RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020217
(329 letters)
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 352 bits (907), Expect = e-122
Identities = 114/190 (60%), Positives = 147/190 (77%), Gaps = 1/190 (0%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
++VAINGFGRIGRNFLRCW GR+++ L+VV +N++ + A+HLL+YDS+LG F AD+
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS 61
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
D +I+V+GK +K+V +R+PL LPW E ID+VIE TGVFV GA KHIQAGAKKV+
Sbjct: 62 -YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP KG + TYV+GVN+ +Y HE ++SNASCTTNCLAP KV+ + GI+KG MTT
Sbjct: 121 ITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTT 180
Query: 266 THSYTGDQAL 275
THSYT DQ +
Sbjct: 181 THSYTLDQRI 190
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 353 bits (909), Expect = e-121
Identities = 113/190 (59%), Positives = 146/190 (76%), Gaps = 1/190 (0%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
++VAINGFGRIGRNFLRCW GR+++ L+VV +N++ + A+HLL+YDS+LG F AD+
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS 61
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
D +I+V+GK +K+V +R+PL LPW E ID+VIE TGVFV GA KHIQAGAKKV+
Sbjct: 62 -YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP K + TYV+GVN+ +Y HE ++SNASCTTNCLAP KV+ + GI+KG MTT
Sbjct: 121 ITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTT 180
Query: 266 THSYTGDQAL 275
THSYT DQ +
Sbjct: 181 THSYTLDQRI 190
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 348 bits (896), Expect = e-120
Identities = 147/190 (77%), Positives = 166/190 (87%), Gaps = 2/190 (1%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+ ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD GAGKH+QAGAKKV+
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP KG PTYVVGVNE+ Y H I+SNASCTTNCLAPFVKV+D++ GI+KG MTT
Sbjct: 121 ITAPGKGDI-PTYVVGVNEEGYTHA-DTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 266 THSYTGDQAL 275
THSYTGDQ L
Sbjct: 179 THSYTGDQRL 188
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 338 bits (869), Expect = e-116
Identities = 94/190 (49%), Positives = 126/190 (66%), Gaps = 3/190 (1%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
++VAINGFGRIGRN LR + + VV +ND G V+ +HLL+YDS+ G F +V+
Sbjct: 2 AVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVE 61
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
V +TI V IKV + R+P +LPW E +DI +E TG+F A H++AGAK+VI
Sbjct: 62 -VAGDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVI 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
++APA GAD+ T V GVN + ++SNASCTTNCLAP +V+++ +GI KG MTT
Sbjct: 121 VSAPADGADL-TVVYGVNNDKLTKD-HLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTT 178
Query: 266 THSYTGDQAL 275
HSYTGDQ
Sbjct: 179 IHSYTGDQPT 188
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 337 bits (868), Expect = e-116
Identities = 94/193 (48%), Positives = 126/193 (65%), Gaps = 4/193 (2%)
Query: 83 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKA 142
+ A +VAINGFGRIGR R ++V +N S + +HL+KYD++ G F
Sbjct: 1 SNAMTRVAINGFGRIGRMVFRQAIKESA--FEIVAINASYPSETLAHLIKYDTVHGKFDG 58
Query: 143 DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202
V+ + + VDGK+I++++NRDP +LPW +LG+++VIE TG F A H++AGAK
Sbjct: 59 TVE-AFEDHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAK 117
Query: 203 KVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGA 262
KVI+TAP K D+ T VVGVNE D ++SNASCTTNCLAP VKV+DE+ GI G
Sbjct: 118 KVILTAPGKNEDV-TIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGL 176
Query: 263 MTTTHSYTGDQAL 275
MTT H+YT DQ
Sbjct: 177 MTTVHAYTNDQKN 189
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 337 bits (867), Expect = e-116
Identities = 101/188 (53%), Positives = 125/188 (66%), Gaps = 3/188 (1%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
+VAINGFGRIGR R + RK+ ++VV +ND K +HLLKYDS+ F V+
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE-Y 60
Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
++ VDGK IKV + DP +LPW +LG+D VIE TGVF + A H+QAGAKKVIIT
