyacyl-CoA deh 52.7 20 0.00044 34.4 4.4 31 87-120 3-33 (308)
255 PRK09260 3-hydroxybutyryl-CoA 52.6 21 0.00045 33.8 4.4 30 87-119 2-31 (288)
256 cd05283 CAD1 Cinnamyl alcohol 52.5 89 0.0019 29.6 8.7 87 87-201 171-257 (337)
257 TIGR00243 Dxr 1-deoxy-D-xylulo 52.1 24 0.00051 36.2 4.9 43 87-130 2-45 (389)
258 PLN02740 Alcohol dehydrogenase 52.0 30 0.00066 33.8 5.6 29 87-118 200-229 (381)
259 cd08294 leukotriene_B4_DH_like 51.9 54 0.0012 30.4 7.0 94 87-206 145-240 (329)
260 PRK06035 3-hydroxyacyl-CoA deh 51.8 23 0.00049 33.6 4.6 30 87-119 4-33 (291)
261 PRK06130 3-hydroxybutyryl-CoA 51.5 25 0.00054 33.5 4.8 30 87-119 5-34 (311)
262 cd08300 alcohol_DH_class_III c 50.5 86 0.0019 30.3 8.4 29 87-118 188-217 (368)
263 cd08301 alcohol_DH_plants Plan 49.2 38 0.00081 32.7 5.7 30 87-119 189-219 (369)
264 PRK04308 murD UDP-N-acetylmura 49.1 96 0.0021 31.2 8.8 86 87-201 6-92 (445)
265 PRK06444 prephenate dehydrogen 49.0 16 0.00034 33.7 2.9 22 87-108 1-23 (197)
266 cd00401 AdoHcyase S-adenosyl-L 48.9 26 0.00055 36.0 4.7 29 87-118 203-231 (413)
267 PRK05808 3-hydroxybutyryl-CoA 48.9 26 0.00056 33.0 4.4 30 87-119 4-33 (282)
268 cd01484 E1-2_like Ubiquitin ac 48.8 6.2 0.00013 37.2 0.2 22 88-109 1-22 (234)
269 PF01262 AlaDh_PNT_C: Alanine 48.8 32 0.0007 30.1 4.7 34 84-120 18-51 (168)
270 PRK05865 hypothetical protein; 48.7 59 0.0013 36.5 7.7 31 87-120 1-32 (854)
271 TIGR01761 thiaz-red thiazoliny 48.6 31 0.00066 34.5 5.1 39 86-127 3-41 (343)
272 TIGR03451 mycoS_dep_FDH mycoth 48.6 75 0.0016 30.5 7.7 30 87-119 178-208 (358)
273 PRK05690 molybdopterin biosynt 48.2 7.8 0.00017 36.5 0.8 23 86-108 32-54 (245)
274 PF00670 AdoHcyase_NAD: S-aden 47.8 29 0.00064 31.3 4.4 22 87-108 24-45 (162)
275 cd08235 iditol_2_DH_like L-idi 47.5 1.5E+02 0.0033 27.8 9.3 97 87-207 167-265 (343)
276 PLN02514 cinnamyl-alcohol dehy 47.4 70 0.0015 30.9 7.3 137 87-259 182-319 (357)
277 PRK04663 murD UDP-N-acetylmura 47.0 1.3E+02 0.0028 30.3 9.4 85 87-201 8-93 (438)
278 COG0743 Dxr 1-deoxy-D-xylulose 47.0 30 0.00066 35.3 4.7 44 87-131 2-46 (385)
279 TIGR00518 alaDH alanine dehydr 46.9 29 0.00062 34.7 4.6 32 86-120 167-198 (370)
280 TIGR01035 hemA glutamyl-tRNA r 46.8 28 0.00062 35.2 4.6 32 87-120 181-212 (417)
281 TIGR01759 MalateDH-SF1 malate 46.5 40 0.00086 33.3 5.4 151 85-263 2-177 (323)
282 PF00070 Pyr_redox: Pyridine n 46.4 36 0.00077 25.8 4.1 22 88-109 1-22 (80)
283 PRK11064 wecC UDP-N-acetyl-D-m 46.3 28 0.00062 35.2 4.5 30 87-119 4-33 (415)
284 PRK07530 3-hydroxybutyryl-CoA 46.2 33 0.00071 32.5 4.7 30 87-119 5-34 (292)
285 KOG2250 Glutamate/leucine/phen 46.2 1.6E+02 0.0034 31.4 9.8 57 55-121 227-283 (514)
286 PRK12771 putative glutamate sy 46.0 8.2 0.00018 40.2 0.6 30 87-119 138-167 (564)
287 COG0702 Predicted nucleoside-d 45.9 30 0.00065 31.1 4.2 31 87-120 1-32 (275)
288 PRK08655 prephenate dehydrogen 45.9 30 0.00064 35.4 4.6 30 87-119 1-31 (437)
289 cd08269 Zn_ADH9 Alcohol dehydr 45.7 95 0.0021 28.4 7.5 31 87-120 131-162 (312)
290 PRK07531 bifunctional 3-hydrox 45.6 30 0.00066 35.8 4.7 30 87-119 5-34 (495)
291 COG1179 Dinucleotide-utilizing 45.6 20 0.00043 34.9 3.1 114 87-207 31-152 (263)
292 cd08233 butanediol_DH_like (2R 45.2 77 0.0017 30.1 7.1 30 87-119 174-204 (351)
293 PLN02778 3,5-epimerase/4-reduc 45.2 25 0.00054 33.5 3.7 27 83-109 6-33 (298)
294 PF04321 RmlD_sub_bind: RmlD s 45.2 37 0.0008 32.2 4.8 31 87-120 1-32 (286)
295 PLN02827 Alcohol dehydrogenase 45.1 92 0.002 30.5 7.8 22 87-108 195-216 (378)
296 PRK10309 galactitol-1-phosphat 45.0 92 0.002 29.6 7.6 22 87-108 162-183 (347)
297 PRK02705 murD UDP-N-acetylmura 44.8 49 0.0011 33.2 5.9 28 88-118 2-29 (459)
298 PLN02166 dTDP-glucose 4,6-dehy 44.6 35 0.00077 34.7 4.9 34 84-120 118-152 (436)
299 TIGR01757 Malate-DH_plant mala 44.6 41 0.00089 34.3 5.3 25 85-109 43-68 (387)
300 PRK14573 bifunctional D-alanyl 43.8 1.2E+02 0.0025 33.5 9.0 30 88-121 6-36 (809)
301 PRK15182 Vi polysaccharide bio 43.6 30 0.00066 35.3 4.2 31 86-120 6-36 (425)
302 PRK09424 pntA NAD(P) transhydr 43.5 2E+02 0.0043 30.5 10.3 24 85-108 164-187 (509)
303 TIGR02441 fa_ox_alpha_mit fatt 43.5 47 0.001 36.4 5.9 31 85-118 334-364 (737)
304 PRK11154 fadJ multifunctional 43.4 26 0.00057 38.1 3.9 32 85-118 308-339 (708)
305 PRK07878 molybdopterin biosynt 43.3 27 0.00058 35.2 3.8 23 86-108 42-64 (392)
306 cd01336 MDH_cytoplasmic_cytoso 42.7 43 0.00094 32.9 5.0 24 85-108 1-25 (325)
307 cd08245 CAD Cinnamyl alcohol d 42.6 97 0.0021 28.9 7.2 31 87-120 164-194 (330)
308 COG5322 Predicted dehydrogenas 42.6 1E+02 0.0022 30.8 7.4 63 177-244 231-293 (351)
309 PF01488 Shikimate_DH: Shikima 42.5 38 0.00082 28.6 4.1 94 87-208 13-108 (135)
310 PRK00683 murD UDP-N-acetylmura 42.3 34 0.00074 34.2 4.3 82 87-202 4-85 (418)
311 cd01065 NAD_bind_Shikimate_DH 42.3 29 0.00063 29.0 3.3 23 86-108 19-41 (155)
312 PRK15057 UDP-glucose 6-dehydro 42.0 34 0.00074 34.5 4.3 39 87-131 1-39 (388)
313 PLN00112 malate dehydrogenase 41.7 18 0.00038 37.6 2.2 24 85-108 99-123 (444)
314 PF02558 ApbA: Ketopantoate re 41.7 36 0.00079 28.4 3.8 29 89-120 1-29 (151)
315 TIGR01381 E1_like_apg7 E1-like 41.6 13 0.00028 40.5 1.3 24 86-109 338-361 (664)
316 PTZ00142 6-phosphogluconate de 41.2 33 0.00071 35.7 4.1 31 87-120 2-32 (470)
317 PRK07877 hypothetical protein; 40.9 14 0.00031 40.5 1.5 108 86-202 107-223 (722)
318 KOG1203 Predicted dehydrogenas 40.8 61 0.0013 33.5 5.9 26 84-109 77-103 (411)
319 TIGR00873 gnd 6-phosphoglucona 40.7 31 0.00067 35.8 3.8 30 88-120 1-30 (467)
320 TIGR02440 FadJ fatty oxidation 40.6 14 0.00031 40.0 1.4 31 86-118 304-334 (699)
321 PLN02572 UDP-sulfoquinovose sy 40.5 52 0.0011 33.4 5.4 32 85-119 46-78 (442)
322 PTZ00357 methyltransferase; Pr 40.4 78 0.0017 35.5 6.8 103 85-198 700-815 (1072)
323 PRK05708 2-dehydropantoate 2-r 40.0 43 0.00092 32.3 4.5 22 86-107 2-23 (305)
324 PLN02206 UDP-glucuronate decar 40.0 43 0.00092 34.2 4.7 32 85-119 118-150 (442)
325 cd08262 Zn_ADH8 Alcohol dehydr 40.0 1.5E+02 0.0032 27.9 8.0 22 87-108 163-184 (341)
326 PRK11908 NAD-dependent epimera 39.8 46 0.001 31.8 4.7 31 87-119 2-33 (347)
327 PRK08762 molybdopterin biosynt 39.8 12 0.00026 37.3 0.6 23 86-108 135-157 (376)
328 cd08231 MDR_TM0436_like Hypoth 39.7 1.4E+02 0.003 28.6 7.9 30 87-119 179-209 (361)
329 cd01339 LDH-like_MDH L-lactate 39.6 56 0.0012 31.3 5.2 28 89-118 1-28 (300)
330 PRK07819 3-hydroxybutyryl-CoA 39.3 46 0.001 31.9 4.6 151 87-258 6-180 (286)
331 TIGR00507 aroE shikimate 5-deh 39.3 1.2E+02 0.0025 28.6 7.2 31 87-120 118-148 (270)
332 TIGR02437 FadB fatty oxidation 39.1 33 0.00071 37.5 3.9 31 85-118 312-342 (714)
333 KOG2380 Prephenate dehydrogena 39.0 29 0.00063 35.6 3.2 24 85-108 51-74 (480)
334 PRK07066 3-hydroxybutyryl-CoA 38.9 46 0.001 32.9 4.6 29 87-118 8-36 (321)
335 cd05188 MDR Medium chain reduc 38.7 2.3E+02 0.0049 24.9 8.6 30 87-119 136-165 (271)
336 PRK10675 UDP-galactose-4-epime 38.6 49 0.0011 31.1 4.6 30 87-119 1-31 (338)
337 PLN02350 phosphogluconate dehy 38.4 36 0.00079 35.7 3.9 31 87-120 7-37 (493)
338 cd08278 benzyl_alcohol_DH Benz 38.2 1.4E+02 0.0031 28.8 7.8 96 87-206 188-284 (365)
339 PRK08293 3-hydroxybutyryl-CoA 38.1 51 0.0011 31.2 4.6 29 87-118 4-32 (287)
340 PRK05600 thiamine biosynthesis 38.1 13 0.00028 37.3 0.6 23 86-108 41-63 (370)
341 PLN03154 putative allyl alcoho 38.0 1.4E+02 0.003 28.9 7.7 30 87-119 160-190 (348)
342 PRK06719 precorrin-2 dehydroge 37.8 57 0.0012 28.6 4.6 30 87-119 14-43 (157)
343 cd08254 hydroxyacyl_CoA_DH 6-h 37.6 1.9E+02 0.0042 26.7 8.4 96 87-206 167-262 (338)
344 PLN02695 GDP-D-mannose-3',5'-e 37.6 53 0.0011 32.3 4.8 32 85-119 20-52 (370)
345 COG1023 Gnd Predicted 6-phosph 37.5 35 0.00075 33.5 3.3 42 87-133 1-42 (300)
346 cd08295 double_bond_reductase_ 37.3 1.6E+02 0.0034 27.9 7.8 30 87-119 153-183 (338)
347 PRK08219 short chain dehydroge 37.2 50 0.0011 28.8 4.1 30 87-120 4-34 (227)
348 PRK14192 bifunctional 5,10-met 36.9 1.3E+02 0.0029 29.1 7.4 22 87-108 160-182 (283)
349 cd08296 CAD_like Cinnamyl alco 36.9 88 0.0019 29.6 6.0 95 87-207 165-259 (333)
350 cd08255 2-desacetyl-2-hydroxye 36.8 1.8E+02 0.0038 26.4 7.8 30 87-119 99-129 (277)
351 cd05280 MDR_yhdh_yhfp Yhdh and 36.7 1.4E+02 0.0031 27.4 7.3 88 88-201 149-237 (325)
352 PF00899 ThiF: ThiF family; I 36.6 38 0.00082 28.3 3.1 105 87-197 3-113 (135)
353 cd05292 LDH_2 A subgroup of L- 36.6 55 0.0012 31.7 4.6 22 87-108 1-22 (308)
354 cd08238 sorbose_phosphate_red 36.5 1.8E+02 0.004 28.8 8.4 34 175-208 256-289 (410)
355 cd08284 FDH_like_2 Glutathione 36.2 1.7E+02 0.0036 27.5 7.7 29 87-118 169-198 (344)
356 TIGR02819 fdhA_non_GSH formald 36.2 1.6E+02 0.0034 29.4 7.9 32 87-121 187-218 (393)
357 PLN02657 3,8-divinyl protochlo 36.1 59 0.0013 32.4 4.9 31 86-119 60-91 (390)
358 PRK15181 Vi polysaccharide bio 36.1 54 0.0012 31.6 4.5 31 87-120 16-47 (348)
359 cd05279 Zn_ADH1 Liver alcohol 35.9 1.1E+02 0.0024 29.5 6.6 22 87-108 185-206 (365)
360 cd08270 MDR4 Medium chain dehy 35.8 3.3E+02 0.0071 24.8 9.5 88 87-207 134-222 (305)
361 PRK02318 mannitol-1-phosphate 35.4 34 0.00074 34.1 3.1 31 87-119 1-31 (381)
362 PRK08223 hypothetical protein; 35.4 19 0.00042 35.2 1.3 97 86-187 27-128 (287)
363 cd08263 Zn_ADH10 Alcohol dehyd 35.3 2.2E+02 0.0048 27.3 8.6 30 87-119 189-219 (367)
364 cd08258 Zn_ADH4 Alcohol dehydr 35.0 3.7E+02 0.0081 25.1 9.9 139 87-254 166-305 (306)
365 PRK07411 hypothetical protein; 34.8 17 0.00036 36.7 0.8 183 86-277 38-245 (390)
366 KOG0024 Sorbitol dehydrogenase 34.7 43 0.00094 33.9 3.6 33 176-210 242-275 (354)
367 PRK00045 hemA glutamyl-tRNA re 34.6 46 0.001 33.7 3.9 31 87-120 183-214 (423)
368 PF01370 Epimerase: NAD depend 34.1 76 0.0016 27.7 4.8 30 89-121 1-31 (236)
369 PLN02896 cinnamyl-alcohol dehy 33.9 76 0.0016 30.5 5.1 31 86-119 10-41 (353)
370 cd08260 Zn_ADH6 Alcohol dehydr 33.9 1.3E+02 0.0029 28.3 6.7 31 87-120 167-197 (345)
371 PRK06988 putative formyltransf 33.5 60 0.0013 31.7 4.4 31 85-118 1-31 (312)
372 PRK14851 hypothetical protein; 33.5 14 0.00031 40.2 0.1 97 86-187 43-144 (679)
373 cd08289 MDR_yhfp_like Yhfp put 33.3 1.3E+02 0.0027 28.0 6.3 96 87-208 148-244 (326)
374 cd00650 LDH_MDH_like NAD-depen 33.3 85 0.0018 29.4 5.2 20 89-108 1-21 (263)
375 TIGR01181 dTDP_gluc_dehyt dTDP 33.2 61 0.0013 29.7 4.2 31 88-119 1-32 (317)
376 cd08234 threonine_DH_like L-th 32.9 1.2E+02 0.0025 28.3 6.1 95 87-206 161-256 (334)
377 cd08236 sugar_DH NAD(P)-depend 32.9 2.3E+02 0.0049 26.6 8.1 31 87-120 161-192 (343)
378 cd05288 PGDH Prostaglandin deh 32.8 1.7E+02 0.0037 27.1 7.1 30 87-119 147-177 (329)
379 PRK07326 short chain dehydroge 32.6 73 0.0016 28.1 4.5 30 87-119 7-37 (237)
380 PRK08017 oxidoreductase; Provi 32.4 77 0.0017 28.3 4.6 31 87-120 3-34 (256)
381 TIGR02825 B4_12hDH leukotriene 32.4 2.1E+02 0.0045 26.9 7.7 31 87-120 140-171 (325)
382 TIGR01470 cysG_Nterm siroheme 32.1 1.7E+02 0.0037 26.8 6.9 30 87-119 10-39 (205)
383 PRK10083 putative oxidoreducta 32.1 1.6E+02 0.0035 27.6 6.9 21 87-107 162-182 (339)
384 PLN02260 probable rhamnose bio 31.9 69 0.0015 34.0 4.8 25 84-108 378-403 (668)
385 PLN02353 probable UDP-glucose 31.9 69 0.0015 33.4 4.7 32 87-119 2-33 (473)
386 cd08285 NADP_ADH NADP(H)-depen 31.5 2.1E+02 0.0045 27.2 7.6 22 87-108 168-189 (351)
387 TIGR01214 rmlD dTDP-4-dehydror 31.4 70 0.0015 29.3 4.2 30 88-120 1-31 (287)
388 PRK09291 short chain dehydroge 31.2 82 0.0018 28.1 4.6 30 87-119 3-33 (257)
389 cd00300 LDH_like L-lactate deh 31.2 97 0.0021 29.9 5.3 20 89-108 1-20 (300)
390 PRK06046 alanine dehydrogenase 31.0 84 0.0018 30.7 4.9 34 86-121 129-162 (326)
391 PRK14806 bifunctional cyclohex 30.9 68 0.0015 34.5 4.6 32 87-119 4-35 (735)
392 PLN02260 probable rhamnose bio 30.8 72 0.0016 33.9 4.8 35 85-120 5-40 (668)
393 TIGR03466 HpnA hopanoid-associ 30.3 74 0.0016 29.4 4.3 30 88-120 2-32 (328)
394 TIGR01772 MDH_euk_gproteo mala 30.3 64 0.0014 31.7 4.0 21 88-108 1-22 (312)
395 PLN02240 UDP-glucose 4-epimera 30.1 86 0.0019 29.7 4.8 30 87-119 6-36 (352)
396 PRK03815 murD UDP-N-acetylmura 30.0 62 0.0014 32.7 4.0 22 87-109 1-22 (401)
397 PLN02583 cinnamoyl-CoA reducta 30.0 88 0.0019 29.4 4.8 30 87-119 7-37 (297)
398 PRK10537 voltage-gated potassi 29.7 75 0.0016 32.3 4.5 30 87-119 241-270 (393)
399 COG0451 WcaG Nucleoside-diphos 28.8 84 0.0018 28.8 4.3 30 88-120 2-32 (314)
400 KOG1399 Flavin-containing mono 28.8 74 0.0016 33.1 4.3 32 85-119 5-36 (448)
401 cd01080 NAD_bind_m-THF_DH_Cycl 28.5 1.2E+02 0.0026 27.1 5.1 32 87-121 45-77 (168)
402 PLN02702 L-idonate 5-dehydroge 28.5 1.1E+02 0.0024 29.4 5.2 31 176-206 254-284 (364)
403 PRK12745 3-ketoacyl-(acyl-carr 28.2 99 0.0022 27.6 4.6 30 87-119 3-33 (256)
404 KOG0405 Pyridine nucleotide-di 28.2 15 0.00033 37.8 -0.8 25 84-108 187-211 (478)
405 PLN00198 anthocyanidin reducta 28.0 87 0.0019 29.7 4.4 30 86-118 9-39 (338)
406 PRK15076 alpha-galactosidase; 27.9 54 0.0012 33.6 3.1 13 87-99 2-14 (431)
407 cd08232 idonate-5-DH L-idonate 27.7 3.5E+02 0.0077 25.3 8.4 29 87-118 167-196 (339)
408 PF00107 ADH_zinc_N: Zinc-bind 27.7 20 0.00042 29.0 -0.1 36 175-210 57-92 (130)
409 PRK07023 short chain dehydroge 27.6 93 0.002 27.8 4.3 29 87-118 2-31 (243)
410 PRK05653 fabG 3-ketoacyl-(acyl 27.4 1.1E+02 0.0024 26.7 4.7 31 87-120 6-37 (246)
411 PLN00203 glutamyl-tRNA reducta 27.4 75 0.0016 33.6 4.1 33 86-120 266-298 (519)
412 TIGR02279 PaaC-3OHAcCoADH 3-hy 27.2 87 0.0019 32.8 4.5 31 87-120 6-36 (503)
413 PRK04965 NADH:flavorubredoxin 27.1 92 0.002 30.4 4.5 35 85-120 1-35 (377)
414 cd05281 TDH Threonine dehydrog 27.0 4.1E+02 0.0088 25.1 8.8 29 87-118 165-194 (341)
415 PRK10538 malonic semialdehyde 26.9 1E+02 0.0023 27.7 4.5 30 87-119 1-31 (248)
416 TIGR01082 murC UDP-N-acetylmur 26.6 3.3E+02 0.0071 27.5 8.4 30 88-121 1-31 (448)
417 cd08246 crotonyl_coA_red croto 26.3 5.1E+02 0.011 25.2 9.5 30 87-119 195-225 (393)
418 PLN02662 cinnamyl-alcohol dehy 26.2 89 0.0019 29.1 4.0 29 87-118 5-34 (322)
419 PRK04148 hypothetical protein; 26.2 1.2E+02 0.0026 26.5 4.6 29 87-119 18-46 (134)
420 cd05284 arabinose_DH_like D-ar 26.1 2.9E+02 0.0063 25.8 7.5 32 87-120 169-200 (340)
421 PRK00258 aroE shikimate 5-dehy 25.9 85 0.0018 29.8 3.9 32 87-120 124-155 (278)
422 PRK08268 3-hydroxy-acyl-CoA de 25.5 98 0.0021 32.4 4.6 30 87-119 8-37 (507)
423 cd08292 ETR_like_2 2-enoyl thi 25.4 5.3E+02 0.012 23.6 9.1 32 87-121 141-173 (324)
424 TIGR00715 precor6x_red precorr 25.4 81 0.0018 30.2 3.6 73 87-187 1-76 (256)
425 cd08293 PTGR2 Prostaglandin re 25.3 1.6E+02 0.0034 27.7 5.6 31 87-120 156-188 (345)
426 cd01337 MDH_glyoxysomal_mitoch 25.3 88 0.0019 30.8 4.0 22 87-108 1-23 (310)
427 KOG0455 Homoserine dehydrogena 25.2 63 0.0014 32.0 2.9 37 85-121 2-44 (364)
428 PRK06019 phosphoribosylaminoim 25.1 1.1E+02 0.0024 30.1 4.7 31 87-120 3-33 (372)
429 TIGR03570 NeuD_NnaD sugar O-ac 25.0 1.2E+02 0.0027 25.9 4.5 30 88-120 1-30 (201)
430 PRK14852 hypothetical protein; 25.0 58 0.0012 37.3 2.9 23 86-108 332-354 (989)
431 PRK10217 dTDP-glucose 4,6-dehy 24.9 1E+02 0.0022 29.3 4.3 23 87-109 2-25 (355)
432 PF01232 Mannitol_dh: Mannitol 24.6 94 0.002 26.9 3.6 35 87-121 1-38 (151)
433 PRK12826 3-ketoacyl-(acyl-carr 24.5 1.2E+02 0.0025 26.8 4.3 31 87-120 7-38 (251)
434 PRK14620 NAD(P)H-dependent gly 24.5 74 0.0016 30.6 3.2 22 87-108 1-22 (326)
435 PRK00676 hemA glutamyl-tRNA re 24.5 88 0.0019 31.4 3.8 33 86-120 174-206 (338)
436 TIGR01179 galE UDP-glucose-4-e 24.4 1.1E+02 0.0025 28.0 4.4 29 88-119 1-30 (328)
437 PRK07454 short chain dehydroge 24.4 1.4E+02 0.003 26.5 4.8 31 87-120 7-38 (241)
438 cd08261 Zn_ADH7 Alcohol dehydr 24.3 4.6E+02 0.01 24.5 8.6 30 87-119 161-190 (337)
439 COG1893 ApbA Ketopantoate redu 24.2 99 0.0022 30.2 4.1 22 87-108 1-22 (307)
440 PRK09987 dTDP-4-dehydrorhamnos 24.2 1E+02 0.0022 29.1 4.0 22 87-108 1-23 (299)
441 PTZ00345 glycerol-3-phosphate 23.8 1.1E+02 0.0023 30.9 4.3 24 85-108 10-33 (365)
442 COG1249 Lpd Pyruvate/2-oxoglut 23.8 2.6E+02 0.0057 29.1 7.2 36 84-120 171-206 (454)
443 PRK07236 hypothetical protein; 23.7 1.2E+02 0.0026 29.6 4.5 33 85-120 5-37 (386)
444 PLN02927 antheraxanthin epoxid 23.3 3.3E+02 0.0072 29.9 8.2 33 84-119 79-111 (668)
445 PRK07231 fabG 3-ketoacyl-(acyl 23.3 1.4E+02 0.003 26.4 4.6 31 87-120 6-37 (251)
446 cd08240 6_hydroxyhexanoate_dh_ 23.3 1.8E+02 0.0039 27.5 5.6 91 87-201 177-268 (350)
447 cd08287 FDH_like_ADH3 formalde 23.3 3.3E+02 0.0071 25.6 7.3 30 87-119 170-200 (345)
448 PRK08163 salicylate hydroxylas 23.2 1.2E+02 0.0026 29.3 4.5 32 85-119 3-34 (396)
449 PRK08618 ornithine cyclodeamin 23.2 1.4E+02 0.003 29.1 4.9 34 86-121 127-160 (325)
450 PRK12827 short chain dehydroge 23.2 1.4E+02 0.003 26.3 4.5 30 87-119 7-37 (249)
451 TIGR01472 gmd GDP-mannose 4,6- 23.2 1.2E+02 0.0026 29.0 4.3 30 88-120 2-32 (343)
452 KOG3923 D-aspartate oxidase [A 23.0 1.3E+02 0.0027 30.4 4.5 36 85-120 2-41 (342)
453 COG3268 Uncharacterized conser 22.9 39 0.00085 34.4 1.0 25 84-108 4-29 (382)
454 cd08248 RTN4I1 Human Reticulon 22.7 2.6E+02 0.0056 26.2 6.5 31 87-120 164-195 (350)
455 TIGR01771 L-LDH-NAD L-lactate 22.6 96 0.0021 30.1 3.6 19 91-109 1-19 (299)
456 PRK11728 hydroxyglutarate oxid 22.6 1.4E+02 0.003 29.3 4.7 34 86-120 2-35 (393)
457 PLN02172 flavin-containing mon 22.4 2.4E+02 0.0052 29.1 6.6 80 88-185 206-285 (461)
458 PF07991 IlvN: Acetohydroxy ac 22.4 1.4E+02 0.0029 27.3 4.3 32 87-121 5-36 (165)
459 PRK07577 short chain dehydroge 22.3 1.4E+02 0.0031 26.2 4.4 30 87-119 4-34 (234)
460 TIGR03376 glycerol3P_DH glycer 22.2 99 0.0021 30.8 3.7 21 88-108 1-21 (342)
461 cd08265 Zn_ADH3 Alcohol dehydr 22.2 5.1E+02 0.011 25.2 8.7 29 87-118 205-234 (384)
462 cd08249 enoyl_reductase_like e 22.1 3.8E+02 0.0083 25.3 7.6 97 87-208 156-255 (339)
463 cd08252 AL_MDR Arginate lyase 22.1 2.6E+02 0.0056 25.9 6.3 97 87-207 151-248 (336)
464 PLN02858 fructose-bisphosphate 22.0 1.1E+02 0.0023 36.3 4.4 32 86-120 324-355 (1378)
465 PRK12320 hypothetical protein; 22.0 1.2E+02 0.0027 33.3 4.6 31 87-120 1-32 (699)
466 TIGR01777 yfcH conserved hypot 21.9 1.1E+02 0.0023 27.8 3.6 29 89-120 1-30 (292)
467 PRK08125 bifunctional UDP-gluc 21.8 1.3E+02 0.0027 32.3 4.6 33 86-120 315-348 (660)
468 PLN02650 dihydroflavonol-4-red 21.7 1.4E+02 0.003 28.6 4.4 29 87-118 6-35 (351)
469 PLN02986 cinnamyl-alcohol dehy 21.6 1.9E+02 0.0042 27.1 5.4 29 87-118 6-35 (322)
470 PRK05565 fabG 3-ketoacyl-(acyl 21.5 1.6E+02 0.0034 25.9 4.5 29 87-118 6-35 (247)
471 TIGR01763 MalateDH_bact malate 21.4 1.3E+02 0.0028 29.3 4.2 145 87-262 2-165 (305)
472 PRK12829 short chain dehydroge 21.4 1.5E+02 0.0033 26.5 4.5 30 87-119 12-42 (264)
473 PTZ00325 malate dehydrogenase; 21.3 96 0.0021 30.7 3.4 80 176-263 76-176 (321)
474 PRK08243 4-hydroxybenzoate 3-m 21.2 1.4E+02 0.003 29.3 4.4 32 86-120 2-33 (392)
475 TIGR03169 Nterm_to_SelD pyridi 21.2 4.6E+02 0.01 25.1 8.0 34 88-121 1-34 (364)
476 PF00106 adh_short: short chai 21.2 2.1E+02 0.0045 23.7 5.0 31 88-120 2-33 (167)
477 PRK06947 glucose-1-dehydrogena 21.0 1.6E+02 0.0034 26.2 4.5 31 85-118 1-32 (248)
478 PF06115 DUF956: Domain of unk 21.0 85 0.0019 27.2 2.5 40 149-190 24-69 (118)
479 PRK12824 acetoacetyl-CoA reduc 20.9 1.7E+02 0.0036 25.8 4.6 29 87-118 3-32 (245)
480 PRK00711 D-amino acid dehydrog 20.9 1.6E+02 0.0034 28.8 4.7 31 87-120 1-31 (416)
481 COG0579 Predicted dehydrogenas 20.7 1.7E+02 0.0037 30.3 5.2 36 85-121 2-37 (429)
482 PRK09135 pteridine reductase; 20.7 1.7E+02 0.0037 25.7 4.6 30 87-119 7-37 (249)
483 COG1252 Ndh NADH dehydrogenase 20.7 2.7E+02 0.0059 28.7 6.6 35 85-120 2-36 (405)
484 cd05285 sorbitol_DH Sorbitol d 20.6 4.6E+02 0.01 24.7 7.8 29 87-118 164-193 (343)
485 COG4995 Uncharacterized protei 20.6 35 0.00075 35.4 0.1 73 135-212 279-363 (420)
486 COG0677 WecC UDP-N-acetyl-D-ma 20.5 1.1E+02 0.0024 31.8 3.7 31 85-118 8-38 (436)
487 cd01078 NAD_bind_H4MPT_DH NADP 20.4 1.8E+02 0.0039 25.6 4.7 30 87-119 29-59 (194)
488 KOG0022 Alcohol dehydrogenase, 20.3 2.2E+02 0.0048 29.1 5.6 98 87-206 194-293 (375)
489 cd08286 FDH_like_ADH2 formalde 20.3 5.7E+02 0.012 24.0 8.3 31 87-119 168-198 (345)
490 PRK09009 C factor cell-cell si 20.2 1E+02 0.0022 27.3 3.0 22 87-108 1-23 (235)
491 PRK11150 rfaD ADP-L-glycero-D- 20.2 1.5E+02 0.0032 27.6 4.3 29 89-120 2-31 (308)
492 TIGR02354 thiF_fam2 thiamine b 20.1 1.3E+02 0.0028 27.5 3.7 23 86-108 21-43 (200)
493 PRK08177 short chain dehydroge 20.1 1.7E+02 0.0037 25.9 4.4 30 88-120 3-33 (225)
494 PRK08267 short chain dehydroge 20.1 1.7E+02 0.0037 26.3 4.5 29 88-119 3-32 (260)
495 PRK05562 precorrin-2 dehydroge 20.1 5.8E+02 0.013 24.1 8.1 32 86-120 25-56 (223)
496 PRK12828 short chain dehydroge 20.1 1.7E+02 0.0037 25.5 4.4 30 87-119 8-38 (239)
No 1
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=4.4e-84 Score=643.36 Aligned_cols=291 Identities=80% Similarity=1.201 Sum_probs=267.2
Q ss_pred cccCCCCCCCCcccccCCCCCCCCCCcccccccccccccCccccccccccccCCCcCHHHHHHhhcccccccCCCCcccc
Q 020217 3 SHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKE 82 (329)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (329)
+|||||++|||+++|++|+++ .++.+|++|+|||++++++|.....+.+|.+.+..++..+. .+....+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 71 (442)
T PLN02237 1 THAALASSRIPATTRLPSKAS--------HKRLEVAEFSGLRASSCVTFAKNAREASFFDVVASQLAPKV-AGSTPVRGE 71 (442)
T ss_pred CcchhcccCCccccccccccc--------cccccccccccccccccccccccccchhHHHHhhhhhhhhh-ccccccccc
Confidence 699999999999999999986 26778999999999999999877788899999999998765 334455667
Q ss_pred ccCeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEE
Q 020217 83 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (329)
Q Consensus 83 ~~~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~ 162 (329)
++|++||||||||||||+++|+++++.+++++||+|||+.++++++|||||||+||+|+++|++.+++.|.+||+.|+|+
T Consensus 72 ~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~ 151 (442)
T PLN02237 72 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVV 151 (442)
T ss_pred ccceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEE
Confidence 78989999999999999999998875435699999999999999999999999999999999864578899999999999
Q ss_pred ecCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchh
Q 020217 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTT 242 (329)
Q Consensus 163 ~~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTT 242 (329)
++++|.++||+++|+||||||||.|+++++++.|+++|||||+||+|++++|+|+||||||++.|++.+++|||||||||
T Consensus 152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTT 231 (442)
T PLN02237 152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTT 231 (442)
T ss_pred EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHH
Confidence 99999999999999999999999999999999999999999999999987678999999999999864378999999999
Q ss_pred hhhhhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-CCcchhhhhccccccCCCchhhhcc
Q 020217 243 NCLAPFVKVMDEELGIVKGAMTTTHSYTGDQALGC-FTQGLEESESCSVEHCPNEHRCRQG 302 (329)
Q Consensus 243 n~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~~~d~~r~r~a~~~i~p~~~~~~~~ 302 (329)
|||+|++|+|||+|||++|+|||||+||+||+++| +|+||||+|+|++||||++.---+.
T Consensus 232 NcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h~D~Rr~Raaa~nIIPtsTGAAkA 292 (442)
T PLN02237 232 NCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKA 292 (442)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCCcccccccccccccccCCcchhhh
Confidence 99999999999999999999999999999999999 9999999999999999998765443
No 2
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.9e-74 Score=559.34 Aligned_cols=216 Identities=42% Similarity=0.676 Sum_probs=199.5
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCC--CCCceEEEEeCC-CChhhhhhhccccccccccCceEEEe-------cCCeEEE
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIV-------DNETISV 154 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~--~~~l~vVaInd~-~d~~~~ayLLkyDS~hG~F~g~V~v~-------~~~~L~i 154 (329)
|++||||||||||||+++|+++++. .+++++|+|||+ .++++++|||||||+||+|+++|+++ +++.|++
T Consensus 2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i 81 (361)
T PTZ00434 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV 81 (361)
T ss_pred CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence 5689999999999999999988752 246999999995 89999999999999999999999972 4788999
Q ss_pred CCeEEEEE-ecCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCc
Q 020217 155 DGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVAN 233 (329)
Q Consensus 155 nGk~I~V~-~~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~ 233 (329)
||++|+++ +++||+++||+++|+||||||||.|++++.++.||++||||||||||+++ +.|||||||||+.|++..++
T Consensus 82 ng~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d-~~~t~V~GVN~~~y~~~~~~ 160 (361)
T PTZ00434 82 NGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASG-GAKTIVMGVNQHEYSPTEHH 160 (361)
T ss_pred CCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCC-CCceEEEcCChHHcCcccCc
Confidence 99999996 99999999999999999999999999999999999999999999999876 45899999999999872278
Q ss_pred eEEcCCchhhhhhhHHHhh-hhhcCceEEEEEEEeeccCCCCCCC-C-CcchhhhhccccccCCCchhhhc
Q 020217 234 IVSNASCTTNCLAPFVKVM-DEELGIVKGAMTTTHSYTGDQALGC-F-TQGLEESESCSVEHCPNEHRCRQ 301 (329)
Q Consensus 234 IISnASCTTn~LaPvlKvL-~d~fGI~~g~vTTvHa~T~dQ~l~D-~-~~d~~r~r~a~~~i~p~~~~~~~ 301 (329)
||||||||||||+|++|+| ||+|||++|+|||||+||+||+++| + |+||||+|+|+|||||++.---+
T Consensus 161 IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAk 231 (361)
T PTZ00434 161 VVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAK 231 (361)
T ss_pred EEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhh
Confidence 9999999999999999999 7999999999999999999999999 7 58999999999999999865433
No 3
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=2.1e-72 Score=554.91 Aligned_cols=256 Identities=64% Similarity=1.028 Sum_probs=233.9
Q ss_pred cccccccCccccccccccccCCCcCHHHHHHhhcccccccCCCCccccccCeeeEEEEcCChhHHHHHHHHHhCCCCCce
Q 020217 35 LDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLD 114 (329)
Q Consensus 35 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkVaInGfGRIGR~vlR~l~~r~~~~l~ 114 (329)
.+|++|+|||++++++|+......+| +.+++..+. .+....+..++|++||||||||||||.++|+|+++.++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~kVaInGfGrIGR~vlr~l~~~~~~~~e 88 (395)
T PLN03096 13 KGFSEFSGLKSSSAVTFGKRSDSLDF---VVFATSAVS-SSGGARRAVTEAKIKVAINGFGRIGRNFLRCWHGRKDSPLD 88 (395)
T ss_pred CcccccccccccCcccccccccchhh---hhhhhhhhh-ccccccccccccccEEEEECcCHHHHHHHHHHHhCCCCCeE
Confidence 49999999999888888655555555 777776654 22334455778889999999999999999999988666799
Q ss_pred EEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCCCCCCCccCCCcEEEcCCCCCCChhhHH
Q 020217 115 VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 194 (329)
Q Consensus 115 vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~P~~idW~~~GiDiVvesTG~f~~~e~a~ 194 (329)
+|+|||+.++++++|||+|||+||+|+++|+..+++.|.+||+.|+|++++||+++||.++|+||||||||.|.++++++
T Consensus 89 vvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~ 168 (395)
T PLN03096 89 VVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAG 168 (395)
T ss_pred EEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEECcchhhhHHHHH
Confidence 99999999999999999999999999999986557889999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhhhhhHHHhhhhhcCceEEEEEEEeeccCCCC
Q 020217 195 KHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQA 274 (329)
Q Consensus 195 ~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~ 274 (329)
+|+++|||||+||+|.++ ++|+||||||++.|++. ++||||||||||||+|++|+|||+|||++|+|||||+||++|+
T Consensus 169 ~hl~aGAkkV~iSap~~~-~~ptvV~GVN~~~l~~~-~~IISnaSCTTn~LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~ 246 (395)
T PLN03096 169 KHIQAGAKKVLITAPGKG-DIPTYVVGVNADDYKHS-DPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQR 246 (395)
T ss_pred HHHHCCCEEEEeCCCCCC-CCCeEeCccCHHHhccC-CCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEccccccc
Confidence 999999999999999765 78999999999999876 8899999999999999999999999999999999999999999
Q ss_pred CCC-CCcchhhhhccccccCCCc
Q 020217 275 LGC-FTQGLEESESCSVEHCPNE 296 (329)
Q Consensus 275 l~D-~~~d~~r~r~a~~~i~p~~ 296 (329)
++| .|+|+||+|++++||||.+
T Consensus 247 llD~~~~d~rr~Raaa~NiIPts 269 (395)
T PLN03096 247 LLDASHRDLRRARAAALNIVPTS 269 (395)
T ss_pred cccCCCCccccchhhhccccccC
Confidence 999 9999999999999999997
No 4
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=2.9e-70 Score=546.60 Aligned_cols=244 Identities=32% Similarity=0.560 Sum_probs=222.9
Q ss_pred cccccCCCcCHHHHHHhhcccccccCCCCccccccCeeeEEEEcCChhHHHHHHHHHhCC--CCCceEEEEe----CCCC
Q 020217 50 TYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVN----DSGG 123 (329)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkVaInGfGRIGR~vlR~l~~r~--~~~l~vVaIn----d~~d 123 (329)
.|..++++.++++||+++|++.. ++.. ..++.||||||||||||+++|+++++. +.++++|+|| |..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~-----~~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d 170 (477)
T PRK08289 97 KYKAEGDGSDVEAFVAEELADAV-GGAD-----DIEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGD 170 (477)
T ss_pred HHhhccCCCcHHHHHHHHHhhhh-cCCC-----CCCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCC
Confidence 55555778899999999999876 4321 246789999999999999999998763 2469999995 5689
Q ss_pred hhhhhhhccccccccccCceEEEe-cCCeEEECCeEEEEEecCCCCCCCCccCCCc--EEEcCCCCCCChhhHHHHHH-c
Q 020217 124 VKNASHLLKYDSLLGTFKADVKIV-DNETISVDGKLIKVVSNRDPLQLPWAELGID--IVIEGTGVFVDGPGAGKHIQ-A 199 (329)
Q Consensus 124 ~~~~ayLLkyDS~hG~F~g~V~v~-~~~~L~inGk~I~V~~~~~P~~idW~~~GiD--iVvesTG~f~~~e~a~~Hl~-a 199 (329)
+++++|||+|||+||+|+++|+++ +++.|++||+.|+++++++|+++||+++|+| +||||||.|++++++++||+ +
T Consensus 171 ~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~ 250 (477)
T PRK08289 171 LEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSK 250 (477)
T ss_pred HHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhcc
Confidence 999999999999999999999986 3789999999999999999999999999999 99999999999999999999 8
Q ss_pred CCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhhhhhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-C
Q 020217 200 GAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQALGC-F 278 (329)
Q Consensus 200 GakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~ 278 (329)
||||||||||+++ |+|+||||||++.|+++ ++||||||||||||+|++|+|||+|||++|+||||||||+||+++| +
T Consensus 251 GakkViiSAP~k~-d~p~iV~GVN~~~~~~~-~~IISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~ 328 (477)
T PRK08289 251 GVAKVLLTAPGKG-DIKNIVHGVNHSDITDE-DKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNY 328 (477)
T ss_pred CCCEEEECCCCCC-CCCeEEcccCHHHhCCC-CCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhh
Confidence 9999999999987 78999999999999876 8899999999999999999999999999999999999999999999 9
Q ss_pred CcchhhhhccccccCCCchhhhc
Q 020217 279 TQGLEESESCSVEHCPNEHRCRQ 301 (329)
Q Consensus 279 ~~d~~r~r~a~~~i~p~~~~~~~ 301 (329)
|+|+||+|+|++||||++.-.-+
T Consensus 329 hkd~RrgRaaa~NIIptsTGAAk 351 (477)
T PRK08289 329 HKGDRRGRSAPLNMVITETGAAK 351 (477)
T ss_pred hhcCcccceeeeeeEecCCChhh
Confidence 99999999999999998865433
No 5
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=6e-69 Score=521.72 Aligned_cols=210 Identities=60% Similarity=1.024 Sum_probs=199.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
+||||||||||||+++|++++++++++++|+|||+.++++++|||||||+||+|+++|++ +++.|.+||+.|+++++++
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISA-DENSITVNGKTIKCVSDRN 80 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEE-cCCEEEECCEEEEEEEcCC
Confidence 699999999999999999887643569999999999999999999999999999999998 5788999999999999999
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhhhh
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLA 246 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~La 246 (329)
|+++||+++|+||||||||.|++++++++|+++|||||++|+|++++|+|+||||||++.|++.+++||||||||||||+
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~La 160 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLA 160 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHHH
Confidence 99999999999999999999999999999999999999999998877889999999999998533789999999999999
Q ss_pred hHHHhhhhhcCceEEEEEEEeeccCCCCCCC-CCcchhhhhccccccCCCch
Q 020217 247 PFVKVMDEELGIVKGAMTTTHSYTGDQALGC-FTQGLEESESCSVEHCPNEH 297 (329)
Q Consensus 247 PvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~~~d~~r~r~a~~~i~p~~~ 297 (329)
|++|+||++|||++++|||||+||+||+++| .|+||||+|+|++||||.+.
T Consensus 161 p~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~~d~r~~raaa~NiIPt~t 212 (337)
T PRK07403 161 PIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTST 212 (337)
T ss_pred HHHHHHHHhcCeeEEEEEEEeeecCCcccccccccccccccccccccccCCc
Confidence 9999999999999999999999999999999 99999999999999999986
No 6
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-69 Score=517.63 Aligned_cols=209 Identities=49% Similarity=0.782 Sum_probs=199.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
++||||||||||||+++|++.++.. +|++|+|||+.+++++||||+|||+||+|.++|+. +++.+.|||+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~-dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~-~~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDG-DIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEV-KDDALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCC-CeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccc-cCCeEEECCceEEEEecC
Confidence 3799999999999999999999842 69999999999999999999999999999999986 578899999999999999
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHc-CCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhh
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA-GAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~a-GakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~ 244 (329)
+|+++||.++|+|+||||||.|+++|++++|+++ |||||++|||+++ |+++||||||++.|++. +.||||+||||||
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~-~~~~vv~gvn~~~~~~~-~~iVsnaSCTTNc 156 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD-DVATVVYGVNHNYYDAG-HTIVSNASCTTNC 156 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC-CccEEEEeccccccCCC-CcEEEEccchhhh
Confidence 9999999999999999999999999999999998 6999999999986 59999999999999985 8999999999999
Q ss_pred hhhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-CCcchhhhhccccccCCCchh
Q 020217 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQALGC-FTQGLEESESCSVEHCPNEHR 298 (329)
Q Consensus 245 LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~~~d~~r~r~a~~~i~p~~~~ 298 (329)
|+|++|+|+|+|||++|+|||+|+||+||+++| +|+||||+|+|++||||.+.-
T Consensus 157 Lap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph~~~rr~raa~~niIp~sTg 211 (335)
T COG0057 157 LAPVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPHKDLRRARAAALNIIPTSTG 211 (335)
T ss_pred hHHHHHHHHHhcCeeEEEEEEEEcccCCCccccCcccchhhhccccCCCCcCCCc
Confidence 999999999999999999999999999999999 999999999999999998753
No 7
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=5.5e-67 Score=507.06 Aligned_cols=206 Identities=43% Similarity=0.712 Sum_probs=195.7
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
|++||||||||||||+++|+++++ +++++|+|||+.++++++|||||||+||+|+++|++ +++.|.+||+.|+++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~--~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~-~~~~l~v~g~~I~v~~~ 77 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAE 77 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHC--CCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEe-cCCEEEECCeEEEEEEc
Confidence 347999999999999999998875 469999999999999999999999999999999998 47889999999999999
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhh
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~ 244 (329)
++|+++||+++|+||||||||.|++++++++|+++|||||++|+|.++ ++|+||||||++.|++ ++|||||||||||
T Consensus 78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~--~~IISnaSCtTn~ 154 (331)
T PRK15425 78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD-NTPMFVKGANFDKYAG--QDIVSNASCTTNC 154 (331)
T ss_pred CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCC-CCCEEEcccCHHHcCC--CCEEECCCcHHHH
Confidence 999999999999999999999999999999999999999999999654 7899999999999964 6899999999999
Q ss_pred hhhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-C-CcchhhhhccccccCCCc
Q 020217 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQALGC-F-TQGLEESESCSVEHCPNE 296 (329)
Q Consensus 245 LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~-~~d~~r~r~a~~~i~p~~ 296 (329)
|+|++|+|||+|||+++.|||||+||++|+++| . ++|+||+|++++||||.+
T Consensus 155 Lapvlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~ 208 (331)
T PRK15425 155 LAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSS 208 (331)
T ss_pred HHHHHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceeccc
Confidence 999999999999999999999999999999999 4 589999999999999997
No 8
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=7.9e-67 Score=507.79 Aligned_cols=209 Identities=50% Similarity=0.761 Sum_probs=196.6
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
|++||||||||||||+++|+++++ +++++|+|||+.++++++|||||||+||+|+++|++ +++.|.+||+.|+++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~--~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEA-FEDHLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhc--CCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEc
Confidence 457999999999999999998875 469999999999999999999999999999999998 57899999999999999
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhh
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~ 244 (329)
++|+++||++.|+||||||||.|+++++++.|+++|||||++|+|++++|+ ++|+|||++.|++..++|||||||||||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~-~lV~gVN~~~~~~~~~~IISnaSCTTn~ 156 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDV-TIVVGVNEDQLDIEKHTIISNASCTTNC 156 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCC-cEEecccHHHhccCCCCEEECCchHHHH
Confidence 999999999999999999999999999999999999999999999887555 5689999999987327899999999999
Q ss_pred hhhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-CCcchhhhhccccccCCCch
Q 020217 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQALGC-FTQGLEESESCSVEHCPNEH 297 (329)
Q Consensus 245 LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~~~d~~r~r~a~~~i~p~~~ 297 (329)
|+|++|+|||+|||++++|||||+||+||+++| .++||||+|++++||||.+.
T Consensus 157 Lap~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~~d~rr~R~a~~niiPtst 210 (343)
T PRK07729 157 LAPVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTT 210 (343)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEecccCcccccccchhhhhcccccccceecCCC
Confidence 999999999999999999999999999999999 88999999999999999753
No 9
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-66 Score=506.08 Aligned_cols=207 Identities=42% Similarity=0.703 Sum_probs=196.5
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~-~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~ 163 (329)
|++||||||||||||+++|+++++ +++++|+|||+ .++++++|||||||+||+|+++|++ +++.|++||+.|++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~--~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALER--EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSV-TDGFLMIGSKKVHVFF 77 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhc--CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEe-cCCEEEECCeEEEEEe
Confidence 457999999999999999999875 46999999995 7999999999999999999999998 4788999999999999
Q ss_pred cCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhh
Q 020217 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (329)
Q Consensus 164 ~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn 243 (329)
+++|+++||++.|+||||||||.|+++++++.|+++|||||++|+|.++ |+|+||||||++.|++. ++||||||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~~-~~IISnasCTTn 155 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKD-DTPIYVMGVNHTQYDKS-QRIVSNASCTTN 155 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCC-CCCeEEcccCHHHhCCC-CCEEECCccHHH
Confidence 9999999999999999999999999999999999999999999999764 78999999999999876 789999999999
Q ss_pred hhhhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-C---CcchhhhhccccccCCCc
Q 020217 244 CLAPFVKVMDEELGIVKGAMTTTHSYTGDQALGC-F---TQGLEESESCSVEHCPNE 296 (329)
Q Consensus 244 ~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~---~~d~~r~r~a~~~i~p~~ 296 (329)
||+|++|+|||+|||+++.||||||||++|+++| . ++||||+|++++||||.+
T Consensus 156 ~Lap~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~ 212 (337)
T PTZ00023 156 CLAPLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPAS 212 (337)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccC
Confidence 9999999999999999999999999999999999 4 479999999999999998
No 10
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=2.7e-64 Score=500.10 Aligned_cols=206 Identities=47% Similarity=0.763 Sum_probs=195.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~-~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
+||||||||||||+++|++.++ .++++|+|||+ .++++++|||||||+||+|+++|++.+++.|.+||+.|+|++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~--~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSR--DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhc--CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 7999999999999999998864 46999999996 89999999999999999999999964578899999999999999
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhhh
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~L 245 (329)
+|++++|+++|+||||||||.|+++++++.|+++|||||||++|.+ |+|+||||||++.|++. ++||||||||||||
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~--dvPlvV~gVN~~~l~~~-~~IISnaSCTTn~L 240 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA--DAPMFVVGVNEKTYKPN-MNIVSNASCTTNCL 240 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC--CCCeEEeccCHHHhCCC-CCeeeCCCcHHHHH
Confidence 9999999999999999999999999999999999999999999964 68999999999999876 78999999999999
Q ss_pred hhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-C-CcchhhhhccccccCCCch
Q 020217 246 APFVKVMDEELGIVKGAMTTTHSYTGDQALGC-F-TQGLEESESCSVEHCPNEH 297 (329)
Q Consensus 246 aPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~-~~d~~r~r~a~~~i~p~~~ 297 (329)
+|++|+|||+|||+++.|||||+||+||+++| . ++|||++|++++||||...
T Consensus 241 ap~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~t 294 (421)
T PLN02272 241 APLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSST 294 (421)
T ss_pred HHHHHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCC
Confidence 99999999999999999999999999999999 4 6899999999999999984
No 11
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=6.5e-65 Score=492.05 Aligned_cols=206 Identities=50% Similarity=0.798 Sum_probs=196.1
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCC-eEEECCe-EEEEEecC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNE-TISVDGK-LIKVVSNR 165 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~-~L~inGk-~I~V~~~~ 165 (329)
||||||||||||+++|+++++..+++++|+|||+.++++++|||||||+||+|+++|+++ ++ .|.+||+ .|.+++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~-~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTAD-EDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEec-CCceEEECCeEEEEEEecC
Confidence 699999999999999999876324699999999999999999999999999999999985 56 7999999 99999999
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhhh
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~L 245 (329)
+|+++||+++|+||||||||.|+++++++.|+++|||||++|+|++++ +||||||||++.|+.. ++||||||||||||
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~-~plvV~gVN~~~~~~~-~~IISn~sCtTn~L 157 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGD-APTIVYGVNHDEYDPE-ERIISNASCTTNCL 157 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCC-CCeecCCCCHHHhCCC-CCEEecCCchHHHH
Confidence 999999999999999999999999999999999999999999998763 8999999999999875 78999999999999
Q ss_pred hhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-CCcchhhhhccccccCCCc
Q 020217 246 APFVKVMDEELGIVKGAMTTTHSYTGDQALGC-FTQGLEESESCSVEHCPNE 296 (329)
Q Consensus 246 aPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~~~d~~r~r~a~~~i~p~~ 296 (329)
+|+||+||++|||+++.|||||+||++|+++| +++|+|++|++++||||..
T Consensus 158 ap~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~~d~r~~r~~a~NiIP~~ 209 (327)
T TIGR01534 158 APLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPHKDLRRARAAALNIIPTS 209 (327)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeecCccccccCCCCCCcCceEeEeeeeccC
Confidence 99999999999999999999999999999999 8899999999999999997
No 12
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6e-64 Score=487.45 Aligned_cols=206 Identities=24% Similarity=0.407 Sum_probs=192.1
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhccccccccccC-ceEEEecCCeEEECC-eEEEE
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFK-ADVKIVDNETISVDG-KLIKV 161 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~-~d~~~~ayLLkyDS~hG~F~-g~V~v~~~~~L~inG-k~I~V 161 (329)
|++||||||||||||+++|+++++ +++++|+|||+ .++++++|||||||+||+|+ ++|++ +++.|.+|| ++|++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~-~~~~l~i~g~~~i~~ 77 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV-VGEQIVLNGTQKIRV 77 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEE-cCCEEecCCCeEEEE
Confidence 457999999999999999998875 46999999995 79999999999999999996 69998 478899999 89999
Q ss_pred EecCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCch
Q 020217 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCT 241 (329)
Q Consensus 162 ~~~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCT 241 (329)
+++++|+++||+++|+||||||||.|++.+.+..|+++|||||||++|++ |+|+||||||++.|++. ++||||||||
T Consensus 78 ~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~--d~p~vV~gVN~~~~~~~-~~IISnaSCT 154 (342)
T PTZ00353 78 SAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA--DAPTVMAGSNDERLSAS-LPVCCAGAPI 154 (342)
T ss_pred EecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC--CCCeEEecCChHHcCCC-CCEEECCCHH
Confidence 99999999999999999999999999999999999999999999999985 57999999999999886 7899999999
Q ss_pred hhhhhhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-C---CcchhhhhccccccCCCch
Q 020217 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQALGC-F---TQGLEESESCSVEHCPNEH 297 (329)
Q Consensus 242 Tn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~---~~d~~r~r~a~~~i~p~~~ 297 (329)
||||+|++|+|||+|||++|+|||||+|+ +|...| + ++||||+|+|+++|+|.+.
T Consensus 155 Tn~LapvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtst 213 (342)
T PTZ00353 155 AVALAPVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRD 213 (342)
T ss_pred HHHHHHHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCC
Confidence 99999999999999999999999999997 788887 3 4899999999999999654
No 13
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=9.6e-64 Score=485.39 Aligned_cols=208 Identities=40% Similarity=0.681 Sum_probs=197.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCC-CCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~-~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
+||||||||||||.++|+|+++.+ +++++|+|||+.++++++|||||||+||+|+++|+. +++.|.+||+.|++++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQ-ERDQLFVGDDAIRLLHER 80 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEcC
Confidence 699999999999999999998743 469999999999999999999999999999999997 578999999999999999
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCC-CCCCCeEEeccCccccCCCCCceEEcCCchhhh
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk-~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~ 244 (329)
+|+++||.++|+||||||||.|.++++++.|+++|||||++|+|++ +++ ++||||||++.|++. ++|||||||||||
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~-~~vV~gVN~~~~~~~-~~IISnasCTTn~ 158 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLD-ATVVYGVNHDQLRAE-HRIVSNASCTTNC 158 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCC-CeEEeCcCHHHhCcC-CCEEECCchHHHH
Confidence 9999999999999999999999999999999999999999999975 434 599999999999876 8899999999999
Q ss_pred hhhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-CCcchhhhhccccccCCCch
Q 020217 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQALGC-FTQGLEESESCSVEHCPNEH 297 (329)
Q Consensus 245 LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~~~d~~r~r~a~~~i~p~~~ 297 (329)
|+|++|+|||+|||+++.||||||||++|+++| .++|+||+|++++||||...
T Consensus 159 Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~~d~rr~r~~a~NiIP~~t 212 (336)
T PRK13535 159 IIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDT 212 (336)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchhhccccccEeeeccccCcc
Confidence 999999999999999999999999999999999 99999999999999999864
No 14
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=4.8e-63 Score=480.85 Aligned_cols=208 Identities=43% Similarity=0.725 Sum_probs=196.7
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhccccccccccCc-eEEEecCCeEEECCeEEEEE
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVV 162 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~-~d~~~~ayLLkyDS~hG~F~g-~V~v~~~~~L~inGk~I~V~ 162 (329)
+++||||||||||||..+|.+.++ +++++|+|||+ .++++++|||||||+||+|++ +|++++++.|.+||+.|+++
T Consensus 4 ~~lrVaI~G~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 4 KKIRIGINGFGRIGRLVARVVLQR--DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred CceEEEEEeecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 358999999999999999998765 57999999996 799999999999999999996 99986678899999999999
Q ss_pred ecCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchh
Q 020217 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTT 242 (329)
Q Consensus 163 ~~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTT 242 (329)
++++|+++||.+.|+||||||||.|+++++++.|+++|||||+||+|++ |+|+||||||++.|++. ++|||||||||
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~--dvp~iV~gVN~~~~~~~-~~IISnasCTT 158 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEHEYKSD-LDIVSNASCTT 158 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC--CCCeEecCcCHHHhCCC-CCEEECCCchH
Confidence 9999999999999999999999999999999999999999999999975 68999999999999876 78999999999
Q ss_pred hhhhhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-C-CcchhhhhccccccCCCch
Q 020217 243 NCLAPFVKVMDEELGIVKGAMTTTHSYTGDQALGC-F-TQGLEESESCSVEHCPNEH 297 (329)
Q Consensus 243 n~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~-~~d~~r~r~a~~~i~p~~~ 297 (329)
|||+|++|+||++|||++++|||||+||++|+++| . ++|+||+|++++||||...
T Consensus 159 n~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~t 215 (338)
T PLN02358 159 NCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 215 (338)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCc
Confidence 99999999999999999999999999999999999 5 6899999999999999984
No 15
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=6.4e-63 Score=479.32 Aligned_cols=207 Identities=38% Similarity=0.652 Sum_probs=196.2
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~-~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~ 163 (329)
|++||||||||||||.++|++.++ ++++++++||+ .++++++|||||||+||+|+++|+. +++.|.+||+.|+|++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~--~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~-~g~~l~~~g~~i~v~~ 77 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDW--PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTA-EGDAIVINGKRIRTTQ 77 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEE-cCCEEEECCEEEEEEe
Confidence 357999999999999999998875 46999999995 7999999999999999999999987 5788999999999999
Q ss_pred cCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhh
Q 020217 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (329)
Q Consensus 164 ~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn 243 (329)
+++|++++|. |+||||||||.|+++++++.|+++|||||++|+|++++|+|+||||||++.|++..++||||||||||
T Consensus 78 ~~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn 155 (334)
T PRK08955 78 NKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTN 155 (334)
T ss_pred cCChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHH
Confidence 9999999998 99999999999999999999999999999999998877889999999999998722789999999999
Q ss_pred hhhhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-CCcchhhhhccccccCCCc
Q 020217 244 CLAPFVKVMDEELGIVKGAMTTTHSYTGDQALGC-FTQGLEESESCSVEHCPNE 296 (329)
Q Consensus 244 ~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~~~d~~r~r~a~~~i~p~~ 296 (329)
||+|++|+|||+|||+++.|||||+||++|+++| .++|+||+|++++||||.+
T Consensus 156 ~Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~~d~r~~r~~a~NiIP~~ 209 (334)
T PRK08955 156 CLAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPHKDLRRARACGMSLIPTT 209 (334)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEeccCccccccCCCcccccchhheecccccc
Confidence 9999999999999999999999999999999999 8899999999999999987
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=4.1e-61 Score=465.14 Aligned_cols=207 Identities=41% Similarity=0.723 Sum_probs=195.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCC-CCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~-~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
||||||||||||.++|+|.++. .+++++++|||+.+.++++|||+|||+||+|+++|+. +++.|.+||+.|+++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKV-DGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEE-eCCEEEECCeEEEEEEcCC
Confidence 6999999999999999999864 3469999999999999999999999999999999997 5789999999999999999
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCC-CCCCCeEEeccCccccCCCCCceEEcCCchhhhh
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk-~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~L 245 (329)
|+++||+++|+|+||||||.|.+++++++|+++||++|++|+|.+ +.+ ++||||||++.|++. ++||||||||||||
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~-~~vV~gVN~~~~~~~-~~IISnasCtTn~l 157 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLD-ATIVYGVNQQDLSAE-HTIVSNASCTTNCI 157 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCC-ceEEeccCHHHhCCC-CCEEeCCCcHHHHH
Confidence 999999999999999999999999999999999999999999975 334 489999999999876 88999999999999
Q ss_pred hhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-CCcchhhhhccccccCCCch
Q 020217 246 APFVKVMDEELGIVKGAMTTTHSYTGDQALGC-FTQGLEESESCSVEHCPNEH 297 (329)
Q Consensus 246 aPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~~~d~~r~r~a~~~i~p~~~ 297 (329)
+|++|+|||+|||++++|||||+||++|+++| .++|+||+|+|++||||...
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~~d~r~~r~a~~NiIP~~t 210 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYHHDLRRTRAASQSIIPVDT 210 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccchhhccccchHhhCeeeCCc
Confidence 99999999999999999999999999999999 99999999999999999755
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-52 Score=390.20 Aligned_cols=192 Identities=43% Similarity=0.700 Sum_probs=180.5
Q ss_pred hHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCCCCCCCccC
Q 020217 97 IGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAEL 175 (329)
Q Consensus 97 IGR~vlR~l~~r~~~~l~vVaInd~-~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~P~~idW~~~ 175 (329)
|||+++ + + .++++|+|||+ +++++++|||+|||+||+|++++++ ++.+++++|++|.++++++|..|+|.+.
T Consensus 1 ig~~~~---~-~--~~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~-~~~~~i~~G~~i~~~~~~~p~~i~w~~~ 73 (285)
T KOG0657|consen 1 IGRLVL---Q-R--NSVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKA-ENFKLIINGNPITIFQFRDPAKIPWGAK 73 (285)
T ss_pred CCcccc---c-c--CCcccccccCcccccccccccccccccCCccccceee-cCCceeecCceEEeecccCcccCccccc
Confidence 577777 2 3 34999999998 8999999999999999999999998 5778889999999999999999999999
Q ss_pred CCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhhhhhHHHhhhhh
Q 020217 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEE 255 (329)
Q Consensus 176 GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~LaPvlKvL~d~ 255 (329)
|+|+|+|+||.|.+.+++..|+++|+||||||||+. |.||||+|||+++|+++ ..||||+|||||||+|+.|+|||+
T Consensus 74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~--dapmfv~gVn~~~y~~~-~~iiSnascttnclaPlaKVi~d~ 150 (285)
T KOG0657|consen 74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSA--DAPMFVMGVNGEKYDNS-LDIISNASCTTNCLAPLAKVIHDN 150 (285)
T ss_pred cceeEeeccccccccccccccccccceEEEeccccC--CCCcccccccccccccc-cceeechhhhhccccchhheeccc
Confidence 999999999999999999999999999999999986 68999999999999987 569999999999999999999999
Q ss_pred cCceEEEEEEEeeccCCCCCCC--CCcchhhhhccccccCCCchh
Q 020217 256 LGIVKGAMTTTHSYTGDQALGC--FTQGLEESESCSVEHCPNEHR 298 (329)
Q Consensus 256 fGI~~g~vTTvHa~T~dQ~l~D--~~~d~~r~r~a~~~i~p~~~~ 298 (329)
|||.+|+|||+|++|++|+.+| +.++||++|.|.|||||.++-
T Consensus 151 fgI~EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTg 195 (285)
T KOG0657|consen 151 FGIMEGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTG 195 (285)
T ss_pred cccccccccceeeeccccccccCcccccccccchhhhcccccccc
Confidence 9999999999999999999999 888999999999999998764
No 18
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=2.5e-49 Score=346.44 Aligned_cols=150 Identities=51% Similarity=0.847 Sum_probs=138.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCC-ChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~-d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
+||||||||||||+++|+++.+ +++++|+|||+. ++++++|||||||+||+|.++++++ ++.|.+||+.|++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~--~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~-~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQ--PDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVD-DDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTS--TTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEE-TTEEEETTEEEEEEHTS
T ss_pred CEEEEECCCcccHHHHHhhccc--ceEEEEEEecccccchhhhhhhhccccccceecccccc-cceeEeecccccchhhh
Confidence 5899999999999999999965 579999999996 9999999999999999999999984 78899999999999999
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCc
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASC 240 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASC 240 (329)
+|+++||+++|+||||||||.|++++.++.|+++||||||+|||+++..+||||||||++.|+++ ++|||+|||
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~-~~iIS~aSC 151 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPE-HHIISNASC 151 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTT-TSEEEE--H
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCC-CCEEEccCC
Confidence 99999999999999999999999999999999999999999999987448999999999999987 599999999
No 19
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=1.4e-44 Score=315.12 Aligned_cols=149 Identities=54% Similarity=0.877 Sum_probs=139.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
+||||||||||||.++|.+.++ +++++++|+|+.++++++|||+|||+||+|.++++. +++.|.+||+.|+++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~-~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEV-DEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEE-eCCEEEECCEEEEEEecCC
Confidence 4899999999999999998765 579999999988999999999999999999999987 4778999999999999999
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCc
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASC 240 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASC 240 (329)
|.++||.++|+||||||||.|.+++.++.|+++||||||||||+++ +.++||+|||++.|+++ ++|||||||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~-~~~t~V~GvN~~~~~~~-~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKD-ADKTFVYGVNHDEYDPE-DHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCC-CCceEEEeechHHcCCC-CCEEEcCCC
Confidence 9999999999999999999999999999999999999999999876 45699999999999986 679999999
No 20
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=7.9e-42 Score=331.86 Aligned_cols=180 Identities=17% Similarity=0.188 Sum_probs=156.0
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChh---hhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK---NASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 89 VaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~---~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
|||||||||||.++|++.++ +++++|+||| .+++ +++++++|||.|+.+...++. +++.|.++|+
T Consensus 1 VaInG~GrIGr~varav~~~--~d~elVaVnD-~~~~~~a~lA~~lgyds~~~~~~~~~~~-~~~~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ--DDMKLVGVTK-TSPDFEAYRAKELGIPVYAASEEFIPRF-EEAGIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC--CCcEEEEEec-CChHHHHHHHHHhCCCEEeecCCcceEe-ccCceEecCC--------
Confidence 69999999999999998765 5799999999 5777 778888899999544446666 3566777765
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhhh
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~L 245 (329)
++++. .++|+|+||||.+...+.++.|++.|+|+|++++|+++...++||+|+|++.|.+. + +|||+|||||||
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~-~-~vs~aSCtTn~L 142 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGK-D-YVRVVSCNTTGL 142 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcC-c-eEEecCchHhhH
Confidence 33443 27999999999999999999999999999999999865224799999999999864 4 999999999999
Q ss_pred hhHHHhhhhhcCceEEEEEEEeeccCCCCCCCCCcchhhhhccccccCCC
Q 020217 246 APFVKVMDEELGIVKGAMTTTHSYTGDQALGCFTQGLEESESCSVEHCPN 295 (329)
Q Consensus 246 aPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~d~~r~r~a~~~i~p~ 295 (329)
+|++|+|++.|||++|.|||+|+ |+||+ |+||+| ++||+|+
T Consensus 143 ap~~~~L~~~fGI~~~~~Ttvh~-t~dq~------d~rrgr--~~~IiP~ 183 (333)
T TIGR01546 143 VRTLNAINDYSKVDKVRAVMVRR-AADPN------DVKKGP--INAIVPD 183 (333)
T ss_pred HHHHHHHHHhcCeEEEEEEEEee-cCChh------hhccCc--hhceEeC
Confidence 99999999999999999999997 99996 999999 5999998
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.6e-34 Score=275.99 Aligned_cols=181 Identities=20% Similarity=0.248 Sum_probs=145.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhcc---ccccccccCceEEEecCCeEEECCeEEEEE
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK---YDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLk---yDS~hG~F~g~V~v~~~~~L~inGk~I~V~ 162 (329)
++||||||||||||.++|++.++ +++++++|+|. ++++.+||++ || .||+|+..++..++..+.+.+.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~~----- 71 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAGT----- 71 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC--CCcEEEEEECC-ChHHHHHHHHhcCCC-ccccCccccccccCCceEEcCC-----
Confidence 37999999999999999998865 57999999996 6889999987 44 5666654443112233444332
Q ss_pred ecCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCC--eEEeccCccccCCCCCceEEcCCc
Q 020217 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP--TYVVGVNEKDYDHEVANIVSNASC 240 (329)
Q Consensus 163 ~~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP--~iV~GVN~~~~~~~~~~IISnASC 240 (329)
++++. .++|+||||||.+...+.+..|+++| ++||+++|.+. ++| +||+|||++.|... ++|+|+||
T Consensus 72 ----~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~-~~~~~~~v~~vN~~~~~~~--~~v~~~sC 140 (341)
T PRK04207 72 ----IEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKA-EVAGVSFNALANYEEALGK--DYVRVVSC 140 (341)
T ss_pred ----hhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCC-CCCCCcEEeeECHHHhCCC--CcEEccCh
Confidence 33322 27999999999999999999999999 78999998654 443 47999999999764 48999999
Q ss_pred hhhhhhhHHHhhhhhcCceEEEEEEEeeccCCCCCCCCCcchhhhhccccccCCC
Q 020217 241 TTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQALGCFTQGLEESESCSVEHCPN 295 (329)
Q Consensus 241 TTn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~d~~r~r~a~~~i~p~ 295 (329)
|||||+|+||+|+++|||+++.|||||++|. + +|++ |++.++|+|.
T Consensus 141 tT~~l~~~l~~L~~~fgI~~~~vTtv~a~td------~-~~~~--r~~~~niip~ 186 (341)
T PRK04207 141 NTTGLCRTLCALDRAFGVKKVRATLVRRAAD------P-KEVK--RGPINAIVPD 186 (341)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEEEEEcCCC------c-chhh--HHHhcCcCCC
Confidence 9999999999999999999999999999993 3 4663 8889999985
No 22
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.93 E-value=3.4e-26 Score=221.32 Aligned_cols=179 Identities=23% Similarity=0.325 Sum_probs=145.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
+||+|.| .|.+|+.++|+|.++..+.++++++... .. .++.+.++|..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~-------------~~-----------~g~~l~~~g~~i~v~--- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA-------------RS-----------AGKELSFKGKELKVE--- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc-------------cc-----------CCCeeeeCCceeEEe---
Confidence 5899999 9999999999998865555676655321 10 234455666666663
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCccccCCC-CCceEEcCCch
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VANIVSNASCT 241 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP---sk~~DiP~iV~GVN~~~~~~~-~~~IISnASCT 241 (329)
+++..+|. ++|+||+|+|.+.+++.+++|+++|+ +||+.+ ..++++|++|+|||++.|+.. +++|||||+|+
T Consensus 55 d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C~ 130 (334)
T PRK14874 55 DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNCS 130 (334)
T ss_pred eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccHH
Confidence 44555785 89999999999999999999999999 788433 454478999999999999753 14799999999
Q ss_pred hhhhhhHHHhhhhhcCceEEEEEEEeeccC------------CCCCCC-C---CcchhhhhccccccCCCc
Q 020217 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTG------------DQALGC-F---TQGLEESESCSVEHCPNE 296 (329)
Q Consensus 242 Tn~LaPvlKvL~d~fGI~~g~vTTvHa~T~------------dQ~l~D-~---~~d~~r~r~a~~~i~p~~ 296 (329)
|+|++|.|++|+++|+|+++.|||+|++|+ +|+++| + ++++|+.|+++.|++|-.
T Consensus 131 ~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~ 201 (334)
T PRK14874 131 TIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHI 201 (334)
T ss_pred HHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcC
Confidence 999999999999999999999999999996 777777 3 468999999999999975
No 23
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=99.92 E-value=7.4e-25 Score=213.04 Aligned_cols=177 Identities=23% Similarity=0.301 Sum_probs=138.7
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
||+|+| .|.+|+.++|+|.++..+.++++.+... +. .+..+.+.|+.+.+... +
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~-------------~~-----------~g~~~~~~~~~~~~~~~-~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD-------------RS-----------AGRKVTFKGKELEVNEA-K 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc-------------cc-----------CCCeeeeCCeeEEEEeC-C
Confidence 689999 9999999999998764444554333111 10 24455566655444322 2
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCccccCCC-CCceEEcCCchh
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VANIVSNASCTT 242 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP---sk~~DiP~iV~GVN~~~~~~~-~~~IISnASCTT 242 (329)
+ ..|. ++|+||+|+|.+.+++.++.|+++|+ +||+.+ .+++|+|++|||||++.++.. .++|||||+|||
T Consensus 56 ~--~~~~--~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~ 129 (339)
T TIGR01296 56 I--ESFE--GIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST 129 (339)
T ss_pred h--HHhc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence 2 3453 89999999999999999999999999 688655 355578999999999998763 156999999999
Q ss_pred hhhhhHHHhhhhhcCceEEEEEEEeeccCC------------CCCCC-CCcc--------hhhhhccccccCCC
Q 020217 243 NCLAPFVKVMDEELGIVKGAMTTTHSYTGD------------QALGC-FTQG--------LEESESCSVEHCPN 295 (329)
Q Consensus 243 n~LaPvlKvL~d~fGI~~g~vTTvHa~T~d------------Q~l~D-~~~d--------~~r~r~a~~~i~p~ 295 (329)
+|++++|++|+++|+|+++.|||+|++|++ |++++ .+.| .++.|..+.||||-
T Consensus 130 t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~ 203 (339)
T TIGR01296 130 IQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPH 203 (339)
T ss_pred HHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCc
Confidence 999999999999999999999999999997 55566 4444 78899999999997
No 24
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.92 E-value=1.3e-24 Score=210.52 Aligned_cols=157 Identities=18% Similarity=0.238 Sum_probs=130.8
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 86 ~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
.++||| | +|.+||.++++|.+|++ + +.+. +||. |. + .+ .++++.++|+.+.|.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~f---p---v~~l-------~l~~--s~---~---~s--~gk~i~f~g~~~~V~-- 56 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDL---E---IEQI-------SIVE--IE---P---FG--EEQGIRFNNKAVEQI-- 56 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCC---c---hhhe-------eecc--cc---c---cc--CCCEEEECCEEEEEE--
Confidence 368999 9 99999999999999864 4 3322 3432 21 0 01 367899999999994
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCC-CCCceEEcCCc
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDH-EVANIVSNASC 240 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPs---k~~DiP~iV~GVN~~~~~~-~~~~IISnASC 240 (329)
+.++.+|. |+|||++ +|...++++++...++|+ +||+..+ +++|+|++||+||.+.+.. .+.+||+||+|
T Consensus 57 -~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNC 130 (322)
T PRK06901 57 -APEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDP 130 (322)
T ss_pred -ECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcH
Confidence 45566775 8999999 999999999999999999 8997664 8889999999999998775 22579999999
Q ss_pred hhhhhhhHHHhhhhhcCceEEEEEEEeeccCCCC
Q 020217 241 TTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQA 274 (329)
Q Consensus 241 TTn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~ 274 (329)
||.+|+++|++||+.|||++..||||||+|+..+
T Consensus 131 sTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~ 164 (322)
T PRK06901 131 QVSQLALALAPFLQEQPLSQIFVTSLLPASYTDA 164 (322)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCH
Confidence 9999999999999999999999999999999875
No 25
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=99.87 E-value=4.9e-22 Score=195.72 Aligned_cols=159 Identities=15% Similarity=0.121 Sum_probs=126.1
Q ss_pred eeEEEEc-CChhHHHHHHHHH-hCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 87 LKVAING-FGRIGRNFLRCWH-GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~-~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
+||||+| +|.+|+.++++|. ++.++..++ ++| .|.. + ++..+.++|+.+.|..
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~-------------~~~--ss~~-------s--~g~~~~f~~~~~~v~~- 55 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRP-------------VFF--STSQ-------L--GQAAPSFGGTTGTLQD- 55 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccE-------------EEE--Echh-------h--CCCcCCCCCCcceEEc-
Confidence 3799999 9999999999888 554422222 222 1210 1 3556778888776633
Q ss_pred CCCCCC-CCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCCC-CCce--EEc
Q 020217 165 RDPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHE-VANI--VSN 237 (329)
Q Consensus 165 ~~P~~i-dW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPs---k~~DiP~iV~GVN~~~~~~~-~~~I--ISn 237 (329)
.+++ .|. ++||||+|.|...+++++++..++|...+||++.+ +++|+|++|++||++.+... +.+| |+|
T Consensus 56 --~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ian 131 (366)
T TIGR01745 56 --AFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVG 131 (366)
T ss_pred --Cccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEEC
Confidence 3333 554 89999999999999999999999995448897764 88899999999999987652 2567 899
Q ss_pred CCchhhhhhhHHHhhhhhcCceEEEEEEEeeccCCCC
Q 020217 238 ASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQA 274 (329)
Q Consensus 238 ASCTTn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~ 274 (329)
|+|||..|+++|++||+.|||+++.||||||+|+..+
T Consensus 132 PNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~ 168 (366)
T TIGR01745 132 GNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGA 168 (366)
T ss_pred cCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCH
Confidence 9999999999999999999999999999999999884
No 26
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.87 E-value=1e-21 Score=190.93 Aligned_cols=162 Identities=27% Similarity=0.371 Sum_probs=130.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCe-EEECCeEEEEEec
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNET-ISVDGKLIKVVSN 164 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~-L~inGk~I~V~~~ 164 (329)
+||||.| +|.+|+.+++.|.++.+ .++.+ ++|. |. -+ .|++ +.+.|+.+.+..
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f-~~~~~------------~~~A--S~-------rS--aG~~~~~f~~~~~~v~~- 56 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHF-PFEEL------------VLLA--SA-------RS--AGKKYIEFGGKSIGVPE- 56 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCC-CcceE------------EEEe--cc-------cc--cCCccccccCccccCcc-
Confidence 6899999 99999999999998743 23321 2221 21 12 2344 778887766622
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCCC-CCc-eEEcCC
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHE-VAN-IVSNAS 239 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPs---k~~DiP~iV~GVN~~~~~~~-~~~-IISnAS 239 (329)
.-.+.++|. ++||||+|.|...+++.+++..++|+ +||++.| +++|+|+||++||.+.+... +.+ ||+||+
T Consensus 57 ~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpN 132 (334)
T COG0136 57 DAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPN 132 (334)
T ss_pred ccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECCC
Confidence 225667887 89999999999999999999999998 9997764 78899999999999976542 135 999999
Q ss_pred chhhhhhhHHHhhhhhcCceEEEEEEEeeccCCCC-CCC
Q 020217 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQA-LGC 277 (329)
Q Consensus 240 CTTn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~-l~D 277 (329)
|||..|++.||+|+++|||++.+|+||||+|+... -++
T Consensus 133 Cst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~ 171 (334)
T COG0136 133 CSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGV 171 (334)
T ss_pred hHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchh
Confidence 99999999999999999999999999999999888 555
No 27
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.78 E-value=2.5e-18 Score=167.86 Aligned_cols=159 Identities=21% Similarity=0.273 Sum_probs=129.0
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~ 163 (329)
+++||||.| +|.+|+.++|+|.++..+.++++.+... + + .|+.+.++|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~-------------~---------s--aG~~~~~~~~~~~v~- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE-------------E---------S--AGETLRFGGKSVTVQ- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc-------------C---------c--CCceEEECCcceEEE-
Confidence 457999999 9999999999999876566676555221 1 1 356677777766663
Q ss_pred cCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCccccCC-CCCceEEcCC
Q 020217 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVSNAS 239 (329)
Q Consensus 164 ~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP---sk~~DiP~iV~GVN~~~~~~-~~~~IISnAS 239 (329)
++++++|. ++|+||.++|...+++.++..+++|+ +||+.. ..++|+|.++|+||.+.++. .+.+||+||+
T Consensus 58 --~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnPg 131 (336)
T PRK08040 58 --DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVAD 131 (336)
T ss_pred --eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECCC
Confidence 56778886 79999999999999999999999999 677654 35558999999999944432 1157999999
Q ss_pred chhhhhhhHHHhhhhhcCceEEEEEEEeeccCCCC
Q 020217 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQA 274 (329)
Q Consensus 240 CTTn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~ 274 (329)
|+|++++..|+||+++++|++..|+|++++|+..+
T Consensus 132 C~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~ 166 (336)
T PRK08040 132 SLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGK 166 (336)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEeeccccccCh
Confidence 99999999999999999999999999999999886
No 28
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.78 E-value=2.4e-18 Score=168.66 Aligned_cols=158 Identities=18% Similarity=0.333 Sum_probs=125.8
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 86 ~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
.+||||+| +|.+|+.++|+|.+.. .+++ .++ +++ .|.. + .++.+.+.|+.+.+..
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~--~f~v---~~l-------~~~--aS~~-------s--aGk~~~~~~~~l~v~~- 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKET--KFNI---AEV-------TLL--SSKR-------S--AGKTVQFKGREIIIQE- 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCC--CCCc---ccE-------EEE--ECcc-------c--CCCCeeeCCcceEEEe-
Confidence 47999999 9999999999998542 3552 111 111 2211 1 3667778887766643
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCccccCCCCCceEEcCCch
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHEVANIVSNASCT 241 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP---sk~~DiP~iV~GVN~~~~~~~~~~IISnASCT 241 (329)
-+++ .|. ++|+||.++|...+++.+++..++|+ +||+.. .+++|+|++|++||.+.+... .+||+||+|+
T Consensus 61 ~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~-~~iIanPnC~ 133 (347)
T PRK06728 61 AKIN--SFE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEH-KGIIAVPNCS 133 (347)
T ss_pred CCHH--Hhc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhcc-CCEEECCCCH
Confidence 3454 353 79999999999999999999999998 778654 367789999999999988764 4799999999
Q ss_pred hhhhhhHHHhhhhhcCceEEEEEEEeeccCCCC
Q 020217 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQA 274 (329)
Q Consensus 242 Tn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~ 274 (329)
|++++..|++|+++|+|++..|+|++++|+..+
T Consensus 134 tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~ 166 (347)
T PRK06728 134 ALQMVTALQPIRKVFGLERIIVSTYQAVSGSGI 166 (347)
T ss_pred HHHHHHHHHHHHHcCCccEEEEEEeecccccch
Confidence 999999999999999999999999999999876
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.77 E-value=2.4e-18 Score=169.91 Aligned_cols=160 Identities=18% Similarity=0.097 Sum_probs=122.7
Q ss_pred eeEEEEc-CChhHHHHHH-HHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 87 LKVAING-FGRIGRNFLR-CWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR-~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
++|||+| +|.+|+.++| +|.++.++..+++.. .|.+ + ++..+.++|+...++..
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~---------------ss~~-------s--g~~~~~f~g~~~~v~~~ 57 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFF---------------STSQ-------A--GGAAPSFGGKEGTLQDA 57 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEe---------------cchh-------h--CCcccccCCCcceEEec
Confidence 6999999 9999999998 555543211112221 1211 0 22334577777667554
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccCCC-CC--ceEEcC
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHE-VA--NIVSNA 238 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPs---k~~DiP~iV~GVN~~~~~~~-~~--~IISnA 238 (329)
.+++. |. ++|+||+++|...+++++++..++|++.+||+..+ +++|+|++||+||.+.+... +. ++|+||
T Consensus 58 ~~~~~--~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanP 133 (369)
T PRK06598 58 FDIDA--LK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGG 133 (369)
T ss_pred CChhH--hc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcC
Confidence 44443 43 79999999999999999999999996557897653 77799999999999987642 12 489999
Q ss_pred CchhhhhhhHHHhhhhhcCceEEEEEEEeeccCCCC
Q 020217 239 SCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQA 274 (329)
Q Consensus 239 SCTTn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~ 274 (329)
+|+|++++..|++|++.++|+++.|+|++++|+..+
T Consensus 134 nC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~ 169 (369)
T PRK06598 134 NCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGA 169 (369)
T ss_pred ChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCH
Confidence 999999999999999999999999999999999886
No 30
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.73 E-value=4.4e-17 Score=159.37 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=124.7
Q ss_pred ccCeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEE
Q 020217 83 TVAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (329)
Q Consensus 83 ~~~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V 161 (329)
+..++||+|.| .|.+|+.++|+|.++..+.++++.+... + + .++.+..+|+.+.+
T Consensus 4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~-------------r---------s--aGk~~~~~~~~~~v 59 (344)
T PLN02383 4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA-------------R---------S--AGKKVTFEGRDYTV 59 (344)
T ss_pred cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc-------------C---------C--CCCeeeecCceeEE
Confidence 45668999999 9999999999998865555555444211 0 0 23445555654444
Q ss_pred EecCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCccccCCC-----CCc
Q 020217 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-----VAN 233 (329)
Q Consensus 162 ~~~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP---sk~~DiP~iV~GVN~~~~~~~-----~~~ 233 (329)
. .-+++ +|. ++|+||.++|...+++++++..++|+ +||+.. .+++++|.+||+||.+.+... +.+
T Consensus 60 ~-~~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~ 132 (344)
T PLN02383 60 E-ELTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGA 132 (344)
T ss_pred E-eCCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCc
Confidence 2 22333 343 79999999999999999998888998 567554 356689999999999988653 134
Q ss_pred eEEcCCchhhhhhhHHHhhhhhcCceEEEEEEEeeccCCCC
Q 020217 234 IVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQA 274 (329)
Q Consensus 234 IISnASCTTn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~ 274 (329)
||+||+|+|.+++..|++|+++++|++..|+|++++|+..+
T Consensus 133 iIanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~ 173 (344)
T PLN02383 133 LIANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGA 173 (344)
T ss_pred EEECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCH
Confidence 99999999999999999999999999999999999999887
No 31
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.72 E-value=3.5e-17 Score=159.39 Aligned_cols=186 Identities=24% Similarity=0.314 Sum_probs=126.3
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE-eCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEE
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV-NDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaI-nd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~ 162 (329)
|++||+|+| +|.+|+.++|+|.++ +.++++.+ ........ . ++..++ |.+.... .+. + +.+.+.