Sbjct: 61 TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120
Query: 208 APAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTH 267
APAKG DI T V+G NE E I+S ASCTTN +AP VKV+ E+ GIV G +TT H
Sbjct: 121 APAKGEDI-TVVIGCNEDQLKPE-HTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVH 178
Query: 268 SYTGDQAL 275
SYT DQ +
Sbjct: 179 SYTNDQRV 186
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 335 bits (862), Expect = e-115
Identities = 107/190 (56%), Positives = 138/190 (72%), Gaps = 4/190 (2%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
+KV INGFGRIGR+F R GR++ +++V +ND K+ +HLLKYDS+ G FK V+
Sbjct: 2 AIKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVE 59
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+++I VDGK IKV + +DP Q+PW +LG+D+VIE TGVF D A KH+Q GAKKVI
Sbjct: 60 -AKDDSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVI 118
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAPAK D T V+GVNE+ Y+ + NI+SNASCTTNCLAP VKV++E G+ KG M T
Sbjct: 119 ITAPAKNPD-ITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVT 177
Query: 266 THSYTGDQAL 275
H+YT DQ L
Sbjct: 178 VHAYTNDQRL 187
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 335 bits (861), Expect = e-115
Identities = 101/189 (53%), Positives = 127/189 (67%), Gaps = 4/189 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGRN R D ++VV VND +HLLKYDS+ G A+V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPD--IEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS- 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
V+ + V+GK I V + RDP L W E+G+DIV+E TG F A KH++AGAKKVII
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APAK D T V+GVN+ YD + +++SNASCTTNCLAPF KV+ E+ GIV+G MTT
Sbjct: 119 SAPAKNED-ITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTV 177
Query: 267 HSYTGDQAL 275
HSYT DQ +
Sbjct: 178 HSYTNDQRI 186
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 334 bits (858), Expect = e-114
Identities = 99/189 (52%), Positives = 127/189 (67%), Gaps = 5/189 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R H R ++V ++ND K +HLLKYDS+ F +V
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA- 56
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D++ + VDGK I+ + +DP ++PWAE G+ +VIE TGVF D A H++ GAKKVII
Sbjct: 57 YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
TAPAKG DI T V+GVN + YD +I+SNASCTTN LAP +KV++E G+ K MTT
Sbjct: 117 TAPAKGEDI-TIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTV 175
Query: 267 HSYTGDQAL 275
HSYT DQ L
Sbjct: 176 HSYTNDQRL 184
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 327 bits (841), Expect = e-112
Identities = 78/191 (40%), Positives = 111/191 (58%), Gaps = 3/191 (1%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGR-KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
++VAINGFGRIGRN +R + + + + VV +N+ +HLLKYD+ G F +V
Sbjct: 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 61
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
+ + + + V I+V+ R LPW ELG+D+V++ TGV+ HI AGAKKV
Sbjct: 62 R-QERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
+ + P T V GVN+ E IVSNASCTTNC+ P +K++D+ GI G +T
Sbjct: 121 LFSHPGSNDLDATVVYGVNQDQLRAE-HRIVSNASCTTNCIIPVIKLLDDAYGIESGTVT 179
Query: 265 TTHSYTGDQAL 275
T HS DQ +
Sbjct: 180 TIHSAMHDQQV 190
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 327 bits (840), Expect = e-112
Identities = 89/190 (46%), Positives = 120/190 (63%), Gaps = 3/190 (1%)
Query: 87 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
++VAING+GRIGRN LR + G K +++V +ND G K +HL +YD+ G F V
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS 61
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
V+ + V+G I+V +NR+P QLPW L +D+V+E TG F AG HI+ GAKKVI
Sbjct: 62 -VNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
I+AP T V GVN ++SNASCTTNCLAP VK ++++LG+ G MTT
Sbjct: 121 ISAPGGADVDATVVYGVNHGTLKST-DTVISNASCTTNCLAPLVKPLNDKLGLQDGLMTT 179
Query: 266 THSYTGDQAL 275
H+YT +Q L
Sbjct: 180 VHAYTNNQVL 189
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 321 bits (826), Expect = e-109