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~~~G~---~--~~~~~~-~~~~~~~-~~~-~----~~~~v~ 67 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASERSAGK---T--YGEAVR-WQLDGPI-PEE-V----ADMEVV 67 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChhhcCC---c--cccccc-ccccccc-ccc-c----cceEEE
Confidence 468999999 999999999999865 46888888 43211100 0 111110 0000000 000 0 122332
Q ss_pred ecCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC-CCCCCCCeEEeccCccccCC-C--------CC
Q 020217 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNEKDYDH-E--------VA 232 (329)
Q Consensus 163 ~~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP-sk~~DiP~iV~GVN~~~~~~-~--------~~ 232 (329)
..+|+. |. ++|+|+++++.....+.++..+++|++.|.+|+. ...+++|.+++++|++.|.. + +.
T Consensus 68 -~~~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~~ 142 (349)
T PRK08664 68 -STDPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDG 142 (349)
T ss_pred -eCCHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCCc
Confidence 234544 32 7899999999998888887777889855444442 23336899999999986631 0 02
Q ss_pred ceEEcCCchhhhhhhHHHhhhhhcCceEEEEEEEeeccCCCCCCCCCcchhhhhccccccCCCc
Q 020217 233 NIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQALGCFTQGLEESESCSVEHCPNE 296 (329)
Q Consensus 233 ~IISnASCTTn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~d~~r~r~a~~~i~p~~ 296 (329)
+|||||+|+|+|+++.|++|++ |||+++.|+|+|++|++++-.. +.++.+.|++|-.
T Consensus 143 ~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~~------~~~~~~~N~~p~~ 199 (349)
T PRK08664 143 FIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPGV------PSMDIVDNVIPYI 199 (349)
T ss_pred eEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCcccc------hhhhhhcCccccc
Confidence 5999999999999999999999 9999999999999999987432 1446788888843
No 32
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.72 E-value=4e-17 Score=158.54 Aligned_cols=184 Identities=21% Similarity=0.249 Sum_probs=126.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccc--cCceEEEecCCeEEECCeEEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGT--FKADVKIVDNETISVDGKLIKVVS 163 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~--F~g~V~v~~~~~L~inGk~I~V~~ 163 (329)
+||+|+| .|.+|+.++|+|.++ +.++++++-+.. +..... +...+.. |.+. ...+ ..+.+ +
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~--~~~~l~~v~~~~--~~~g~~--~~~~~~~~~~~~~-----~~~~----~~~~~-~ 64 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH--PYFELAKVVASP--RSAGKR--YGEAVKWIEPGDM-----PEYV----RDLPI-V 64 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCceEEEEEECh--hhcCCc--chhhccccccCCC-----cccc----ceeEE-E
Confidence 4899999 899999999999876 347888774320 000000 0011100 0000 0000 11222 2
Q ss_pred cCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC-CCCCCCCeEEeccCccccCCC--------CCce
Q 020217 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNEKDYDHE--------VANI 234 (329)
Q Consensus 164 ~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP-sk~~DiP~iV~GVN~~~~~~~--------~~~I 234 (329)
..+++ .| .++|+|+++++.....+.+...+++|++.+.+|+. ..++++|.+++++|++.|... +.+|
T Consensus 65 ~~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~i 140 (341)
T TIGR00978 65 EPEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFI 140 (341)
T ss_pred eCCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccE
Confidence 22333 34 37999999999999999998888899965444543 345578999999999876521 1359
Q ss_pred EEcCCchhhhhhhHHHhhhhhcCceEEEEEEEeeccCCCCCCCCCcchhhhhccccccCCCc
Q 020217 235 VSNASCTTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQALGCFTQGLEESESCSVEHCPNE 296 (329)
Q Consensus 235 ISnASCTTn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D~~~d~~r~r~a~~~i~p~~ 296 (329)
|+||+|+|+|+++.|++|+++++|+++.|+|+|++|+.|+....+ +..+.|++|-.
T Consensus 141 VanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~~~------~~~~~Ni~py~ 196 (341)
T TIGR00978 141 VTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGVPS------MDILDNIIPHI 196 (341)
T ss_pred EeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCCcc------chhhCCeEecC
Confidence 999999999999999999999999999999999999999864322 23466777654
No 33
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.71 E-value=8.2e-17 Score=157.10 Aligned_cols=159 Identities=19% Similarity=0.255 Sum_probs=124.3
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 86 ~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
++||+|.| +|.+|+.++|+|.++..+.++++.+... .+ .++.|.++|+.+.+.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~------------~~------------aG~~l~~~~~~l~~~-- 57 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS------------ES------------AGHSVPFAGKNLRVR-- 57 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc------------cc------------CCCeeccCCcceEEe--
Confidence 37999999 9999999999999765555666555432 01 234455556555552
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCccccCC-CCCceEEcCCc
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVSNASC 240 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP---sk~~DiP~iV~GVN~~~~~~-~~~~IISnASC 240 (329)
+++..+|. ++|+||.+++.....++++..+++|+ +||+.. ..+ ++|.+||+||.+.++. .+.+||+||+|
T Consensus 58 -~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~-~~pl~lPEvn~~~i~~~~~~~iIAnPgC 131 (336)
T PRK05671 58 -EVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSA-QAPNVVPEVNAERLASLAAPFLVSSPSA 131 (336)
T ss_pred -eCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCC-CCCEEecccCHHHHccccCCCEEECCCc
Confidence 23334463 89999999999888899998889998 456443 354 8999999999998875 22579999999
Q ss_pred hhhhhhhHHHhhhhhcCceEEEEEEEeeccCCCCCC
Q 020217 241 TTNCLAPFVKVMDEELGIVKGAMTTTHSYTGDQALG 276 (329)
Q Consensus 241 TTn~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~ 276 (329)
+|+++...|++|++.|++++..|+|++++|+..+-.
T Consensus 132 ~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~ 167 (336)
T PRK05671 132 SAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREG 167 (336)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCccc
Confidence 999999999999999999999999999999988743
No 34
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=99.57 E-value=1.3e-15 Score=134.25 Aligned_cols=54 Identities=35% Similarity=0.513 Sum_probs=50.2
Q ss_pred hhhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-CCcchhhhhccccccCCCchh
Q 020217 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQALGC-FTQGLEESESCSVEHCPNEHR 298 (329)
Q Consensus 245 LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~~~d~~r~r~a~~~i~p~~~~ 298 (329)
|+|++|+|+|+|||++|+|||||+||++|+++| +++||||+|+++|||||...-
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~~d~rrgr~a~~niip~~t~ 55 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPHKDWRRGRAAAQNIIPTSTG 55 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS--SSTGTTSBTTTSSEEEEES
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeeccccccccccccccccccccc
Confidence 799999999999999999999999999999999 889999999999999998764
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.54 E-value=6.2e-14 Score=136.63 Aligned_cols=164 Identities=18% Similarity=0.151 Sum_probs=118.6
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~ 163 (329)
|++||+|.| .|.+|+.++|.|.++ ++++++++-+... ....+ ...|+.+.+. . ...+ .
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~---~g~~l--~~~~~~~~~~----------~---~~~~-~ 59 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSS---AGKPL--SDVHPHLRGL----------V---DLVL-E 59 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECccc---cCcch--HHhCcccccc----------c---Ccee-e
Confidence 347999999 799999999999865 4688888765311 00000 0111111100 0 0111 1
Q ss_pred cCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCC-C------------------CCeEEec
Q 020217 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGA-D------------------IPTYVVG 221 (329)
Q Consensus 164 ~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPs---k~~-D------------------iP~iV~G 221 (329)
+.++..|. ++|+|+.|++.....+.+...+++|+ +||+..+ .++ | +|..+++
T Consensus 60 --~~~~~~~~--~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe 133 (343)
T PRK00436 60 --PLDPEILA--GADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPE 133 (343)
T ss_pred --cCCHHHhc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCc
Confidence 12222333 69999999999999999998888887 7786543 432 4 7899999
Q ss_pred cCccccCCCCCceEEcCCchhhhhhhHHHhhhhhcCce--EEEEEEEeeccCCCC-CCC
Q 020217 222 VNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIV--KGAMTTTHSYTGDQA-LGC 277 (329)
Q Consensus 222 VN~~~~~~~~~~IISnASCTTn~LaPvlKvL~d~fGI~--~g~vTTvHa~T~dQ~-l~D 277 (329)
+|.+.+.. .+||+||+|+|+++...|++|++..+|+ +.+|+|++++|+..+ ..+
T Consensus 134 ~~~~~i~~--~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~ 190 (343)
T PRK00436 134 LNREEIKG--ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASE 190 (343)
T ss_pred cCHHHhcC--CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccc
Confidence 99998875 4899999999999999999999998898 899999999999887 445
No 36
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.47 E-value=2.6e-13 Score=132.56 Aligned_cols=164 Identities=17% Similarity=0.148 Sum_probs=115.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
+||+|.| +|.+|+.++|.|.++ +.++++++-+... ..... +...|+.+.+. . ...+ ...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~--sagk~--~~~~~~~l~~~----------~---~~~~-~~~ 60 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRE--SAGKP--VSEVHPHLRGL----------V---DLNL-EPI 60 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccch--hcCCC--hHHhCcccccc----------C---Ccee-ecC
Confidence 4899999 799999999999865 5678876522200 00000 01111111100 0 0111 112
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCC-------------------CCCeEEeccC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGA-------------------DIPTYVVGVN 223 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP---sk~~-------------------DiP~iV~GVN 223 (329)
+++ +|.+ ++|+||.|++.....+.+...+++|+ +||+.. ..++ ++|..++++|
T Consensus 61 ~~~--~~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n 135 (346)
T TIGR01850 61 DEE--EIAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELH 135 (346)
T ss_pred CHH--Hhhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccC
Confidence 222 2322 78999999999999999999888886 566543 2443 5899999999
Q ss_pred ccccCCCCCceEEcCCchhhhhhhHHHhhhhhcCce--EEEEEEEeeccCCCC-CCC
Q 020217 224 EKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIV--KGAMTTTHSYTGDQA-LGC 277 (329)
Q Consensus 224 ~~~~~~~~~~IISnASCTTn~LaPvlKvL~d~fGI~--~g~vTTvHa~T~dQ~-l~D 277 (329)
.+.+.. .+||+||+|.|+++...|+||++++.|+ +..|+|++++|+..+ ..+
T Consensus 136 ~~~i~~--~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~ 190 (346)
T TIGR01850 136 REEIKG--ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASP 190 (346)
T ss_pred HHHhCC--CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccc
Confidence 998865 5799999999999999999999998887 799999999999988 444
No 37
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.41 E-value=1.9e-12 Score=128.57 Aligned_cols=165 Identities=11% Similarity=0.056 Sum_probs=113.2
Q ss_pred cCeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEE
Q 020217 84 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (329)
Q Consensus 84 ~~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~ 162 (329)
.+++||+|.| +|.+|+.++|+|.++ +.++++.+... +..|+- +.. .... +.+..+.-+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~h--P~~el~~l~s~-------------~saG~~---i~~-~~~~--l~~~~~~~~ 94 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANH--PDFEITVMTAD-------------RKAGQS---FGS-VFPH--LITQDLPNL 94 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhC--CCCeEEEEECh-------------hhcCCC---chh-hCcc--ccCccccce
Confidence 4667999999 999999999999987 45777666431 111110 000 0000 111111111
Q ss_pred ecCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCC--------CCeEEeccCccc-cCC-
Q 020217 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGAD--------IPTYVVGVNEKD-YDH- 229 (329)
Q Consensus 163 ~~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP---sk~~D--------iP~iV~GVN~~~-~~~- 229 (329)
..-++ .+|. ++|+||.++|.....+.++. ++.|+ +||+.. ..+++ +|..++++|.+. |.-
T Consensus 95 ~~~~~--~~~~--~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglp 167 (381)
T PLN02968 95 VAVKD--ADFS--DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLT 167 (381)
T ss_pred ecCCH--HHhc--CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccc
Confidence 11122 2343 79999999999888888877 57775 456433 34546 788888888773 430
Q ss_pred -------CCCceEEcCCchhhhhhhHHHhhhhhcCc--eEEEEEEEeeccCCCCCC
Q 020217 230 -------EVANIVSNASCTTNCLAPFVKVMDEELGI--VKGAMTTTHSYTGDQALG 276 (329)
Q Consensus 230 -------~~~~IISnASCTTn~LaPvlKvL~d~fGI--~~g~vTTvHa~T~dQ~l~ 276 (329)
.+.+||+||+|.|+++...|++|+++++| ++..|+|++++|+..+-.
T Consensus 168 E~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~ 223 (381)
T PLN02968 168 ELQREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGA 223 (381)
T ss_pred hhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCccc
Confidence 12579999999999999999999999999 789999999999998744
No 38
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.41 E-value=1.4e-12 Score=126.63 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=108.9
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~ 163 (329)
|++||||.| +|-+|+.++|+|.+++ .++++.+... ++..+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp--~~~l~~~~s~--------------------------~~~~~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRS--DIELLSIPEA--------------------------KRKDA----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCC--CeEEEEEecC--------------------------CCCcc-----------
Confidence 568999999 9999999999999874 5777665321 01101
Q ss_pred cCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCccccCC-CCCceEEcCC
Q 020217 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVSNAS 239 (329)
Q Consensus 164 ~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP---sk~~DiP~iV~GVN~~~~~~-~~~~IISnAS 239 (329)
.+.+..|. ++|+||.+++...+++++++..+.|+ +||+.. ..++++|..++++|.+..+. ...++|+||.
T Consensus 42 --~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPg 115 (313)
T PRK11863 42 --AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPG 115 (313)
T ss_pred --cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCC
Confidence 11122454 68999999999999999998888898 567554 35568999999998653321 1157999999
Q ss_pred chhhhhhhHHHhhhhhcCceEEEEEEEeecc---CCCC
Q 020217 240 CTTNCLAPFVKVMDEELGIVKGAMTTTHSYT---GDQA 274 (329)
Q Consensus 240 CTTn~LaPvlKvL~d~fGI~~g~vTTvHa~T---~dQ~ 274 (329)
|.++++...|+||+++..|++..+++++++| +..+
T Consensus 116 C~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SGAG~ 153 (313)
T PRK11863 116 CYPTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGK 153 (313)
T ss_pred cHHHHHHHHHHHHHHcCCcccCceEEEEEccccccCCc
Confidence 9999999999999997556565578899995 5544
No 39
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.35 E-value=3.6e-12 Score=123.34 Aligned_cols=166 Identities=23% Similarity=0.179 Sum_probs=115.8
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
+++||||+|+|.||+.++..+.+. +.++++++-|. |++... +++...+|. .. ..+|-. .++
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~--~~velvAVvdi-d~es~g--la~A~~~Gi---~~--------~~~~ie-~LL-- 63 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRS--EHLEPGAMVGI-DPESDG--LARARRLGV---AT--------SAEGID-GLL-- 63 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcC--CCcEEEEEEeC-ChhhHH--HHHHHHcCC---Cc--------ccCCHH-HHH--
Confidence 358999999999999888777653 56999999886 333211 111111221 00 011100 011
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCC-CCceEEcCCchhh
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHE-VANIVSNASCTTN 243 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~-~~~IISnASCTTn 243 (329)
+..+|. ++|+|+++||.....+.+.+.+++|+ .||...+.- ..|++||+||.+.+... ..++|++++|+|+
T Consensus 64 ---~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~-~~PlvVP~VN~~~~~~~~~~~iia~p~~ati 135 (302)
T PRK08300 64 ---AMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAA-IGPYCVPAVNLDEHLDAPNVNMVTCGGQATI 135 (302)
T ss_pred ---hCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccc-cCCcccCcCCHHHHhcccCCCEEECccHHHH
Confidence 122454 68999999999999999999999998 566543322 68999999999976542 1589999999999
Q ss_pred hhhhHHHhhhhhcCceEEEEEEEeecc-C--CCCCCC-CC
Q 020217 244 CLAPFVKVMDEELGIVKGAMTTTHSYT-G--DQALGC-FT 279 (329)
Q Consensus 244 ~LaPvlKvL~d~fGI~~g~vTTvHa~T-~--dQ~l~D-~~ 279 (329)
.++..|++|++. ++.+.. +||.|.+ + +..-+| |.
T Consensus 136 ~~v~Al~~v~~~-~~~eIv-at~~s~s~g~gtr~nidE~~ 173 (302)
T PRK08300 136 PIVAAVSRVAPV-HYAEIV-ASIASKSAGPGTRANIDEFT 173 (302)
T ss_pred HHHHHhcccCcC-ceeeee-eeehhhccCCcccccHHHHH
Confidence 999999998765 888876 8999998 3 344566 54
No 40
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.29 E-value=2.6e-12 Score=122.24 Aligned_cols=167 Identities=21% Similarity=0.317 Sum_probs=115.4
Q ss_pred eEE-EEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 88 KVA-ING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 88 kVa-InG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
|+| |.| +|.+|..++-+|.+++ .+++-+..-. .++-=-+|. ..|+|..+.-.-+ .-..+.| .+-
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP--~f~ikvLgAS----~RSAGK~ya-~a~~wkqt~~lp~------~~~e~~V-~ec 70 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHP--YFSIKVLGAS----KRSAGKRYA-FAGNWKQTDLLPE------SAHEYTV-EEC 70 (361)
T ss_pred cccceeeccchhHHHHHHHhccCC--cceeeeeccc----ccccCCceE-ecccchhcccccc------hhhhhhH-hhc
Confidence 455 899 9999999999988774 4454333211 000000111 1133332221100 0022333 334
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCccccCC----------CCC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH----------EVA 232 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP---sk~~DiP~iV~GVN~~~~~~----------~~~ 232 (329)
+++.|. +.|||+...+.....|--+...++|. +|+|.. ...+++|++||.||.|.++. .+-
T Consensus 71 ~~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G 144 (361)
T KOG4777|consen 71 TADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKG 144 (361)
T ss_pred Chhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCc
Confidence 666664 89999999999888887778888998 888764 35568999999999996542 223
Q ss_pred ceEEcCCchhhhhhhHHHhhhhhc-CceEEEEEEEeeccCCCC
Q 020217 233 NIVSNASCTTNCLAPFVKVMDEEL-GIVKGAMTTTHSYTGDQA 274 (329)
Q Consensus 233 ~IISnASCTTn~LaPvlKvL~d~f-GI~~g~vTTvHa~T~dQ~ 274 (329)
-||.|++|+|..+...||+||++| .|++..++|+|+.++..-
T Consensus 145 ~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~ 187 (361)
T KOG4777|consen 145 AIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGA 187 (361)
T ss_pred eEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCc
Confidence 599999999999999999999999 599999999999999765
No 41
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.22 E-value=5.8e-11 Score=115.35 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=106.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
.||+|.| .|-.|..++|+|..+ +.++++.+... + .| ...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H--P~~el~~l~s~-------------~---~~----------------------~~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR--DDIELLSIAPD-------------R---RK----------------------DAA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC--CCeEEEEEecc-------------c---cc----------------------CcC
Confidence 4899999 999999999999887 56887777431 0 00 001
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeccCccccCC-CCCceEEcCCch
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVSNASCT 241 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP---sk~~DiP~iV~GVN~~~~~~-~~~~IISnASCT 241 (329)
+++++ + .++|+||.+++...++++++...++|+ +||+.. ..+++.|..++++|.+..+. ...++|+||.|.
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 12222 1 168999999999999999988888888 567544 35568999999998653322 115899999999
Q ss_pred hhhhhhHHHhhhhhcCceEEEEEEEeeccC
Q 020217 242 TNCLAPFVKVMDEELGIVKGAMTTTHSYTG 271 (329)
Q Consensus 242 Tn~LaPvlKvL~d~fGI~~g~vTTvHa~T~ 271 (329)
++++...|+||.++..|++..++++++.|+
T Consensus 117 aTa~~LaL~PL~~~~li~~~~~~~~~a~SG 146 (310)
T TIGR01851 117 PTGFIALMRPLVEAGILPADFPITINAVSG 146 (310)
T ss_pred HHHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 999999999999986666666799999986
No 42
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.07 E-value=7.9e-10 Score=106.33 Aligned_cols=158 Identities=22% Similarity=0.190 Sum_probs=110.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
+||||+|.|+||+.++..+.+. +.+++++|-|. +++... +++...+|. ....++... ++.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~--~~~elvaV~d~-d~es~~--la~A~~~Gi-----------~~~~~~~e~-ll~--- 61 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS--EHLEMVAMVGI-DPESDG--LARARELGV-----------KTSAEGVDG-LLA--- 61 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC--CCcEEEEEEeC-CcccHH--HHHHHHCCC-----------CEEECCHHH-Hhc---
Confidence 6899999999999887766653 46899999886 333211 011111111 111111110 101
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEe-CCCCCCCCCeEEeccCccccCC-CCCceEEcCCchhhh
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGADIPTYVVGVNEKDYDH-EVANIVSNASCTTNC 244 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIIS-APsk~~DiP~iV~GVN~~~~~~-~~~~IISnASCTTn~ 244 (329)
+.++|+|+++|+.....+.+...+++|. .||. .|.. ..|++|+.||.+.... ...++|+++.|.|+.
T Consensus 62 -------~~dIDaV~iaTp~~~H~e~a~~al~aGk--~VIdekPa~--~~plvvp~VN~~~~~~~~~~~iv~c~~~atip 130 (285)
T TIGR03215 62 -------NPDIDIVFDATSAKAHARHARLLAELGK--IVIDLTPAA--IGPYVVPAVNLDEHLDAPNVNMVTCGGQATIP 130 (285)
T ss_pred -------CCCCCEEEECCCcHHHHHHHHHHHHcCC--EEEECCccc--cCCccCCCcCHHHHhcCcCCCEEEcCcHHHHH
Confidence 1268999999999999999999999997 4454 4442 6799999999987654 216899999999999
Q ss_pred hhhHHHhhhhhcCceEEEEEEEeeccC-C--CCCCC
Q 020217 245 LAPFVKVMDEELGIVKGAMTTTHSYTG-D--QALGC 277 (329)
Q Consensus 245 LaPvlKvL~d~fGI~~g~vTTvHa~T~-d--Q~l~D 277 (329)
+...++.+++...+ ..++||++.+. . ..-+|
T Consensus 131 ~~~al~r~~d~~~~--~iv~ti~s~S~g~g~r~~id 164 (285)
T TIGR03215 131 IVAAISRVAPVHYA--EIVASIASRSAGPGTRANID 164 (285)
T ss_pred HHHHHHHhhccccE--EEEEEEEeeccCCCchhHHH
Confidence 99999999998755 56788999996 3 34556
No 43
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.70 E-value=1.7e-08 Score=84.22 Aligned_cols=115 Identities=24% Similarity=0.271 Sum_probs=75.8
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
||+|.| +|.+|+.++|.|.++ +.++++.+-.... ..-.++...++.+.+ ...+.+.. .+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~----~~g~~~~~~~~~~~~-------------~~~~~~~~-~~ 60 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSR----SAGKPLSEVFPHPKG-------------FEDLSVED-AD 60 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTT----TTTSBHHHTTGGGTT-------------TEEEBEEE-TS
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeecc----ccCCeeehhcccccc-------------ccceeEee-cc
Confidence 799999 999999999999985 5688877755311 000112222221111 11222322 23
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC---CCCCCCeEEeccCccccC
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYD 228 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPs---k~~DiP~iV~GVN~~~~~ 228 (329)
++.+ .++|+||.|++.....+.++..++.|+ +||+..+ .+++.|+++++||.+.+.
T Consensus 61 ~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 61 PEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp GHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred hhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 3333 289999999999999999999999999 6776543 455789999999988763
No 44
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.76 E-value=8.5e-05 Score=61.48 Aligned_cols=113 Identities=28% Similarity=0.315 Sum_probs=66.6
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
||+|.| .|.+|+.+++.+.+. +.+++++|-.. + ......++ ..+++.. + + ++ .+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~--~~~~l~av~~~-~-~~~~~~~~--~~~~~~~--------------~--~-~~--~~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAAS-A-RSAGKRVS--EAGPHLK--------------G--E-VV--LE 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC--CCceEEEEEec-h-hhcCcCHH--HHCcccc--------------c--c-cc--cc
Confidence 689999 699999999988765 35788888332 1 00000000 0111100 0 0 01 11
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHH---HHHHcCCCEEEEeCC---CCCCCCCeEEeccCcccc
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAG---KHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDY 227 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~---~Hl~aGakkVIISAP---sk~~DiP~iV~GVN~~~~ 227 (329)
.+..+|.+.+.|+||.|++.-...+.+. ..++.|. +||+.. ..+++.|.+++++|.+.+
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 2223444458899999999887776433 2334565 778543 345578999999998754
No 45
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00014 Score=72.20 Aligned_cols=162 Identities=18% Similarity=0.257 Sum_probs=101.2
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~ 163 (329)
|++||+|.| .|-.|-.++|+|..+ +++++..+.... +.-.- +...|..+.|-+ ..++ +
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~H--p~ve~~~~ss~~---~~g~~--~~~~~p~l~g~~-------------~l~~-~ 59 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGH--PDVELILISSRE---RAGKP--VSDVHPNLRGLV-------------DLPF-Q 59 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcC--CCeEEEEeechh---hcCCc--hHHhCccccccc-------------cccc-c
Confidence 457999999 999999999999988 468865554320 00000 001121111110 0111 1
Q ss_pred cCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC----CCC---------------CCCeEEec---
Q 020217 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA----KGA---------------DIPTYVVG--- 221 (329)
Q Consensus 164 ~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPs----k~~---------------DiP~iV~G--- 221 (329)
.-+++++ ...++|+||.|+.--.+++.++..++.|.+ ||+..+ +++ ...--|||
T Consensus 60 ~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpE 135 (349)
T COG0002 60 TIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPE 135 (349)
T ss_pred cCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcc
Confidence 2334444 233689999999999999999999999995 564432 100 01245665
Q ss_pred cCccccCCCCCceEEcCCchhhhhhhHHHhhhhhcCc---eEE-EEEEEeeccCCCC
Q 020217 222 VNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGI---VKG-AMTTTHSYTGDQA 274 (329)
Q Consensus 222 VN~~~~~~~~~~IISnASCTTn~LaPvlKvL~d~fGI---~~g-~vTTvHa~T~dQ~ 274 (329)
+|.+++.. .+.|+||.|-.+|....|+||-++ || ... .+-.+=-||+..+
T Consensus 136 l~~e~i~~--A~lIAnPGCypTa~iLal~PL~~~-~ll~~~~~~ivdakSG~SGaGr 189 (349)
T COG0002 136 LHREKIRG--AKLIANPGCYPTAAILALAPLVKA-GLLDPDSPPIVDAKSGVSGAGR 189 (349)
T ss_pred cCHHHHhc--CCEeeCCCchHHHHHHHHHHHHHc-CCcCCCCceEEEEeEecCcCCC
Confidence 45556654 579999999999999999999876 43 332 4444555666655
No 46
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.67 E-value=9e-05 Score=71.20 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=64.6
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
|.+||||+|+|.||+.+++.|.......+++++|++. +.+....+. +. .++ .
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~-~~~~~~~~~-----------------~~--------~~~--~ 52 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN-AADLPPALA-----------------GR--------VAL--L 52 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC-CHHHHHHhh-----------------cc--------Ccc--c
Confidence 4579999999999999999886532345889999775 221111110 00 112 1
Q ss_pred CCCCCC-CCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 020217 165 RDPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (329)
Q Consensus 165 ~~P~~i-dW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIIS 207 (329)
.+++++ .| ..|+||||.|.-.-++++...|++|..-+|+|
T Consensus 53 ~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 53 DGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred CCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 334443 44 58999999999999999999999999877776
No 47
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.32 E-value=0.00024 Score=67.33 Aligned_cols=91 Identities=24% Similarity=0.275 Sum_probs=57.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCC-ChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~-d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
+||||.|+|+||+.+++.+... +++++++|-+.. ..+..... + +. + +.++ .
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~--~~~~l~~v~~~~~~~~~~~~~---------~--------~~-----~--~~~~--~ 53 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD--PDLRVDWVIVPEHSIDAVRRA---------L--------GE-----A--VRVV--S 53 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC--CCceEEEEEEcCCCHHHHhhh---------h--------cc-----C--Ceee--C
Confidence 6999999999999999988754 357776664321 11110000 0 00 1 2222 2
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP 209 (329)
+.+++ +..+|+|+|||+.....+.+...|++|.. |++-.|
T Consensus 54 d~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~ 93 (265)
T PRK13303 54 SVDAL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAVISV 93 (265)
T ss_pred CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeCh
Confidence 33444 23689999999998888899999999964 444333
No 48
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.18 E-value=0.0014 Score=64.41 Aligned_cols=37 Identities=30% Similarity=0.560 Sum_probs=30.1
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~-------~~~l~vVaInd~ 121 (329)
|.+||+|.|||.||+.+++.|.++. +.++++|+|-|.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 5689999999999999999987642 225899999774
No 49
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.14 E-value=0.00073 Score=64.12 Aligned_cols=95 Identities=22% Similarity=0.285 Sum_probs=58.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
+||+|+| +|++|+.+++.+.+. +++++|++-|..+.+.. .+|. +.+.+.. . .| +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~~~~~~~----~~~~--~~~~~~~----~-----~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFERHGSSLQ----GTDA--GELAGIG----K-----VG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCcccc----CCCH--HHhcCcC----c-----CC--ceee--C
Confidence 6999999 899999999998765 56999998773222111 0110 1110000 0 01 2221 2
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVII 206 (329)
+++++ ...+|+|||+|......+.+...+++|.. ||+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 33333 13579999999888788888888888864 444
No 50
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.04 E-value=0.0018 Score=63.90 Aligned_cols=88 Identities=20% Similarity=0.278 Sum_probs=60.0
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
++||+|+|+|.||+.+++++... +++++|+|-+..+.+.+. ... .++...
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~--pd~ELVgV~dr~~~~~~~------~~~----------------------~v~~~~ 52 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQ--PDMELVGVFSRRGAETLD------TET----------------------PVYAVA 52 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhC--CCcEEEEEEcCCcHHHHh------hcC----------------------CccccC
Confidence 48999999999999999998765 579999997763222211 000 111111
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIIS 207 (329)
+.+.+ . ..+|+|+-||+.....+.+...|++|.. ||-+
T Consensus 53 d~~e~--l-~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s 90 (324)
T TIGR01921 53 DDEKH--L-DDVDVLILCMGSATDIPEQAPYFAQFAN-TVDS 90 (324)
T ss_pred CHHHh--c-cCCCEEEEcCCCccCHHHHHHHHHcCCC-EEEC
Confidence 11111 1 3689999999999999999999999974 4444
No 51
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.81 E-value=0.004 Score=58.96 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=59.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
+||||+|+|+||+.+++.+.... ..+++++|-|. +.+....+.+ .| +. .++ .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~-~~~~a~~~a~------~~--------------~~---~~~--~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR-INAELYAFYDR-NLEKAENLAS------KT--------------GA---KAC--LS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECC-CHHHHHHHHH------hc--------------CC---eeE--CC
Confidence 68999999999999999887542 25788888776 3333322211 00 00 111 23
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP 209 (329)
.+++- .++|+|++|++...-.+.+...+++|.. |++..+
T Consensus 55 ~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv~s~ 93 (265)
T PRK13304 55 IDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VIIMSV 93 (265)
T ss_pred HHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEEEch
Confidence 33332 2689999999988777888888888864 444333
No 52
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.81 E-value=0.00031 Score=59.26 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=29.0
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 87 vkVaInGf-GRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
+||+|+|+ ||+||.+++.+.++ ++++++++-+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~ 34 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDR 34 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEET
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEec
Confidence 58999997 99999999999886 46999988775
No 53
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.67 E-value=0.0042 Score=59.01 Aligned_cols=92 Identities=24% Similarity=0.318 Sum_probs=60.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
++|+|+|.|+||..+++.+.+-. .+++++++-|. +.++.-.+.+ + +.++..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~-~~ek~~~~~~--~------------------~~~~~~------- 51 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDR-DEEKAKELEA--S------------------VGRRCV------- 51 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecC-CHHHHHHHHh--h------------------cCCCcc-------
Confidence 48999999999999999886422 45898888775 3333322221 1 111110
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISA 208 (329)
..+|=....+|++|||.+..--++...+.|++|..-+|+|-
T Consensus 52 -s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SV 92 (255)
T COG1712 52 -SDIDELIAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSV 92 (255)
T ss_pred -ccHHHHhhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEec
Confidence 11111113678999999988888888899999988777764
No 54
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.67 E-value=0.0037 Score=58.95 Aligned_cols=86 Identities=21% Similarity=0.253 Sum_probs=53.0
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 86 ~vkVaInGf-GRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
++||+|+|. |+||+.+++.+.+. ++++++++-|. +.+..... ..+ .+.+ .
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~-~~~~~~~~-------~~~-----------------~i~~--~ 51 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDR-PGSPLVGQ-------GAL-----------------GVAI--T 51 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEec-CCcccccc-------CCC-----------------Cccc--c
Confidence 369999996 99999999988764 45899998775 21111000 000 0111 1
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCE
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 203 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakk 203 (329)
.+.+++- . ++|+|||+|......+.+...+++|..-
T Consensus 52 ~dl~~ll-~--~~DvVid~t~p~~~~~~~~~al~~G~~v 87 (257)
T PRK00048 52 DDLEAVL-A--DADVLIDFTTPEATLENLEFALEHGKPL 87 (257)
T ss_pred CCHHHhc-c--CCCEEEECCCHHHHHHHHHHHHHcCCCE
Confidence 2222221 1 5788888887666677777788888643
No 55
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.58 E-value=0.006 Score=60.02 Aligned_cols=35 Identities=37% Similarity=0.685 Sum_probs=28.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhC-----CCCCceEEEEeCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR-----KDSPLDVVVVNDS 121 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r-----~~~~l~vVaInd~ 121 (329)
+||+|.|||.||+.+++.|.++ ...++++|+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 4899999999999999998764 1235889999774
No 56
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.55 E-value=0.0068 Score=57.76 Aligned_cols=87 Identities=22% Similarity=0.206 Sum_probs=57.2
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhc-cccccccccCceEEEecCCeEEECCeEEEEEe
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLL-kyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~ 163 (329)
+++||||+|+|+||+.+++.|... .+++++++|-|. +.+...-+. +|.. . ..
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr-~~~~a~~~a~~~g~-------~----------------~~-- 57 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVR-DPQRHADFIWGLRR-------P----------------PP-- 57 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECC-CHHHHHHHHHhcCC-------C----------------cc--
Confidence 358999999999999999988753 245899888776 333322111 1110 0 00
Q ss_pred cCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 164 ~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
..+++++-. .+|+|++|++...-.+.....+++|.
T Consensus 58 ~~~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk 92 (271)
T PRK13302 58 VVPLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGK 92 (271)
T ss_pred cCCHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCC
Confidence 022333321 57999999998887788888888885
No 57
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.47 E-value=0.0044 Score=60.94 Aligned_cols=37 Identities=32% Similarity=0.577 Sum_probs=29.8
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~-------~~~l~vVaInd~ 121 (329)
|+++|+|.|||.||+.+++.|.++. +-+++|++|.|.
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds 44 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDT 44 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 4689999999999999999987632 224889999774
No 58
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.46 E-value=0.0059 Score=60.53 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=29.5
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCC-------CCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKD-------SPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~-------~~l~vVaInd~ 121 (329)
+.+||+|.|||.||+.++|+|.++.. .++++++|-+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 56899999999999999999987642 24777777654
No 59
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.17 E-value=0.0086 Score=59.48 Aligned_cols=37 Identities=30% Similarity=0.528 Sum_probs=28.9
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~-------~~~l~vVaInd~ 121 (329)
|+++|+|.|||.||+.+++.|.++. +-+++|++|-+.
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 3589999999999999999987543 235778888653
No 60
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.16 E-value=0.01 Score=59.98 Aligned_cols=93 Identities=27% Similarity=0.399 Sum_probs=54.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeE
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKL 158 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~-------~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~ 158 (329)
++||||.|+|.||+.+++.|.++. +.++++++|-+. +.+... -+. ..+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~-~~~~~~-~~~---------------------~~~-- 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR-DLEKDR-GVD---------------------LPG-- 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC-Chhhcc-CCC---------------------Ccc--
Confidence 589999999999999999886542 235788888664 211110 000 000
Q ss_pred EEEEecCCCCCCCCccCCCcEEEcCCCCC-CChhhHHHHHHcCCCEEEEeC
Q 020217 159 IKVVSNRDPLQLPWAELGIDIVIEGTGVF-VDGPGAGKHIQAGAKKVIITA 208 (329)
Q Consensus 159 I~V~~~~~P~~idW~~~GiDiVvesTG~f-~~~e~a~~Hl~aGakkVIISA 208 (329)
..++ .+++++ ..+..+|+|+|+||.. ...+.....|++|. -|+|+
T Consensus 58 ~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk--hVVta 103 (426)
T PRK06349 58 ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK--HVVTA 103 (426)
T ss_pred ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC--eEEEc
Confidence 0111 122222 1234789999999864 23456667788885 45664
No 61
>PRK11579 putative oxidoreductase; Provisional
Probab=95.87 E-value=0.036 Score=53.83 Aligned_cols=92 Identities=23% Similarity=0.418 Sum_probs=59.7
Q ss_pred eeeEEEEcCChhHHH-HHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 86 ~vkVaInGfGRIGR~-vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
++||||+|+|.||+. .++.+... +++++++|.|. +.+..+- .|.+ ++++
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~--~~~~l~av~d~-~~~~~~~---------~~~~----------------~~~~-- 53 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGT--PGLELAAVSSS-DATKVKA---------DWPT----------------VTVV-- 53 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhC--CCCEEEEEECC-CHHHHHh---------hCCC----------------Ccee--
Confidence 589999999999985 56766543 46899999886 3333220 1110 0111
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP 209 (329)
.+.+++ ..+.++|+|+-+|+...-.+.+...+++|. -|++--|
T Consensus 54 ~~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (346)
T PRK11579 54 SEPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKP 96 (346)
T ss_pred CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence 122222 112368999999999988899999999984 5666555
No 62
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.78 E-value=0.04 Score=53.22 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=56.2
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 86 ~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
++||+|+| .||+||.+++++.+. +++++++.=+..+. ...|.-.|++- -++-..+.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~~~~----------~~~g~d~ge~~-------g~~~~gv~v~-- 60 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDRPGS----------LSLGSDAGELA-------GLGLLGVPVT-- 60 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC--CCceEEEEEecCCc----------cccccchhhhc-------cccccCceee--
Confidence 47999999 599999999999875 46888776553111 01111011110 0011112221
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVII 206 (329)
.++ .-.....|++||=|-...+.+.+...++.|.+- ||
T Consensus 61 ~~~---~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~l-VI 98 (266)
T COG0289 61 DDL---LLVKADADVLIDFTTPEATLENLEFALEHGKPL-VI 98 (266)
T ss_pred cch---hhcccCCCEEEECCCchhhHHHHHHHHHcCCCe-EE
Confidence 121 122336789999888888888888888888544 44
No 63
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.75 E-value=0.16 Score=47.56 Aligned_cols=34 Identities=44% Similarity=0.634 Sum_probs=29.9
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
+.++|+|.|||.||+.+++.|.+. ...+|+|.|.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~---g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA---GAKVVAVSDS 63 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECC
Confidence 457999999999999999999875 4899999885
No 64
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.75 E-value=0.022 Score=52.85 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=83.5
Q ss_pred ccccccCcccccc---cc----ccccCCCcCHHHHHHhhcccccccCCCCccccccCeeeEEEEcCChhHHHHHHHHHhC
Q 020217 36 DVAEFAGLRANAG---AT----YATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 36 ~~~~~~g~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkVaInGfGRIGR~vlR~l~~r 108 (329)
+++++-|+.+... +. |++++-+-++. +|...+.+.. + . ....+|.|+|.|.+||.++..-+..
T Consensus 37 els~~~~vdsatIRrDfSYFG~lGkrG~GYnV~-~L~~ff~~~L-g-------~-~~~tnviiVG~GnlG~All~Y~f~~ 106 (211)
T COG2344 37 ELSEALGVDSATIRRDFSYFGELGKRGYGYNVK-YLRDFFDDLL-G-------Q-DKTTNVIIVGVGNLGRALLNYNFSK 106 (211)
T ss_pred HHHHHhCCCHHHHhhhhHHHHhcCCCCCCccHH-HHHHHHHHHh-C-------C-CcceeEEEEccChHHHHHhcCcchh
Confidence 5666666655431 22 24444444433 3333343333 1 1 2347999999999999887654432
Q ss_pred CCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCCCCCCCccCCCcEEEcCCCCCC
Q 020217 109 KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 188 (329)
Q Consensus 109 ~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~P~~idW~~~GiDiVvesTG~f~ 188 (329)
..+++++++=|. +++. -|++-+.+. |..-.+.+++ -.+.++|++|-|.+...
T Consensus 107 -~~~~~iv~~FDv-~~~~----------VG~~~~~v~---------------V~~~d~le~~-v~~~dv~iaiLtVPa~~ 158 (211)
T COG2344 107 -KNGMKIVAAFDV-DPDK----------VGTKIGDVP---------------VYDLDDLEKF-VKKNDVEIAILTVPAEH 158 (211)
T ss_pred -hcCceEEEEecC-CHHH----------hCcccCCee---------------eechHHHHHH-HHhcCccEEEEEccHHH
Confidence 246899888765 3322 144433333 2221222221 12338999999999988
Q ss_pred ChhhHHHHHHcCCCEEEEeCCCCCCCCC
Q 020217 189 DGPGAGKHIQAGAKKVIITAPAKGADIP 216 (329)
Q Consensus 189 ~~e~a~~Hl~aGakkVIISAPsk~~DiP 216 (329)
..+-+..-.++|+|-++==+|..- ++|
T Consensus 159 AQ~vad~Lv~aGVkGIlNFtPv~l-~~p 185 (211)
T COG2344 159 AQEVADRLVKAGVKGILNFTPVRL-QVP 185 (211)
T ss_pred HHHHHHHHHHcCCceEEeccceEe-cCC
Confidence 888888999999998655566522 455
No 65
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.69 E-value=0.02 Score=46.28 Aligned_cols=94 Identities=32% Similarity=0.414 Sum_probs=64.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhc-cccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLL-kyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
+||||+|+|.+|+..++.+.... +++++++|-|+ +.+...... +|.. . ++ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~-~~~~~~~~~~~~~~-------~-----------------~~--~ 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDP-DPERAEAFAEKYGI-------P-----------------VY--T 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECS-SHHHHHHHHHHTTS-------E-----------------EE--S
T ss_pred CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeC-CHHHHHHHHHHhcc-------c-----------------ch--h
Confidence 58999999999999999888763 56899999987 443332221 1111 1 10 1
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPs 210 (329)
+.+++ ..+.++|+|+-+|+...-.+.+...+++|. .|++--|-
T Consensus 53 ~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 53 DLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp SHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 11121 112378999999999988899999999998 67776663
No 66
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.45 E-value=0.01 Score=48.81 Aligned_cols=87 Identities=28% Similarity=0.385 Sum_probs=47.8
Q ss_pred cCChhHHHHHHHHHhCCCC-CceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCCCC-C
Q 020217 93 GFGRIGRNFLRCWHGRKDS-PLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQ-L 170 (329)
Q Consensus 93 GfGRIGR~vlR~l~~r~~~-~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~P~~-i 170 (329)
|||.||+.+++.|.++... ++++++|-+.. . ++..+. ...+ .+.... .+.++ +
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~--~----~~~~~~-~~~~--------~~~~~~----------~~~~~~~ 55 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS--M----LISKDW-AASF--------PDEAFT----------TDLEELI 55 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS--E----EEETTH-HHHH--------THSCEE----------SSHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC--c----hhhhhh-hhhc--------cccccc----------CCHHHHh
Confidence 8999999999999876321 58888887651 0 111000 0000 000000 11111 1
Q ss_pred CCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 020217 171 PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (329)
Q Consensus 171 dW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISA 208 (329)
.|. .+|+|||||+...-.+.....|+.|. -|||+
T Consensus 56 ~~~--~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 56 DDP--DIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp THT--T-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred cCc--CCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 222 68999999998777777788888888 55665
No 67
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.40 E-value=0.045 Score=51.80 Aligned_cols=75 Identities=23% Similarity=0.226 Sum_probs=53.8
Q ss_pred CCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhhhhhHHHhhhhh
Q 020217 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEE 255 (329)
Q Consensus 176 GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~LaPvlKvL~d~ 255 (329)
++|+|+|+|......+.+.+..++|.+-+-+|-..- -|-+|+-+|-+.--+. .-|.-..|-..+-.|++....+.