Identities = 98/208 (47%), Positives = 128/208 (61%), Gaps = 11/208 (5%)
Query: 73 AAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK 132
G++ + + +K+AINGFGRIGRN + R +D+V +ND K +HLLK
Sbjct: 8 HMGTLEAQTQGPGSMKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLK 64
Query: 133 YDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGP- 191
YDS G + V+ + I VDG+ IK+++ RDP LPWA+LGID+VIE TGVF
Sbjct: 65 YDSTFGVYNKKVE-SRDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATS 123
Query: 192 ---GAGKHI-QAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAP 247
G H+ AGAKKVI+T PAK T V+GVN+ D + + VSNASCTTNCLAP
Sbjct: 124 DKGGYLDHVNHAGAKKVILTVPAKDEI-KTIVLGVNDHDINSD-LKAVSNASCTTNCLAP 181
Query: 248 FVKVMDEELGIVKGAMTTTHSYTGDQAL 275
KV+ E GI +G MTT H+YT DQ +
Sbjct: 182 LAKVLHESFGIEQGLMTTVHAYTNDQRI 209
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 295 bits (757), Expect = 3e-99
Identities = 89/189 (47%), Positives = 118/189 (62%), Gaps = 5/189 (2%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KVAINGFGRIGR R + L+VV VND +HLLKYD++ G F +V+
Sbjct: 5 VKVAINGFGRIGRLAFRRIQEVEG--LEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVE- 61
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
V + V+GK +K S D +LPW +L ID+V+E TG + D A HI+AGAKKV+I
Sbjct: 62 VVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
+APA G T V N ++ D +VS ASCTTN LAP KV++++ G+V+G MTT
Sbjct: 122 SAPATGDL-KTIVFNTNHQELDGS-ETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTI 179
Query: 267 HSYTGDQAL 275
H+YTGDQ
Sbjct: 180 HAYTGDQNT 188
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 276 bits (708), Expect = 1e-91
Identities = 89/195 (45%), Positives = 123/195 (63%), Gaps = 5/195 (2%)
Query: 80 KKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLG 138
++ + + INGFGRIGR LR R D + VV +ND V+ ++LLKYDS+ G
Sbjct: 11 RENLYFQGTLGINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKYDSVHG 68
Query: 139 TFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 198
F V+ V + + ++GK++KV +DP ++PW G IV E TGVF A H++
Sbjct: 69 NFNGTVE-VSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLK 127
Query: 199 AGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGI 258
GAKKVII+AP K P YV+GVN +YD N++SNASCTTNCLAP K+++++ GI
Sbjct: 128 GGAKKVIISAPPKDNV-PMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGI 186
Query: 259 VKGAMTTTHSYTGDQ 273
V+G MTT HS T +Q
Sbjct: 187 VEGLMTTVHSLTANQ 201
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 272 bits (698), Expect = 2e-90
Identities = 87/187 (46%), Positives = 118/187 (63%), Gaps = 6/187 (3%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R R D +++V +ND +++LKYDS G F V+
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
V + + V+GK I+V + RDP L W E+G+D+V E TG+F+ A KHI AGAKKV++
Sbjct: 59 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
T P+K P +V G N Y + +IVSNASCTTNCLAP KV+++ GI++G MTT
Sbjct: 119 TGPSKDNT-PMFVKGANFDKYAGQ--DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTV 175
Query: 267 HSYTGDQ 273
H+ T Q
Sbjct: 176 HATTATQ 182
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 269 bits (690), Expect = 5e-89
Identities = 89/189 (47%), Positives = 115/189 (60%), Gaps = 7/189 (3%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADV 144
+L V INGFGRIGR LR + + VV VND + ++ KYDS G +K V
Sbjct: 7 ELTVGINGFGRIGRLVLRACMEKG---VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSV 63
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
+ N + VD I V ++P Q+PW +G V+E TGV++ A HI AGA++V
Sbjct: 64 E-FRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRV 122
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
+I+AP+ D P +V+GVNE DY+ NIVSNASCTTNCLAP KV+ E GIV+G MT
Sbjct: 123 VISAPSP--DAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMT 180
Query: 265 TTHSYTGDQ 273
T HSYT Q
Sbjct: 181 TVHSYTATQ 189
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 267 bits (686), Expect = 2e-88
Identities = 87/195 (44%), Positives = 121/195 (62%), Gaps = 6/195 (3%)
Query: 80 KKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLG 138
+A K+ INGFGRIGR R GRKD ++VV +ND + + +LLKYDS+ G