T Consensus 71 di~lvfdatsa~~h~~~a~~~ae~gi~~idltpaai---gp~vvp~~n~~eh~~a--~nvnmvtcggqatipiv~avsrv 145 (310)
T COG4569 71 DIDLVFDATSAGAHVKNAAALAEAGIRLIDLTPAAI---GPYVVPVVNLEEHVDA--LNVNMVTCGGQATIPIVAAVSRV 145 (310)
T ss_pred CcceEEeccccchhhcchHhHHhcCCceeecchhcc---CCeeccccchHHhcCC--CCcceEeecCcccchhhhhhhhh
Confidence 688999999999999999999999997655543222 3899999998754321 12334456677777777776653
No 68
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.96 E-value=0.26 Score=45.84 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=29.7
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
+..+|+|-|||.+|+.+++.|.++ +..+|+|.|.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~---G~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE---GGKVLAVSDP 55 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEEcC
Confidence 447999999999999999999876 3689999986
No 69
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.60 E-value=0.37 Score=46.22 Aligned_cols=105 Identities=21% Similarity=0.178 Sum_probs=60.3
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC---------CChhhhhhhccccccccccCceEEEecCCeEEEC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLLGTFKADVKIVDNETISVD 155 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~---------~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~in 155 (329)
+..+|+|-|||.+|+.+++.|.+. ...||+|.|. .|++.+..|++++..++.. +. +-...+.
T Consensus 37 ~g~~vaIqGfGnVG~~~a~~L~e~---GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~---v~---~~~~~~~ 107 (254)
T cd05313 37 KGKRVAISGSGNVAQYAAEKLLEL---GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGR---VS---EYAKKYG 107 (254)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCc---HH---HHhhcCC
Confidence 446999999999999999999875 3799999883 2445554455554322210 00 0000001
Q ss_pred CeEEEEEecCCCCCCCCccCCCcEEEcC-CCCCCChhhHHHHHHcCCCEEEE
Q 020217 156 GKLIKVVSNRDPLQLPWAELGIDIVIEG-TGVFVDGPGAGKHIQAGAKKVII 206 (329)
Q Consensus 156 Gk~I~V~~~~~P~~idW~~~GiDiVves-TG~f~~~e~a~~Hl~aGakkVII 206 (329)
+ .+.+ +++++ | +..+||.+=| ++.-++.+.+.+-.+.+|| +|+
T Consensus 108 ~--a~~~---~~~~~-~-~~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~ 151 (254)
T cd05313 108 T--AKYF---EGKKP-W-EVPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVA 151 (254)
T ss_pred C--CEEe---CCcch-h-cCCCcEEEeccccccCCHHHHHHHHHcCCE-EEE
Confidence 1 1111 22232 4 2468876655 5666777777765555664 445
No 70
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=94.50 E-value=0.14 Score=51.85 Aligned_cols=110 Identities=18% Similarity=0.233 Sum_probs=64.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhc-cccccccccCceEEEecCC---eEE--ECCeEE
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNE---TIS--VDGKLI 159 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLL-kyDS~hG~F~g~V~v~~~~---~L~--inGk~I 159 (329)
.+|+|.| +|-||+.-++++.... .+++|+++.-..+.+.+..+. +|... -|-+.++. .|. ..+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p-~~f~VvaLaa~~n~~~l~~q~~~f~p~------~v~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNP-DRFRVVALSAGKNVELLAEQAREFRPK------YVVVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHHHHHhCCC------EEEEcCHHHHHHHHHhhccCCc
Confidence 5899999 9999999999886543 368999997322454444433 22221 11111100 000 112123
Q ss_pred EEEecCC-CCC-CCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 020217 160 KVVSNRD-PLQ-LPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (329)
Q Consensus 160 ~V~~~~~-P~~-idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVII 206 (329)
+++...+ ..+ +.. ..+|+||.+++.+...+..-..+++| |+|.+
T Consensus 75 ~v~~G~~~~~~l~~~--~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL 120 (385)
T PRK05447 75 EVLAGEEGLCELAAL--PEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL 120 (385)
T ss_pred eEEEChhHHHHHhcC--CCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence 3444322 111 111 26899999999998888777888888 45544
No 71
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.36 E-value=0.23 Score=51.16 Aligned_cols=102 Identities=20% Similarity=0.270 Sum_probs=60.0
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC-------CChhhhhhhccccccc-cccCceEEEecCCeEEECC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-------GGVKNASHLLKYDSLL-GTFKADVKIVDNETISVDG 156 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~-------~d~~~~ayLLkyDS~h-G~F~g~V~v~~~~~L~inG 156 (329)
+..+|+|-|||.+|+.+++.|.+. ...||+|.|. .+++ ...|++|--.+ |...+- .+. . |
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~---GakVVavsDs~G~iyn~~GLD-~~~L~~~k~~~~~~l~~~----~~~---~-~ 298 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQL---GAKVVTCSDSSGYVYDEEGID-LEKLKEIKEVRRGRISEY----AEE---F-G 298 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEcCCceEECCCCCC-HHHHHHHHHhcCCchhhh----hhh---c-C
Confidence 447999999999999999999875 4799999883 1122 12234332211 211100 000 0 1
Q ss_pred eEEEEEecCCCCCCCCccCCCcEEEcCC-CCCCChhhHHHHHHcCCCEEEE
Q 020217 157 KLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (329)
Q Consensus 157 k~I~V~~~~~P~~idW~~~GiDiVvesT-G~f~~~e~a~~Hl~aGakkVII 206 (329)
.+.+ +++++ | +..+||.|.|+ +.-++.+.+..+.+.+|| +|+
T Consensus 299 --~~~i---~~~~i-~-~~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 299 --AEYL---EGGSP-W-SVPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred --Ceec---CCccc-c-ccCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 0111 22222 4 34789999986 556677778888777774 444
No 72
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.30 E-value=0.065 Score=47.55 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=27.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
..+|||+|||+||+.+++.+... +++|++.+..
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~~ 68 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAF---GMRVIGYDRS 68 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHT---T-EEEEEESS
T ss_pred CCEEEEEEEcCCcCeEeeeeecC---CceeEEeccc
Confidence 35899999999999999999865 4798888765
No 73
>PLN02477 glutamate dehydrogenase
Probab=93.72 E-value=0.62 Score=47.56 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=29.5
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
+..+|+|-|||.+|+.+++.|.+. ...||+|.|.
T Consensus 205 ~g~~VaIqGfGnVG~~~A~~L~e~---GakVVaVsD~ 238 (410)
T PLN02477 205 AGQTFVIQGFGNVGSWAAQLIHEK---GGKIVAVSDI 238 (410)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEECC
Confidence 346899999999999999999875 3799999886
No 74
>PLN02700 homoserine dehydrogenase family protein
Probab=93.53 E-value=0.18 Score=50.91 Aligned_cols=37 Identities=35% Similarity=0.480 Sum_probs=29.1
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCC------CCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~------~~~l~vVaInd~ 121 (329)
+.++|+|.|||-||+.+++.+..+. +-+++|++|.+.
T Consensus 2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 3589999999999999999876542 224788888774
No 75
>PRK10206 putative oxidoreductase; Provisional
Probab=93.44 E-value=0.16 Score=49.65 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=57.9
Q ss_pred eeeEEEEcCChhHH-HHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 86 KLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 86 ~vkVaInGfGRIGR-~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
++||||+|+|+|++ ..++.+... .+.+++++|-|. +.+.....-+|. + +.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~-~~~~~l~av~d~-~~~~~~~~~~~~---------------------~--~~~~-- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNR-KDSWHVAHIFRR-HAKPEEQAPIYS---------------------H--IHFT-- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcC-CCCEEEEEEEcC-ChhHHHHHHhcC---------------------C--Cccc--
Confidence 37999999999885 345655433 245899999886 222221110111 0 0111
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP 209 (329)
.+.+++ ..+.++|+|+-+|....-.+.+...+++| |-|++--|
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKP 96 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecC
Confidence 111111 11237899999999998889999999998 45677555
No 76
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.37 E-value=0.16 Score=46.43 Aligned_cols=96 Identities=23% Similarity=0.259 Sum_probs=58.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
..+|+|+|.|.+|+.+++.+... ..+++++++-|. +++.. |+ . ++|.++ ....
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~-~~g~~ivgv~D~-d~~~~----------~~-----------~--i~g~~v--~~~~ 136 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFE-KRGFKIVAAFDV-DPEKI----------GT-----------K--IGGIPV--YHID 136 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcc-cCCcEEEEEEEC-Chhhc----------CC-----------E--eCCeEE--cCHH
Confidence 36899999999999999864322 245888888654 22111 10 0 123222 1112
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP 209 (329)
+..++ ..+.++|+|+.+++.....+-...-+++|.+.|+.-.|
T Consensus 137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 22222 13457999999999876666566677789877655455
No 77
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=93.12 E-value=0.74 Score=47.69 Aligned_cols=111 Identities=15% Similarity=0.183 Sum_probs=65.0
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhc-cccccccccCceEEEecC-------CeEEEC
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDN-------ETISVD 155 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLL-kyDS~hG~F~g~V~v~~~-------~~L~in 155 (329)
.+.||+|.| +|-||...++++.+.. .+++++++.-....+.++... +|... -|.+.+. ..| +
T Consensus 56 ~~KkI~ILGSTGSIGtqtLdVI~~~p-d~f~vvaLaag~Ni~lL~~q~~~f~p~------~v~v~d~~~~~~l~~~l--~ 126 (454)
T PLN02696 56 GPKPISLLGSTGSIGTQTLDIVAENP-DKFKVVALAAGSNVTLLADQVRKFKPK------LVAVRNESLVDELKEAL--A 126 (454)
T ss_pred CccEEEEecCCcHhhHHHHHHHHhCc-cccEEEEEECCCCHHHHHHHHHHhCCC------EEEEcCHHHHHHHHHhh--c
Confidence 346999999 7999999999987653 358998887655665555433 22221 1111000 001 1
Q ss_pred Ce--EEEEEecC-CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 020217 156 GK--LIKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (329)
Q Consensus 156 Gk--~I~V~~~~-~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVII 206 (329)
|. .++++... +..++ -....+|+||.+.+.+....-.-..+++| |+|.+
T Consensus 127 ~~~~~~~vl~G~egl~~l-a~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VAL 178 (454)
T PLN02696 127 DLDDKPEIIPGEEGIVEV-ARHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 178 (454)
T ss_pred CCCCCcEEEECHHHHHHH-HcCCCCCEEEEeCccccchHHHHHHHHCC-CcEEE
Confidence 10 13343311 11111 01126899999999987777777788888 55554
No 78
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.03 E-value=0.2 Score=46.48 Aligned_cols=98 Identities=22% Similarity=0.262 Sum_probs=56.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhcc--ccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK--YDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLk--yDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
+++.|+|.|++|+.++|.|.+.. -+++.|.+ |.+....-+. +|. ..+..++....++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~--d~~~~~~~~~~~~~~--------------~~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDR--DEERVEEFLADELDT--------------HVVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEc--CHHHHHHHhhhhcce--------------EEEEecCCCHHHHHh
Confidence 47999999999999999998763 47777754 3333222111 111 112222322222222
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhH-HHHHH-cCCCEEEEeCCC
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGA-GKHIQ-AGAKKVIITAPA 210 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a-~~Hl~-aGakkVIISAPs 210 (329)
-.. ..+|+|+-+||.....--+ ..+++ -|+++||..+..
T Consensus 62 agi-------~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 62 AGI-------DDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred cCC-------CcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 111 1557999999985443333 33444 599998887754
No 79
>PLN02775 Probable dihydrodipicolinate reductase
Probab=93.00 E-value=0.32 Score=47.51 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=28.8
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
+.+||+||| .|++|+.+++++.. +++++|+.-|+
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~---~~~~Lv~~~~~ 44 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVS---AGLQLVPVSFT 44 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhc---CCCEEEEEecc
Confidence 557999999 89999999999876 35899887664
No 80
>PRK14030 glutamate dehydrogenase; Provisional
Probab=92.76 E-value=1.2 Score=46.00 Aligned_cols=125 Identities=19% Similarity=0.178 Sum_probs=71.0
Q ss_pred CCcCHHHHHHhhcccccccCCCCccccccCeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC---------CChhh
Q 020217 56 RDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKN 126 (329)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~---------~d~~~ 126 (329)
.+..+.-+++.-+.... ..-+..+|+|-|||.+|..+++.|.+. ...||+|.|. .|++.
T Consensus 207 Tg~Gv~~~~~~~~~~~g---------~~l~g~~vaIQGfGnVG~~aA~~L~e~---GakvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 207 TGFGALYFVHQMLETKG---------IDIKGKTVAISGFGNVAWGAATKATEL---GAKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred cHHHHHHHHHHHHHHcC---------CCcCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEcCCceEECCCCCCHHH
Confidence 44456556655554321 112346999999999999999999875 3699997664 24555
Q ss_pred hhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCCCCCCCccCCCcEEEcC-CCCCCChhhHHHHHHcCCCEEE
Q 020217 127 ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEG-TGVFVDGPGAGKHIQAGAKKVI 205 (329)
Q Consensus 127 ~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~P~~idW~~~GiDiVves-TG~f~~~e~a~~Hl~aGakkVI 205 (329)
+.+|++|-..+|..-... . . .+.|- +.+ +++++ |. ..+||.+=| ++.-++.+.+..-.+.+||- |
T Consensus 275 l~~l~~~k~~~~~~~~~~-~---~--~~~ga--~~i---~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~-V 340 (445)
T PRK14030 275 IDYMLELRASGNDIVAPY-A---E--KFPGS--TFF---AGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVLC-V 340 (445)
T ss_pred HHHHHHHHHhcCccHHHH-H---h--cCCCC--EEc---CCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCeE-E
Confidence 666776544333210000 0 0 01111 111 12222 43 478876654 67777888877766677743 4
Q ss_pred E
Q 020217 206 I 206 (329)
Q Consensus 206 I 206 (329)
+
T Consensus 341 ~ 341 (445)
T PRK14030 341 A 341 (445)
T ss_pred E
Confidence 4
No 81
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=92.72 E-value=0.09 Score=57.71 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=29.8
Q ss_pred cCeeeEEEEcCChhHHHHHHHHHhCC-------CCCceEEEEeCC
Q 020217 84 VAKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (329)
Q Consensus 84 ~~~vkVaInGfGRIGR~vlR~l~~r~-------~~~l~vVaInd~ 121 (329)
.+.++|+|.|||.||+.+++.|.++. +-+++|++|-+.
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 35689999999999999999987643 235788888653
No 82
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.62 E-value=0.14 Score=56.10 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=28.8
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCC------CCCceEEEEeC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVND 120 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~------~~~l~vVaInd 120 (329)
+.++|+|.|||.||+.+++.|.++. +-+++|++|-+
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~ 505 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIAN 505 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEc
Confidence 5789999999999999999987542 22577888765
No 83
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=92.44 E-value=0.17 Score=51.18 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=29.4
Q ss_pred cCeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 84 ~~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
..++|||++|.|-.|+-++--...- +.+++|+|.|.
T Consensus 15 G~PiRVGlIGAG~mG~~ivtQi~~m--~Gm~vvaisd~ 50 (438)
T COG4091 15 GKPIRVGLIGAGEMGTGIVTQIASM--PGMEVVAISDR 50 (438)
T ss_pred CCceEEEEecccccchHHHHHHhhc--CCceEEEEecc
Confidence 3679999999999999877655433 56999999997
No 84
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=92.35 E-value=0.17 Score=49.24 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=26.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
..+|||+|||+|||.+++.+... +++|++.+.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~f---gm~V~~~d~ 176 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAF---GAKVVYYST 176 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhc---CCEEEEECC
Confidence 36899999999999999998654 478887754
No 85
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.99 E-value=0.92 Score=47.02 Aligned_cols=123 Identities=19% Similarity=0.204 Sum_probs=71.3
Q ss_pred CCCcCHHHHHHhhcccccccCCCCccccccCeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCC---------Chh
Q 020217 55 ARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG---------GVK 125 (329)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~---------d~~ 125 (329)
.++-.+.-|+..-+.... ..-+..+|+|-|||-+|..+++.|.+. ...||+|.|.. |.+
T Consensus 215 ATG~Gv~~~~~~~l~~~~---------~~l~Gk~VaVqG~GnVg~~aa~~L~e~---GakVVavSD~~G~iy~~~Gld~~ 282 (454)
T PTZ00079 215 ATGYGLVYFVLEVLKKLN---------DSLEGKTVVVSGSGNVAQYAVEKLLQL---GAKVLTMSDSDGYIHEPNGFTKE 282 (454)
T ss_pred ccHHHHHHHHHHHHHHcC---------CCcCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEcCCCcEECCCCCCHH
Confidence 344456666666554421 112346999999999999999999875 36999999862 344
Q ss_pred hhhhhccccccc-cccCceEEEecCCeEEECCeEEEEEecCCCCCCCCccCCCcEEEcC-CCCCCChhhHHHHHHcCCCE
Q 020217 126 NASHLLKYDSLL-GTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEG-TGVFVDGPGAGKHIQAGAKK 203 (329)
Q Consensus 126 ~~ayLLkyDS~h-G~F~g~V~v~~~~~L~inGk~I~V~~~~~P~~idW~~~GiDiVves-TG~f~~~e~a~~Hl~aGakk 203 (329)
.+.+|+++-..+ |....-. + . .-| .+.+. +++ .|. ..+||.+=| ++.-++.+.+..-++.|||-
T Consensus 283 ~l~~l~~~k~~~~g~i~~~~----~--~-~~~--a~~~~---~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~ 348 (454)
T PTZ00079 283 KLAYLMDLKNVKRGRLKEYA----K--H-SST--AKYVP---GKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKL 348 (454)
T ss_pred HHHHHHHHHhhcCCcHHhhh----h--c-cCC--cEEeC---CcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCeE
Confidence 554444432211 2111000 0 0 001 11111 222 364 578977765 67777888888777888853
No 86
>PRK06487 glycerate dehydrogenase; Provisional
Probab=91.78 E-value=0.21 Score=48.67 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=25.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|||+|+|+||+.+++.+... +++|++.+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f---gm~V~~~~~ 179 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF---GMRVLIGQL 179 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC---CCEEEEECC
Confidence 5899999999999999998654 478887764
No 87
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=91.52 E-value=0.37 Score=37.69 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=30.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhc
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLL 131 (329)
||+|.|+|.+|..+++.|.+....+-++..+.+. +++...++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-SPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-cHHHHHHHH
Confidence 7999999999999999998764233576656443 555555543
No 88
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.30 E-value=0.45 Score=45.32 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=59.4
Q ss_pred cCeeeEEEEcCChhHHHHHHHHHhCC------C--CCceEEEEeCC-CChhhhh-hhccccccccccCceEEEecCCeEE
Q 020217 84 VAKLKVAINGFGRIGRNFLRCWHGRK------D--SPLDVVVVNDS-GGVKNAS-HLLKYDSLLGTFKADVKIVDNETIS 153 (329)
Q Consensus 84 ~~~vkVaInGfGRIGR~vlR~l~~r~------~--~~l~vVaInd~-~d~~~~a-yLLkyDS~hG~F~g~V~v~~~~~L~ 153 (329)
.++.||.|+|.|-+|-.+++.|.... + ..++++.|..- .+...+- .+| +++.-|+++.++-.+ .--.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf-~~~dVG~~Ka~v~~~--ri~~ 85 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAF-YPADVGQNKAIVLVN--RLNQ 85 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccC-ChhHCCcHHHHHHHH--HHHh
Confidence 35679999999999999999886431 1 12455555321 2221111 233 234457766554421 1111
Q ss_pred ECCeEEEEEecC-CCCCCCCccCCCcEEEcCCCCCCChhhHHHHH
Q 020217 154 VDGKLIKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI 197 (329)
Q Consensus 154 inGk~I~V~~~~-~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl 197 (329)
+++..++.+..+ +++++ + .+.|+||+|+..+..+..+...+
T Consensus 86 ~~~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 86 AMGTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred ccCceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHHHH
Confidence 234344443322 22222 2 26899999999998886664444
No 89
>PRK06932 glycerate dehydrogenase; Provisional
Probab=91.05 E-value=0.28 Score=47.87 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=25.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
..+|||+|||+|||.+++.+... +++|++++
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f---g~~V~~~~ 177 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL---GMKVLYAE 177 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC---CCEEEEEC
Confidence 35899999999999999988643 47877764
No 90
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=90.71 E-value=0.89 Score=43.11 Aligned_cols=96 Identities=25% Similarity=0.272 Sum_probs=59.7
Q ss_pred CeeeEEEEcCChhHH-HHHHHHHhCCCCCceEEEEeCCCChhhhhhhc-cccccccccCceEEEecCCeEEECCeEEEEE
Q 020217 85 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (329)
Q Consensus 85 ~~vkVaInGfGRIGR-~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLL-kyDS~hG~F~g~V~v~~~~~L~inGk~I~V~ 162 (329)
+++||||+|.|.|+. ..+..+..... .+++|+|-|+ +.+.+..+. +|.-. +.+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~-~~~~vav~d~-~~~~a~~~a~~~~~~-----------------------~~~ 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGG-GLELVAVVDR-DPERAEAFAEEFGIA-----------------------KAY 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCC-ceEEEEEecC-CHHHHHHHHHHcCCC-----------------------ccc
Confidence 568999999997775 57777765421 1799999886 444432222 12110 000
Q ss_pred ecCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 020217 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (329)
Q Consensus 163 ~~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP 209 (329)
.+.+++ -.+..+|+|+-+|....-.+.+...|++|. -|++--|
T Consensus 57 --~~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 57 --TDLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred --CCHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 111111 011248999999999999999999999987 4566444
No 91
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.45 E-value=1.4 Score=40.20 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
++|+|.|||++|+.+++.|.+. ..+|++ .|.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~---G~~Vvv-~D~ 59 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE---GAKLIV-ADI 59 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEE-EcC
Confidence 5899999999999999999875 357774 454
No 92
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.26 E-value=0.37 Score=47.52 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=26.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
-.+|||+|||+||+.+++.|... +++|++.+-
T Consensus 142 gkTvGIiG~G~IG~~va~~l~af---gm~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAF---GMKVIGYDP 173 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCeEEEECC
Confidence 35899999999999999988654 478887754
No 93
>PLN02928 oxidoreductase family protein
Probab=90.09 E-value=0.38 Score=47.58 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=26.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|||+|||+||+.+++.|... +++|++.+.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af---G~~V~~~dr 190 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF---GVKLLATRR 190 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC---CCEEEEECC
Confidence 5899999999999999998754 478888764
No 94
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.62 E-value=0.44 Score=48.22 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=25.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
..+|||+|||+||+.+++.+... +++|++.+
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~f---Gm~V~~~d 181 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESL---GMRVYFYD 181 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEC
Confidence 35899999999999999998754 47887775
No 95
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=89.49 E-value=0.45 Score=46.67 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=24.5
Q ss_pred eeeEEEEcCChhHHHHHHHHH-hCCCCCceEEEEe
Q 020217 86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~-~r~~~~l~vVaIn 119 (329)
..+|||+|||+|||.+++.+. .. +++|++.+
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~f---gm~V~~~~ 176 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGF---NMPILYNA 176 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcC---CCEEEEEC
Confidence 368999999999999999885 43 47876543
No 96
>PRK06436 glycerate dehydrogenase; Provisional
Probab=89.47 E-value=0.48 Score=46.22 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=26.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
..+|||.|+|+||+.+++.|... +++|++.+.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af---G~~V~~~~r 153 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF---GMNIYAYTR 153 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence 36899999999999999987643 478888865
No 97
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.29 E-value=0.49 Score=46.48 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=26.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
..+|+|+|+|+||+.+++.|... +++|++.+.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~---G~~V~~~d~ 181 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF---GMRILYYSR 181 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence 36899999999999999998754 368877753
No 98
>PRK07574 formate dehydrogenase; Provisional
Probab=89.26 E-value=0.48 Score=47.85 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=25.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
++|+|+|+|+||+.++|.|... +++|++.+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f---G~~V~~~dr 223 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF---DVKLHYTDR 223 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 5899999999999999998754 478777754
No 99
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=88.94 E-value=0.95 Score=44.03 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=24.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
+||.||| .|++|+.+++++.. .+|++|+.
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~---~~~~Lv~~ 30 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA---AGLEIVPT 30 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc---CCCEEEee
Confidence 4899999 89999999999765 36899875
No 100
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=88.59 E-value=1.8 Score=40.56 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=25.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
|||||.| .|++|..++.-+..|. -++++|-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEEe
Confidence 5899999 9999999998888774 57777754
No 101
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=88.20 E-value=0.68 Score=45.23 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=25.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|||+|+|.||+.+++.|... ++++.+++.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af---G~~V~~~~~ 167 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW---GFPLRCWSR 167 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEeC
Confidence 5899999999999999998754 378777753
No 102
>PLN02306 hydroxypyruvate reductase
Probab=87.90 E-value=0.67 Score=46.78 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=24.8
Q ss_pred eeeEEEEcCChhHHHHHHHHH-hCCCCCceEEEEe
Q 020217 86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~-~r~~~~l~vVaIn 119 (329)
..+|||+|||+||+.+++.+. .. +++|++.+
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~f---Gm~V~~~d 196 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGF---KMNLIYYD 196 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC---CCEEEEEC
Confidence 358999999999999999874 33 47887764
No 103
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=87.84 E-value=0.67 Score=45.76 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=25.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
-.+|||.|+||||+.++|.+... +++|+.-+-
T Consensus 146 gktvGIiG~GrIG~avA~r~~~F---gm~v~y~~~ 177 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGF---GMKVLYYDR 177 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC---CCEEEEECC
Confidence 36899999999999999998643 478766653
No 104
>PTZ00117 malate dehydrogenase; Provisional
Probab=87.61 E-value=3.2 Score=40.49 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~ 109 (329)
..||+|.|.|.+|..++..+..+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~ 28 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKN 28 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC
Confidence 369999999999999988776553
No 105
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=87.54 E-value=2.8 Score=40.23 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=25.4
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
|++||+|+|.|.||..++..|.... .+|..++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G---~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG---ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC---CcEEEEec
Confidence 4478999999999999999987652 45555543
No 106
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=87.43 E-value=0.45 Score=46.75 Aligned_cols=95 Identities=33% Similarity=0.461 Sum_probs=51.3
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCc-eEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 020217 89 VAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (329)
Q Consensus 89 VaInGfGRIGR~vlR~l~~r~~~~l-~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~P 167 (329)
|.|.|.|.+|+.+++.|.++. ++ ++++. |. +.+.+..+++. ..+ ..++ .......++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~--~~~~v~va-~r-~~~~~~~~~~~--~~~---~~~~-------------~~~~d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG--PFEEVTVA-DR-NPEKAERLAEK--LLG---DRVE-------------AVQVDVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT--CE-EEEEE-ES-SHHHHHHHHT----TT---TTEE-------------EEE--TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCC--CCCcEEEE-EC-CHHHHHHHHhh--ccc---ccee-------------EEEEecCCH
Confidence 689999999999999998763 34 44433 43 44444444321 000 0111 011112233
Q ss_pred CCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 020217 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (329)
Q Consensus 168 ~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIIS 207 (329)
+.+.=--.+.|+||.|.|.+....-+...+++|+ -.++
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD 96 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVD 96 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEE
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceec
Confidence 2221111267999999999977777788888898 4455
No 107
>CHL00194 ycf39 Ycf39; Provisional
Probab=87.39 E-value=1.7 Score=41.34 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=25.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
|||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEc
Confidence 3799999 9999999999998763 57766643
No 108
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.29 E-value=1.5 Score=44.98 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|+|.|+|.||+.+++.|... ..+|++++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~---Ga~ViV~d 242 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL---GARVIVTE 242 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEEc
Confidence 4899999999999999988765 35766553
No 109
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.11 E-value=0.81 Score=46.20 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=25.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
..+|||+|+|.||+.+++.|... ++++++.+
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~---G~~V~~~d 146 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEAL---GIKTLLCD 146 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEEEC
Confidence 35899999999999999998754 47887764
No 110
>PLN03139 formate dehydrogenase; Provisional
Probab=87.00 E-value=0.76 Score=46.50 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=25.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
..+|||+|+|+||+.+++.|... ++++++.+
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af---G~~V~~~d 229 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF---NCNLLYHD 229 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC---CCEEEEEC
Confidence 35899999999999999998753 47877664
No 111
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=86.88 E-value=0.26 Score=44.36 Aligned_cols=96 Identities=22% Similarity=0.256 Sum_probs=51.8
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 020217 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (329)
Q Consensus 89 VaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~P 167 (329)
|+|.| +|.+|+.+++.|... ..+|.++-...+ +..+.-|+. .| -.+ + .. ...++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~---~~~V~~l~R~~~-~~~~~~l~~---~g-----------~~v-v-----~~-d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA---GFSVRALVRDPS-SDRAQQLQA---LG-----------AEV-V-----EA-DYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TGCEEEEESSSH-HHHHHHHHH---TT-----------TEE-E-----ES--TT-H
T ss_pred CEEECCccHHHHHHHHHHHhC---CCCcEEEEeccc-hhhhhhhhc---cc-----------ceE-e-----ec-ccCCH
Confidence 68999 899999999999984 357666544311 111111211 11 011 0 00 01233
Q ss_pred CCCCCccCCCcEEEcCCCCCCChh------hHHHHHHcCCCEEEEeCC
Q 020217 168 LQLPWAELGIDIVIEGTGVFVDGP------GAGKHIQAGAKKVIITAP 209 (329)
Q Consensus 168 ~~idW~~~GiDiVvesTG~f~~~e------~a~~Hl~aGakkVIISAP 209 (329)
+.+.=.=.|+|.|+.+++.+...+ -.....++|+|++|.|..
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 332211138999999999774322 223445679999988643
No 112
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=86.09 E-value=1.1 Score=44.21 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=24.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
++|||+|+|+||+.+++.|... .++|++.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~---G~~V~~~d 176 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF---GATITAYD 176 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEEe
Confidence 5899999999999999998754 36777664
No 113
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=86.05 E-value=1.3 Score=38.64 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=23.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+|||++|+|.+|+.+++.|... ..+|.+.|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~---g~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA---GYEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT---TTEEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhc---CCeEEeec
Confidence 6899999999999999999865 36776665
No 114
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=85.95 E-value=7.8 Score=37.20 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=70.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~-~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
-+|.|.|.|.||...+.++... ..+++++... .+.+.+. +++ + .| .+. + +-+.-.+ .+
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~---G~~vi~~~~~~~~~~~~~-~~~-~--~G---a~~-v--------~~~~~~~-~~- 232 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLR---GFEVYVLNRRDPPDPKAD-IVE-E--LG---ATY-V--------NSSKTPV-AE- 232 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHH-HHH-H--cC---CEE-e--------cCCccch-hh-
Confidence 4799999999999988877654 2467776532 1233333 221 0 11 111 1 1000000 00
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhhh
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~L 245 (329)
.. .+ .++|+|||++|.-...+.+-..++.|-+-|++..+..+...++-...++...+..+ ..|+..-.++..-+
T Consensus 233 --~~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~-~~i~g~~~~~~~~~ 306 (355)
T cd08230 233 --VK-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGN-KALVGSVNANKRHF 306 (355)
T ss_pred --hh-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcC-cEEEEecCCchhhH
Confidence 00 11 37899999999654445555667665533334333321111110011122223233 45666655555556
Q ss_pred hhHHHhhhhh
Q 020217 246 APFVKVMDEE 255 (329)
Q Consensus 246 aPvlKvL~d~ 255 (329)
..+++.|.+.
T Consensus 307 ~~~~~~l~~~ 316 (355)
T cd08230 307 EQAVEDLAQW 316 (355)
T ss_pred HHHHHHHHhc
Confidence 6677777653
No 115
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=85.77 E-value=3.7 Score=40.97 Aligned_cols=47 Identities=30% Similarity=0.377 Sum_probs=36.4
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEE-EEeCCCChhhhhhhcccc
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVV-VVNDSGGVKNASHLLKYD 134 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vV-aInd~~d~~~~ayLLkyD 134 (329)
+..+|-|-| .|-||.-+++.|++|. ..|. .|+++.+.+...||.+.+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG---Y~V~gtVR~~~~~k~~~~L~~l~ 53 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG---YTVRGTVRDPEDEKKTEHLRKLE 53 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC---CEEEEEEcCcchhhhHHHHHhcc
Confidence 346899999 9999999999999874 2333 477777877777887665
No 116
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=85.70 E-value=2.6 Score=38.98 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=22.3
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+|.|.| +|.||+.+++.|.++. .+|.++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~~ 30 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVAS 30 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEEe
Confidence 478999 8999999999998753 4554443
No 117
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.54 E-value=1.8 Score=42.48 Aligned_cols=101 Identities=21% Similarity=0.157 Sum_probs=50.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECC-eEEEEEecCC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KLIKVVSNRD 166 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inG-k~I~V~~~~~ 166 (329)
+|+|.|.|.||-+.+.++-.. +--+|+++ |. +.+.++..-++.. ....+|. +.... ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~--Ga~~Viv~-d~-~~~Rl~~A~~~~g--------------~~~~~~~~~~~~~---~~ 229 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL--GASVVIVV-DR-SPERLELAKEAGG--------------ADVVVNPSEDDAG---AE 229 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCceEEEe-CC-CHHHHHHHHHhCC--------------CeEeecCccccHH---HH
Confidence 799999999998765554332 22466666 43 3444432222111 1111111 11000 00
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPs 210 (329)
..++.. ..|+|+||||+|.....+.+-..++.|-.-+++.-++
T Consensus 230 ~~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 230 ILELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred HHHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccC
Confidence 001111 1389999999995554455555555554344554444
No 118
>PRK14031 glutamate dehydrogenase; Provisional
Probab=85.37 E-value=7 Score=40.49 Aligned_cols=125 Identities=16% Similarity=0.201 Sum_probs=67.1
Q ss_pred CCcCHHHHHHhhcccccccCCCCccccccCeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC---------CChhh
Q 020217 56 RDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKN 126 (329)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~---------~d~~~ 126 (329)
.+..+.-+++.-+.... ..-+..+|+|-|||.+|...++.|.+. .-.||+|.|. .|++.
T Consensus 207 Tg~Gv~~~~~~~~~~~g---------~~l~g~rVaVQGfGNVG~~aA~~L~e~---GAkVVaVSD~~G~iy~~~Gld~~~ 274 (444)
T PRK14031 207 TGYGNIYFLMEMLKTKG---------TDLKGKVCLVSGSGNVAQYTAEKVLEL---GGKVVTMSDSDGYIYDPDGIDREK 274 (444)
T ss_pred cHHHHHHHHHHHHHhcC---------CCcCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCeEECCCCCCHHH
Confidence 34445556655554321 112346999999999999999999875 3699999982 24444
Q ss_pred hhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCCCCCCCccCCCcEEEcC-CCCCCChhhHHHHHHcCCCEEE
Q 020217 127 ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEG-TGVFVDGPGAGKHIQAGAKKVI 205 (329)
Q Consensus 127 ~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~P~~idW~~~GiDiVves-TG~f~~~e~a~~Hl~aGakkVI 205 (329)
+.|+.++... .++.+.-..+. . | .+++ ++++ .|. ..+|+.+=| ++.-++.+.+.+-...|+ ++|
T Consensus 275 l~~~~~~k~~---~~~~v~~~~~~---~-g--a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~-~~V 339 (444)
T PRK14031 275 LDYIMELKNL---YRGRIREYAEK---Y-G--CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGV-IAV 339 (444)
T ss_pred HHHHHHHHhh---cCCchhhhHhh---c-C--CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCC-eEE
Confidence 4443332221 01111100000 0 1 1221 1222 253 478877765 455577777776555577 234
Q ss_pred Ee
Q 020217 206 IT 207 (329)
Q Consensus 206 IS 207 (329)
+.
T Consensus 340 ~E 341 (444)
T PRK14031 340 SE 341 (444)
T ss_pred EC
Confidence 43
No 119
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=84.19 E-value=1.1 Score=35.95 Aligned_cols=92 Identities=25% Similarity=0.313 Sum_probs=53.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe-c
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS-N 164 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~-~ 164 (329)
+.+|+|+|.|+.|+.++...+.. ..+.++++=|. +++ +. ++ .++| +.|+. -
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~--~g~~i~~~~dv-~~~-------------~~--------G~--~i~g--ipV~~~~ 54 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSM--RGFGIVAVFDV-DPE-------------KI--------GK--EIGG--IPVYGSM 54 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHH--HCECEEEEEEE-CTT-------------TT--------TS--EETT--EEEESSH
T ss_pred CCeEEEECCCCcHHHHHHhHHHH--cCCCCEEEEEc-CCC-------------cc--------Cc--EECC--EEeeccH
Confidence 46899999999999887444432 23566555442 111 11 11 1233 34431 1
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP 209 (329)
++..+ +- ++|+.|-+.+.....+.+...+++|.|-++.=+|
T Consensus 55 ~~l~~--~~--~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 55 DELEE--FI--EIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHH--HC--TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred HHhhh--hh--CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11111 11 3899999988877777888888999999876554
No 120
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=84.04 E-value=1.9 Score=48.94 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=58.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCce------------EEEEeCCCChhhhhhhccccccccccCceEEEecCCeEE
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLD------------VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETIS 153 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~------------vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~ 153 (329)
+.||+|.|.|+||+..++.|.+.. +.+ +|+|.|+ +++....+.+ .+.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~--~~~~~~~~~~~~~~~lV~VaD~-~~~~a~~la~------~~~~----------- 628 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVK--TISYYGDDSEEPTDVHVIVASL-YLKDAKETVE------GIEN----------- 628 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCc--CccccccccccccccEEEEECC-CHHHHHHHHH------hcCC-----------
Confidence 469999999999999999997643 233 6778886 3333332221 0100
Q ss_pred ECCeEEEEEecCCCCCCC-CccCCCcEEEcCCCCCCChhhHHHHHHcCCC
Q 020217 154 VDGKLIKVVSNRDPLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (329)
Q Consensus 154 inGk~I~V~~~~~P~~id-W~~~GiDiVvesTG~f~~~e~a~~Hl~aGak 202 (329)
-+.+.+= ..|++++. +- .++|+||-+++.....+-+...+++|..
T Consensus 629 --~~~v~lD-v~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGkH 674 (1042)
T PLN02819 629 --AEAVQLD-VSDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKKH 674 (1042)
T ss_pred --CceEEee-cCCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCCC
Confidence 0111120 12333221 10 2689999999999988888899999873
No 121
>PLN00016 RNA-binding protein; Provisional
Probab=83.81 E-value=3.4 Score=40.44 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=26.4
Q ss_pred CeeeEEEE----c-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 85 AKLKVAIN----G-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 85 ~~vkVaIn----G-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
++.||.|. | +|.||+.+++.|.++. .+|+++..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R 88 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTR 88 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEec
Confidence 55789999 8 9999999999998753 46666654
No 122
>PLN00106 malate dehydrogenase
Probab=83.75 E-value=7.6 Score=38.38 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.4
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhC
Q 020217 87 LKVAINGF-GRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGf-GRIGR~vlR~l~~r 108 (329)
.||+|.|. |+||..++..|..+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~ 41 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN 41 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC
Confidence 59999997 99999999988754
No 123
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.73 E-value=1.7 Score=40.42 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.9
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r 108 (329)
|++||+|+|+|.||..+++.|...
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~ 24 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLAS 24 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhC
Confidence 356899999999999999998764
No 124
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=83.38 E-value=5 Score=38.04 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
-+|.|+|.|.||...+.++..+
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~ 167 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAA 167 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHc
Confidence 3699999999999988877654
No 125
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=83.30 E-value=1.6 Score=44.15 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=25.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
..+|||+|+|.||+.+++.|... ++++++.+
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~---G~~V~~~D 146 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGL---GWKVLVCD 146 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHC---CCEEEEEC
Confidence 35899999999999999998764 47877664
No 126
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=83.22 E-value=1.5 Score=45.75 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=25.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|||+|||+||+.+++.|... ++++++.+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~ 169 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF---GMKVLAYDP 169 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 5899999999999999998654 478887753
No 127
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.08 E-value=1.5 Score=45.73 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=26.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
..+|||+|+|+||+.+++.|... +++|++.+.
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~ 171 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF---GMKVIAYDP 171 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 35899999999999999998754 478888764
No 128
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=83.00 E-value=5.5 Score=37.21 Aligned_cols=30 Identities=37% Similarity=0.432 Sum_probs=23.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+||+|.|.|.+|..++..|.+.. .+|..+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG---HDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 47999999999999999887542 3555554
No 129
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=82.97 E-value=1.1 Score=38.66 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=26.2
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
..+||+|+|.|++|..|.++|.+. ..+|++|-..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a---g~~v~~v~sr 42 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA---GHEVVGVYSR 42 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT---TSEEEEESSC
T ss_pred CccEEEEECCCHHHHHHHHHHHHC---CCeEEEEEeC
Confidence 457999999999999999999865 3688887543
No 130
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.83 E-value=2.1 Score=41.37 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=25.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
..||.|.|+|++|+.+++.|.... .+|.+++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r 183 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG---ANVTVGAR 183 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEEC
Confidence 468999999999999999987652 46666644
No 131
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=82.30 E-value=1.9 Score=37.11 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=44.6
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGf-GRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
+||+|.|. |.+|..++-.|..+.. -=|++-+....+ ...+. ..|-.|..+.. +..+.+.. .
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l-~~ei~L~D~~~~-~~~g~--a~Dl~~~~~~~-------------~~~~~i~~-~ 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL-ADEIVLIDINED-KAEGE--ALDLSHASAPL-------------PSPVRITS-G 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT-SSEEEEEESSHH-HHHHH--HHHHHHHHHGS-------------TEEEEEEE-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCceEEeccCcc-cceee--ehhhhhhhhhc-------------cccccccc-c
Confidence 58999998 9999999988876542 124443432200 01111 12333322211 11233333 5
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVD 189 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~ 189 (329)
+.+.+. +.|+||-+.|..+.
T Consensus 63 ~~~~~~----~aDivvitag~~~~ 82 (141)
T PF00056_consen 63 DYEALK----DADIVVITAGVPRK 82 (141)
T ss_dssp SGGGGT----TESEEEETTSTSSS
T ss_pred cccccc----cccEEEEecccccc
Confidence 555554 88999999988643
No 132
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=82.15 E-value=4.1 Score=34.03 Aligned_cols=82 Identities=20% Similarity=0.183 Sum_probs=52.2
Q ss_pred eEEEEc----CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 020217 88 KVAING----FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (329)
Q Consensus 88 kVaInG----fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~ 163 (329)
+|||+| -+..|+.+++.|.++ ..+++.||-. ++. +.|.+ ++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~---G~~v~~Vnp~-----------~~~------------------i~G~~--~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA---GYEVYPVNPK-----------GGE------------------ILGIK--CY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT---T-EEEEESTT-----------CSE------------------ETTEE---B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC---CCEEEEECCC-----------ceE------------------ECcEE--ee-
Confidence 689999 599999999999874 3688889753 222 12211 11
Q ss_pred cCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 020217 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (329)
Q Consensus 164 ~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISA 208 (329)
.+.++++ ..+|+++-++..-...+......+.|++.|++..
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-T
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 1122121 2689999999988888888888888999998854
No 133
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.13 E-value=1.4 Score=37.30 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.8
Q ss_pred eEEEEcCChhHHHHHHHHHhC
Q 020217 88 KVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r 108 (329)
||.|.|.|.+|-.+++.|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~ 21 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS 21 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC
Confidence 589999999999999998754
No 134
>PRK08605 D-lactate dehydrogenase; Validated
Probab=82.03 E-value=1.9 Score=42.36 Aligned_cols=32 Identities=38% Similarity=0.478 Sum_probs=24.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.++|+|+|+|+||+.+++.|.. . -+++|++.+
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~-~-~g~~V~~~d 177 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAK-G-YGSDVVAYD 177 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-c-CCCEEEEEC
Confidence 3589999999999999998842 2 246777664
No 135
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=81.87 E-value=3.7 Score=40.70 Aligned_cols=144 Identities=24% Similarity=0.279 Sum_probs=73.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCC-CceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDS-PLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~-~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
+||+|.|.|.||..++-.|..+... ++-++-|++- .++--+ -|-.|+.+. .+..+++....
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~-~~~G~a----~DL~~~~~~-------------~~~~~~i~~~~ 62 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEE-KAEGVA----LDLSHAAAP-------------LGSDVKITGDG 62 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccc-cccchh----cchhhcchh-------------ccCceEEecCC
Confidence 4899999999999999888665433 4555555531 011000 122222211 11122232212
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChh----h-----------HHHHHHc-C--CCEEEEeCCCCCCCCCeEEeccCcccc
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGP----G-----------AGKHIQA-G--AKKVIITAPAKGADIPTYVVGVNEKDY 227 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e----~-----------a~~Hl~a-G--akkVIISAPsk~~DiP~iV~GVN~~~~ 227 (329)
+-++++ |.|+||-+.|.-+..- . ..+-+.. + +.-+|+|+|. |+-+++.=-+...
T Consensus 63 ~y~~~~----~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv---D~~ty~~~k~sg~- 134 (313)
T COG0039 63 DYEDLK----GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV---DILTYIAMKFSGF- 134 (313)
T ss_pred Chhhhc----CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH---HHHHHHHHHhcCC-
Confidence 222332 7888888887654321 1 1122222 2 2223447775 3322222111111
Q ss_pred CCCCCceEEcCCchhhhhhhHHHhhhhhcCceE
Q 020217 228 DHEVANIVSNASCTTNCLAPFVKVMDEELGIVK 260 (329)
Q Consensus 228 ~~~~~~IISnASCTTn~LaPvlKvL~d~fGI~~ 260 (329)
+. .++|... |+-=-+.+-..|-++||+.-
T Consensus 135 -p~-~rvig~g--t~LDsaR~~~~lae~~~v~~ 163 (313)
T COG0039 135 -PK-NRVIGSG--TVLDSARFRTFLAEKLGVSP 163 (313)
T ss_pred -Cc-cceeccc--chHHHHHHHHHHHHHhCCCh
Confidence 22 5666553 66667888999999999843
No 136
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.63 E-value=3.6 Score=41.88 Aligned_cols=98 Identities=21% Similarity=0.253 Sum_probs=57.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
+||.|.|.|.||+.+++-|..+. +.+|... |. ..+..+-+. ++..++ ++ .+.++- .+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~--d~~V~iA-dR-s~~~~~~i~--~~~~~~----v~-----~~~vD~--------~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG--DGEVTIA-DR-SKEKCARIA--ELIGGK----VE-----ALQVDA--------AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC--CceEEEE-eC-CHHHHHHHH--hhcccc----ce-----eEEecc--------cC
Confidence 58999999999999999887653 2555444 32 222322221 222221 11 122211 11
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIIS 207 (329)
.+.+.=--.+.|+||.+.+.|.+..-+...++.|+.-|-+|
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts 99 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTS 99 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcc
Confidence 11110000145999999999999998889999999654443
No 137
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=81.38 E-value=2.1 Score=42.84 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=26.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
.+|||+|+|+||+.+++.|... .++|++.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~---G~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS---GVEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC---cCEEEEEECc
Confidence 4799999999999999999764 4788777654
No 138
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=81.36 E-value=2 Score=42.61 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=28.4
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
|.++|.|+|||.+|+..+|.|..+ +.+++|+.-+.
T Consensus 1 m~~~vvqyGtG~vGv~air~l~ak--pe~elvgawv~ 35 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAK--PELELVGAWVH 35 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcC--CCCceEEEEec
Confidence 457899999999999999999876 45788776543
No 139
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=81.02 E-value=7.8 Score=40.23 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=55.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~-~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
.+||.|.|+|+-|+.++|.|.++. .++. ++|. ...+... . ..+.. ..|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G---~~v~-v~D~~~~~~~~~--~------------------~~~~~--~~i~~~~g 60 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG---AEVT-VSDDRPAPEGLA--A------------------QPLLL--EGIEVELG 60 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC---CeEE-EEcCCCCccchh--h------------------hhhhc--cCceeecC
Confidence 468999999999999999998763 4544 4442 1110000 0 00000 01222222
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCC
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGak 202 (329)
+.+. .+|. ..|+||-+=|...+.....+..+.|++
T Consensus 61 ~~~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 61 SHDD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred ccch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 3333 4565 789999999999999999988889984
No 140
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=80.81 E-value=3.3 Score=40.57 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
.||+|.|.|.+|..++..+..+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~ 28 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK 28 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 5899999999999998877654
No 141
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=79.94 E-value=2.6 Score=39.86 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=24.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+||+|+|+|.+|..+++.|... ..++++.+
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~---g~~v~~~d 32 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA---GYSLVVYD 32 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC---CCeEEEEc
Confidence 46899999999999999988764 35666554
No 142
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.62 E-value=3.3 Score=37.81 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=25.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~-vVaInd 120 (329)
.+||+|.|.|++|+.+++.|.......++ +++.++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 36899999999999999988765322344 555654
No 143
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.27 E-value=19 Score=36.52 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=24.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|.|.|.|.+|..+++.|.++. .+|+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G---~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG---ARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 48999999999999999998653 5666554
No 144
>PLN02256 arogenate dehydrogenase
Probab=77.25 E-value=3.7 Score=40.03 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=26.7
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
+.++|+|+|+|.||..+++.|.+. +.+|++++..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~---G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQ---GHTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC---CCEEEEEECc
Confidence 346899999999999999998754 2577777543
No 145
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=77.20 E-value=3.3 Score=39.16 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=24.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+||+|+|.|.||..+++.|... +.+|.+++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~---g~~V~~~d 30 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL---GHTVYGVS 30 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC---CCEEEEEE
Confidence 3799999999999999999765 25766664
No 146
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=77.07 E-value=28 Score=31.82 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=24.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|.|+|-|.+|...++.|.+.. -+|++|+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g---a~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG---AHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 58999999999999999888753 36666654
No 147
>PLN02712 arogenate dehydrogenase
Probab=76.98 E-value=3.5 Score=44.54 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=27.1
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
.+++|+|+|+|+||+.+++.|.+. +.+|++++..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~---G~~V~~~dr~ 84 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQ---GHTVLAHSRS 84 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC---CCEEEEEeCC
Confidence 456999999999999999998765 2577777543
No 148
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=76.93 E-value=15 Score=35.24 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=49.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
-+|.|+|.|.||...+.++..+. . .++++.. +.+.+..+.+ +|. +.. ++-+.-.+ . .
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G---~~~Vi~~~~--~~~~~~~a~~----lGa---~~v--------i~~~~~~~-~-~ 228 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLG---AAEIVCADV--SPRSLSLARE----MGA---DKL--------VNPQNDDL-D-H 228 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEeC--CHHHHHHHHH----cCC---cEE--------ecCCcccH-H-H
Confidence 47999999999999988876542 3 4554432 2233332222 221 111 11110001 0 0
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVII 206 (329)
-. . .. .++|+|||++|.-...+.+-..++.|-+-|++
T Consensus 229 ~~-~-~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 229 YK-A-EK--GYFDVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred Hh-c-cC--CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 00 0 01 15899999999754445566677766533333
No 149
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=76.82 E-value=4.9 Score=32.20 Aligned_cols=29 Identities=41% Similarity=0.706 Sum_probs=23.0
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 89 VaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
|.|.|+|++|+.+++.|.+.. .+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~---~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG---IDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 579999999999999998742 57777755
No 150
>PLN02712 arogenate dehydrogenase
Probab=76.74 E-value=3.4 Score=44.66 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=27.5
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
+++||+|+|+|.||+.+++.|.+. +.+|++++..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~---G~~V~~~dr~ 401 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQ---GHTVLAYSRS 401 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC---cCEEEEEECC
Confidence 457999999999999999999764 2577777654
No 151
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=76.59 E-value=2.2 Score=42.27 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r 108 (329)
..+|.|.|.|.+|..+++.|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a 46 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA 46 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc
Confidence 35899999999999999998754
No 152
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=76.25 E-value=3.8 Score=39.58 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=25.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|+|.|+|+||+.+++.|.... .+|.+++.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G---~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG---ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC---CEEEEEeC
Confidence 58999999999999999998653 57766654
No 153
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.99 E-value=5.1 Score=39.21 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
.||+|.|.|.||..++-.|..+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~ 25 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK 25 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc
Confidence 5999999999999998877655
No 154
>PRK06223 malate dehydrogenase; Reviewed
Probab=75.76 E-value=6.8 Score=37.37 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=22.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
+||+|.|.|.+|..++..+..... . +++.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~-~-ev~L~ 32 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL-G-DVVLF 32 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-e-EEEEE
Confidence 699999999999999988775421 1 55555
No 155
>PLN02214 cinnamoyl-CoA reductase
Probab=75.47 E-value=14 Score=35.69 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=24.4
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
..+|.|-| .|.||+.+++.|.++. .+|+++.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~ 41 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG---YTVKGTV 41 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEe
Confidence 35799999 8999999999998763 4665553
No 156
>PLN02602 lactate dehydrogenase
Probab=75.22 E-value=5.9 Score=39.57 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=74.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCC-CCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~-~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
.||+|.|.|.||-.++-.|..+.. ..+-++-||+. -++ +. ..|-.|.. .+.+. ++|....
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~-~~~--g~--a~DL~~~~-------------~~~~~-~~i~~~~ 98 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD-KLR--GE--MLDLQHAA-------------AFLPR-TKILAST 98 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc-hhh--HH--HHHHHhhh-------------hcCCC-CEEEeCC
Confidence 599999999999999887775532 12333333321 010 11 12332321 11111 2232222
Q ss_pred CCCCCCCccCCCcEEEcCCCCCC----Chhh------------HHHHHHcC--CCEEEEeCCCCCCCCCeEEeccCcccc
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFV----DGPG------------AGKHIQAG--AKKVIITAPAKGADIPTYVVGVNEKDY 227 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~----~~e~------------a~~Hl~aG--akkVIISAPsk~~DiP~iV~GVN~~~~ 227 (329)
+.+++ .+.|+||-+.|.-+ ++.. +..-.+.+ +.-+++|.|. |+-+.+. -....+
T Consensus 99 dy~~~----~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~-~k~sg~ 170 (350)
T PLN02602 99 DYAVT----AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVA-WKLSGF 170 (350)
T ss_pred CHHHh----CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHH-HHHhCC
Confidence 33333 38899999988753 2211 11111222 3334457664 3222111 011123
Q ss_pred CCCCCceEEcCCchhhhhhhHHHhhhhhcCceEEEEEEE
Q 020217 228 DHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266 (329)
Q Consensus 228 ~~~~~~IISnASCTTn~LaPvlKvL~d~fGI~~g~vTTv 266 (329)
.+ .+||.. ||.-=-+.+-..|.+++|+..-.|..+
T Consensus 171 p~--~rviG~--gt~LDs~R~r~~lA~~l~v~~~~V~~~ 205 (350)
T PLN02602 171 PA--NRVIGS--GTNLDSSRFRFLIADHLDVNAQDVQAY 205 (350)
T ss_pred CH--HHEEee--cchHHHHHHHHHHHHHhCCCccceeee
Confidence 22 466654 555556788888999999876555444
No 157
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.87 E-value=8 Score=38.04 Aligned_cols=150 Identities=14% Similarity=0.156 Sum_probs=75.1
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhCCC-C---CceEEEEeCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeEE
Q 020217 86 KLKVAINGF-GRIGRNFLRCWHGRKD-S---PLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLI 159 (329)
Q Consensus 86 ~vkVaInGf-GRIGR~vlR~l~~r~~-~---~l~vVaInd~-~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I 159 (329)
|.||+|.|. |.||-.++-.|..+.- . .++++-+ |. .+.+. +.-...|-.|+.+ .+.. .+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~-a~g~a~Dl~~~~~------------~~~~-~~ 66 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLL-ELPQALKA-LEGVAMELEDCAF------------PLLA-EI 66 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEE-ecCCcccc-cceeehhhhhccc------------cccC-ce
Confidence 579999997 9999999887775431 1 1244333 32 11111 1111234333321 1111 13
Q ss_pred EEEecCCCCCCCCccCCCcEEEcCCCCCCC----hhhH-----------HHHH-HcC---CCEEEEeCCCCCCCCCeEEe
Q 020217 160 KVVSNRDPLQLPWAELGIDIVIEGTGVFVD----GPGA-----------GKHI-QAG---AKKVIITAPAKGADIPTYVV 220 (329)
Q Consensus 160 ~V~~~~~P~~idW~~~GiDiVvesTG~f~~----~e~a-----------~~Hl-~aG---akkVIISAPsk~~DiP~iV~ 220 (329)
++. ..+.+.+. +.|+||-+.|.-+. +..+ ..-+ +.+ +.-+++|.|- |+-+.+.
T Consensus 67 ~i~-~~~~~~~~----daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~ 138 (322)
T cd01338 67 VIT-DDPNVAFK----DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC---NTNALIA 138 (322)
T ss_pred EEe-cCcHHHhC----CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH---HHHHHHH
Confidence 333 34555554 88999999998442 2110 0111 112 1112335553 3322222
Q ss_pred ccCccccCCCCCceEEcCCchhhhhhhHHHhhhhhcCceEEEE
Q 020217 221 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAM 263 (329)
Q Consensus 221 GVN~~~~~~~~~~IISnASCTTn~LaPvlKvL~d~fGI~~g~v 263 (329)
-=....+.+ .+|+.. |.---+.+-..|.+++|+.--.+
T Consensus 139 ~k~sg~~p~--~~ViG~---t~LDs~Rl~~~la~~lgv~~~~v 176 (322)
T cd01338 139 MKNAPDIPP--DNFTAM---TRLDHNRAKSQLAKKAGVPVTDV 176 (322)
T ss_pred HHHcCCCCh--HheEEe---hHHHHHHHHHHHHHHhCcChhHe
Confidence 111012322 567766 56677888899999999864433
No 158
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=74.83 E-value=4.2 Score=42.47 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=24.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
..+|+|+|+|+|||.+++.+..+ .++|++++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~---Ga~ViV~e 284 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGF---GARVVVTE 284 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEe
Confidence 35899999999999999998765 35766653
No 159
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=74.69 E-value=14 Score=36.78 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=48.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhh---hhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNAS---HLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~a---yLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~ 164 (329)
||.|.|.|.+|+.++|.|.++. .+| .+.|....+... .+++. . .| |+++..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G---~~V-~~sD~~~~~~~~~~~~~~~~---------------~-----~g--i~~~~g 54 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG---AEV-TVTDLKPNEELEPSMGQLRL---------------N-----EG--SVLHTG 54 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC---CEE-EEEeCCCCccchhHHHHHhh---------------c-----cC--cEEEec
Confidence 5789999999999999998763 353 455541111100 01110 0 01 222222
Q ss_pred CCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 165 ~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
.++++++ +.|+||-+.|.-.+.+......+.|.
T Consensus 55 ~~~~~~~----~~d~vv~sp~i~~~~p~~~~a~~~~i 87 (433)
T TIGR01087 55 LHLEDLN----NADLVVKSPGIPPDHPLVQAAAKRGI 87 (433)
T ss_pred CchHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 3344442 57899999999777766666666665
No 160
>PRK08507 prephenate dehydrogenase; Validated
Probab=74.66 E-value=4.8 Score=37.85 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+||+|+|+|.+|..+++.|.... ...+|++++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g-~~~~v~~~d 32 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKG-LISKVYGYD 32 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcC-CCCEEEEEc
Confidence 37999999999999999987653 234665553
No 161
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=74.61 E-value=4.5 Score=39.21 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=24.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
.++|+|+|+|.||+.++|.|-++. ..+.++.+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~ 34 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAG-LVVRIIGR 34 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcC-CeEEEEee
Confidence 468999999999999999997753 23444443
No 162
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=74.57 E-value=20 Score=33.31 Aligned_cols=137 Identities=15% Similarity=0.201 Sum_probs=68.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~-vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
-+|.|+|.|.||.+.++++..+ ... ++++ +. +.+.+..+.++ |. + ..++.+.. . .
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~---G~~~Vi~~-~~-~~~r~~~a~~~----Ga---~--------~~i~~~~~---~-~ 177 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAA---GAARVVAA-DP-SPDRRELALSF----GA---T--------ALAEPEVL---A-E 177 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEEE-CC-CHHHHHHHHHc----CC---c--------EecCchhh---H-H
Confidence 4799999999999988877654 244 6666 32 23333222111 21 1 11111000 0 0
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccc-cCCCCCceEEcCCchhhh
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKD-YDHEVANIVSNASCTTNC 244 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~-~~~~~~~IISnASCTTn~ 244 (329)
...++. ...++|+|||++|.-...+.+-..++.|.+-|++.....+ .+. .++... +..+ ..|+..-..+...
T Consensus 178 ~~~~~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~--~~~---~i~~~~~~~~~-~~i~g~~~~~~~~ 250 (280)
T TIGR03366 178 RQGGLQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG--GPV---ALDPEQVVRRW-LTIRGVHNYEPRH 250 (280)
T ss_pred HHHHHh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCC--Cce---eeCHHHHHhCC-cEEEecCCCCHHH
Confidence 000011 1237899999999755555566677666544444322211 111 223222 2222 4566554444455
Q ss_pred hhhHHHhhhh
Q 020217 245 LAPFVKVMDE 254 (329)
Q Consensus 245 LaPvlKvL~d 254 (329)
+..+++.|.+
T Consensus 251 ~~~~~~~l~~ 260 (280)
T TIGR03366 251 LDQAVRFLAA 260 (280)
T ss_pred HHHHHHHHHh
Confidence 6677777765
No 163
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=74.54 E-value=2.6 Score=42.12 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.1
Q ss_pred CeeeEEEEcCChhHHHHHHHHHh
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHG 107 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~ 107 (329)
+..+|+|.|+||||..+++-|..
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~ 183 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKP 183 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhh
Confidence 34689999999999999998865
No 164
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=74.31 E-value=5.5 Score=38.38 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
||+|.|.|.+|+.++..|..+.. .-+++.++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~-~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI-ADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 79999999999999998876531 12555554
No 165
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.75 E-value=4.5 Score=38.04 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
.+|.|.|.|-+|-.+++.|...
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~ 33 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS 33 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc
Confidence 5899999999999999999754
No 166
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=73.25 E-value=5.5 Score=38.21 Aligned_cols=32 Identities=22% Similarity=0.149 Sum_probs=25.0
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+||+|.|.|.+|+.+++.|.... .+|...+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G---~~V~~~~r 35 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG---HRVRVWSR 35 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 468999999999999999997643 46655543
No 167
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.97 E-value=16 Score=37.67 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=48.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
.+|.|.|+|++|+..++.|..+. .++++ .|. ..+....|.+ .| +. + +.| ...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G---~~v~~-~D~-~~~~~~~l~~----~g-----~~------~-~~~-------~~~ 64 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG---ARPTV-CDD-DPDALRPHAE----RG-----VA------T-VST-------SDA 64 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC---CEEEE-EcC-CHHHHHHHHh----CC-----CE------E-EcC-------cch
Confidence 47999999999999999887653 45544 553 2222222111 11 00 1 111 112
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
++.++ +.|+||.+.|.-.+.+......+.|+
T Consensus 65 ~~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 65 VQQIA----DYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred HhHhh----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 22232 56999999999877776666666665
No 168
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=72.66 E-value=12 Score=36.50 Aligned_cols=32 Identities=22% Similarity=0.076 Sum_probs=24.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
-||-|+| +|++|..+++-+..-.+ + .+..||-
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~-~-~v~~V~p 39 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGT-N-IVGGVTP 39 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCC-C-EEEEECC
Confidence 5899999 89999999888876543 2 5556664
No 169
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=72.51 E-value=22 Score=36.72 Aligned_cols=34 Identities=35% Similarity=0.516 Sum_probs=28.9
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
+..+|+|-|||-+|+.+++.|++. .-+||++.|.
T Consensus 206 ~G~rVaVQG~GNVg~~aa~~l~~~---GAkvva~sds 239 (411)
T COG0334 206 EGARVAVQGFGNVGQYAAEKLHEL---GAKVVAVSDS 239 (411)
T ss_pred CCCEEEEECccHHHHHHHHHHHHc---CCEEEEEEcC
Confidence 446999999999999999999764 3689999886
No 170
>PLN02688 pyrroline-5-carboxylate reductase
Probab=72.50 E-value=6.9 Score=36.29 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=25.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCC-CCceEEEEeCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDS 121 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~-~~l~vVaInd~ 121 (329)
+||+++|+|.+|..+++.|.+... ...++++.++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 479999999999999999986531 12366666444
No 171
>PRK05086 malate dehydrogenase; Provisional
Probab=72.24 E-value=15 Score=35.85 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=44.6
Q ss_pred CCcEEEcCCCCCCChh-----hH-------H---HHH-HcCCCEEEE--eCCCCCCCCCeEEec-c--CccccCCCCCce
Q 020217 176 GIDIVIEGTGVFVDGP-----GA-------G---KHI-QAGAKKVII--TAPAKGADIPTYVVG-V--NEKDYDHEVANI 234 (329)
Q Consensus 176 GiDiVvesTG~f~~~e-----~a-------~---~Hl-~aGakkVII--SAPsk~~DiP~iV~G-V--N~~~~~~~~~~I 234 (329)
+.|+||-+.|.-.... -+ . ..+ +.+.+++|| |.|. |+-+.+.- . +...+.+ .++
T Consensus 69 ~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~---D~~t~~~~~~~~~~sg~p~--~rv 143 (312)
T PRK05086 69 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV---NTTVAIAAEVLKKAGVYDK--NKL 143 (312)
T ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch---HHHHHHHHHHHHHhcCCCH--HHE
Confidence 7899999999865421 01 1 122 235555544 5554 33221111 1 2222322 578
Q ss_pred EEcCCchhhhhhhHHHhhhhhcCceEEEEE
Q 020217 235 VSNASCTTNCLAPFVKVMDEELGIVKGAMT 264 (329)
Q Consensus 235 ISnASCTTn~LaPvlKvL~d~fGI~~g~vT 264 (329)
|.- |+ ---+.+-..|.+.+|+..-.|.
T Consensus 144 ig~--~~-Lds~R~~~~ia~~l~~~~~~v~ 170 (312)
T PRK05086 144 FGV--TT-LDVIRSETFVAELKGKQPGEVE 170 (312)
T ss_pred Eee--ec-HHHHHHHHHHHHHhCCChhheE
Confidence 877 53 4556788889999998754443
No 172
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.53 E-value=6.1 Score=36.77 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
+||+|+|+|+||+.+++.|...
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~ 22 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS 22 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC
Confidence 3799999999999999999764
No 173
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=71.51 E-value=16 Score=37.01 Aligned_cols=98 Identities=20% Similarity=0.195 Sum_probs=52.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEE-EEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK-VVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~-V~~~~ 165 (329)
-.|+|.|.|-||-..+.-+..-. --+|++|. + ..+++..-.++--+ =.+|.+... +..
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~ag--A~~IiAvD-~-~~~Kl~~A~~fGAT---------------~~vn~~~~~~vv~-- 245 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAG--AGRIIAVD-I-NPEKLELAKKFGAT---------------HFVNPKEVDDVVE-- 245 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcC--CceEEEEe-C-CHHHHHHHHhcCCc---------------eeecchhhhhHHH--
Confidence 47999999999987766544321 24777773 3 34444333232222 123433221 100
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIIS 207 (329)
.. .+.++.|+|++||++|.-..++.+-.....|=+-|+|-
T Consensus 246 ~i--~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 246 AI--VELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred HH--HHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEe
Confidence 00 12233499999999998876655544333333334443
No 174
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=71.07 E-value=6 Score=41.98 Aligned_cols=38 Identities=26% Similarity=0.457 Sum_probs=29.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhh
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNAS 128 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~a 128 (329)
..+|.|.||||+|+.++|.|.++ +.++++|.. |++...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~--d~~~v~ 437 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN---KMRITVLER--DISAVN 437 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC---CCCEEEEEC--CHHHHH
Confidence 35799999999999999999765 368888854 455443
No 175
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=70.97 E-value=6.1 Score=37.78 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=24.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+||+|+|+|.+|..+++.|.+.. .++++.+.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g---~~v~v~dr 31 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG---HEVVGYDR 31 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC---CeEEEEEC
Confidence 37999999999999999998653 57666654
No 176
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=70.49 E-value=5.9 Score=42.28 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=28.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhh
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNA 127 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ 127 (329)
..+|-|.||||+|+.++|.|.++ ++++++|.. |++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~--d~~~v 436 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS---GVKMTVLDH--DPDHI 436 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC---CCCEEEEEC--CHHHH
Confidence 35799999999999999999865 368888843 44444
No 177
>PLN02494 adenosylhomocysteinase
Probab=70.49 E-value=6.1 Score=41.35 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|+|.|+|.||+.+++.+... .++|++++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~---Ga~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA---GARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEe
Confidence 5899999999999999998754 35777764
No 178
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=69.55 E-value=19 Score=35.01 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=23.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
-+|.|.|.|.||..++.++.... .+++++..
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~G---a~vi~~~~ 215 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFG---LKVTVISS 215 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 47899999999999888776542 46666533
No 179
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=69.20 E-value=29 Score=33.87 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=19.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r 108 (329)
..||+|.|.|.||..++-.|..+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~ 28 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQ 28 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc
Confidence 35999999999999999887765
No 180
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=68.85 E-value=11 Score=35.65 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=67.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~-vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
-+|.|+|.|.||..+++.+.... .. ++++.. +.+.+..+.+ .|. + ..++.+.-.. .
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G---~~~vi~~~~--~~~~~~~~~~----~ga---~--------~~i~~~~~~~---~ 221 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG---AEDVIGVDP--SPERLELAKA----LGA---D--------FVINSGQDDV---Q 221 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEECC--CHHHHHHHHH----hCC---C--------EEEcCCcchH---H
Confidence 47999999999999888876542 45 666643 2233322211 121 1 1111110000 0
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhhh
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~L 245 (329)
...++. ...++|+|||++|.....+.+-..++.|.+-+++..+. + +.+.. ....+..+ ..|+..-..+..-+
T Consensus 222 ~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~---~-~~~~~--~~~~~~~~-~~i~g~~~~~~~~~ 293 (339)
T cd08239 222 EIRELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGG---E-LTIEV--SNDLIRKQ-RTLIGSWYFSVPDM 293 (339)
T ss_pred HHHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCC---C-cccCc--HHHHHhCC-CEEEEEecCCHHHH
Confidence 000000 01379999999997655455566777766444443322 1 11111 01222222 34554444444566
Q ss_pred hhHHHhhhh
Q 020217 246 APFVKVMDE 254 (329)
Q Consensus 246 aPvlKvL~d 254 (329)
.-+++.+.+
T Consensus 294 ~~~~~~~~~ 302 (339)
T cd08239 294 EECAEFLAR 302 (339)
T ss_pred HHHHHHHHc
Confidence 667777765
No 181
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=68.80 E-value=25 Score=35.56 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=47.3
Q ss_pred eeEEEEcCChhHHH-HHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~-vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
.+|.|.|.|..|.. ++|.|.++. .+|. +.|....+....|-+ . | |+++...
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G---~~V~-~~D~~~~~~~~~l~~-----------------~-----g--i~~~~~~ 59 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG---YKVS-GSDLKESAVTQRLLE-----------------L-----G--AIIFIGH 59 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC---CeEE-EECCCCChHHHHHHH-----------------C-----C--CEEeCCC
Confidence 47999999999999 799998763 4543 455422112222211 0 1 1222223
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
+++.++ ++|+||-+.|.-.+.+......+.|.
T Consensus 60 ~~~~~~----~~d~vv~spgi~~~~~~~~~a~~~~i 91 (461)
T PRK00421 60 DAENIK----DADVVVYSSAIPDDNPELVAARELGI 91 (461)
T ss_pred CHHHCC----CCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 334342 57888888888776655554444454
No 182
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=68.69 E-value=6.8 Score=37.13 Aligned_cols=137 Identities=24% Similarity=0.283 Sum_probs=70.8
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC---------CChhhhhhhc-cccccccccCceEEEecCCeEEEC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLL-KYDSLLGTFKADVKIVDNETISVD 155 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~---------~d~~~~ayLL-kyDS~hG~F~g~V~v~~~~~L~in 155 (329)
..+|+|-|||-+|..+++.|.+. ...+|+|.|. .|++.+..+. ++.+.-..|... . .++
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~---Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~-~--~~~----- 100 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAEL---GAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLE-S--PDG----- 100 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHT---TEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHT-C--SST-----
T ss_pred CCEEEEECCCHHHHHHHHHHHHc---CCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccc-c--ccc-----
Confidence 36899999999999999999886 3688888653 2333333221 111101111100 0 000
Q ss_pred CeEEEEEecCCCCCCCCccCCCcEEEcCC-CCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCce
Q 020217 156 GKLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANI 234 (329)
Q Consensus 156 Gk~I~V~~~~~P~~idW~~~GiDiVvesT-G~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~I 234 (329)
.+.+.. .+ .|-+..+||.+=|. +.-++.+.+..-++.|||- |+-+ ++.|+- +.-.. .+. + ..|
T Consensus 101 ---~~~~~~--~~--~il~~~~DiliP~A~~~~I~~~~~~~~i~~~aki-Iveg----AN~p~t-~~a~~-~L~-~-rGI 164 (244)
T PF00208_consen 101 ---AEYIPN--DD--EILSVDCDILIPCALGNVINEDNAPSLIKSGAKI-IVEG----ANGPLT-PEADE-ILR-E-RGI 164 (244)
T ss_dssp ---SEEECH--HC--HGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SE-EEES----SSSSBS-HHHHH-HHH-H-TT-
T ss_pred ---eeEecc--cc--ccccccccEEEEcCCCCeeCHHHHHHHHhccCcE-EEeC----cchhcc-HHHHH-HHH-H-CCC
Confidence 011111 01 12235889888775 6777778777677878864 4433 133421 22211 232 2 467
Q ss_pred EEcCCchhhhhhhHH
Q 020217 235 VSNASCTTNCLAPFV 249 (329)
Q Consensus 235 ISnASCTTn~LaPvl 249 (329)
+-.|.=..|+-..+.
T Consensus 165 ~viPD~~aNaGGvi~ 179 (244)
T PF00208_consen 165 LVIPDFLANAGGVIV 179 (244)
T ss_dssp EEE-HHHHTTHHHHH
T ss_pred EEEcchhhcCCCeEe
Confidence 666666666655443
No 183
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=68.31 E-value=10 Score=32.97 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=31.9
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhc
Q 020217 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (329)
Q Consensus 89 VaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLL 131 (329)
|+|.| +|-||+..++.+...+ ++++|+++.--.+.+.+..+.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~-d~f~v~~Lsa~~n~~~L~~q~ 43 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP-DKFEVVALSAGSNIEKLAEQA 43 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEESSTHHHHHHHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCC-CceEEEEEEcCCCHHHHHHHH
Confidence 68999 9999999999987664 468998886654555555444
No 184
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=68.28 E-value=6.4 Score=37.20 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=24.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
||+|+|+|.+|..+++.|.+. ..+|++.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~---G~~V~~~dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA---GYQLHVTTI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC---CCeEEEEcC
Confidence 589999999999999988765 357776653
No 185
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=67.97 E-value=7.7 Score=37.12 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=24.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+|+|+|+|.+|..+++.|... ..+|++.|.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~---g~~v~v~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED---GHEVVGYDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC---CCEEEEEEC
Confidence 799999999999999998764 357776654
No 186
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.81 E-value=7.7 Score=38.57 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=25.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
++|.|.|+|++|+.+++.|.++ +.++++|..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~---g~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE---NNDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCcEEEEEC
Confidence 4799999999999999999765 357777753
No 187
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=67.72 E-value=42 Score=32.19 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=23.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
-+|.|+|.|.||..++.++.... ..++++.
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G---~~vi~~~ 197 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG---AAVVAID 197 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEc
Confidence 47999999999999888876642 4666663
No 188
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=67.67 E-value=7.6 Score=40.49 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=26.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+-+|.|.|+|++|+.++|.|.++ +.++++|..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~---g~~vvvId~ 448 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA---GIPLVVIET 448 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC---CCCEEEEEC
Confidence 35799999999999999999875 368888854
No 189
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.57 E-value=7.8 Score=39.08 Aligned_cols=42 Identities=33% Similarity=0.561 Sum_probs=34.5
Q ss_pred cCeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhh
Q 020217 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN 126 (329)
Q Consensus 84 ~~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~ 126 (329)
.+.+|+||.|.|+|++-+++.|.........||+|.++ +++.
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~ 45 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP-SLER 45 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc-cHHH
Confidence 46689999999999999999998654446899999998 4443
No 190
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.50 E-value=23 Score=36.23 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=48.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCCh---hhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGV---KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~---~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~ 163 (329)
.||+|.|+|+-|+..+|.|..+. .+++ +.|..+. +....| + ++ + +.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g---~~v~-~~d~~~~~~~~~~~~l-~---------------~~------~--~~~~~ 60 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL---PAQA-LTLFCNAVEAREVGAL-A---------------DA------A--LLVET 60 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC---CEEE-EEcCCCcccchHHHHH-h---------------hc------C--EEEeC
Confidence 48999999999999999998753 3543 4453111 110011 0 00 1 11122
Q ss_pred cCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 164 ~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
..+++.++ ++|+||-+.|+-.+.+......+.|.
T Consensus 61 ~~~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~~i 94 (468)
T PRK04690 61 EASAQRLA----AFDVVVKSPGISPYRPEALAAAARGT 94 (468)
T ss_pred CCChHHcc----CCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 22333332 57899999998877776666666665
No 191
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=67.48 E-value=11 Score=36.96 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRK 109 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~ 109 (329)
||+|+|.|.||..++-.|..+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~ 22 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC
Confidence 7999999999999988777653
No 192
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=67.37 E-value=5.7 Score=40.33 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=22.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
..+||.||||||++|++.+... .+.+|.-
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~---gm~vI~~ 175 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM---GMHVIGY 175 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc---CceEEee
Confidence 4699999999999999988653 3565554
No 193
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=67.06 E-value=8.1 Score=37.02 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=24.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+||+|+|+|++|..+++.|.+. ..+|++.+-
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~---g~~V~~~dr 31 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR---GHDCVGYDH 31 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC---CCEEEEEEC
Confidence 3799999999999999998764 357766643
No 194
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=66.95 E-value=7.8 Score=39.66 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|+|.|+|.||+.+++.+... ..+|+++.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~---Ga~ViV~d 225 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM---GARVIVTE 225 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC---cCEEEEEe
Confidence 4899999999999999988754 35777663
No 195
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=66.65 E-value=4.3 Score=39.24 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~ 109 (329)
..+|.|.|.|-+|-.++..|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 358999999999999999997643
No 196
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=66.62 E-value=8.4 Score=34.76 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=21.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
|||+|.|.|.+|-.++-++.+. ..+|+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~---G~~V~g~ 29 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK---GHQVIGV 29 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT---TSEEEEE
T ss_pred CEEEEECCCcchHHHHHHHHhC---CCEEEEE
Confidence 5899999999999888887765 3688887
No 197
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=66.57 E-value=9.9 Score=32.50 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.3
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 89 VaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
|.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R 30 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVR 30 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEec
Confidence 67899 8999999999999874 57777754
No 198
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.54 E-value=36 Score=34.83 Aligned_cols=83 Identities=24% Similarity=0.282 Sum_probs=48.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec-C
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~-~ 165 (329)
.||.|.|+|..|+.+++.|..+. .++. +.|. +......++. . .| |+++.. .
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G---~~V~-~~D~-~~~~~~~~l~----------------~-----~g--i~~~~~~~ 67 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELG---CDVV-VADD-NETARHKLIE----------------V-----TG--VADISTAE 67 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC---CEEE-EECC-ChHHHHHHHH----------------h-----cC--cEEEeCCC
Confidence 47999999999999999998653 3544 4443 2111111111 0 01 122222 2
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
++++++ +.|+||-+.|+-.+........+.|.
T Consensus 68 ~~~~~~----~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 68 ASDQLD----SFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred chhHhc----CCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 233332 57889999888777666666666665
No 199
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=66.22 E-value=3.5 Score=38.04 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
.+|.|.|.|-+|-.+++.|...
T Consensus 22 ~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc
Confidence 5899999999999999998754
No 200
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=66.21 E-value=9.9 Score=36.27 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=25.0
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCC-CCceEEEEe
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~-~~l~vVaIn 119 (329)
.+||+++|.|.+|..+++.|.++.. ..-++++.+
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~ 36 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD 36 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC
Confidence 4589999999999999999986531 123555554
No 201
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=66.18 E-value=5.2 Score=39.72 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.5
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~ 109 (329)
..+|.|.|.|-+|-.++..|....
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~G 51 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAG 51 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999987543
No 202
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=66.16 E-value=23 Score=34.32 Aligned_cols=98 Identities=21% Similarity=0.183 Sum_probs=50.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
-+|.|+|.|.||..++.++..+. . .|+++.. +.+.+..+.+ +|. + ..++.+.-... .
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G---~~~Vi~~~~--~~~r~~~a~~----~Ga---~--------~~i~~~~~~~~--~ 250 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAG---ASQVVAVDL--NEDKLALARE----LGA---T--------ATVNAGDPNAV--E 250 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCcEEEEcC--CHHHHHHHHH----cCC---c--------eEeCCCchhHH--H
Confidence 47999999999999888776542 4 4555532 3334432222 121 1 01111000000 0
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISA 208 (329)
...++ ...++|+|||++|.-...+.+-..++.|-+-|++..
T Consensus 251 ~i~~~--~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 251 QVREL--TGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred HHHHH--hCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEcc
Confidence 00001 112789999999975555556667776654344433
No 203
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=66.04 E-value=34 Score=31.87 Aligned_cols=85 Identities=21% Similarity=0.180 Sum_probs=50.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
-+|.|+|.|.+|..+++++..+. .+++++.. ..+....+.++ |. +.. ++- ++
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G---~~vi~~~~--~~~~~~~~~~~----g~---~~~--------~~~--------~~ 208 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTG---PDVVLVGR--HSEKLALARRL----GV---ETV--------LPD--------EA 208 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcC--CHHHHHHHHHc----CC---cEE--------eCc--------cc
Confidence 47899999999999998887653 56666643 23444333222 21 111 110 00
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCE
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 203 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakk 203 (329)
+ .++ .++|+++|++|.-...+.+..+++.|.+-
T Consensus 209 ~--~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~~ 241 (319)
T cd08242 209 E--SEG--GGFDVVVEATGSPSGLELALRLVRPRGTV 241 (319)
T ss_pred c--ccC--CCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence 0 122 37899999998744456666777776533
No 204
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=65.69 E-value=3.4 Score=37.05 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=24.7
Q ss_pred HHhhhhh-cCceEEEEEEEeeccCCCCC
Q 020217 249 VKVMDEE-LGIVKGAMTTTHSYTGDQAL 275 (329)
Q Consensus 249 lKvL~d~-fGI~~g~vTTvHa~T~dQ~l 275 (329)
|+||+++ ++++++.++|++++|+..+-
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~ 28 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRK 28 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHh
Confidence 6889997 99999999999999998883
No 205
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=65.55 E-value=38 Score=31.77 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
+||+|+|.|.||..++..|.+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~ 22 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA 22 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC
Confidence 4899999999999999988764
No 206
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=65.23 E-value=11 Score=36.07 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=23.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|+|+|+|.||..+++.|.... ...+|++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g-~~~~V~~~d 38 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLG-LAGEIVGAD 38 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 58999999999999999887542 113555553
No 207
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=64.38 E-value=3.4 Score=38.11 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r 108 (329)
..+|.|.|.|-+|-.++..|...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~ 50 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS 50 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc
Confidence 45899999999999999998754
No 208
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.28 E-value=32 Score=34.32 Aligned_cols=88 Identities=23% Similarity=0.285 Sum_probs=49.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
.+|.|.|-|++|..+++.|.++. .+|+++ |...-+.+..+++.=..+ + ++++....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G---~~V~~~-d~~~~~~~~~~~~~l~~~-----------~---------~~~~~~~~ 61 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG---AKVILT-DEKEEDQLKEALEELGEL-----------G---------IELVLGEY 61 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE-eCCchHHHHHHHHHHHhc-----------C---------CEEEeCCc
Confidence 57999999999999999998763 355444 432211111111000000 1 12222222
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
++++ ..+.|+||-++|...+.+......+.|.
T Consensus 62 ~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i 93 (450)
T PRK14106 62 PEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI 93 (450)
T ss_pred chhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 2221 1268999999999888776666656665
No 209
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=63.78 E-value=18 Score=35.16 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=22.9
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInGf-GRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
+||+|.|. |.+|..++..|..... .-+++.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lv 32 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLI 32 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEE
Confidence 48999995 9999999998887531 1245554
No 210
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=62.49 E-value=13 Score=33.25 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=21.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
||+|+|.|.+|+.++-.+... +++|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d 29 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA---GYEVTLYD 29 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT---TSEEEEE-
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCcEEEEE
Confidence 699999999999999887764 36766553
No 211
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=62.40 E-value=11 Score=37.54 Aligned_cols=31 Identities=35% Similarity=0.369 Sum_probs=24.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|+|+|+|.+|+.+++.|... .+++++...
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s---G~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS---GVDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC---CCEEEEEEC
Confidence 5799999999999999998764 367665443
No 212
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=62.19 E-value=23 Score=36.24 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=50.2
Q ss_pred CeeeEEEEcC----ChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEE
Q 020217 85 AKLKVAINGF----GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK 160 (329)
Q Consensus 85 ~~vkVaInGf----GRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~ 160 (329)
.+.+|+|+|. |.+|+.+++.|.+..+. -+|..||-. ++.++ |. +
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~-g~v~~Vnp~-----------~~~i~------------------G~--~ 53 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYK-GKIYPVNPK-----------AGEIL------------------GV--K 53 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCCC-CcEEEECCC-----------CCccC------------------Cc--c
Confidence 3468999995 88999999999865431 266777642 12211 11 1
Q ss_pred EEecCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 020217 161 VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (329)
Q Consensus 161 V~~~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVII 206 (329)
++ .+.++++ ..+|+++-+++.-...+-+....+.|+|.+||
T Consensus 54 ~~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 54 AY--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred cc--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 11 1122222 24677777777666666666666677776654
No 213
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=62.02 E-value=13 Score=35.25 Aligned_cols=34 Identities=12% Similarity=0.317 Sum_probs=25.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC-CCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~-~~~l~vVaInd 120 (329)
.||+|.|.|.+|..+++.|.+.. ....++++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 48999999999999999987653 11246666654
No 214
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.20 E-value=55 Score=32.90 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=48.5
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCC-hhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe-cC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS-NR 165 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d-~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~-~~ 165 (329)
-|.|+|.|.+|+.++|.|.++. .+|. +.|..+ ......|- + .+.-+++.. ..
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G---~~v~-~~D~~~~~~~~~~l~----------------~------~~~g~~~~~~~~ 61 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG---IPFA-VMDSREQPPGLDTLA----------------R------EFPDVELRCGGF 61 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC---CeEE-EEeCCCCchhHHHHH----------------h------hcCCcEEEeCCC
Confidence 5899999999999999998763 4543 455311 11111110 0 000122322 23
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
+++.++ +.|+||-+.|.-.+.+......+.|.
T Consensus 62 ~~~~~~----~~d~vV~sp~i~~~~p~~~~a~~~~i 93 (448)
T PRK03803 62 DCELLV----QASEIIISPGLALDTPALRAAAAMGI 93 (448)
T ss_pred ChHHhc----CCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 444443 56889999988777766666556665
No 215
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=61.11 E-value=4.4 Score=40.15 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.4
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRK 109 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~ 109 (329)
||.|.|.|-+|-.+++.|....
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG 22 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999997653
No 216
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=59.98 E-value=25 Score=34.42 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=25.0
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+.||-|.| +|.+|+.+++.|.+..+ . .+..||-
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~-~-~v~pVnp 41 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGT-N-IVGGVTP 41 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCC-C-EEEEECC
Confidence 35899999 89999999999886543 2 5546664
No 217
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=59.88 E-value=12 Score=37.45 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=24.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+||+|+|.|.+|..++..|.+.. .+|++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G---~~V~~~d 30 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG---HEVTGVD 30 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC---CeEEEEE
Confidence 37999999999999999987653 4777764
No 218
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.87 E-value=26 Score=35.61 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRK 109 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~ 109 (329)
.||+|.|+|+.|+.+++.|..+.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G 37 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG 37 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC
Confidence 47999999999999999998653
No 219
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.87 E-value=62 Score=33.18 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=23.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|.|.|+|..|+.++|.|..+. .+|.+ .|
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G---~~v~~-~D 37 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG---ARLRV-AD 37 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC---CEEEE-Ec
Confidence 47999999999999999998763 45544 44
No 220
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.79 E-value=37 Score=33.89 Aligned_cols=85 Identities=27% Similarity=0.431 Sum_probs=48.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCC--h-hhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG--V-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d--~-~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~ 163 (329)
.+|.|.|.|++|+.+++.|.++. .+|++. |... . .....|-. . | ++++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G---~~V~~~-d~~~~~~~~~~~~l~~---------------~-------g--~~~~~ 57 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG---ANVTVN-DGKPFSENPEAQELLE---------------E-------G--IKVIC 57 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC---CEEEEE-cCCCccchhHHHHHHh---------------c-------C--CEEEe
Confidence 47899999999999999998753 455443 4311 1 11111100 0 1 11111
Q ss_pred cCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 164 ~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
..++.++. +.++|+||-+.|.-.+........+.|.