Sbjct: 5 HHHHMAATKLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHG 62
Query: 139 TFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQ 198
F +V + + + K + V + +DP Q+PW + +D+V E TGVF+ A H++
Sbjct: 63 QFPCEVT-HADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLK 121
Query: 199 AGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGI 258
GAKKVI++AP K P YV+G+N YD + IVSNASCTTNCLAP KV+++ GI
Sbjct: 122 GGAKKVIMSAPPKDDT-PIYVMGINHHQYDTK-QLIVSNASCTTNCLAPLAKVINDRFGI 179
Query: 259 VKGAMTTTHSYTGDQ 273
V+G MTT H+ T +Q
Sbjct: 180 VEGLMTTVHASTANQ 194
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 267 bits (684), Expect = 5e-88
Identities = 84/199 (42%), Positives = 118/199 (59%), Gaps = 13/199 (6%)
Query: 87 LKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKAD 143
+KV INGFGRIGR + C G + +DVV V D + + ++ ++YD++ G FK +
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 144 VKIV-------DNETISVDGKLIKVVSN-RDPLQLPWAELGIDIVIEGTGVFVDGPGAGK 195
V ++T+ V+G I V R+P LPW +LG++ VIE TG+F A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 196 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVM-DE 254
H++ GA+KV+I+APA T V+GVN +Y+ ++VSNASCTTNCLAP V V+ E
Sbjct: 123 HLRGGARKVVISAPAS-GGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKE 181
Query: 255 ELGIVKGAMTTTHSYTGDQ 273
G+ G MTT HSYT Q
Sbjct: 182 GFGVQTGLMTTIHSYTATQ 200
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 265 bits (681), Expect = 8e-88
Identities = 91/188 (48%), Positives = 118/188 (62%), Gaps = 7/188 (3%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVK 145
++VAINGFGRIGR +R R + ++VV +ND A+++ KYDS G + +V
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS 59
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
D++ I VDGK I RDP LPW +DI I+ TGVF + A KHI AGAKKV+
Sbjct: 60 -HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVV 118
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
ITAP+ P +V+GVNE+ Y + IVSNASCTTNCLAP KV+++ GI +G MTT
Sbjct: 119 ITAPSS--TAPMFVMGVNEEKYTSD-LKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTT 175
Query: 266 THSYTGDQ 273
HS T Q
Sbjct: 176 VHSLTATQ 183
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 264 bits (678), Expect = 3e-87
Identities = 87/191 (45%), Positives = 124/191 (64%), Gaps = 7/191 (3%)
Query: 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFK-A 142
K+K+ INGFGRIGR R +D +++V VND +++ KYD++ G +K +
Sbjct: 2 GKIKIGINGFGRIGRLVARVALQSED--VELVAVNDPFITTDYMTYMFKYDTVHGQWKHS 59
Query: 143 DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202
D+KI D++T+ + K + V R+P ++PWAE G + V+E TGVF D A H++ GAK
Sbjct: 60 DIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAK 119
Query: 203 KVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGA 262
KV+I+AP+K D P +V GVNE Y + +IVSNASCTTNCLAP KV+ + GI++G
Sbjct: 120 KVVISAPSK--DAPMFVCGVNEDKYTSD-IDIVSNASCTTNCLAPLAKVIHDNFGIIEGL 176
Query: 263 MTTTHSYTGDQ 273
MTT H+ T Q
Sbjct: 177 MTTVHAITATQ 187
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 259 bits (664), Expect = 2e-85
Identities = 82/190 (43%), Positives = 115/190 (60%), Gaps = 7/190 (3%)
Query: 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKAD 143
K+KV +NGFGRIGR R +D+V +ND + ++ +YDS G F
Sbjct: 2 GKVKVGVNGFGRIGRLVTRAAFNSGK--VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGT 59
Query: 144 VKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 203
VK +N + ++G I + RDP ++ W + G + V+E TGVF AG H+Q GAK+
Sbjct: 60 VK-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 118
Query: 204 VIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAM 263
VII+AP+ D P +V+GVN + YD+ + I+SNASCTTNCLAP KV+ + GIV+G M
Sbjct: 119 VIISAPSA--DAPMFVMGVNHEKYDNSL-KIISNASCTTNCLAPLAKVIHDNFGIVEGLM 175
Query: 264 TTTHSYTGDQ 273
TT H+ T Q
Sbjct: 176 TTVHAITATQ 185
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 188 bits (479), Expect = 2e-57
Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 14/189 (7%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
KV ING+G IG+ + D ++V+ V + ++ +K V
Sbjct: 2 PAKVLINGYGSIGKRVADAVSMQDD--MEVIGVTKT-----KPDFEARLAVEKGYKLFVA 54
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
I DNE + + + L + DIV++G + + K I
Sbjct: 55 IPDNERV-KLFEDAGIPVEGTILDIIE---DADIVVDGAPKKIGKQNLENIYKPHKVKAI 110
Query: 206 ITAPAKGADI-PTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMT 264
+ K D+ + + + + V SC T L + ++ I K +
Sbjct: 111 LQGGEKAKDVEDNFNALWSYNRCYGK--DYVRVVSCNTTGLCRILYAINSIADIKKARIV 168
Query: 265 TTHSYTGDQ 273
Sbjct: 169 LVRRAADPN 177
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 186 bits (473), Expect = 9e-57
Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 15/192 (7%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
K+KV +NG+G IG+ + D ++++ + + ++ K + ++
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDD--MELIGITKTK-PDFEAYRAKELGIPVYAASEEF 58
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
I E + L +DI+++ T + + +AG K +
Sbjct: 59 IPRFEKEGFE----------VAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTT 265
++V N + + N V SC T L + + E V M
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGK--NYVRVVSCNTTGLVRTLSAIREYADYVYAVMIR 166
Query: 266 THSYTGDQALGC 277
+ D G
Sbjct: 167 RAADPNDTKRGP 178
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 181 bits (462), Expect = 5e-55
Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 17/187 (9%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKI 146
VAING+G +G+ + D + V+ V+ + L K L VK+
Sbjct: 3 AVAINGYGTVGKRVADAIAQQDD--MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKL 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
+ I V G + ++ D IVI+ T + + + G K +
Sbjct: 61 FEKAGIEVAGTVDDMLDEAD------------IVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTT 266
++ N ++ + + SC T L +K + + GI K
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGK--DYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIV 166
Query: 267 HSYTGDQ 273
Sbjct: 167 RRGADPA 173
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 148 bits (374), Expect = 4e-42
Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 16/186 (8%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
VA+NG+G IG+ + D + +V V + A + + + +K
Sbjct: 3 NVAVNGYGTIGKRVADAIIKQPD--MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF 60
Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
+ I V G + DIV++ T V ++Q +
Sbjct: 61 EESGIPVAGTVE------------DLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQG 108
Query: 208 APAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAMTTTH 267
++ N + + + SC T L + +++ + K T
Sbjct: 109 GEKAEVADISFSALCNYNEALGK--KYIRVVSCNTTALLRTICTVNKVSKVEKVRATIVR 166
Query: 268 SYTGDQ 273
+
Sbjct: 167 RAADQK 172
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 39.9 bits (93), Expect = 7e-04
Identities = 19/151 (12%), Positives = 47/151 (31%), Gaps = 36/151 (23%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
K++ AI G+G IGR L+ D ++ +
Sbjct: 9 KIRAAIVGYGNIGRYALQALREAPD--FEIAGIVRR------------------------ 42
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+ + + + +VVS+ + L+ +D+ + + A + ++ G
Sbjct: 43 --NPAEVPFELQPFRVVSDIEQLE------SVDVALVCSPSREVERTALEILKKG-ICTA 93
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVS 236
+ I + + A +++
Sbjct: 94 DSFDIH-DGILALRRSLGDAAGKSGAAAVIA 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 67/183 (36%)
Query: 13 PAIT--------------RIPSKTT---HSFPTQCSTKRLDVAEFAGLRANAGATYATGA 55
PA+T IP+ T HS + E+A L + A
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHS-----------LGEYAALASLADVM----- 1777
Query: 56 RDASFFDAVTAQLTP---KVAAGSVPVKKETVAKLK-VAINGFGRIGRNF----LR--CW 105
S V ++ +VP + + +AIN GR+ +F L+
Sbjct: 1778 ---SIESLV--EVVFYRGMTMQVAVPRDELGRSNYGMIAINP-GRVAASFSQEALQYVVE 1831
Query: 106 HGRKDSPLDVVVVND---------SG---GVKNASHLLKYDSLLGTFKADVKIVD-NETI 152
K + V +VN +G + +++L + + K + I++ +++
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF---IKLQK--IDIIELQKSL 1886
Query: 153 SVD 155
S++
Sbjct: 1887 SLE 1889
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.017
Identities = 23/146 (15%), Positives = 38/146 (26%), Gaps = 45/146 (30%)
Query: 56 RDASFFDAVTAQ-------------LTPK-----------VAAGSVPVKKETVAKLKVAI 91