T Consensus 58 ~~~~~~~~--~~~~d~vV~s~gi~~~~~~~~~a~~~~i 93 (447)
T PRK02472 58 GSHPLELL--DEDFDLMVKNPGIPYTNPMVEKALEKGI 93 (447)
T ss_pred CCCCHHHh--cCcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 12232221 1147899999998878776766666776
No 221
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=59.57 E-value=53 Score=33.07 Aligned_cols=165 Identities=18% Similarity=0.149 Sum_probs=87.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
-+|+|+|+|=.|...+..+... ..+|+++.-. .+++....+ + +-...+|.+ +
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~---ga~Via~~~~--~~K~e~a~~-------l--------GAd~~i~~~--------~ 219 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAM---GAEVIAITRS--EEKLELAKK-------L--------GADHVINSS--------D 219 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHc---CCeEEEEeCC--hHHHHHHHH-------h--------CCcEEEEcC--------C
Confidence 5899999998898877776544 2688888654 233321111 1 111222221 1
Q ss_pred CCCCC-CccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcc-ccCCCCCceEEcCCchhhh
Q 020217 167 PLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEK-DYDHEVANIVSNASCTTNC 244 (329)
Q Consensus 167 P~~id-W~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~-~~~~~~~~IISnASCTTn~ 244 (329)
++.++ +.+ -+|++|++.+ ..+.+.+-..|+.|-+-|++-.|... +.|.+ +.- .+-.. ..|+.+..=|-+=
T Consensus 220 ~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~-~~~~~----~~~~li~~~-~~i~GS~~g~~~d 291 (339)
T COG1064 220 SDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGG-PIPLL----PAFLLILKE-ISIVGSLVGTRAD 291 (339)
T ss_pred chhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCc-ccCCC----CHHHhhhcC-eEEEEEecCCHHH
Confidence 11111 111 1799999999 88888888888876655566555311 22211 111 11122 4677776666666
Q ss_pred hhhHHHhhhhhcCceEEEEEEEeeccCCCCCCC-CCcchhhhhccccccC
Q 020217 245 LAPFVKVMDEELGIVKGAMTTTHSYTGDQALGC-FTQGLEESESCSVEHC 293 (329)
Q Consensus 245 LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D-~~~d~~r~r~a~~~i~ 293 (329)
+--+|+...+. +|+- .++ +-+.-+| ++ ..++|++++-...-++
T Consensus 292 ~~e~l~f~~~g-~Ikp-~i~--e~~~l~~--in~A~~~m~~g~v~gR~Vi 335 (339)
T COG1064 292 LEEALDFAAEG-KIKP-EIL--ETIPLDE--INEAYERMEKGKVRGRAVI 335 (339)
T ss_pred HHHHHHHHHhC-Ccee-eEE--eeECHHH--HHHHHHHHHcCCeeeEEEe
Confidence 66666665543 3433 221 2333333 22 5556666665544433
No 222
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=59.55 E-value=65 Score=30.95 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=20.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
-+|.|.|.|.||..++.++.... ....++++
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~-g~~~vi~~ 195 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIY-PESKLVVF 195 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhc-CCCcEEEE
Confidence 47999999999998777654211 12356555
No 223
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=59.46 E-value=16 Score=34.48 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=27.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhh
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNAS 128 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~a 128 (329)
++++|.|+|.||.-+++.|... ..+|+..+.. +++..+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~a---g~eV~igs~r-~~~~~~ 39 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKA---GHEVIIGSSR-GPKALA 39 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhC---CCeEEEecCC-ChhHHH
Confidence 6899999999999999998754 3576655432 344443
No 224
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=59.41 E-value=40 Score=36.21 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=24.0
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
+...|.|-| .|.||+.+++.|.++. .+|+++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G---~~Vval 110 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLG---FRVRAG 110 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CeEEEE
Confidence 345689999 8999999999998753 466554
No 225
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=59.31 E-value=15 Score=34.67 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC-CCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~-~~~l~vVaIn 119 (329)
+||+++|.|.+|..+++.|.+.. ....++++.+
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~ 37 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN 37 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC
Confidence 58999999999999999998652 1123555554
No 226
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=58.61 E-value=16 Score=34.58 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=23.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+||+|.|.|.+|..++..|.... .++..++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g---~~V~~~~ 31 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG---HDVTLWA 31 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 58999999999999999987642 4555554
No 227
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=58.39 E-value=15 Score=35.34 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.4
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r 108 (329)
+++||+|+|.|.||..++-.|.+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~ 27 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA 27 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC
Confidence 346899999999999999888754
No 228
>PRK08818 prephenate dehydrogenase; Provisional
Probab=58.17 E-value=14 Score=37.21 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=23.9
Q ss_pred eeeEEEEcC-ChhHHHHHHHHHhCCCCCceEEEE
Q 020217 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 86 ~vkVaInGf-GRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
+.+|+|+|+ |.||+.++++|-++ . ..+|+++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~-~-~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR-M-QLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc-C-CCEEEEE
Confidence 468999998 99999999999754 1 3565444
No 229
>PRK07680 late competence protein ComER; Validated
Probab=57.69 E-value=21 Score=33.46 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=19.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
++|+|+|.|.+|..+++.|.+.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~ 22 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES 22 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC
Confidence 3799999999999999998765
No 230
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=57.68 E-value=18 Score=33.00 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=23.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+||+|.| .|.+|..+++.|.+.. -+|+.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~~ 31 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIGS 31 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 4799997 9999999999998653 3555443
No 231
>PLN02427 UDP-apiose/xylose synthase
Probab=57.43 E-value=18 Score=35.22 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=27.0
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+++||.|-| .|-||+.|++.|.++. ..+|+++..
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~r 47 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTET--PHKVLALDV 47 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcC--CCEEEEEec
Confidence 446899999 9999999999998762 257777753
No 232
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=57.34 E-value=16 Score=34.58 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.||+|+|.|.+|..+++.+... ..+|+.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~---G~~V~~~d 34 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA---GMDVWLLD 34 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc---CCeEEEEe
Confidence 4799999999999999988764 36776664
No 233
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=57.33 E-value=15 Score=36.58 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=24.5
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
...+|+|+| +|.+|+.+++.|.... .+|.+++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d 129 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILE 129 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCC---CeEEEeC
Confidence 346899999 9999999999997653 4554443
No 234
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=57.27 E-value=15 Score=36.06 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|+|+|+|.+|+.+++.|... .+++++..+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s---G~~Viv~~~ 34 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS---GLNVIVGLR 34 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC---CCeEEEEEC
Confidence 4799999999999999999764 256654444
No 235
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=57.11 E-value=4 Score=37.15 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRK 109 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~ 109 (329)
.||.|.|.|-+|..+++.|....
T Consensus 22 ~~VlviG~GglGs~ia~~La~~G 44 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAG 44 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcC
Confidence 58999999999999999987653
No 236
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=57.03 E-value=59 Score=30.34 Aligned_cols=85 Identities=21% Similarity=0.219 Sum_probs=50.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
-+|.|+|.|.+|..+++++..+ ..+++++.+.. +....+-++ |. + ..++. +.
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~---g~~v~~~~~~~--~~~~~~~~~----g~---~--------~~~~~--------~~ 220 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQ---GAEVFAFTRSG--EHQELAREL----GA---D--------WAGDS--------DD 220 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCeEEEEcCCh--HHHHHHHHh----CC---c--------EEecc--------Cc
Confidence 4788999999999988877654 36777775431 222222111 10 0 00111 00
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEE
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkV 204 (329)
+ .+.++|++++++|.....+.+..+++.|..-|
T Consensus 221 ~-----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v 253 (329)
T cd08298 221 L-----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVV 253 (329)
T ss_pred c-----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEE
Confidence 0 12378999999887666777788888766433
No 237
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=56.94 E-value=5 Score=37.74 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
.||.|.|.|-+|-.++..|...
T Consensus 25 ~~VlvvG~GglGs~va~~La~~ 46 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAA 46 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHc
Confidence 5899999999999999999754
No 238
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=56.68 E-value=16 Score=35.13 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=23.2
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
||+++|.|++|..+++.|.... .++.+.+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G---~~v~v~~ 30 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG---HQLHVTT 30 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CeEEEEe
Confidence 7999999999999999998653 4655443
No 239
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=56.55 E-value=16 Score=35.00 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=24.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.||+|+|.|.+|..+++.|.+.. .+|.+.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G---~~V~v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG---HQLQVFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 38999999999999999997653 46666654
No 240
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=56.38 E-value=38 Score=33.36 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=64.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
.+|.|.|.|.||..+++++..+. .+++++... +.+....+-+ +|. + ..++.+.. ..
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~G---a~Vi~~~~~-~~~~~~~a~~----lGa---~--------~~i~~~~~-----~~ 235 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFG---LRVTVISRS-SEKEREAIDR----LGA---D--------SFLVTTDS-----QK 235 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcC---CeEEEEeCC-hHHhHHHHHh----CCC---c--------EEEcCcCH-----HH
Confidence 47899999999999888776552 466666432 1111111111 121 1 11121100 00
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcc-ccCCCCCceEEcCCchhhhh
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEK-DYDHEVANIVSNASCTTNCL 245 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~-~~~~~~~~IISnASCTTn~L 245 (329)
..+ .. .++|+|||++|.-.....+-..++.|-+-|.+..+.. +.+ ++.. .+... ..|...-..+...+
T Consensus 236 v~~--~~-~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~--~~~-----~~~~~~~~~~-~~i~g~~~~~~~~~ 304 (375)
T PLN02178 236 MKE--AV-GTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEK--PLD-----LPIFPLVLGR-KMVGGSQIGGMKET 304 (375)
T ss_pred HHH--hh-CCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCC--CCc-----cCHHHHHhCC-eEEEEeCccCHHHH
Confidence 000 11 1689999999965444455566666654444443321 111 1111 11122 34554444455566
Q ss_pred hhHHHhhhh
Q 020217 246 APFVKVMDE 254 (329)
Q Consensus 246 aPvlKvL~d 254 (329)
.-+++.+.+
T Consensus 305 ~~~~~l~~~ 313 (375)
T PLN02178 305 QEMLEFCAK 313 (375)
T ss_pred HHHHHHHHh
Confidence 667776654
No 241
>PRK06545 prephenate dehydrogenase; Validated
Probab=56.34 E-value=15 Score=36.18 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=22.7
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
+|+|+|+|.||..+++.|.... ..+.++..
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G-~~v~i~~~ 31 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG-PDVFIIGY 31 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC-CCeEEEEe
Confidence 6999999999999999997653 23444433
No 242
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=54.57 E-value=23 Score=34.30 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=29.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC-CCCceEEEEeCCCChhhhhhhc
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLL 131 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~-~~~l~vVaInd~~d~~~~ayLL 131 (329)
+||+++|+|.+|+.+++-|.... -+.-+|++.|. ..+.+.+|.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~--~~e~~~~l~ 45 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR--SEEKRAALA 45 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC--CHHHHHHHH
Confidence 58999999999999999998764 12245555543 344443343
No 243
>PRK05442 malate dehydrogenase; Provisional
Probab=54.15 E-value=24 Score=34.82 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=75.1
Q ss_pred CeeeEEEEcC-ChhHHHHHHHHHhCCC-C---CceEEEEeCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeE
Q 020217 85 AKLKVAINGF-GRIGRNFLRCWHGRKD-S---PLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKL 158 (329)
Q Consensus 85 ~~vkVaInGf-GRIGR~vlR~l~~r~~-~---~l~vVaInd~-~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~ 158 (329)
.|.||+|.|. |.||..++-.|..+.- . .++++-+ |. .+.+. +.=...|-.|..+. ..+ .
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~Li-Di~~~~~~-~~g~a~Dl~~~~~~------------~~~-~ 67 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLL-EIPPALKA-LEGVVMELDDCAFP------------LLA-G 67 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEE-ecCCcccc-cceeehhhhhhhhh------------hcC-C
Confidence 4579999996 9999998877665321 1 1244433 22 11110 11112233333211 111 1
Q ss_pred EEEEecCCCCCCCCccCCCcEEEcCCCCCC----ChhhH-----------HHHHHc-C---CCEEEEeCCCCCCCCCeEE
Q 020217 159 IKVVSNRDPLQLPWAELGIDIVIEGTGVFV----DGPGA-----------GKHIQA-G---AKKVIITAPAKGADIPTYV 219 (329)
Q Consensus 159 I~V~~~~~P~~idW~~~GiDiVvesTG~f~----~~e~a-----------~~Hl~a-G---akkVIISAPsk~~DiP~iV 219 (329)
+++. ..+.+.+. +.|+||-+.|.-+ ++..+ ..-++. + +.-+++|.|- |+-+++
T Consensus 68 ~~i~-~~~y~~~~----daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v 139 (326)
T PRK05442 68 VVIT-DDPNVAFK----DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALI 139 (326)
T ss_pred cEEe-cChHHHhC----CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHH
Confidence 2232 24445553 8899998888643 22211 011111 2 2123336654 433322
Q ss_pred eccCccccCCCCCceEEcCCchhhhhhhHHHhhhhhcCceEEEEEE
Q 020217 220 VGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265 (329)
Q Consensus 220 ~GVN~~~~~~~~~~IISnASCTTn~LaPvlKvL~d~fGI~~g~vTT 265 (329)
.-=....+.+ ++||.- |+-=-+.+-..|.+++||.--.|..
T Consensus 140 ~~k~s~g~p~--~rViG~---t~LDs~R~r~~la~~l~v~~~~V~~ 180 (326)
T PRK05442 140 AMKNAPDLPA--ENFTAM---TRLDHNRALSQLAAKAGVPVADIKK 180 (326)
T ss_pred HHHHcCCCCH--HHEEee---eHHHHHHHHHHHHHHhCcChHHeEE
Confidence 2111002322 567766 5555678888999999997655443
No 244
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=54.11 E-value=14 Score=35.71 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=23.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
..+|+|+|.|.||+.+++.|..... -+++.++
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~--~~V~v~~ 209 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGV--AEITIAN 209 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCC--CEEEEEe
Confidence 4689999999999999999876421 2444454
No 245
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=54.10 E-value=21 Score=34.39 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=24.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+||+|.|.|.+|..++..|.... .+|..++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G---~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG---VPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 58999999999999999887642 46666654
No 246
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=54.08 E-value=58 Score=31.50 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=22.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaIn 119 (329)
-+|.|+|.|.+|..+++++... .. .++++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~---G~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIA---GASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEe
Confidence 4799999999999988877654 24 465553
No 247
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.82 E-value=91 Score=31.21 Aligned_cols=105 Identities=20% Similarity=0.312 Sum_probs=58.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec-C
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~-~ 165 (329)
.+|.|.|+|..|+..++.|..+. .+|.+ .|........ +.+. .| +.++.. .
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G---~~v~~-~D~~~~~~~~---------------------~~l~-~g--~~~~~~~~ 58 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG---VTPRV-IDTRITPPGL---------------------DKLP-EN--VERHTGSL 58 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC---CeEEE-EcCCCCchhH---------------------HHHh-cC--CEEEeCCC
Confidence 47999999999999999877652 45444 4431100000 0010 01 122221 2
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeE-EeccCcc
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTY-VVGVNEK 225 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAP---sk~~DiP~i-V~GVN~~ 225 (329)
++..++ +.|+||-+.|.-.+.+......+.|++ |++-+ ..-.+.|.| |-|-|.+
T Consensus 59 ~~~~~~----~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~~~el~~~~~~~~~I~VTGTnGK 116 (438)
T PRK03806 59 NDEWLL----AADLIVASPGIALAHPSLSAAADAGIE--IVGDIELFCREAQAPIVAITGSNGK 116 (438)
T ss_pred CHHHhc----CCCEEEECCCCCCCCHHHHHHHHCCCe--EEEHHHHHhhhcCCCEEEEeCCCCH
Confidence 222232 468999999998787777788888885 45421 111134544 6677654
No 248
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=53.66 E-value=69 Score=31.15 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=22.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaI 118 (329)
-+|.|+|.|.||...+.++... .. +++++
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~---G~~~Vi~~ 216 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMA---KASRIIAI 216 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEE
Confidence 4799999999999988877654 24 56666
No 249
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=53.60 E-value=10 Score=33.78 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.7
Q ss_pred eEEEEcCChhHHHHHHHHHhC
Q 020217 88 KVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r 108 (329)
||.|.|.|-+|-.++..|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~ 21 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS 21 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc
Confidence 689999999999999988754
No 250
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=53.52 E-value=21 Score=27.73 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
.+++|.|+|.+|+.+++.|.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 5899999999999999988764
No 251
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=53.16 E-value=20 Score=35.69 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=26.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+.+|.|.|+|++|+.+++.|.++ +.++++|..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~---~~~v~vid~ 262 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKE---GYSVKLIER 262 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCeEEEEEC
Confidence 46899999999999999998765 357777743
No 252
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=52.81 E-value=25 Score=32.07 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=24.5
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+++|.|.| .|.||+.+++.|.++. .+|+++.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g---~~V~~~~ 48 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG---FAVKAGV 48 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC---CEEEEEe
Confidence 46899999 8999999999988753 4665543
No 253
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=52.75 E-value=13 Score=34.84 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=20.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
+||+|+|.|.+|..+++.|.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~ 25 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS 25 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC
Confidence 5899999999999999999865
No 254
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=52.71 E-value=20 Score=34.36 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
++|+|+|.|.+|..++..|..+. .+|++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G---~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG---HEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC---CeeEEEeC
Confidence 47999999999999999887653 56666643
No 255
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.60 E-value=21 Score=33.83 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=23.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.||+|+|.|.+|+.++..|.... .+|+.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G---~~V~~~d 31 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG---FQTTLVD 31 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC---CcEEEEe
Confidence 37999999999999999887652 4665553
No 256
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=52.51 E-value=89 Score=29.58 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=46.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
-+|.|.|.|.+|+.+++.+... ..+++++... .+...++.+ .| .+ ..++.+....
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~---G~~v~~~~~~--~~~~~~~~~----~g---~~--------~vi~~~~~~~----- 225 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKAL---GAEVTAFSRS--PSKKEDALK----LG---AD--------EFIATKDPEA----- 225 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHc---CCeEEEEcCC--HHHHHHHHH----cC---Cc--------EEecCcchhh-----
Confidence 4688889999999888777654 2466665432 222222211 11 00 0111110000
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
...+ ..++|+|+|++|.-...+.+-.+++.+.
T Consensus 226 ~~~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G 257 (337)
T cd05283 226 MKKA---AGSLDLIIDTVSASHDLDPYLSLLKPGG 257 (337)
T ss_pred hhhc---cCCceEEEECCCCcchHHHHHHHhcCCC
Confidence 0011 2379999999997644566667777655
No 257
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=52.14 E-value=24 Score=36.21 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=31.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhh
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHL 130 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayL 130 (329)
.||+|.| +|-||...++++.... .+++|+++.-..+.+.+...
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~-~~f~v~~Laa~~n~~~L~~q 45 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNP-DHFQVVALSAGKNVALMVEQ 45 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHH
Confidence 4899999 9999999999876543 35888888654455444443
No 258
>PLN02740 Alcohol dehydrogenase-like
Probab=52.05 E-value=30 Score=33.77 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=22.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaI 118 (329)
-+|.|+|.|.||..+++++..+. . +|+++
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G---~~~Vi~~ 229 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARG---ASKIIGV 229 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CCcEEEE
Confidence 47999999999999988876542 4 46655
No 259
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=51.94 E-value=54 Score=30.45 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=50.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
-+|.|+| .|.+|..+++++... ..+++++... .+....+.+ +|. +.+ ++.+.-.+
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~---G~~vi~~~~s--~~~~~~l~~----~Ga----------~~v-i~~~~~~~---- 200 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIK---GCKVIGCAGS--DDKVAWLKE----LGF----------DAV-FNYKTVSL---- 200 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCC--HHHHHHHHH----cCC----------CEE-EeCCCccH----
Confidence 4789999 799999998887654 3577666432 233333322 221 011 11100000
Q ss_pred CCCCC-CCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 020217 166 DPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (329)
Q Consensus 166 ~P~~i-dW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVII 206 (329)
.+.+ .+...|+|+|+|++|. ...+.+..++..|.+-|.+
T Consensus 201 -~~~v~~~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 201 -EEALKEAAPDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred -HHHHHHHCCCCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 0000 1222479999999997 4455556777666543333
No 260
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=51.82 E-value=23 Score=33.61 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=24.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.||+|+|.|.+|..++..+... ..+|+.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~---G~~V~l~d 33 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART---GYDVTIVD 33 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc---CCeEEEEe
Confidence 4799999999999999988765 25766664
No 261
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.46 E-value=25 Score=33.47 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.||+|+|.|.+|..++..|... ..+|+.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~---g~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK---GLQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC---CCeEEEEE
Confidence 4899999999999999988754 25666664
No 262
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=50.55 E-value=86 Score=30.33 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=22.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaI 118 (329)
-+|.|+|-|.||...++++... .. .++++
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~---G~~~vi~~ 217 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAA---GASRIIGI 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEE
Confidence 4799999999999988887654 24 46555
No 263
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=49.19 E-value=38 Score=32.71 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=23.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaIn 119 (329)
-+|.|.|.|.||..+++++... .. +++++.
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~---G~~~vi~~~ 219 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIR---GASRIIGVD 219 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEc
Confidence 4799999999999998887654 24 566663
No 264
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.13 E-value=96 Score=31.15 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=49.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCC-ChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~-d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
.+|.|.|.|.+|+.++|.|.++. ..|++. |.. ..+....|- .. ..| |+++...
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g---~~v~~~-d~~~~~~~~~~l~-----------------~~---~~g--i~~~~g~ 59 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG---AEVAAY-DAELKPERVAQIG-----------------KM---FDG--LVFYTGR 59 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE-eCCCCchhHHHHh-----------------hc---cCC--cEEEeCC
Confidence 47999999999999999998763 465544 431 111111110 00 001 2222222
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
.++.+ + .+.|+||-+.|.-.+........+.|.
T Consensus 60 ~~~~~-~--~~~d~vv~spgi~~~~p~~~~a~~~~i 92 (445)
T PRK04308 60 LKDAL-D--NGFDILALSPGISERQPDIEAFKQNGG 92 (445)
T ss_pred CCHHH-H--hCCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 22211 1 267999999999887777766666666
No 265
>PRK06444 prephenate dehydrogenase; Provisional
Probab=49.04 E-value=16 Score=33.72 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=18.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r 108 (329)
+||+|+| .|+.|+.+.+.+...
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~ 23 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN 23 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC
Confidence 4899999 799999999988653
No 266
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=48.94 E-value=26 Score=36.02 Aligned_cols=29 Identities=21% Similarity=0.517 Sum_probs=23.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
.+|+|.|+|.||+.+++.+.... .+++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G---a~ViV~ 231 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG---ARVIVT 231 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE
Confidence 48999999999999999886542 466654
No 267
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.88 E-value=26 Score=33.03 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.||+|+|.|.+|..++..+.... .+|+.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g---~~V~~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG---YDVVMVD 33 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC---CceEEEe
Confidence 47999999999999999887652 4666663
No 268
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=48.84 E-value=6.2 Score=37.23 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRK 109 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~ 109 (329)
||.|+|.|-+|-.+++.|....
T Consensus 1 kVlvvG~GGlG~eilk~La~~G 22 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG 22 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 5899999999999999987654
No 269
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=48.80 E-value=32 Score=30.08 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=25.5
Q ss_pred cCeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 84 ~~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
..+.||+|.|.|++|...++++... ..+++.+.+
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l---Ga~v~~~d~ 51 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL---GAEVVVPDE 51 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT---T-EEEEEES
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC---CCEEEeccC
Confidence 3568999999999999999999875 357766654
No 270
>PRK05865 hypothetical protein; Provisional
Probab=48.66 E-value=59 Score=36.55 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=24.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+||.|-| .|.||+.+++.|.++. .+|+++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G---~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG---HEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEEC
Confidence 3799999 8999999999998753 47666643
No 271
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=48.63 E-value=31 Score=34.47 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=30.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhh
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNA 127 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ 127 (329)
++||||.|. .+|+..++++.+.. .++++|+|-|. +.+..
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~-~~~eLvaV~d~-~~erA 41 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAP-ERFELAGILAQ-GSERS 41 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCC-CCcEEEEEEcC-CHHHH
Confidence 479999999 68999999887542 26899999987 44433
No 272
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=48.59 E-value=75 Score=30.54 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=22.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~-vVaIn 119 (329)
.+|.|+|.|.||..++.++... ..+ ++++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~---G~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALA---GASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEc
Confidence 4799999999999988877654 243 66663
No 273
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=48.22 E-value=7.8 Score=36.47 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r 108 (329)
..||.|.|.|-+|-.+++.|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc
Confidence 35899999999999999998754
No 274
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=47.78 E-value=29 Score=31.33 Aligned_cols=22 Identities=27% Similarity=0.720 Sum_probs=17.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
.++.|.|||.+||-+++.|...
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~ 45 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL 45 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT
T ss_pred CEEEEeCCCcccHHHHHHHhhC
Confidence 4799999999999999999775
No 275
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=47.47 E-value=1.5e+02 Score=27.78 Aligned_cols=97 Identities=19% Similarity=0.133 Sum_probs=49.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~-vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
.+|.|+|-|.+|..+++++... ..+ ++++.. +.+....+.+|.. +. .++.+.-...+
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~---g~~~v~~~~~--s~~~~~~~~~~g~--------------~~-~~~~~~~~~~~-- 224 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKAS---GARKVIVSDL--NEFRLEFAKKLGA--------------DY-TIDAAEEDLVE-- 224 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEECC--CHHHHHHHHHhCC--------------cE-EecCCccCHHH--
Confidence 4799999999999998877654 245 555532 3333333322221 00 11111000000
Q ss_pred CC-CCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 020217 166 DP-LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (329)
Q Consensus 166 ~P-~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIIS 207 (329)
.. ...+ ..++|+|++++|.-.....+..+++.+.+-|.+.
T Consensus 225 ~i~~~~~--~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 225 KVRELTD--GRGADVVIVATGSPEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred HHHHHhC--CcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEe
Confidence 00 0011 1368999999885433444556777766444443
No 276
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=47.43 E-value=70 Score=30.95 Aligned_cols=137 Identities=16% Similarity=0.170 Sum_probs=67.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
.+|.|+|.|.||..+++++.... ..++++... .+.+..+++ .+|. +..+ .....-.+
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G---~~vi~~~~~--~~~~~~~~~---~~Ga---~~~i-------~~~~~~~~----- 238 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMG---HHVTVISSS--DKKREEALE---HLGA---DDYL-------VSSDAAEM----- 238 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC---CeEEEEeCC--HHHHHHHHH---hcCC---cEEe-------cCCChHHH-----
Confidence 47889999999999888876542 466666442 222222221 1221 1111 00000001
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccc-cCCCCCceEEcCCchhhhh
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKD-YDHEVANIVSNASCTTNCL 245 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~-~~~~~~~IISnASCTTn~L 245 (329)
.+.. .++|+|||++|.-...+.+-..++.|.+-|++..+.. ..+ ++... +... ..+......+..-+
T Consensus 239 -~~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~--~~~-----~~~~~~~~~~-~~i~g~~~~~~~~~ 306 (357)
T PLN02514 239 -QEAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINT--PLQ-----FVTPMLMLGR-KVITGSFIGSMKET 306 (357)
T ss_pred -HHhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCC--CCc-----ccHHHHhhCC-cEEEEEecCCHHHH
Confidence 0111 2689999999965455555566766664444443321 111 22221 1122 35555544444445
Q ss_pred hhHHHhhhhhcCce
Q 020217 246 APFVKVMDEELGIV 259 (329)
Q Consensus 246 aPvlKvL~d~fGI~ 259 (329)
.-++..+.+. .++
T Consensus 307 ~~~~~~~~~g-~l~ 319 (357)
T PLN02514 307 EEMLEFCKEK-GLT 319 (357)
T ss_pred HHHHHHHHhC-CCc
Confidence 5566655554 344
No 277
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.04 E-value=1.3e+02 Score=30.28 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=49.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec-C
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~-~ 165 (329)
.+|.|.|.|.+|+..++.|.... ...+|. +.|........ +.|. .| |+++.. .
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~-~~~~v~-~~D~~~~~~~~---------------------~~l~-~g--~~~~~g~~ 61 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQ-PQLTVK-VIDTRETPPGQ---------------------EQLP-ED--VELHSGGW 61 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcC-CCCeEE-EEeCCCCchhH---------------------HHhh-cC--CEEEeCCC
Confidence 47999999999999999888652 124543 44531100000 0110 01 223222 3
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
++++++ +.|+||-+.|+-.+.+......+.|.
T Consensus 62 ~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 62 NLEWLL----EADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred ChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 455553 57899999999877776666666665
No 278
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=47.03 E-value=30 Score=35.34 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=33.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhc
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLL 131 (329)
.|+.|.| +|-||..-|..+...+ ..++|+++.-...++.+.-..
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p-~~f~vval~ag~n~~~l~~q~ 46 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNP-DKFEVVALAAGKNVELLAEQI 46 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCC-CcEEEEEEecCCcHHHHHHHH
Confidence 5899999 9999999999887653 458899887655555554433
No 279
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=46.88 E-value=29 Score=34.71 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=25.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+.+|.|.|+|++|+.+++.+.... .+|++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d~ 198 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG---ATVTILDI 198 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC---CeEEEEEC
Confidence 457999999999999999987653 46666643
No 280
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=46.85 E-value=28 Score=35.24 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|+|+|+|.||+.+++.|.... --+++++|.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G--~~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKG--VGKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCC--CCEEEEEeC
Confidence 58999999999999999997652 135666654
No 281
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=46.54 E-value=40 Score=33.31 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=74.7
Q ss_pred CeeeEEEEcC-ChhHHHHHHHHHhCCC-C---CceEEEEeCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeE
Q 020217 85 AKLKVAINGF-GRIGRNFLRCWHGRKD-S---PLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKL 158 (329)
Q Consensus 85 ~~vkVaInGf-GRIGR~vlR~l~~r~~-~---~l~vVaInd~-~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~ 158 (329)
.|.||+|.|. |.||-.++-.|..+.- . .++++-+ |. .+.+. +.=...|-.|..+. ...+
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~~-a~g~a~Dl~~~~~~-----------~~~~-- 66 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLL-DIPPAMKA-LEGVAMELEDCAFP-----------LLAG-- 66 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEE-ecCCcccc-cchHHHHHhhcccc-----------ccCC--
Confidence 4689999996 9999999887775531 1 1244444 22 11110 11112344443211 0111
Q ss_pred EEEEecCCCCCCCCccCCCcEEEcCCCCCC----ChhhH------------HHHHHcCC-CEE--EEeCCCCCCCCCeEE
Q 020217 159 IKVVSNRDPLQLPWAELGIDIVIEGTGVFV----DGPGA------------GKHIQAGA-KKV--IITAPAKGADIPTYV 219 (329)
Q Consensus 159 I~V~~~~~P~~idW~~~GiDiVvesTG~f~----~~e~a------------~~Hl~aGa-kkV--IISAPsk~~DiP~iV 219 (329)
+++. ..+.+.+. +.|+||-+.|.-+ ++..+ +.-.+.+- +.+ ++|.|- |+-+.+
T Consensus 67 ~~i~-~~~~~~~~----daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v 138 (323)
T TIGR01759 67 VVAT-TDPEEAFK----DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALI 138 (323)
T ss_pred cEEe-cChHHHhC----CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHH
Confidence 1222 24445553 8899999988843 22211 11111122 222 235553 332222
Q ss_pred eccCccccCCCCCceEEcCCchhhhhhhHHHhhhhhcCceEEEE
Q 020217 220 VGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAM 263 (329)
Q Consensus 220 ~GVN~~~~~~~~~~IISnASCTTn~LaPvlKvL~d~fGI~~g~v 263 (329)
.-=....|.+ ++||. . |+-=-+.+=..|-+++|+.--.|
T Consensus 139 ~~k~s~g~p~--~rViG--~-t~LDs~R~r~~la~~l~v~~~~V 177 (323)
T TIGR01759 139 ASKNAPDIPP--KNFSA--M-TRLDHNRAKYQLAAKAGVPVSDV 177 (323)
T ss_pred HHHHcCCCCH--HHEEE--e-eHHHHHHHHHHHHHHhCcChHHe
Confidence 1000002322 57887 3 56667888888999999866555
No 282
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=46.40 E-value=36 Score=25.78 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRK 109 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~ 109 (329)
||+|+|-|.||-.++..|.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g 22 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG 22 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhC
Confidence 6899999999999999998753
No 283
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=46.30 E-value=28 Score=35.21 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=25.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+||+|+|.|.+|..++..|.++. .+|++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G---~~V~~~D 33 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ---KQVIGVD 33 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC---CEEEEEe
Confidence 58999999999999999988753 5777775
No 284
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.25 E-value=33 Score=32.49 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=23.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.||+|+|.|.+|..++..|... ..+|+.++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~---G~~V~l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA---GYDVLLND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCeEEEEe
Confidence 5899999999999999988764 25666553
No 285
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=46.25 E-value=1.6e+02 Score=31.39 Aligned_cols=57 Identities=28% Similarity=0.373 Sum_probs=39.1
Q ss_pred CCCcCHHHHHHhhcccccccCCCCccccccCeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 55 ARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
..+..+.-|++.-+.+.. .. ...+-.||.|-|||-+|--..+.|.+.. =.+|+|.|.
T Consensus 227 ATG~GV~~y~e~~~~~~~--~~-----~~~kgkr~~i~G~Gnv~~~aa~~l~~~G---~kvvavsD~ 283 (514)
T KOG2250|consen 227 ATGRGVVYYVEAILNDAN--GK-----KGIKGKRVVIQGFGNVGGHAAKKLSEKG---AKVVAVSDS 283 (514)
T ss_pred ccchhHHHHHHHHHHhcc--CC-----CCcCceEEEEeCCCchHHHHHHHHHhcC---CEEEEEEcC
Confidence 456667777777666543 11 2234468999999999999988888653 366666663
No 286
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=45.96 E-value=8.2 Score=40.23 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=23.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|+|+|.|.+|-..+..|..+ ..+++++.
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~---G~~V~v~e 167 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRM---GHAVTIFE 167 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCeEEEEe
Confidence 5899999999999888887654 25766664
No 287
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=45.93 E-value=30 Score=31.09 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=24.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
++|.|-| +|.||+.+++.|.++. -+|+++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~---~~v~~~~r 32 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG---HEVRAAVR 32 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC---CEEEEEEe
Confidence 3688999 9999999999999873 45555544
No 288
>PRK08655 prephenate dehydrogenase; Provisional
Probab=45.88 E-value=30 Score=35.41 Aligned_cols=30 Identities=30% Similarity=0.615 Sum_probs=23.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+||+|+| +|.||+.+++.|.+.. .+|++++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G---~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG---FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC---CEEEEEE
Confidence 4799998 9999999999997653 4655554
No 289
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=45.69 E-value=95 Score=28.41 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=23.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~-vVaInd 120 (329)
.+|.|+|.|.+|..+++++... ..+ ++++..
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~---g~~~v~~~~~ 162 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAA---GARRVIAIDR 162 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEECC
Confidence 4789999999999999888764 356 666644
No 290
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=45.64 E-value=30 Score=35.80 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=24.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+||+|+|.|.||..++..|... .++|++.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~---G~~V~v~D 34 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA---GIDVAVFD 34 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEEe
Confidence 5899999999999999988764 35665554
No 291
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=45.61 E-value=20 Score=34.87 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=58.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC--CChhhhhhhccccccccccCceEEEecCCeEEECCe-EEEEE-
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK-LIKVV- 162 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~--~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk-~I~V~- 162 (329)
-+|.|.|.|=+|--++++|......++.+|-..+. ..++.-.|-+. ++.|+-+-++. .+.-..||-. .|..+
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~--~~iGk~Kv~vm--~eri~~InP~c~V~~~~ 106 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALL--GDIGKPKVEVM--KERIKQINPECEVTAIN 106 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhh--hhcccHHHHHH--HHHHHhhCCCceEeehH
Confidence 47999999999999999997554344554433332 23333333332 23344322221 1121223321 11111
Q ss_pred ---ecCCCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHc-CCCEEEEe
Q 020217 163 ---SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA-GAKKVIIT 207 (329)
Q Consensus 163 ---~~~~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~a-GakkVIIS 207 (329)
.+.+.+++- ..+.||||||.-....+-.+-.+... +. +||-|
T Consensus 107 ~f~t~en~~~~~--~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki-~vIss 152 (263)
T COG1179 107 DFITEENLEDLL--SKGFDYVIDAIDSVRAKVALIAYCRRNKI-PVISS 152 (263)
T ss_pred hhhCHhHHHHHh--cCCCCEEEEchhhhHHHHHHHHHHHHcCC-CEEee
Confidence 112222232 23889999998888777655554443 44 44433
No 292
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=45.24 E-value=77 Score=30.12 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=22.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaIn 119 (329)
-+|.|+|.|.+|..+++.+... .. .++++.
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~---G~~~v~~~~ 204 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAA---GASKIIVSE 204 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEEEC
Confidence 4799999999999999888764 25 555553
No 293
>PLN02778 3,5-epimerase/4-reductase
Probab=45.20 E-value=25 Score=33.47 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.0
Q ss_pred ccCeeeEEEEc-CChhHHHHHHHHHhCC
Q 020217 83 TVAKLKVAING-FGRIGRNFLRCWHGRK 109 (329)
Q Consensus 83 ~~~~vkVaInG-fGRIGR~vlR~l~~r~ 109 (329)
+.+++||-|-| .|-||+.|++.|.++.
T Consensus 6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g 33 (298)
T PLN02778 6 GSATLKFLIYGKTGWIGGLLGKLCQEQG 33 (298)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCC
Confidence 34667999999 9999999999998763
No 294
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=45.17 E-value=37 Score=32.23 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=26.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
|||-|.| .|.||..+.+.|.++ ..++++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~---~~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER---GYEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT---SEEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhC---CCEEEEeCc
Confidence 6899999 899999999998764 368888853
No 295
>PLN02827 Alcohol dehydrogenase-like
Probab=45.13 E-value=92 Score=30.54 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
-+|.|+|.|.||..+++++..+
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~ 216 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLR 216 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999988877654
No 296
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=45.03 E-value=92 Score=29.62 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
-+|.|+|.|.+|..+++++...
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~ 183 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVAL 183 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999988877654
No 297
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.83 E-value=49 Score=33.18 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=22.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
||.|+|.|..|+..++.|..+. .+|.+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G---~~V~~~ 29 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG---WEVVVS 29 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CEEEEE
Confidence 6899999999999999988753 454443
No 298
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=44.61 E-value=35 Score=34.71 Aligned_cols=34 Identities=24% Similarity=0.553 Sum_probs=27.8
Q ss_pred cCeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 84 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 84 ~~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
..++||.|-| .|-||+.|++.|.++. .+|+++..
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr 152 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDN 152 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 3457999999 9999999999998863 57877743
No 299
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=44.55 E-value=41 Score=34.28 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.3
Q ss_pred CeeeEEEEcC-ChhHHHHHHHHHhCC
Q 020217 85 AKLKVAINGF-GRIGRNFLRCWHGRK 109 (329)
Q Consensus 85 ~~vkVaInGf-GRIGR~vlR~l~~r~ 109 (329)
.++||+|.|. |+||-.++-.|..+.
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcc
Confidence 4699999997 999999998877553
No 300
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=43.77 E-value=1.2e+02 Score=33.45 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=23.1
Q ss_pred eEEEEcCChhHHHH-HHHHHhCCCCCceEEEEeCC
Q 020217 88 KVAINGFGRIGRNF-LRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 88 kVaInGfGRIGR~v-lR~l~~r~~~~l~vVaInd~ 121 (329)
+|.|.|.|.+|... +|.|..+. .+|. +.|.
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G---~~V~-~sD~ 36 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRG---YSVS-GSDL 36 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCC---CeEE-EECC
Confidence 69999999999987 89988763 4543 4554
No 301
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=43.58 E-value=30 Score=35.29 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=24.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
++||+|+|.|.+|..++..|.+ ..+|++++-
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~----~~~V~g~D~ 36 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK----SRQVVGFDV 36 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc----CCEEEEEeC
Confidence 3689999999999999988653 268888753
No 302
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=43.52 E-value=2e+02 Score=30.52 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.5
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r 108 (329)
.+-||+|.|.|.||...++.+...
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l 187 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL 187 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC
Confidence 356999999999999998888654
No 303
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=43.46 E-value=47 Score=36.44 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=23.8
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
...+|+|+|.|.+|.-++-.+... .++|+.+
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~---G~~V~l~ 364 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDK---GLKTVLK 364 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhC---CCcEEEe
Confidence 335799999999999999877653 3676655
No 304
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=43.37 E-value=26 Score=38.06 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=23.7
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
...||+|+|.|.+|+-++-.+..+. .++|+.+
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~ 339 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA--GLPVRIK 339 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc--CCeEEEE
Confidence 3458999999999999998766232 3676554
No 305
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=43.27 E-value=27 Score=35.15 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.1
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r 108 (329)
..+|.|.|.|-+|-.++..|...
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHc
Confidence 35899999999999999998754
No 306
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=42.71 E-value=43 Score=32.91 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.8
Q ss_pred CeeeEEEEcC-ChhHHHHHHHHHhC
Q 020217 85 AKLKVAINGF-GRIGRNFLRCWHGR 108 (329)
Q Consensus 85 ~~vkVaInGf-GRIGR~vlR~l~~r 108 (329)
+|.||+|.|. |.||..++..|..+
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~ 25 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKG 25 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhC
Confidence 3689999996 99999999988764
No 307
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=42.61 E-value=97 Score=28.90 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=23.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|.|.|-|-+|+.+++++... ..+++++..
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~---G~~v~~~~~ 194 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAM---GFETVAITR 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEeC
Confidence 4789999888999988887654 257666654
No 308
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=42.59 E-value=1e+02 Score=30.83 Aligned_cols=63 Identities=17% Similarity=0.092 Sum_probs=38.5
Q ss_pred CcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCccccCCCCCceEEcCCchhhh
Q 020217 177 IDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (329)
Q Consensus 177 iDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~~~~~~~~~IISnASCTTn~ 244 (329)
-|++|.....-...+-.+.|++-|+ +|+++-- -.|+.+.|.-+|.=.+-+ -.+|+.++-.|..
T Consensus 231 e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~-P~dvd~~vk~~~~V~Ii~--GGlV~~s~~it~g 293 (351)
T COG5322 231 EDILVWVASMPKGVEIFPQHLKPGC--LIVDGGY-PKDVDTSVKNVGGVRIIP--GGLVEHSLDITWG 293 (351)
T ss_pred cceEEEEeecCCCceechhhccCCe--EEEcCCc-CcccccccccCCCeEEec--CccccCccccchh
Confidence 3555555444455566789999999 8898632 126667777676433333 3567766655443
No 309
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=42.52 E-value=38 Score=28.64 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=52.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
.+|.|.|.|-+||.++..|..... =+|..+|.. .+....|.+ . | ++..+.+....+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~--~~i~i~nRt--~~ra~~l~~--~----~--------------~~~~~~~~~~~~ 68 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGA--KEITIVNRT--PERAEALAE--E----F--------------GGVNIEAIPLED 68 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTS--SEEEEEESS--HHHHHHHHH--H----H--------------TGCSEEEEEGGG
T ss_pred CEEEEECCHHHHHHHHHHHHHcCC--CEEEEEECC--HHHHHHHHH--H----c--------------CccccceeeHHH
Confidence 589999999999999999988642 246667763 333333321 0 0 111122322222
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCC--EEEEeC
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK--KVIITA 208 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGak--kVIISA 208 (329)
..+ .....|+||-+|+.-... --..+++.+-+ +++++-
T Consensus 69 ~~~---~~~~~DivI~aT~~~~~~-i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 69 LEE---ALQEADIVINATPSGMPI-ITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp HCH---HHHTESEEEE-SSTTSTS-STHHHHTTTCHHCSEEEES
T ss_pred HHH---HHhhCCeEEEecCCCCcc-cCHHHHHHHHhhhhceecc
Confidence 211 112689999999986542 22344554432 477864
No 310
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.34 E-value=34 Score=34.24 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=48.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
.+|.|+|+|.+|+.+++.|.++. .+|++..+. .+. +.+ .+.. ++. . ...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G---~~V~g~D~~--~~~---~~~----~~~~--------~~~---------~--~~~ 52 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG---VYVIGVDKS--LEA---LQS----CPYI--------HER---------Y--LEN 52 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC---CEEEEEeCC--ccc---cch----hHHH--------hhh---------h--cCC
Confidence 37999999999999999998753 455544321 110 100 0000 000 0 011
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCC
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGak 202 (329)
++.+. .+.|+||-+.|.-.+.+.+...++.|++
T Consensus 53 ~~~~~---~~~dlvV~s~gi~~~~~~l~~A~~~g~~ 85 (418)
T PRK00683 53 AEEFP---EQVDLVVRSPGIKKEHPWVQAAIASHIP 85 (418)
T ss_pred cHHHh---cCCCEEEECCCCCCCcHHHHHHHHCCCc
Confidence 22221 1468888888888777777788888884
No 311
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=42.27 E-value=29 Score=29.03 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=20.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r 108 (329)
..+|+|.|.|.+|+.+++.|...
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~ 41 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAEL 41 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC
Confidence 35899999999999999999764
No 312
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=41.96 E-value=34 Score=34.50 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=27.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhc
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLL 131 (329)
|||+|+|.|.+|..++.++. . ..+|++++- +.+.+..|.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~---G~~VigvD~--d~~kv~~l~ 39 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q---NHEVVALDI--LPSRVAMLN 39 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h---CCcEEEEEC--CHHHHHHHH
Confidence 37999999999999996553 3 268887753 445554443
No 313
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=41.69 E-value=18 Score=37.58 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.9
Q ss_pred CeeeEEEEcC-ChhHHHHHHHHHhC
Q 020217 85 AKLKVAINGF-GRIGRNFLRCWHGR 108 (329)
Q Consensus 85 ~~vkVaInGf-GRIGR~vlR~l~~r 108 (329)
.++||+|.|. |.||-.++-.|..+
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc
Confidence 4789999998 99999999887765
No 314
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=41.68 E-value=36 Score=28.43 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=21.9
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 89 VaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
|+|+|.|.||.+++-.|.+. ..+|..+-.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~---g~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA---GHDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT---TCEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHC---CCceEEEEc
Confidence 68999999999999888663 245555544
No 315
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=41.57 E-value=13 Score=40.45 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=21.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~ 109 (329)
..||.|.|.|-+|-.++|.|....
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~G 361 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWG 361 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC
Confidence 468999999999999999998654
No 316
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=41.19 E-value=33 Score=35.70 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=25.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|||+|.|.+|..+++.|.++. .+|.+.|-
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G---~~V~v~dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG---FKISVYNR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC---CeEEEEeC
Confidence 37999999999999999998753 57666654
No 317
>PRK07877 hypothetical protein; Provisional
Probab=40.91 E-value=14 Score=40.52 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=54.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCC-CCceEEEEeCC-----CChhhhhhhccccccccccCceEEEecCCeEEECC-eE
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDS-----GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KL 158 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~-~~l~vVaInd~-----~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inG-k~ 158 (329)
..+|+|.|.| +|-.++..|..... +.+. |-|. .+++.. ++. .+.-|+.+.++- ...-..+|- -.
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~---lvD~D~ve~sNLnRq--~~~-~~diG~~Kv~~a--~~~l~~inp~i~ 177 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELR---LADFDTLELSNLNRV--PAG-VFDLGVNKAVVA--ARRIAELDPYLP 177 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEE---EEcCCEEcccccccc--cCC-hhhcccHHHHHH--HHHHHHHCCCCE
Confidence 4589999999 99999988865431 2233 3333 233332 111 122355433222 111112332 24
Q ss_pred EEEEecC-CCCCCCCccCCCcEEEcCCCCCCChhhHHHH-HHcCCC
Q 020217 159 IKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKH-IQAGAK 202 (329)
Q Consensus 159 I~V~~~~-~P~~idW~~~GiDiVvesTG~f~~~e~a~~H-l~aGak 202 (329)
|..+.+. ++++++=--.++|+||||+..|.++-.+-.. .+.|..
T Consensus 178 v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP 223 (722)
T PRK07877 178 VEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIP 223 (722)
T ss_pred EEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 4444432 3333321112789999999998766554433 334554
No 318
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=40.83 E-value=61 Score=33.48 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.0
Q ss_pred cCeeeEEEEc-CChhHHHHHHHHHhCC
Q 020217 84 VAKLKVAING-FGRIGRNFLRCWHGRK 109 (329)
Q Consensus 84 ~~~vkVaInG-fGRIGR~vlR~l~~r~ 109 (329)
..+.+|.|.| +|++||++.+.|.++.
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrg 103 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRG 103 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCC
Confidence 3557899999 9999999999999885
No 319
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=40.72 E-value=31 Score=35.81 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=24.8
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+|||+|+|.+|..+++.|.+.. .+|++.|.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G---~~V~v~dr 30 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG---FTVSVYNR 30 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC---CeEEEEeC
Confidence 4899999999999999998753 57777765
No 320
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=40.60 E-value=14 Score=40.03 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=22.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
..||+|+|.|.+|+.++..+..+. .++|+.+
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~--G~~V~l~ 334 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKA--GIPVRIK 334 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHc--CCeEEEE
Confidence 358999999999999987664322 3565443
No 321
>PLN02572 UDP-sulfoquinovose synthase
Probab=40.47 E-value=52 Score=33.44 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=25.8
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+.++|-|-| .|.||+.+++.|.++. .+|+++.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRG---YEVAIVD 78 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 446899999 9999999999998763 5777663
No 322
>PTZ00357 methyltransferase; Provisional
Probab=40.44 E-value=78 Score=35.46 Aligned_cols=103 Identities=17% Similarity=0.292 Sum_probs=51.7
Q ss_pred CeeeEEEEcCChhHHHHHHHHHh--CCCCCceEEEEeCCCChhhhhhhc-ccccccccc-------CceEEEecCCeEEE
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHG--RKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTF-------KADVKIVDNETISV 154 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~--r~~~~l~vVaInd~~d~~~~ayLL-kyDS~hG~F-------~g~V~v~~~~~L~i 154 (329)
..+.|.|.|-|| |-+|-++|.. ..+-+++|.+|.+- ++.+++++ ++- ..-.| .+.|++.. -
T Consensus 700 ~~vVImVVGAGR-GPLVdraLrAak~~gvkVrIyAVEKN--PpAA~~tllr~~-N~eeW~n~~~~~G~~VtII~-----s 770 (1072)
T PTZ00357 700 RTLHLVLLGCGR-GPLIDECLHAVSALGVRLRIFAIEKN--LPAAAFTRMRWA-NDPEWTQLAYTFGHTLEVIV-----A 770 (1072)
T ss_pred ceEEEEEEcCCc-cHHHHHHHHHHHHcCCcEEEEEEecC--cchHHHHHHHHh-cccccccccccCCCeEEEEe-----C
Confidence 446799999988 6666555532 12346899999873 23233333 221 11123 22333321 1
Q ss_pred CCeEEEEEec--CCCCCCCCccCCCcEEE-cCCCCCCChhhHHHHHH
Q 020217 155 DGKLIKVVSN--RDPLQLPWAELGIDIVI-EGTGVFVDGPGAGKHIQ 198 (329)
Q Consensus 155 nGk~I~V~~~--~~P~~idW~~~GiDiVv-esTG~f~~~e~a~~Hl~ 198 (329)
+.+.+..-.+ ......+|+ .+|||| |=-|.|-+-|-.+.-|.
T Consensus 771 DMR~W~~pe~~~s~~~P~~~g--KaDIVVSELLGSFGDNELSPECLD 815 (1072)
T PTZ00357 771 DGRTIATAAENGSLTLPADFG--LCDLIVSELLGSLGDNELSPECLE 815 (1072)
T ss_pred ccccccccccccccccccccc--ccceehHhhhcccccccCCHHHHH
Confidence 1111111000 000122343 689766 77899999887665554
No 323
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=40.04 E-value=43 Score=32.27 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=18.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHh
Q 020217 86 KLKVAINGFGRIGRNFLRCWHG 107 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~ 107 (329)
.+||+|.|.|.||-.+.-.|..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~ 23 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLAR 23 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHh
Confidence 4689999999999988877754
No 324
>PLN02206 UDP-glucuronate decarboxylase
Probab=39.99 E-value=43 Score=34.21 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=26.4
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
..+||.|-| .|-||+.|++.|.++. .+|+++.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G---~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG---DSVIVVD 150 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc---CEEEEEe
Confidence 347899999 9999999999998863 4777764
No 325
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=39.95 E-value=1.5e+02 Score=27.88 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
-+|.|+|.|.+|..+++++...
T Consensus 163 ~~VlI~g~g~vg~~~~~la~~~ 184 (341)
T cd08262 163 EVALVIGCGPIGLAVIAALKAR 184 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4789999999999988877654
No 326
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=39.83 E-value=46 Score=31.80 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=25.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
++|.|-| .|.||+.+++.|.++. ..+|++++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~--~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT--DWEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC--CCeEEEEe
Confidence 4799999 8999999999998642 25777775
No 327
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=39.76 E-value=12 Score=37.25 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r 108 (329)
..+|.|.|.|-+|..++..|...
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~ 157 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAA 157 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc
Confidence 45899999999999999998754
No 328
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=39.72 E-value=1.4e+02 Score=28.55 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=22.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaIn 119 (329)
.+|.|.|.|.+|..+++++... .. .++++.
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~---G~~~v~~~~ 209 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLA---GARRVIVID 209 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEc
Confidence 4789999999999998877654 25 566663
No 329
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=39.60 E-value=56 Score=31.26 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=20.4
Q ss_pred EEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 89 VaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
|+|+|.|.+|..++..+..+.. . +++.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l-~-eV~L~ 28 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKEL-G-DVVLL 28 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCC-c-EEEEE
Confidence 6899999999999887765421 1 65555
No 330
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.31 E-value=46 Score=31.88 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=73.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhh-------hccccccccccCceEEEecCCeEEECCeEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASH-------LLKYDSLLGTFKADVKIVDNETISVDGKLI 159 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ay-------LLkyDS~hG~F~g~V~v~~~~~L~inGk~I 159 (329)
.||||+|.|.+|+.++..+... ..+|+.++- +.+.+.. +|..--..|.....- . +..+ ..|
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~--~~~~----~~l 73 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA---GVDVLVFET--TEELATAGRNRIEKSLERAVSRGKLTERE-R--DAAL----ARL 73 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC---CCEEEEEEC--CHHHHHHHHHHHHHHHHHHHhcccCChhh-H--HHHH----hCe
Confidence 3899999999999999887654 367665543 2222221 111001112221100 0 0000 122
Q ss_pred EEEecCCCCCCCCccCCCcEEEcCCCCCCChhhH-----HHHH-HcCCCEEEEeCCCCC--------CCCCe---EEecc
Q 020217 160 KVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA-----GKHI-QAGAKKVIITAPAKG--------ADIPT---YVVGV 222 (329)
Q Consensus 160 ~V~~~~~P~~idW~~~GiDiVvesTG~f~~~e~a-----~~Hl-~aGakkVIISAPsk~--------~DiP~---iV~GV 222 (329)
++ ..+.+.+ .++|+||||...-...+.. ..+. ..|+ +|.|..+-- ...|- -+.-.
T Consensus 74 ~~--~~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~ 145 (286)
T PRK07819 74 RF--TTDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFF 145 (286)
T ss_pred Ee--eCCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecC
Confidence 22 2333333 3899999997655443322 2333 3344 777655410 01131 23344
Q ss_pred CccccCCCCCceEEcCCchhhhhhhHHHhhhhhcCc
Q 020217 223 NEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGI 258 (329)
Q Consensus 223 N~~~~~~~~~~IISnASCTTn~LaPvlKvL~d~fGI 258 (329)
|+--+.+. -.||..+.+.-..+.-+...+.+.+|-
T Consensus 146 ~P~~~~~l-vElv~~~~T~~~~~~~~~~~~~~~lgk 180 (286)
T PRK07819 146 NPVPVLPL-VELVPTLVTSEATVARAEEFASDVLGK 180 (286)
T ss_pred CCcccCce-EEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 53323232 356666666666666666665655664
No 331
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=39.29 E-value=1.2e+02 Score=28.64 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|.|.|.|-+|+.+++.|.+.. .++..+|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g---~~v~v~~R 148 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD---CNVIIANR 148 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 47999999999999999988652 46666654
No 332
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=39.15 E-value=33 Score=37.46 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=23.9
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
...+|+|+|.|.+|.-++-.+... .++|+.+
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~---G~~V~l~ 342 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASK---GTPIVMK 342 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhC---CCeEEEE
Confidence 345899999999999999877653 4676555
No 333
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=38.99 E-value=29 Score=35.65 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.2
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r 108 (329)
.+.+|||.|||-.|+.+++-+...
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~a 74 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDA 74 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhc
Confidence 457999999999999999988765
No 334
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.93 E-value=46 Score=32.87 Aligned_cols=29 Identities=31% Similarity=0.297 Sum_probs=23.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
.||||+|.|.||+.++..+... .++|+..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a---G~~V~l~ 36 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH---GLDVVAW 36 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEE
Confidence 4799999999999999887754 3676655
No 335
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=38.69 E-value=2.3e+02 Score=24.95 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=22.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
-+|.|+|.|.+|+.+++.+.... .+++++.
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g---~~v~~~~ 165 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAG---ARVIVTD 165 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEc
Confidence 47999997779999988876542 5666664
No 336
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=38.60 E-value=49 Score=31.14 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=24.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
|||.|-| .|-||+.+++.|.++. .+|+++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEe
Confidence 4799999 8999999999998753 5777764
No 337
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=38.43 E-value=36 Score=35.71 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=26.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+||++|+|.+|+.+++-|.++. .+|++-|-
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G---~~V~V~NR 37 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKG---FPISVYNR 37 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCC---CeEEEECC
Confidence 58999999999999999998753 68777765
No 338
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=38.20 E-value=1.4e+02 Score=28.79 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=48.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~-vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
-+|.|+|-|.+|..+++++.... .+ ++++... .+... +++ .+|. + ..++.+...+. .
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G---~~~v~~~~~~--~~k~~-~~~---~~g~----------~-~~i~~~~~~~~--~ 245 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAG---CTTIIAVDIV--DSRLE-LAK---ELGA----------T-HVINPKEEDLV--A 245 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEeCC--HHHHH-HHH---HcCC----------c-EEecCCCcCHH--H
Confidence 47999999999999888776552 43 5544332 22222 221 1111 0 11111100000 0
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVII 206 (329)
...++ ...++|+|+|++|.-...+.+..++..+.+-|.+
T Consensus 246 ~v~~~--~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 246 AIREI--TGGGVDYALDTTGVPAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred HHHHH--hCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEe
Confidence 00011 1348999999998644445666777766643333
No 339
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.12 E-value=51 Score=31.25 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=22.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
.||+|.|.|.+|..++..+.... .+|+.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G---~~V~l~ 32 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG---FDVTIY 32 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC---CeEEEE
Confidence 48999999999999998887542 455545
No 340
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=38.06 E-value=13 Score=37.29 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.2
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r 108 (329)
..+|.|.|.|-+|..++..|...
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~ 63 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASA 63 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc
Confidence 35899999999999999998764
No 341
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=37.99 E-value=1.4e+02 Score=28.91 Aligned_cols=30 Identities=17% Similarity=-0.011 Sum_probs=22.7
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGf-GRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
-+|.|+|- |.||..+++++..+ ..+++++.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~---G~~Vi~~~ 190 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLH---GCYVVGSA 190 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHc---CCEEEEEc
Confidence 47999995 99999988877654 25666653
No 342
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=37.75 E-value=57 Score=28.63 Aligned_cols=30 Identities=27% Similarity=0.135 Sum_probs=24.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|.|+|-|.+|...++.|.+.. -+|++|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g---a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG---AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 58999999999999999998753 3666664
No 343
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=37.62 E-value=1.9e+02 Score=26.69 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=50.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
-+|.|+|-|.+|..+++++..+. .+++++.. ..+....+-++ |. . .+ ++.+.-.. .+.
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G---~~V~~~~~--s~~~~~~~~~~----g~-~---------~~-~~~~~~~~-~~~- 224 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMG---AAVIAVDI--KEEKLELAKEL----GA-D---------EV-LNSLDDSP-KDK- 224 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CEEEEEcC--CHHHHHHHHHh----CC-C---------EE-EcCCCcCH-HHH-
Confidence 37888899999999988877652 56666643 22333222111 11 0 00 11000000 000
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVII 206 (329)
....+ ..++|+|+|+.|.-...+.+..+++.|.+-|.+
T Consensus 225 ~~~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 225 KAAGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHHhc--CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 00011 237899999998654556667888877643333
No 344
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=37.60 E-value=53 Score=32.27 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=26.0
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.++||.|-| .|-||+.+++.|.++. .+|+++.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G---~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEG---HYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCC---CEEEEEE
Confidence 357899999 8999999999998753 5777664
No 345
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=37.49 E-value=35 Score=33.51 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=28.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccc
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKY 133 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLky 133 (329)
++++.+|+||.|.++.+-|..+. -++|+-. . +.+....|-.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g---hdvV~yD-~-n~~av~~~~~~ 42 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG---HDVVGYD-V-NQTAVEELKDE 42 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC---CeEEEEc-C-CHHHHHHHHhc
Confidence 47899999999999999888753 4766652 2 33444444433
No 346
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=37.26 E-value=1.6e+02 Score=27.92 Aligned_cols=30 Identities=17% Similarity=0.020 Sum_probs=22.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
-+|.|+| .|.+|..+++++..+ ..+++++.
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~---G~~Vi~~~ 183 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLK---GCYVVGSA 183 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHc---CCEEEEEe
Confidence 4799999 599999998887654 35666653
No 347
>PRK08219 short chain dehydrogenase; Provisional
Probab=37.22 E-value=50 Score=28.80 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=23.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+++.|.| .|.||+.+++.|.++ . +|+++..
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~---~V~~~~r 34 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-H---TLLLGGR 34 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-C---CEEEEeC
Confidence 4788999 899999999998875 3 5555543
No 348
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.94 E-value=1.3e+02 Score=29.11 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=15.6
Q ss_pred eeEEEEcCCh-hHHHHHHHHHhC
Q 020217 87 LKVAINGFGR-IGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGR-IGR~vlR~l~~r 108 (329)
.+|.|.|.|. +||-++..|.++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~ 182 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNA 182 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC
Confidence 4678888765 788777776654
No 349
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=36.92 E-value=88 Score=29.56 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=51.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
-+|.|.|-|.+|..+++++.... .+++++... .+.+..+-++ |. + .+++.+.-.+. +.
T Consensus 165 ~~vlV~g~g~iG~~~~~~a~~~G---~~vi~~~~~--~~~~~~~~~~----g~----------~-~~i~~~~~~~~--~~ 222 (333)
T cd08296 165 DLVAVQGIGGLGHLAVQYAAKMG---FRTVAISRG--SDKADLARKL----GA----------H-HYIDTSKEDVA--EA 222 (333)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEeCC--hHHHHHHHHc----CC----------c-EEecCCCccHH--HH
Confidence 37999999999999988887653 466666442 2233322221 11 0 11221110000 00
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIIS 207 (329)
. ..| .++|+++|++|.-...+.+-.++..|..-|.+.
T Consensus 223 ~--~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 223 L--QEL--GGAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred H--Hhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 0 112 278999999875445555667777665444443
No 350
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=36.76 E-value=1.8e+02 Score=26.40 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=22.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~-vVaIn 119 (329)
-+|.|+|.|.+|..+++.+.... .. ++++.
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g---~~~vi~~~ 129 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAG---AREVVGVD 129 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCcEEEEC
Confidence 47899999999999888876543 45 66664
No 351
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=36.70 E-value=1.4e+02 Score=27.42 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=46.5
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
+|.|+| .|.+|..+++++.... .+++++.. +.+.+.++.++ |. + ..++.+... ..
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~--~~~~~~~~~~~----g~----------~-~~~~~~~~~----~~ 204 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLG---YTVVALTG--KEEQADYLKSL----GA----------S-EVLDREDLL----DE 204 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcC---CEEEEEeC--CHHHHHHHHhc----CC----------c-EEEcchhHH----HH
Confidence 699999 5999999988776542 45555533 23344444322 11 0 111111000 00
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
... .+...++|+|+|++|. ...+.+..++..+.
T Consensus 205 ~~~-~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g 237 (325)
T cd05280 205 SKK-PLLKARWAGAIDTVGG-DVLANLLKQTKYGG 237 (325)
T ss_pred HHH-HhcCCCccEEEECCch-HHHHHHHHhhcCCC
Confidence 000 1122378999999987 34555566666544
No 352
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=36.64 E-value=38 Score=28.31 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=50.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC-CChhhhhhhccccc-cccccCceEEEecCCeEE-EC-CeEEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDS-LLGTFKADVKIVDNETIS-VD-GKLIKVV 162 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~-~d~~~~ayLLkyDS-~hG~F~g~V~v~~~~~L~-in-Gk~I~V~ 162 (329)
.||.|.|.|.+|-.+++.|..... -++..+.+- .+++.+..-+-|.. .-|++..+.-. +.|. +| +-.++.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv--~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~---~~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGV--GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAK---ERLQEINPDVEVEAI 77 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTT--SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHH---HHHHHHSTTSEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhCC--CceeecCCcceeecccccccccccccchhHHHHHHH---HHHHHhcCceeeeee
Confidence 489999999999999999875422 133334332 23333333111221 22544322211 0111 22 2234443
Q ss_pred ecCC-CCCC-CCccCCCcEEEcCCCCCCChhhHHHHH
Q 020217 163 SNRD-PLQL-PWAELGIDIVIEGTGVFVDGPGAGKHI 197 (329)
Q Consensus 163 ~~~~-P~~i-dW~~~GiDiVvesTG~f~~~e~a~~Hl 197 (329)
...- ++++ .+- .+.|+||+|+..+..+..+....
T Consensus 78 ~~~~~~~~~~~~~-~~~d~vi~~~d~~~~~~~l~~~~ 113 (135)
T PF00899_consen 78 PEKIDEENIEELL-KDYDIVIDCVDSLAARLLLNEIC 113 (135)
T ss_dssp ESHCSHHHHHHHH-HTSSEEEEESSSHHHHHHHHHHH
T ss_pred ecccccccccccc-cCCCEEEEecCCHHHHHHHHHHH
Confidence 3221 1111 111 27899999988866655554443
No 353
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=36.59 E-value=55 Score=31.70 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=19.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
+||+|+|.|.+|..++..|..+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~ 22 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR 22 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4899999999999999988765
No 354
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=36.53 E-value=1.8e+02 Score=28.76 Aligned_cols=34 Identities=15% Similarity=-0.077 Sum_probs=23.0
Q ss_pred CCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 020217 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (329)
Q Consensus 175 ~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISA 208 (329)
.|+|+|||++|.-.....+-.++..+-+.|++..
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 4799999999865555556667765554455544
No 355
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=36.20 E-value=1.7e+02 Score=27.51 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=23.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaI 118 (329)
-+|.|+|.|.+|..+++++..+. + .++++
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~g---~~~v~~~ 198 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVLG---AARVFAV 198 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CceEEEE
Confidence 57899999999999998887653 4 56777
No 356
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=36.18 E-value=1.6e+02 Score=29.36 Aligned_cols=32 Identities=28% Similarity=0.218 Sum_probs=22.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
-+|.|.|.|.||..++.++..+. ..+|.+.+.
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~G---a~~vi~~d~ 218 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLG---AAVVIVGDL 218 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CceEEEeCC
Confidence 47888999999999888776542 454445443
No 357
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=36.12 E-value=59 Score=32.37 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=24.9
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.++|.|.| .|.||+.+++.|.++. .+|+++.
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~ 91 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG---YNVVAVA 91 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 35899999 8999999999998763 4666554
No 358
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=36.06 E-value=54 Score=31.59 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=25.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+||.|-| .|-||+.+++.|.++. .+|+++..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d~ 47 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN---QTVIGLDN 47 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 5899999 8999999999998763 57777743
No 359
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=35.88 E-value=1.1e+02 Score=29.54 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
-+|.|+|-|.+|..++.++..+
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~ 206 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAA 206 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4789999999999988887654
No 360
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=35.84 E-value=3.3e+02 Score=24.80 Aligned_cols=88 Identities=23% Similarity=0.268 Sum_probs=50.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
..|.|.| .|.+|+.+++.+.... .+++++.. +.+....+.+ +|. + .......
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g---~~v~~~~~--~~~~~~~~~~----~g~---~-------~~~~~~~-------- 186 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAG---AHVVAVVG--SPARAEGLRE----LGA---A-------EVVVGGS-------- 186 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CEEEEEeC--CHHHHHHHHH----cCC---c-------EEEeccc--------
Confidence 4789999 5999999988876542 46666643 2233333222 121 0 1111110
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIIS 207 (329)
++...++|+|+|++|.- ..+.+-.++..+..-|.+.
T Consensus 187 -----~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 187 -----ELSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSVG 222 (305)
T ss_pred -----cccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEEe
Confidence 11223789999999974 4556667887766444454
No 361
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=35.44 E-value=34 Score=34.09 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=22.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
|||.+.|.|.|||-.+-.++.+.+ .+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g--~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG--FEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC--CeEEEEE
Confidence 489999999999976655555532 5666664
No 362
>PRK08223 hypothetical protein; Validated
Probab=35.37 E-value=19 Score=35.24 Aligned_cols=97 Identities=21% Similarity=0.214 Sum_probs=47.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC--CChhhhhhhcccc-ccccccCceEEEecCCeEEECC-eEEEE
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKYD-SLLGTFKADVKIVDNETISVDG-KLIKV 161 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~--~d~~~~ayLLkyD-S~hG~F~g~V~v~~~~~L~inG-k~I~V 161 (329)
.-+|.|+|.|-+|-.++..|.... +.-+.|-|. .++..+---+-|+ +.-|+.+.++.. +.-..+|- -.|+.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aG---VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~--~~l~~iNP~v~V~~ 101 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLG---IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLA--EMVRDINPELEIRA 101 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhC---CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHH--HHHHHHCCCCEEEE
Confidence 358999999999999999887543 332334343 2222222111121 223554332211 11111232 12333
Q ss_pred EecC-CCCCCCCccCCCcEEEcCCCCC
Q 020217 162 VSNR-DPLQLPWAELGIDIVIEGTGVF 187 (329)
Q Consensus 162 ~~~~-~P~~idW~~~GiDiVvesTG~f 187 (329)
+.+. ++++++.--.+.|+|||++..|
T Consensus 102 ~~~~l~~~n~~~ll~~~DlVvD~~D~~ 128 (287)
T PRK08223 102 FPEGIGKENADAFLDGVDVYVDGLDFF 128 (287)
T ss_pred EecccCccCHHHHHhCCCEEEECCCCC
Confidence 3322 2333221113789999999876
No 363
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=35.25 E-value=2.2e+02 Score=27.30 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=22.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~-vVaIn 119 (329)
-+|.|+|.|.+|..+++++.... .. ++++.
T Consensus 189 ~~VlI~g~g~vG~~~~~lak~~G---~~~vi~~~ 219 (367)
T cd08263 189 ETVAVIGVGGVGSSAIQLAKAFG---ASPIIAVD 219 (367)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CCeEEEEe
Confidence 47889999999999998886542 45 55553
No 364
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=35.00 E-value=3.7e+02 Score=25.12 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=67.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
-.|.|+|.|.+|..+++++.... .+++++....+.+....+.++ |. . .+ +.+.-.+. ..
T Consensus 166 ~~vlI~g~g~~g~~~~~la~~~G---~~v~~~~~~~~~~~~~~~~~~----g~-~---------~~--~~~~~~~~--~~ 224 (306)
T cd08258 166 DTVVVFGPGPIGLLAAQVAKLQG---ATVVVVGTEKDEVRLDVAKEL----GA-D---------AV--NGGEEDLA--EL 224 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CEEEEECCCCCHHHHHHHHHh----CC-c---------cc--CCCcCCHH--HH
Confidence 46888999999999998887653 566666222233333222221 11 0 00 10000000 00
Q ss_pred CCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeccCcc-ccCCCCCceEEcCCchhhhh
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEK-DYDHEVANIVSNASCTTNCL 245 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPsk~~DiP~iV~GVN~~-~~~~~~~~IISnASCTTn~L 245 (329)
...+ ....++|+++|+.|.-........+++.+-+-|.+.... + .+ + .+|.. .+... -.|..+-.++...+
T Consensus 225 l~~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~--~~-~--~~~~~~~~~~~-~~i~g~~~~~~~~~ 296 (306)
T cd08258 225 VNEI-TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFG-P--LA-A--SIDVERIIQKE-LSVIGSRSSTPASW 296 (306)
T ss_pred HHHH-cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC-C--CC-c--ccCHHHHhhcC-cEEEEEecCchHhH
Confidence 0000 112378999999875334445567777655444444332 1 11 1 11211 22222 45666666666677
Q ss_pred hhHHHhhhh
Q 020217 246 APFVKVMDE 254 (329)
Q Consensus 246 aPvlKvL~d 254 (329)
.-+++.+++
T Consensus 297 ~~~~~~~~~ 305 (306)
T cd08258 297 ETALRLLAS 305 (306)
T ss_pred HHHHHHHhc
Confidence 777766654
No 365
>PRK07411 hypothetical protein; Validated
Probab=34.77 E-value=17 Score=36.67 Aligned_cols=183 Identities=13% Similarity=0.064 Sum_probs=83.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC--CChhhhhh--hccccccccccCceEEEecCCeE-EECC-eEE
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASH--LLKYDSLLGTFKADVKIVDNETI-SVDG-KLI 159 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~--~d~~~~ay--LLkyDS~hG~F~g~V~v~~~~~L-~inG-k~I 159 (329)
..+|.|+|.|-+|-.++..|.... +.=+.|-|. .+...+.. |+..+. -|+.+.++-. +.| .+|- -.|
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~G---vg~l~lvD~D~ve~sNL~RQ~l~~~~d-vG~~Ka~~a~---~~l~~~np~v~v 110 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAG---IGRIGIVDFDVVDSSNLQRQVIHGTSW-VGKPKIESAK---NRILEINPYCQV 110 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC---CCEEEEECCCEecccccCcCcccChHH-CCCcHHHHHH---HHHHHHCCCCeE
Confidence 358999999999999999887543 333334443 12222111 222122 1433222111 111 1221 122
Q ss_pred EEEecC-CCCCC-C-CccCCCcEEEcCCCCCCChhhHHHH-HHcCCCEEEEeCCCCCCCCCeEEecc--CccccCCCCCc
Q 020217 160 KVVSNR-DPLQL-P-WAELGIDIVIEGTGVFVDGPGAGKH-IQAGAKKVIITAPAKGADIPTYVVGV--NEKDYDHEVAN 233 (329)
Q Consensus 160 ~V~~~~-~P~~i-d-W~~~GiDiVvesTG~f~~~e~a~~H-l~aGakkVIISAPsk~~DiP~iV~GV--N~~~~~~~~~~ 233 (329)
..+..+ ++++. + + .+.|+||||+..+.++..+... .+.|..-|.-+.-+....+-.|.++- ..+.+-+....
T Consensus 111 ~~~~~~~~~~~~~~~~--~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~~~ 188 (390)
T PRK07411 111 DLYETRLSSENALDIL--APYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPP 188 (390)
T ss_pred EEEecccCHHhHHHHH--hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEECCCCCCChHHhcCCCCC
Confidence 332211 12111 1 2 2689999999999776655433 34565433222222110111121221 11111111000
Q ss_pred eEEcCCchh-------------hhhhhHHHhhhhhcCceEEEEEEEeeccCCCCCCC
Q 020217 234 IVSNASCTT-------------NCLAPFVKVMDEELGIVKGAMTTTHSYTGDQALGC 277 (329)
Q Consensus 234 IISnASCTT-------------n~LaPvlKvL~d~fGI~~g~vTTvHa~T~dQ~l~D 277 (329)
--.-++|.+ -+..-++|+|...-....+.+-++...+++.+.+.
T Consensus 189 ~~~~~~c~~~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~ 245 (390)
T PRK07411 189 PGMVPSCAEGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELK 245 (390)
T ss_pred cccCCCCccCCcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEe
Confidence 001234552 12334567776443355678888888888777666
No 366
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.69 E-value=43 Score=33.87 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=25.4
Q ss_pred CCcEEEcCCCCCCChhhHHHHHHc-CCCEEEEeCCC
Q 020217 176 GIDIVIEGTGVFVDGPGAGKHIQA-GAKKVIITAPA 210 (329)
Q Consensus 176 GiDiVvesTG~f~~~e~a~~Hl~a-GakkVIISAPs 210 (329)
..|++|||||...+.+.+-..++. |. +++-.-+
T Consensus 242 ~~d~~~dCsG~~~~~~aai~a~r~gGt--~vlvg~g 275 (354)
T KOG0024|consen 242 QPDVTFDCSGAEVTIRAAIKATRSGGT--VVLVGMG 275 (354)
T ss_pred CCCeEEEccCchHHHHHHHHHhccCCE--EEEeccC
Confidence 389999999999999888777776 45 5554433
No 367
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=34.56 E-value=46 Score=33.72 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaInd 120 (329)
.+|+|.|.|.||+.+++.|.... . +++.++.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G---~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG---VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC---CCeEEEEeC
Confidence 58999999999999999987652 3 4555554
No 368
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=34.05 E-value=76 Score=27.74 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=23.5
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 89 VaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
|.|.| +|-||+.+++.|.++. -+++++...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g---~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG---HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC---Ccccccccc
Confidence 57889 9999999999999874 356655554
No 369
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=33.94 E-value=76 Score=30.46 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=25.1
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 86 ~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.++|.|-| .|.||+.+++.|.++. .+|+++.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~ 41 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG---YTVHATL 41 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 35899999 8999999999998763 4776653
No 370
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=33.90 E-value=1.3e+02 Score=28.33 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=24.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|.|+|.|.+|..++..+... .+.++++..
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~---G~~vi~~~~ 197 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASAL---GARVIAVDI 197 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCeEEEEeC
Confidence 4799999999999998887654 367776643
No 371
>PRK06988 putative formyltransferase; Provisional
Probab=33.53 E-value=60 Score=31.73 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=24.2
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
|++||++.|.+.+|...++.|.+.. +++++|
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~---~~i~~V 31 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARG---VDVALV 31 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCC---CCEEEE
Confidence 3479999999999999999998753 454443
No 372
>PRK14851 hypothetical protein; Provisional
Probab=33.51 E-value=14 Score=40.18 Aligned_cols=97 Identities=21% Similarity=0.207 Sum_probs=49.0
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC--CChhhhhh-hccccccccccCceEEEecCCeEEECC-eEEEE
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASH-LLKYDSLLGTFKADVKIVDNETISVDG-KLIKV 161 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~--~d~~~~ay-LLkyDS~hG~F~g~V~v~~~~~L~inG-k~I~V 161 (329)
..+|+|.|.|-+|-.++..|.....+.+. |-|. .++..+-- ++-..+.-|+.+.++-. +.-..+|- -.|++
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~---LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~--~~l~~inP~~~I~~ 117 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFH---IADFDQFEPVNVNRQFGARVPSFGRPKLAVMK--EQALSINPFLEITP 117 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEE---EEcCCEecccccccCcCcChhhCCCHHHHHHH--HHHHHhCCCCeEEE
Confidence 35899999999999999988754322232 3332 12222211 11112223554433321 11122342 24555
Q ss_pred EecC-CCCCCCCccCCCcEEEcCCCCC
Q 020217 162 VSNR-DPLQLPWAELGIDIVIEGTGVF 187 (329)
Q Consensus 162 ~~~~-~P~~idW~~~GiDiVvesTG~f 187 (329)
+.+. ++++++---.++|+||||+..|
T Consensus 118 ~~~~i~~~n~~~~l~~~DvVid~~D~~ 144 (679)
T PRK14851 118 FPAGINADNMDAFLDGVDVVLDGLDFF 144 (679)
T ss_pred EecCCChHHHHHHHhCCCEEEECCCCC
Confidence 5433 3333321113899999999865
No 373
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=33.29 E-value=1.3e+02 Score=27.95 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=51.0
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGf-GRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
-+|.|+|- |.+|..+++++..+. ..++++... .+....+.++ |. . .+++.+... .+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~~--~~~~~~~~~~----g~-~----------~v~~~~~~~---~~ 204 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLG---YEVVASTGK--ADAADYLKKL----GA-K----------EVIPREELQ---EE 204 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC---CeEEEEecC--HHHHHHHHHc----CC-C----------EEEcchhHH---HH
Confidence 47899995 999999988886653 567666443 2222222111 11 0 011111100 00
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISA 208 (329)
.-. .+...++|+|+|++|. ...+.+-.++..+..-+.+..
T Consensus 205 ~~~--~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 205 SIK--PLEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred HHH--hhccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEee
Confidence 000 1123478999999997 445556677776554444443
No 374
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=33.29 E-value=85 Score=29.38 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=17.2
Q ss_pred EEEEcC-ChhHHHHHHHHHhC
Q 020217 89 VAINGF-GRIGRNFLRCWHGR 108 (329)
Q Consensus 89 VaInGf-GRIGR~vlR~l~~r 108 (329)
|+|.|. |.+|..++..|...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~ 21 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG 21 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC
Confidence 689998 99999999887754
No 375
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=33.16 E-value=61 Score=29.68 Aligned_cols=31 Identities=29% Similarity=0.602 Sum_probs=23.9
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+|.|-| +|-||+.+++.|.++. ...+|+++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEec
Confidence 578899 8999999999887642 236777664
No 376
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=32.94 E-value=1.2e+02 Score=28.33 Aligned_cols=95 Identities=22% Similarity=0.182 Sum_probs=49.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~-vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
-+|.|+|.|.+|+.+++++..+. .. ++++.. +.+....+-++ |. + ..++........ +
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G---~~~v~~~~~--~~~~~~~~~~~----g~---~--------~~~~~~~~~~~~-~ 219 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNG---ASRVTVAEP--NEEKLELAKKL----GA---T--------ETVDPSREDPEA-Q 219 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEECC--CHHHHHHHHHh----CC---e--------EEecCCCCCHHH-H
Confidence 47899999999999988876642 45 444433 23333333221 11 0 111111000000 0
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVII 206 (329)
... ...++|++|+++|.-...+.+..++..+.+-+.+
T Consensus 220 --~~~--~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 220 --KED--NPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred --HHh--cCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 001 1237899999998544445566777776533333
No 377
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=32.92 E-value=2.3e+02 Score=26.64 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=23.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~-vVaInd 120 (329)
-+|.|+|.|.+|..+++++..+ ... ++++..
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~---G~~~v~~~~~ 192 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKIL---GAKRVIAVDI 192 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEEEcC
Confidence 4799999999999998877654 245 666643
No 378
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=32.77 E-value=1.7e+02 Score=27.10 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=23.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
-+|.|+| .|.+|..+++++... ..+++++.
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~---G~~vi~~~ 177 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLL---GARVVGIA 177 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHc---CCEEEEEe
Confidence 4789999 799999988887654 25666664
No 379
>PRK07326 short chain dehydrogenase; Provisional
Probab=32.65 E-value=73 Score=28.07 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=24.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|.|.| .|.||+.+++.|.++. .+|+++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g---~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG---YKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC---CEEEEee
Confidence 5789999 8999999999998753 4666664
No 380
>PRK08017 oxidoreductase; Provisional
Probab=32.41 E-value=77 Score=28.29 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=23.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|.|.| .|.||+.+++.|.++. .+++++..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g---~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG---YRVLAACR 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 3689999 6999999999998653 46666543
No 381
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=32.40 E-value=2.1e+02 Score=26.89 Aligned_cols=31 Identities=19% Similarity=0.116 Sum_probs=23.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
-+|.|+| -|.||..+++++..+ ..+++++..
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~---G~~Vi~~~~ 171 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLK---GCKVVGAAG 171 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHc---CCEEEEEeC
Confidence 4799999 699999998877654 256666543
No 382
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=32.12 E-value=1.7e+02 Score=26.83 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=23.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|.|+|-|.+|..-++.|.+.. -.|++|.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g---a~VtVvs 39 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG---AQLRVIA 39 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC---CEEEEEc
Confidence 48999999999999999888753 3555554
No 383
>PRK10083 putative oxidoreductase; Provisional
Probab=32.07 E-value=1.6e+02 Score=27.59 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.5
Q ss_pred eeEEEEcCChhHHHHHHHHHh
Q 020217 87 LKVAINGFGRIGRNFLRCWHG 107 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~ 107 (329)
-+|.|+|-|.+|..+++.+..
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~~ 182 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLKG 182 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 479999999999998887653
No 384
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=31.94 E-value=69 Score=34.02 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.6
Q ss_pred cCeeeEEEEc-CChhHHHHHHHHHhC
Q 020217 84 VAKLKVAING-FGRIGRNFLRCWHGR 108 (329)
Q Consensus 84 ~~~vkVaInG-fGRIGR~vlR~l~~r 108 (329)
++.+||-|-| .|.||+.|.+.|.++
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~ 403 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQ 403 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhC
Confidence 3457999999 899999999998765
No 385
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=31.85 E-value=69 Score=33.38 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=24.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
+||+|+|.|.+|-.++-+|.++. .+.+|+++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKC-PDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCCeEEEEE
Confidence 58999999999998887776542 246787774
No 386
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=31.48 E-value=2.1e+02 Score=27.20 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=18.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
-+|.|+|.|.||..+++++..+
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~ 189 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLR 189 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999998877654
No 387
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=31.37 E-value=70 Score=29.27 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=23.2
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
||.|.| .|.||+.+++.|.++. -+++++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g---~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG---RVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC---CEEEEeCC
Confidence 578999 8999999999998753 46665543
No 388
>PRK09291 short chain dehydrogenase; Provisional
Probab=31.19 E-value=82 Score=28.14 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|.|.| .|.||+.+++.|.++. .+++++.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~ 33 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG---HNVIAGV 33 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 3688999 8999999999998753 4666554
No 389
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=31.16 E-value=97 Score=29.89 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.2
Q ss_pred EEEEcCChhHHHHHHHHHhC
Q 020217 89 VAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 89 VaInGfGRIGR~vlR~l~~r 108 (329)
|+|+|.|.||..++-.|..+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~ 20 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK 20 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc
Confidence 58999999999999877765
No 390
>PRK06046 alanine dehydrogenase; Validated
Probab=31.03 E-value=84 Score=30.69 Aligned_cols=34 Identities=29% Similarity=0.214 Sum_probs=27.9
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
..+|+|.|.|.+|+..++.+... .+++.|.|-+.
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~--~~i~~v~v~~r 162 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEV--FDLEEVRVYDR 162 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhh--CCceEEEEECC
Confidence 46899999999999999988643 35788888776
No 391
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=30.86 E-value=68 Score=34.54 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.||+|+|+|.+|..+++.|..... ..+|++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~-~~~V~~~d 35 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGL-AREVVAVD 35 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CCEEEEEE
Confidence 589999999999999999976421 23565554
No 392
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=30.83 E-value=72 Score=33.86 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=27.6
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+++||.|-| .|-||+.+++.|.++. .+.+|+++..
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d~ 40 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNY-PDYKIVVLDK 40 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 446899999 9999999999998752 2468877753
No 393
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=30.33 E-value=74 Score=29.44 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=23.8
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+|.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG---EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC---CEEEEEEe
Confidence 689999 8999999999998763 46666643
No 394
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=30.29 E-value=64 Score=31.74 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=18.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHhC
Q 020217 88 KVAINGF-GRIGRNFLRCWHGR 108 (329)
Q Consensus 88 kVaInGf-GRIGR~vlR~l~~r 108 (329)
||+|.|. |.||..++-.|..+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~ 22 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ 22 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC
Confidence 7999997 99999998877655
No 395
>PLN02240 UDP-glucose 4-epimerase
Probab=30.10 E-value=86 Score=29.67 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=24.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|.|-| .|-||+.+++.|.++. .+|+++.
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~ 36 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLAG---YKVVVID 36 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 5899999 8999999999998753 5777774
No 396
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.99 E-value=62 Score=32.66 Aligned_cols=22 Identities=14% Similarity=0.510 Sum_probs=19.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRK 109 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~ 109 (329)
++|.|.|+|+.|+.++|.|. +.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G 22 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KF 22 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CC
Confidence 47999999999999999998 53
No 397
>PLN02583 cinnamoyl-CoA reductase
Probab=29.97 E-value=88 Score=29.42 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=23.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|.|-| .|.||+.+++.|.++. .+|+++.
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G---~~V~~~~ 37 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRG---YTVHAAV 37 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 4689999 9999999999998763 4666553
No 398
>PRK10537 voltage-gated potassium channel; Provisional
Probab=29.65 E-value=75 Score=32.31 Aligned_cols=30 Identities=20% Similarity=0.121 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
-.|.|.|+|++|+.+++.|.++. .++++|.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g---~~vvVId 270 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRG---QAVTVIV 270 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCC---CCEEEEE
Confidence 46999999999999999987652 5666664
No 399
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=28.81 E-value=84 Score=28.78 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=24.5
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+|-|-| .|-||+.|++.|.++ ..+|+++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~---g~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA---GHDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC---CCeEEEEeC
Confidence 488999 899999999999876 357777764
No 400
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.78 E-value=74 Score=33.05 Aligned_cols=32 Identities=28% Similarity=0.237 Sum_probs=25.0
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
++.+|+|+|.|..|-..+|.|.+. .+++++.-
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~---g~~v~vfE 36 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE---GHEVVVFE 36 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC---CCCceEEE
Confidence 567999999999999999999865 24554443
No 401
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=28.53 E-value=1.2e+02 Score=27.11 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=24.7
Q ss_pred eeEEEEcCChh-HHHHHHHHHhCCCCCceEEEEeCC
Q 020217 87 LKVAINGFGRI-GRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 87 vkVaInGfGRI-GR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
.+|.|.|.|.+ |+.+++.|.++. ..+..+|..
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~r~ 77 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN---ATVTVCHSK 77 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC---CEEEEEECC
Confidence 58999999985 999999998753 356666653
No 402
>PLN02702 L-idonate 5-dehydrogenase
Probab=28.45 E-value=1.1e+02 Score=29.40 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=21.6
Q ss_pred CCcEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 020217 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (329)
Q Consensus 176 GiDiVvesTG~f~~~e~a~~Hl~aGakkVII 206 (329)
++|+|||++|.-.....+-.+++.+.+-|++
T Consensus 254 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 254 GIDVSFDCVGFNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred CCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 6899999999644556666788776643333
No 403
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.20 E-value=99 Score=27.58 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=23.7
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
..|.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g---~~vi~~~ 33 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAG---FDLAIND 33 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 4578889 9999999999998763 4666664
No 404
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.18 E-value=15 Score=37.77 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=20.8
Q ss_pred cCeeeEEEEcCChhHHHHHHHHHhC
Q 020217 84 VAKLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 84 ~~~vkVaInGfGRIGR~vlR~l~~r 108 (329)
+.|.|++|+|-|-|+-.++-+|...
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gL 211 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGL 211 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhc
Confidence 4578999999999998888877654
No 405
>PLN00198 anthocyanidin reductase; Provisional
Probab=28.02 E-value=87 Score=29.72 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=23.8
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 020217 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 86 ~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
..+|.|-| .|-||+.+++.|.++. .+|+++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g---~~V~~~ 39 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG---YAVNTT 39 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC---CEEEEE
Confidence 35899999 9999999999998763 365443
No 406
>PRK15076 alpha-galactosidase; Provisional
Probab=27.86 E-value=54 Score=33.64 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=11.6
Q ss_pred eeEEEEcCChhHH
Q 020217 87 LKVAINGFGRIGR 99 (329)
Q Consensus 87 vkVaInGfGRIGR 99 (329)
+||+|+|-|.+|-
T Consensus 2 ~KIaIIGaGsvg~ 14 (431)
T PRK15076 2 PKITFIGAGSTVF 14 (431)
T ss_pred cEEEEECCCHHHh
Confidence 5899999999983
No 407
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=27.72 E-value=3.5e+02 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=21.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaI 118 (329)
.+|.|.|.|-+|..+++++..+ .. .++++
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~---G~~~v~~~ 196 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRA---GAAEIVAT 196 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEE
Confidence 4788999999999988877654 24 45555
No 408
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=27.66 E-value=20 Score=28.98 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=24.7
Q ss_pred CCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 020217 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (329)
Q Consensus 175 ~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIISAPs 210 (329)
.++|+||||+|.-...+.+-..++.|.+-|++..++
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 489999999996555555556666666556665544
No 409
>PRK07023 short chain dehydrogenase; Provisional
Probab=27.61 E-value=93 Score=27.75 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=22.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
++|.|.| .|.||+.+++.|.++. .+++.+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G---~~v~~~ 31 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG---IAVLGV 31 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC---CEEEEE
Confidence 4789999 8999999999988753 455544
No 410
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=27.39 E-value=1.1e+02 Score=26.74 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=24.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|.|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g---~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG---AKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 4799999 8999999999998763 35665644
No 411
>PLN00203 glutamyl-tRNA reductase
Probab=27.37 E-value=75 Score=33.60 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=25.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
..+|+|+|.|.+|+.+++.|..+.. -+|+++|.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~--~~V~V~nR 298 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC--TKMVVVNR 298 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC--CeEEEEeC
Confidence 3589999999999999999987531 24666665
No 412
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=27.24 E-value=87 Score=32.82 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=24.7
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.||+|+|.|.+|+-++..+... .++|+.++-
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a---G~~V~l~d~ 36 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA---GHQVLLYDI 36 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC---CCeEEEEeC
Confidence 5799999999999999988754 367766643
No 413
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=27.08 E-value=92 Score=30.35 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=27.2
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
|+.+|.|+|-|.-|-.+++.|.++ .++.+|+.|..
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~-~~~~~Itvi~~ 35 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQ-DAHIPITLITA 35 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhh-CcCCCEEEEeC
Confidence 345899999999999999988654 35678877864
No 414
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=26.99 E-value=4.1e+02 Score=25.07 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=22.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaI 118 (329)
-+|.|+|.|.+|..+++++... .. .++++
T Consensus 165 ~~vlV~g~g~vg~~~~~la~~~---G~~~v~~~ 194 (341)
T cd05281 165 KSVLITGCGPIGLMAIAVAKAA---GASLVIAS 194 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEE
Confidence 4788999999999988887654 24 46666
No 415
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=26.86 E-value=1e+02 Score=27.66 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=23.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
++|.|.| .|.||+.+++.|.++. .+|+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEE
Confidence 3688999 8999999999998753 4666553
No 416
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=26.62 E-value=3.3e+02 Score=27.49 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=22.3
Q ss_pred eEEEEcCChhHHH-HHHHHHhCCCCCceEEEEeCC
Q 020217 88 KVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 88 kVaInGfGRIGR~-vlR~l~~r~~~~l~vVaInd~ 121 (329)
+|-++|.|.+|.. ++|.|.++. .+|. +.|.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G---~~v~-~~D~ 31 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRG---YQVS-GSDI 31 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCC---CeEE-EECC
Confidence 4678999999997 999998763 4544 4453
No 417
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=26.31 E-value=5.1e+02 Score=25.15 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=22.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
-+|.|.| .|.||..++.++... ..+++++-
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~---G~~vv~~~ 225 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAA---GANPVAVV 225 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc---CCeEEEEe
Confidence 4799999 599999988877654 35666553
No 418
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=26.22 E-value=89 Score=29.11 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=23.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
.+|.|-| .|-||+.+++.|.++. .+|+++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g---~~V~~~ 34 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG---YTVKAT 34 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC---CEEEEE
Confidence 4799999 9999999999998763 466554
No 419
>PRK04148 hypothetical protein; Provisional
Probab=26.20 E-value=1.2e+02 Score=26.55 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=22.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.||.++|.| -|..+++.|.+. ..+|++|.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~---G~~ViaID 46 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES---GFDVIVID 46 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC---CCEEEEEE
Confidence 589999999 787788888764 36888884
No 420
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=26.05 E-value=2.9e+02 Score=25.79 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=23.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|.|.|-|.+|..+++++.... ...++++..
T Consensus 169 ~~vlI~g~~~vg~~~~~~a~~~g--~~~v~~~~~ 200 (340)
T cd05284 169 STVVVIGVGGLGHIAVQILRALT--PATVIAVDR 200 (340)
T ss_pred CEEEEEcCcHHHHHHHHHHHHhC--CCcEEEEeC
Confidence 47999998789999988876542 256766643
No 421
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=25.88 E-value=85 Score=29.80 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=25.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|.|.|.|.+||.+++.|..... -+|..+|.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~--~~V~v~~R 155 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGV--AEITIVNR 155 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCC--CEEEEEeC
Confidence 579999999999999999986531 35666655
No 422
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=25.52 E-value=98 Score=32.40 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.2
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|+|+|.|.+|+-++..+... .++|+..+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a---G~~V~l~D 37 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA---GHTVLLYD 37 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCeEEEEe
Confidence 5799999999999999988754 36776664
No 423
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=25.37 E-value=5.3e+02 Score=23.65 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=24.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
-+|.|+| .|.||..+++++... ...++++.+.
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~---G~~v~~~~~~ 173 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAAR---GINVINLVRR 173 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHC---CCeEEEEecC
Confidence 4789998 699999999887765 2567666553
No 424
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.37 E-value=81 Score=30.17 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=0.0
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
++|-|.| +|- ||.+++.|.++. .++++.--. +. ....+.-.|..-.+....
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g---~~v~~s~~t------------~~------------~~~~~~~~g~~~v~~g~l 52 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG---IEILVTVTT------------SE------------GKHLYPIHQALTVHTGAL 52 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC---CeEEEEEcc------------CC------------ccccccccCCceEEECCC
Q ss_pred CCCCC--CCccCCCcEEEcCCCCC
Q 020217 166 DPLQL--PWAELGIDIVIEGTGVF 187 (329)
Q Consensus 166 ~P~~i--dW~~~GiDiVvesTG~f 187 (329)
+.+++ -+.+.++|+|||+|..|
T Consensus 53 ~~~~l~~~l~~~~i~~VIDAtHPf 76 (256)
T TIGR00715 53 DPQELREFLKRHSIDILVDATHPF 76 (256)
T ss_pred CHHHHHHHHHhcCCCEEEEcCCHH
No 425
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=25.34 E-value=1.6e+02 Score=27.74 Aligned_cols=31 Identities=16% Similarity=0.024 Sum_probs=22.9
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCc-eEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPL-DVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l-~vVaInd 120 (329)
-+|.|+| .|.+|..+++++..+ .. +++++..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~---G~~~Vi~~~~ 188 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL---GCSRVVGICG 188 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc---CCCEEEEEcC
Confidence 4799999 599999988877654 24 5766643
No 426
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=25.29 E-value=88 Score=30.78 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.0
Q ss_pred eeEEEEcC-ChhHHHHHHHHHhC
Q 020217 87 LKVAINGF-GRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGf-GRIGR~vlR~l~~r 108 (329)
+||+|.|. |.||..++-.|..+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~ 23 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN 23 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC
Confidence 48999997 99999999887654
No 427
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=25.17 E-value=63 Score=32.00 Aligned_cols=37 Identities=35% Similarity=0.509 Sum_probs=27.1
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCC------CCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKD------SPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~------~~l~vVaInd~ 121 (329)
+.++|+|+|.|-|||.++.-+..... --+++|+|.+.
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 34789999999999999976653221 12788888774
No 428
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=25.10 E-value=1.1e+02 Score=30.13 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=24.8
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|+|.|-|..||.++.++... .++++++..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l---G~~v~~~d~ 33 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL---GYKVIVLDP 33 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCEEEEEeC
Confidence 4799999999999999888765 367776643
No 429
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=25.00 E-value=1.2e+02 Score=25.91 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=24.3
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
++.|+|.|..|+.+++.|..+ .++++++=|
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~---g~~vvgfid 30 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS---GWEIVGFLD 30 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCEEEEEEc
Confidence 478999999999999998643 478887755
No 430
>PRK14852 hypothetical protein; Provisional
Probab=24.95 E-value=58 Score=37.26 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=19.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r 108 (329)
..||+|+|.|-+|-.++..|...
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAra 354 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLART 354 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHc
Confidence 35899999999999999988754
No 431
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=24.87 E-value=1e+02 Score=29.35 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRK 109 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~ 109 (329)
.+|.|-| .|-||+.+++.|.++.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g 25 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET 25 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC
Confidence 4789999 9999999999998763
No 432
>PF01232 Mannitol_dh: Mannitol dehydrogenase Rossmann domain; InterPro: IPR013131 Mannitol-1-phosphate 5-dehydrogenase catalyses the NAD-dependent reduction of mannitol-1-phosphate to fructose-6-phosphate [] as part of the phosphoenolpyruvate-dependent phosphotransferase system (PTS). The PTS facilitates the vectorial translocation of metabolisable carbohydrates to form the corresponding sugar phosphates, which are then converted to glycolytic intermediates []. Mannitol 2-dehydrogenase catalyses the NAD-dependent reduction of mannitol to fructose []. Several dehydrogenases have been shown [] to be evolutionary related, including mannitol-1-phosphate 5-dehydrogenase (1.1.1.17 from EC) (gene mtlD), mannitol 2-dehydrogenase (1.1.1.67 from EC) (gene mtlK); mannonate oxidoreductase (1.1.1.57 from EC) (fructuronate reductase) (gene uxuB); Escherichia coli hypothetical proteins ydfI and yeiQ; and yeast hypothetical protein YEL070w. This domain has a Rossmann-type fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1M2W_A 1LJ8_A 3H2Z_A.
Probab=24.57 E-value=94 Score=26.91 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=25.9
Q ss_pred eeEEEEcCChhHHH---HHHHHHhCCCCCceEEEEeCC
Q 020217 87 LKVAINGFGRIGRN---FLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 87 vkVaInGfGRIGR~---vlR~l~~r~~~~l~vVaInd~ 121 (329)
|||.-.|.|.++|- ++..|+++...+..+++|+..
T Consensus 1 m~ivhfG~Gnf~Rgh~a~i~~ll~~~~~~~gi~~V~~~ 38 (151)
T PF01232_consen 1 MKIVHFGAGNFHRGHQAFIDELLNQGGFDWGIVDVNPR 38 (151)
T ss_dssp -EEEEES-SHHHHHTHHCHHHHHCCTTTCEEEEECEHC
T ss_pred CcEEEECCcHHHHHHHHHHHHHHhccCCceEEEEEEec
Confidence 58899999999999 776666665556788888764
No 433
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=24.48 E-value=1.2e+02 Score=26.82 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=24.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|.|-| .|.||+.+++.|.++. ..|+++..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~r 38 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADG---AEVIVVDI 38 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeC
Confidence 4789999 9999999999998763 46666643
No 434
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=24.46 E-value=74 Score=30.55 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.3
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
+||+|.|.|.+|..+...|.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~ 22 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK 22 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC
Confidence 3799999999999999988754
No 435
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=24.45 E-value=88 Score=31.41 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=25.3
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
..+|.|+|.|-+|+++++.|.++.. -++...|.
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~--~~i~v~nR 206 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGY--SRITFCSR 206 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCC--CEEEEEcC
Confidence 3589999999999999999987632 24555554
No 436
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=24.45 E-value=1.1e+02 Score=27.98 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=22.7
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
||.|.| .|-||+.+++.|.++. .+++++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g---~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG---HEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC---CeEEEEe
Confidence 578898 9999999999998753 4666553
No 437
>PRK07454 short chain dehydrogenase; Provisional
Probab=24.39 E-value=1.4e+02 Score=26.54 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=24.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.++.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r 38 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAG---WDLALVAR 38 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeC
Confidence 4688889 8999999999998763 46666543
No 438
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=24.34 E-value=4.6e+02 Score=24.51 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=23.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
-+|.|+|.|.+|..+++++..+ ..+++++.
T Consensus 161 ~~vLI~g~g~vG~~a~~lA~~~---g~~v~~~~ 190 (337)
T cd08261 161 DTVLVVGAGPIGLGVIQVAKAR---GARVIVVD 190 (337)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCeEEEEC
Confidence 4788999999999999888765 35776664
No 439
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=24.23 E-value=99 Score=30.18 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r 108 (329)
+||.|.|.|.||-++.-.|...
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~ 22 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA 22 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC
Confidence 5899999999999998877654
No 440
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=24.23 E-value=1e+02 Score=29.14 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r 108 (329)
+||-|-| .|-||+.+++.|.++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~ 23 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPL 23 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhcc
Confidence 3799999 899999999998765
No 441
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.83 E-value=1.1e+02 Score=30.92 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.8
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r 108 (329)
.++||+|.|.|.-|-.++..|.+.
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc
Confidence 347899999999999999998754
No 442
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=23.81 E-value=2.6e+02 Score=29.06 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=26.7
Q ss_pred cCeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 84 ~~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+.|.+++|+|-|.||-.++.++... +.++.|+--.+
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~ 206 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAAL-GSKVTVVERGD 206 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 4577899999999999999988754 33455544444
No 443
>PRK07236 hypothetical protein; Provisional
Probab=23.65 E-value=1.2e+02 Score=29.60 Aligned_cols=33 Identities=15% Similarity=-0.044 Sum_probs=25.0
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
++.+|.|+|-|..|-.++..|... .++++.+..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~---G~~v~v~E~ 37 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA---GWDVDVFER 37 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC---CCCEEEEec
Confidence 457999999999999888888654 356555543
No 444
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=23.34 E-value=3.3e+02 Score=29.89 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=24.3
Q ss_pred cCeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 84 ~~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.++.+|.|+|-|..|-.++-+|..+ .+++..+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~---Gi~V~V~E 111 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKK---GFDVLVFE 111 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhc---CCeEEEEe
Confidence 4568999999999998888877654 24555453
No 445
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.33 E-value=1.4e+02 Score=26.43 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=24.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+|.|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G---~~V~~~~r 37 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG---ARVVVTDR 37 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 3789999 8999999999998763 46665543
No 446
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=23.30 E-value=1.8e+02 Score=27.52 Aligned_cols=91 Identities=20% Similarity=0.180 Sum_probs=47.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
-+|.|+|.|.+|..+++.+.... . .++++.. ..+...++-++ |. + .+++........
T Consensus 177 ~~vlI~g~g~vg~~~~~~a~~~G---~~~v~~~~~--~~~~~~~~~~~----g~---~--------~~~~~~~~~~~~-- 234 (350)
T cd08240 177 EPVVIIGAGGLGLMALALLKALG---PANIIVVDI--DEAKLEAAKAA----GA---D--------VVVNGSDPDAAK-- 234 (350)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CCeEEEEeC--CHHHHHHHHHh----CC---c--------EEecCCCccHHH--
Confidence 47899999999999888876542 4 3444422 22233222221 10 0 112211111000
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGa 201 (329)
.... .+.. ++|+|||++|.-...+.+..++..+.
T Consensus 235 ~~~~-~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g 268 (350)
T cd08240 235 RIIK-AAGG-GVDAVIDFVNNSATASLAFDILAKGG 268 (350)
T ss_pred HHHH-HhCC-CCcEEEECCCCHHHHHHHHHHhhcCC
Confidence 0000 0123 78999999986445566667777655
No 447
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=23.29 E-value=3.3e+02 Score=25.57 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=22.0
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~-vVaIn 119 (329)
-.|.|.|-|.+|..+++++..+ ... ++++.
T Consensus 170 ~~vlI~g~g~vg~~~~~lak~~---G~~~v~~~~ 200 (345)
T cd08287 170 STVVVVGDGAVGLCAVLAAKRL---GAERIIAMS 200 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEEEC
Confidence 4788899999999988877654 244 55554
No 448
>PRK08163 salicylate hydroxylase; Provisional
Probab=23.25 E-value=1.2e+02 Score=29.31 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=23.8
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
++.+|+|+|-|..|-.++..|... ++++..+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~---g~~v~v~E 34 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ---GIKVKLLE 34 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC---CCcEEEEe
Confidence 457999999999999888877543 25555553
No 449
>PRK08618 ornithine cyclodeaminase; Validated
Probab=23.23 E-value=1.4e+02 Score=29.08 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=24.6
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
..+|+|.|.|.+||..++++... .+++-|.|-+.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~--~~~~~v~v~~r 160 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAV--RDIERVRVYSR 160 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc--CCccEEEEECC
Confidence 45899999999999999887643 23455555554
No 450
>PRK12827 short chain dehydrogenase; Provisional
Probab=23.21 E-value=1.4e+02 Score=26.31 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=23.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
++|.|.| .|-||+.+++.|.++. .+++.+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g---~~v~~~~ 37 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADG---ADVIVLD 37 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEc
Confidence 5789999 8999999999998763 4665553
No 451
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=23.20 E-value=1.2e+02 Score=28.96 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=24.1
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+|-|-| .|-||+.+++.|.++. .+|+++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG---YEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC---CEEEEEec
Confidence 688889 8999999999998763 57776643
No 452
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=23.01 E-value=1.3e+02 Score=30.45 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=25.3
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhC----CCCCceEEEEeC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGR----KDSPLDVVVVND 120 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r----~~~~l~vVaInd 120 (329)
++++|||+|-|-||-.-+=++.+. ..+..++-++.|
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 457999999999998766555542 234466666766
No 453
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=22.92 E-value=39 Score=34.39 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.8
Q ss_pred cCeeeEEEEc-CChhHHHHHHHHHhC
Q 020217 84 VAKLKVAING-FGRIGRNFLRCWHGR 108 (329)
Q Consensus 84 ~~~vkVaInG-fGRIGR~vlR~l~~r 108 (329)
++..++-||| .|-.|+++++.|..+
T Consensus 4 e~e~d~iiYGAtGy~G~lvae~l~~~ 29 (382)
T COG3268 4 EREYDIIIYGATGYAGGLVAEYLARE 29 (382)
T ss_pred CcceeEEEEccccchhHHHHHHHHHc
Confidence 4667899999 999999999998765
No 454
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=22.74 E-value=2.6e+02 Score=26.20 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=23.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
-+|.|+| .|.+|..+++++... ..+++++.+
T Consensus 164 ~~vlI~g~~g~ig~~~~~~a~~~---G~~v~~~~~ 195 (350)
T cd08248 164 KRVLILGGSGGVGTFAIQLLKAW---GAHVTTTCS 195 (350)
T ss_pred CEEEEECCCChHHHHHHHHHHHC---CCeEEEEeC
Confidence 4789999 799999998887654 256666654
No 455
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=22.59 E-value=96 Score=30.12 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.8
Q ss_pred EEcCChhHHHHHHHHHhCC
Q 020217 91 INGFGRIGRNFLRCWHGRK 109 (329)
Q Consensus 91 InGfGRIGR~vlR~l~~r~ 109 (329)
|+|.|.||-.++-.|..+.
T Consensus 1 iIGaG~VG~~~a~~l~~~~ 19 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQG 19 (299)
T ss_pred CCCcCHHHHHHHHHHHhcC
Confidence 6799999999998887653
No 456
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=22.57 E-value=1.4e+02 Score=29.29 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=26.0
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
..+|+|+|-|-+|-.++..|..+. +..+|+.+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~-~g~~V~llE~ 35 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERY-PGARIAVLEK 35 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhC-CCCeEEEEeC
Confidence 368999999999999998887652 2456666654
No 457
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=22.42 E-value=2.4e+02 Score=29.09 Aligned_cols=80 Identities=11% Similarity=0.060 Sum_probs=0.0
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~P 167 (329)
+|+|+|.|..|-.++..|..... +|..+......+....+.. .+..+.++.....+......
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~a~---~V~l~~r~~~~~~~~~~~~---------------~~~~v~~~~~I~~~~~~g~V 267 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKVAK---EVHIASRASESDTYEKLPV---------------PQNNLWMHSEIDTAHEDGSI 267 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHhCC---eEEEEEeeccccccccCcC---------------CCCceEECCcccceecCCeE
Q ss_pred CCCCCccCCCcEEEcCCC
Q 020217 168 LQLPWAELGIDIVIEGTG 185 (329)
Q Consensus 168 ~~idW~~~GiDiVvesTG 185 (329)
.--|=+...+|.||.|||
T Consensus 268 ~f~DG~~~~~D~Ii~~TG 285 (461)
T PLN02172 268 VFKNGKVVYADTIVHCTG 285 (461)
T ss_pred EECCCCCccCCEEEECCc
No 458
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=22.39 E-value=1.4e+02 Score=27.32 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=22.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
.+|+|.|||.-|+..+..|-+. .++|+.-...
T Consensus 5 k~IAViGyGsQG~a~AlNLrDS---G~~V~Vglr~ 36 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDS---GVNVIVGLRE 36 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHC---C-EEEEEE-T
T ss_pred CEEEEECCChHHHHHHHHHHhC---CCCEEEEecC
Confidence 4899999999999988888654 4776654443
No 459
>PRK07577 short chain dehydrogenase; Provisional
Probab=22.28 E-value=1.4e+02 Score=26.18 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=23.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G---~~v~~~~ 34 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLG---HQVIGIA 34 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 3688999 8999999999998753 4666553
No 460
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=22.21 E-value=99 Score=30.83 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.7
Q ss_pred eEEEEcCChhHHHHHHHHHhC
Q 020217 88 KVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r 108 (329)
||+|.|.|.-|..++..|...
T Consensus 1 kI~VIGaG~wGtALA~~la~n 21 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN 21 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc
Confidence 689999999999999988753
No 461
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=22.19 E-value=5.1e+02 Score=25.18 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=22.1
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCc-eEEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l-~vVaI 118 (329)
-.|.|.|.|.+|..+++++..+. . .++++
T Consensus 205 ~~VlV~g~g~vG~~ai~lA~~~G---~~~vi~~ 234 (384)
T cd08265 205 AYVVVYGAGPIGLAAIALAKAAG---ASKVIAF 234 (384)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEE
Confidence 47899999999999888877652 4 45555
No 462
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=22.13 E-value=3.8e+02 Score=25.34 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=52.3
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
-+|.|+| .|.+|..+++++.... ..++++... +...++-+ +|. ...+. .... .. . +
T Consensus 156 ~~vlI~ga~g~vg~~~~~~a~~~G---~~v~~~~~~---~~~~~~~~----~g~-~~v~~--------~~~~--~~-~-~ 212 (339)
T cd08249 156 KPVLIWGGSSSVGTLAIQLAKLAG---YKVITTASP---KNFDLVKS----LGA-DAVFD--------YHDP--DV-V-E 212 (339)
T ss_pred CEEEEEcChhHHHHHHHHHHHHcC---CeEEEEECc---ccHHHHHh----cCC-CEEEE--------CCCc--hH-H-H
Confidence 4799999 6999999988887653 466665432 33333311 121 10111 0000 00 0 0
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHc--CCCEEEEeC
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA--GAKKVIITA 208 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~a--GakkVIISA 208 (329)
...++ ...++|+|+|++|.......+..++.. |.+-|.+..
T Consensus 213 ~l~~~--~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~ 255 (339)
T cd08249 213 DIRAA--TGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLP 255 (339)
T ss_pred HHHHh--cCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecC
Confidence 00111 123789999999974455666778877 664444443
No 463
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=22.10 E-value=2.6e+02 Score=25.95 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=50.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~ 165 (329)
-.|.|+| .|.+|..+++++.... ..+++++... .+...++.+ .|. + ..++.+. .. . +
T Consensus 151 ~~vlV~g~~g~vg~~~~~~a~~~G--~~~v~~~~~~--~~~~~~~~~----~g~---~--------~~~~~~~-~~-~-~ 208 (336)
T cd08252 151 KTLLIIGGAGGVGSIAIQLAKQLT--GLTVIATASR--PESIAWVKE----LGA---D--------HVINHHQ-DL-A-E 208 (336)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcC--CcEEEEEcCC--hhhHHHHHh----cCC---c--------EEEeCCc-cH-H-H
Confidence 4799999 7999999988876542 2577666432 222222211 111 0 0112110 00 0 0
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aGakkVIIS 207 (329)
...... ..++|+++|++|.-...+.+-.++..+.+-+.++
T Consensus 209 ~i~~~~--~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 209 QLEALG--IEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred HHHhhC--CCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEec
Confidence 000111 2379999999986444555667777665444443
No 464
>PLN02858 fructose-bisphosphate aldolase
Probab=22.04 E-value=1.1e+02 Score=36.30 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=25.7
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
..+||++|+|.+|..+++.|... ..++.+.|-
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~---G~~V~v~dr 355 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS---NFSVCGYDV 355 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC---CCEEEEEeC
Confidence 36899999999999999998864 357766653
No 465
>PRK12320 hypothetical protein; Provisional
Probab=22.02 E-value=1.2e+02 Score=33.31 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=25.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
|||.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 3799999 9999999999998753 57776653
No 466
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=21.90 E-value=1.1e+02 Score=27.82 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=22.2
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 89 VaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
|-|-| .|.||+.+++.|.++. .+|+++..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEeC
Confidence 35677 8999999999998753 57766654
No 467
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=21.81 E-value=1.3e+02 Score=32.26 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=26.5
Q ss_pred eeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.+||.|-| .|-||+.|++.|.++. ..+|+++..
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~--g~~V~~l~r 348 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDD--NYEVYGLDI 348 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC--CcEEEEEeC
Confidence 36899999 8999999999998642 368877754
No 468
>PLN02650 dihydroflavonol-4-reductase
Probab=21.65 E-value=1.4e+02 Score=28.63 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=23.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
.+|.|-| .|.||+.+++.|.++. .+|+++
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~ 35 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERG---YTVRAT 35 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCC---CEEEEE
Confidence 4799999 8999999999998763 466544
No 469
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=21.64 E-value=1.9e+02 Score=27.08 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=23.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
.+|.|-| .|-||+.+++.|.++. .+|+++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~ 35 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG---YTVKAT 35 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 4799999 9999999999998763 466643
No 470
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.54 E-value=1.6e+02 Score=25.92 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=23.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
.+|.|.| .|.||+.+++.|.++. .+++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g---~~v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEG---AKVVIA 35 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 4789999 8999999999887652 566665
No 471
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=21.42 E-value=1.3e+02 Score=29.28 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=71.9
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~ 166 (329)
+||+|+|.|.+|..++-++..+.. .+++.+.-..++... .. +|-.|.. .. .. .++ .|+. ..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~--~~VvlvDi~~~l~~g-~a--~d~~~~~---~~---~~----~~~-~i~~--t~d 63 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKEL--ADLVLLDVVEGIPQG-KA--LDMYEAS---PV---GG----FDT-KVTG--TNN 63 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCC--CeEEEEeCCCChhHH-HH--Hhhhhhh---hc---cC----CCc-EEEe--cCC
Confidence 489999999999999988876531 154444322232221 11 1221111 00 00 111 2222 233
Q ss_pred CCCCCCccCCCcEEEcCCCCCCCh------------hhHHHH---H-Hc--CCCEEEEeCCCCCCCCCe-EEeccCcccc
Q 020217 167 PLQLPWAELGIDIVIEGTGVFVDG------------PGAGKH---I-QA--GAKKVIITAPAKGADIPT-YVVGVNEKDY 227 (329)
Q Consensus 167 P~~idW~~~GiDiVvesTG~f~~~------------e~a~~H---l-~a--GakkVIISAPsk~~DiP~-iV~GVN~~~~ 227 (329)
.+++ .+.|+||-+.|.-... +..... + +. .++=+++|+|. |+-+ +++-. ..+
T Consensus 64 ~~~~----~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~--sg~ 134 (305)
T TIGR01763 64 YADT----ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQK--SGF 134 (305)
T ss_pred HHHh----CCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHH--HCc
Confidence 3333 3789999999964432 111111 1 11 23223446664 3321 12111 113
Q ss_pred CCCCCceEEcCCchhhhhhhHHHhhhhhcCceEEE
Q 020217 228 DHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGA 262 (329)
Q Consensus 228 ~~~~~~IISnASCTTn~LaPvlKvL~d~fGI~~g~ 262 (329)
.+ .++|.- ||.---+.+-+.|.+++|+..-.
T Consensus 135 ~~--~rviG~--g~~lds~R~~~~la~~l~v~~~~ 165 (305)
T TIGR01763 135 PK--ERVIGQ--AGVLDSARFRTFIAMELGVSVQD 165 (305)
T ss_pred CH--HHEEEe--ccchHHHHHHHHHHHHhCcCHHH
Confidence 22 466654 66666668888899999987433
No 472
>PRK12829 short chain dehydrogenase; Provisional
Probab=21.38 E-value=1.5e+02 Score=26.46 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=23.8
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|.|.| .|.||+.+++.|.++. .+|+.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g---~~V~~~~ 42 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAG---ARVHVCD 42 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 5799999 9999999999998763 4555554
No 473
>PTZ00325 malate dehydrogenase; Provisional
Probab=21.34 E-value=96 Score=30.67 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=45.9
Q ss_pred CCcEEEcCCCCCCCh-----hhHH-----------HHHHcCCCEEEE--eCCCCCCCCCeEEec---cCccccCCCCCce
Q 020217 176 GIDIVIEGTGVFVDG-----PGAG-----------KHIQAGAKKVII--TAPAKGADIPTYVVG---VNEKDYDHEVANI 234 (329)
Q Consensus 176 GiDiVvesTG~f~~~-----e~a~-----------~Hl~aGakkVII--SAPsk~~DiP~iV~G---VN~~~~~~~~~~I 234 (329)
|.|+||-+.|.-... +-+. .-.+.|.+++|+ |+|- |+=+.+.. -....+.+ +++
T Consensus 76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv---dv~~~~~~~~~~~~sg~p~--~~v 150 (321)
T PTZ00325 76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV---NSTVPIAAETLKKAGVYDP--RKL 150 (321)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHhhhhhccCCCh--hhe
Confidence 889999998885441 1111 222358888766 4443 22111111 01122322 678
Q ss_pred EEcCCchhhhhhhHHHhhhhhcCceEEEE
Q 020217 235 VSNASCTTNCLAPFVKVMDEELGIVKGAM 263 (329)
Q Consensus 235 ISnASCTTn~LaPvlKvL~d~fGI~~g~v 263 (329)
+... +-=-+.+-..|-+++|+..-.|
T Consensus 151 iG~g---~LDs~R~r~~la~~l~v~~~~V 176 (321)
T PTZ00325 151 FGVT---TLDVVRARKFVAEALGMNPYDV 176 (321)
T ss_pred eech---hHHHHHHHHHHHHHhCcChhhe
Confidence 8773 3667889999999999875443
No 474
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=21.24 E-value=1.4e+02 Score=29.30 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=24.0
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
..+|.|+|-|..|-.++..|..+ .++++.+..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~---G~~v~v~E~ 33 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA---GIDSVVLER 33 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc---CCCEEEEEc
Confidence 46899999999999888777543 356666654
No 475
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=21.17 E-value=4.6e+02 Score=25.14 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=25.6
Q ss_pred eEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 88 kVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
+|.|+|-|.-|-.+++.|..+..++.+|+.|...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~ 34 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPS 34 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCC
Confidence 5899999999988888775432346888888653
No 476
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=21.15 E-value=2.1e+02 Score=23.66 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=23.0
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
.|.|.| .+.||+.++|.|.++. .-.++.+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g--~~~v~~~~r 33 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRG--ARVVILTSR 33 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--TEEEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcC--ceEEEEeee
Confidence 477899 9999999999999872 234444543
No 477
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=20.99 E-value=1.6e+02 Score=26.21 Aligned_cols=31 Identities=26% Similarity=0.167 Sum_probs=23.5
Q ss_pred CeeeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 020217 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 85 ~~vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
|+.+|.|.| .|-||+.+++.|.++. .+++.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g---~~v~~~ 32 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG---WSVGIN 32 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC---CEEEEE
Confidence 345799999 8999999999998753 455443
No 478
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=20.95 E-value=85 Score=27.21 Aligned_cols=40 Identities=25% Similarity=0.537 Sum_probs=27.8
Q ss_pred CCeEEECCeEEEEEecCCCCC---CCCccCCCcEEEcC-C--CCCCCh
Q 020217 149 NETISVDGKLIKVVSNRDPLQ---LPWAELGIDIVIEG-T--GVFVDG 190 (329)
Q Consensus 149 ~~~L~inGk~I~V~~~~~P~~---idW~~~GiDiVves-T--G~f~~~ 190 (329)
-++|.++++..+.+.++++++ |||. .||+|.-+ . |.|+.+
T Consensus 24 yGkimiGDkaFEFyn~~n~~dyIQIPW~--eI~~V~a~V~fkgk~I~R 69 (118)
T PF06115_consen 24 YGKIMIGDKAFEFYNDRNVEDYIQIPWE--EIDYVIASVSFKGKWIPR 69 (118)
T ss_pred cCeEEEcccceEeecCCChhhcEEeChh--heeEEEEEEEECCCEEee
Confidence 356778888888888888765 8998 67865433 2 555444
No 479
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=20.95 E-value=1.7e+02 Score=25.77 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=22.6
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEE
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
.+|.|.| .|.||+.+++.|.++. ..++.+
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g---~~vi~~ 32 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG---YRVIAT 32 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC---CEEEEE
Confidence 3678888 9999999999998653 466555
No 480
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=20.94 E-value=1.6e+02 Score=28.80 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=24.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
++|+|+|-|-+|-..+..|..+ ..+|+++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~---g~~V~vle~ 31 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA---GHEVTVIDR 31 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCEEEEEeC
Confidence 4899999999999998877654 357777755
No 481
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=20.75 E-value=1.7e+02 Score=30.34 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=29.7
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~ 121 (329)
++.+|.|+|-|-||-.+++.|.+.. +.++|..|.+.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~-p~~~V~llEk~ 37 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYE-PDLSVALLEKE 37 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhC-CCceEEEEEcc
Confidence 4579999999999999999998764 55788888664
No 482
>PRK09135 pteridine reductase; Provisional
Probab=20.71 E-value=1.7e+02 Score=25.74 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=24.1
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|.|-| .|.||+.+++.|.++. .+++.+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g---~~v~~~~ 37 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAG---YRVAIHY 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEc
Confidence 4789999 9999999999998753 5666664
No 483
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=20.70 E-value=2.7e+02 Score=28.67 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=26.5
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
++.||.|.|-|--|-.+++-|.... ++.+|+.|+.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~ 36 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDR 36 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeC
Confidence 4568999999988988888876543 2577777765
No 484
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=20.59 E-value=4.6e+02 Score=24.73 Aligned_cols=29 Identities=28% Similarity=0.133 Sum_probs=21.6
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCce-EEEE
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVV 118 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~-vVaI 118 (329)
.+|.|.|.|.+|..+++++-.. ... ++++
T Consensus 164 ~~vlI~g~g~vG~~a~~lak~~---G~~~v~~~ 193 (343)
T cd05285 164 DTVLVFGAGPIGLLTAAVAKAF---GATKVVVT 193 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEE
Confidence 4789999999999988887654 244 5545
No 485
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.57 E-value=35 Score=35.36 Aligned_cols=73 Identities=19% Similarity=0.156 Sum_probs=44.8
Q ss_pred ccccccCceEEEecCCeEEECCeEEEEEecCCCCCCCCc----cCCCcEEEcC---CCC--CCChhh---HHHHHHcCCC
Q 020217 135 SLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWA----ELGIDIVIEG---TGV--FVDGPG---AGKHIQAGAK 202 (329)
Q Consensus 135 S~hG~F~g~V~v~~~~~L~inGk~I~V~~~~~P~~idW~----~~GiDiVves---TG~--f~~~e~---a~~Hl~aGak 202 (329)
.|||.|...-- ++..|.+-+.++.+ ...+.+-|. -.-+|+||-+ ||. -.+++. ++..+++|||
T Consensus 279 ATHg~f~s~~p--~~S~l~~~~~~~~~---~~~~~~~~~~~~~~~~vdLvVLSACqTa~g~gd~~a~lGLag~a~~aGa~ 353 (420)
T COG4995 279 ATHGQFSSGNP--EDSFLLLWDGPINV---TELDILLRNRNNNLLPVELVVLSACQTALGEGDGRAYLGLAGGAVYAGAK 353 (420)
T ss_pred eccccccCCCc--ccceeeecCCCCcc---cHHHHHHHhcccCCCCeeeEEEecchhccCCCCChhhhhHHHHHHHhchh
Confidence 58999985322 34556665555444 223345555 4578988876 344 444443 3578889999
Q ss_pred EEEEeCCCCC
Q 020217 203 KVIITAPAKG 212 (329)
Q Consensus 203 kVIISAPsk~ 212 (329)
.+|-|=.+-+
T Consensus 354 s~laSLW~Vd 363 (420)
T COG4995 354 SALASLWSVD 363 (420)
T ss_pred hhhheeeeeC
Confidence 9887766543
No 486
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=20.47 E-value=1.1e+02 Score=31.82 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=23.1
Q ss_pred CeeeEEEEcCChhHHHHHHHHHhCCCCCceEEEE
Q 020217 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (329)
Q Consensus 85 ~~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaI 118 (329)
+..+|+|+|+|-||--++-++..+ .++++++
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~---G~~ViG~ 38 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASA---GFKVIGV 38 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHc---CCceEeE
Confidence 447999999999998877665543 3577666
No 487
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=20.44 E-value=1.8e+02 Score=25.62 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=23.2
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|.|.| .|.||+.+++.|..+. -+++.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~~ 59 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG---ARVVLVG 59 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEc
Confidence 5899999 7999999999887642 3555554
No 488
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.29 E-value=2.2e+02 Score=29.09 Aligned_cols=98 Identities=19% Similarity=0.201 Sum_probs=50.4
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEE-EEecC
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK-VVSNR 165 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd~~d~~~~ayLLkyDS~hG~F~g~V~v~~~~~L~inGk~I~-V~~~~ 165 (329)
-.|||.|.|.+|-.++.-.-.+. --+|++|. . +.++.. +... |..+- .+|-+... -+++.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~G--AsrIIgvD-i-N~~Kf~----~ak~---fGaTe--------~iNp~d~~~~i~ev 254 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAG--ASRIIGVD-I-NPDKFE----KAKE---FGATE--------FINPKDLKKPIQEV 254 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcC--cccEEEEe-c-CHHHHH----HHHh---cCcce--------ecChhhccccHHHH
Confidence 57999999999988876554432 24777772 2 222222 1111 11111 12222000 00110
Q ss_pred CCCCCCCccCCCcEEEcCCCCCCChhhHHHHHHcC-CCEEEE
Q 020217 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAG-AKKVII 206 (329)
Q Consensus 166 ~P~~idW~~~GiDiVvesTG~f~~~e~a~~Hl~aG-akkVII 206 (329)
-++-++-|+||-+||+|.-..+..+-..-..| =+-|+|
T Consensus 255 ---i~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 255 ---IIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred ---HHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEE
Confidence 02234569999999999876665443333334 233555
No 489
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=20.25 E-value=5.7e+02 Score=24.00 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=22.5
Q ss_pred eeEEEEcCChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
-+|.|+|.|.+|..+++++..+. ...++++.
T Consensus 168 ~~vlI~g~g~~g~~~~~~a~~~G--~~~v~~~~ 198 (345)
T cd08286 168 DTVAIVGAGPVGLAALLTAQLYS--PSKIIMVD 198 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CCeEEEEc
Confidence 47889999999999888776542 24566653
No 490
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=20.23 E-value=1e+02 Score=27.32 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.5
Q ss_pred eeEEEEc-CChhHHHHHHHHHhC
Q 020217 87 LKVAING-FGRIGRNFLRCWHGR 108 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r 108 (329)
++|.|.| .|-||+.+++.|.++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~ 23 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLER 23 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHh
Confidence 3789999 999999999999875
No 491
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=20.17 E-value=1.5e+02 Score=27.61 Aligned_cols=29 Identities=24% Similarity=0.537 Sum_probs=21.5
Q ss_pred EEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 89 VaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
|-|-| .|-||+.+++.|.++. .++|++-+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g---~~~v~~~~ 31 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG---ITDILVVD 31 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC---CceEEEec
Confidence 56888 9999999999998753 45555433
No 492
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=20.12 E-value=1.3e+02 Score=27.49 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.0
Q ss_pred eeeEEEEcCChhHHHHHHHHHhC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGR 108 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r 108 (329)
..||+|.|.|.+|..++..|...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~ 43 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA 43 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc
Confidence 45899999999999999988754
No 493
>PRK08177 short chain dehydrogenase; Provisional
Probab=20.11 E-value=1.7e+02 Score=25.85 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=23.4
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
+|.|.| .|-||+.+++.|.++. .+|+++..
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r 33 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERG---WQVTATVR 33 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCC---CEEEEEeC
Confidence 588999 9999999999998653 46666543
No 494
>PRK08267 short chain dehydrogenase; Provisional
Probab=20.11 E-value=1.7e+02 Score=26.33 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=23.1
Q ss_pred eEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 88 kVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
++.|.| .|.||+.+++.|.++. .+|+.+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 32 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG---WRVGAYD 32 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC---CeEEEEe
Confidence 688999 9999999999998753 4666554
No 495
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=20.08 E-value=5.8e+02 Score=24.11 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=22.4
Q ss_pred eeeEEEEcCChhHHHHHHHHHhCCCCCceEEEEeC
Q 020217 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (329)
Q Consensus 86 ~vkVaInGfGRIGR~vlR~l~~r~~~~l~vVaInd 120 (329)
..+|.|+|-|.|+..=++.|.+.. -.|.+|..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g---A~VtVVap 56 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG---CYVYILSK 56 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEEcC
Confidence 358999999999987677776642 24444543
No 496
>PRK12828 short chain dehydrogenase; Provisional
Probab=20.06 E-value=1.7e+02 Score=25.46 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=23.4
Q ss_pred eeEEEEc-CChhHHHHHHHHHhCCCCCceEEEEe
Q 020217 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (329)
Q Consensus 87 vkVaInG-fGRIGR~vlR~l~~r~~~~l~vVaIn 119 (329)
.+|.|-| .|.||+.+++.|.++. .+++.+.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G---~~v~~~~ 38 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARG---ARVALIG 38 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCC---CeEEEEe
Confidence 4689999 8999999999988753 4665553
Done!