R D ++A LTP +P + T +++I
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 92 NGFGRIGRNFLRCWHGRKDSPLDVV--VVNDSGGVKNASHLLKYDSLLGTFKADVKIVDN 149
R+ L W K D + ++ S V + K L F I
Sbjct: 333 --IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--- 387
Query: 150 ETISVDGKLIKVVSNRDPLQLPWAEL 175
+ L L W ++
Sbjct: 388 -PTIL-------------LSLIWFDV 399
Score = 35.2 bits (80), Expect = 0.028
Identities = 52/349 (14%), Positives = 91/349 (26%), Gaps = 132/349 (37%)
Query: 10 SRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLT 69
S I R PS T + Q RD + D Q+
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQ--------------------------RDRLYND---NQVF 126
Query: 70 PKVAAGSVPVKKETVAKLK-----------VAINGFGRIG---------RNF-LRC---- 104
K +V + + KL+ V I+G G ++ ++C
Sbjct: 127 AK---YNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 105 ---W--HGRKDSPLDVV-------VVNDSGGVKNASHLLKYDSLLGTFKADVK------- 145
W +SP V+ D + H + + +A+++
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 146 ------IVDNETISV-DGKLIK--------VVSNRDPLQLPWAELGIDIVIEGTGVFVDG 190
++ N V + K +++ R ++ D +
Sbjct: 243 YENCLLVLLN----VQNAKAWNAFNLSCKILLTTRF------KQV-TDFL---------S 282
Query: 191 PGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVK 250
HI + +T P + + + +D EV TTN P
Sbjct: 283 AATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREV--------LTTN---PRR- 329
Query: 251 VMDEELGIVKGAMTTTHSYTGDQALGCFTQGLEESESCSVEHC-PNEHR 298
L I+ T D L S+ P E+R
Sbjct: 330 -----LSII-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1}
PDB: 3jsa_A*
Length = 331
Score = 35.3 bits (82), Expect = 0.023
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 22/130 (16%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDS-----PLDVVVVNDSGGVKNASHLLKYDSLLGTF 140
+ ++I G G +G N LR + +VV V DS + +
Sbjct: 6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKE 65
Query: 141 KADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA- 199
K + ++ E+IS RD DIV++ T DG +
Sbjct: 66 KGSLDSLEYESISAS-----EALARD----------FDIVVDATPASADGKKELAFYKET 110
Query: 200 -GAKKVIITA 208
K ++TA
Sbjct: 111 FENGKDVVTA 120
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB:
1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 33.7 bits (77), Expect = 0.070
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTF-KADV 144
++VAI G+G +GR+ + + D L V + + + + + + DV
Sbjct: 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDL-VGIFSRRATLDTKTPVFDVADVDKHADDVDV 61
Query: 145 KIV 147
+
Sbjct: 62 LFL 64
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 33.3 bits (76), Expect = 0.094
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSL 136
K V + G GR G LR + + ++ S + ++ SL
Sbjct: 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISL 57
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance,
cell WALL, transmembrane; 2.4A {Streptococcus
pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1
PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B*
2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A*
2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Length = 702
Score = 32.0 bits (73), Expect = 0.31
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 109 KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV------ 162
+ + + +VV +KN+S + + N+ + + + V
Sbjct: 606 RRNLVQPIVVGTGTKIKNSSA-----------EEGKNLAPNQQVLILSDKAEEVPDMYGW 654
Query: 163 SNRDPLQLPWAELGIDIVIEGTGVFVDG--PGAGKHIQAGAKKVIIT 207
+ L L I++ +G+G V A I+ KK+ +T
Sbjct: 655 TKETAETL-AKWLNIELEFQGSGSTVQKQDVRANTAIKDI-KKITLT 699
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 31.7 bits (71), Expect = 0.40
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 276 GCFTQGLEESESCSVEHCPNEHRCRQG--CFSCDATAQRQAQRHCAPCANTKCFS 328
+ E ++ C C N CR G + CD + R C A +
Sbjct: 610 VKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYD 664
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 30.3 bits (68), Expect = 0.71
Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 29/160 (18%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
KLKVAI G G IG + + R L++ + G+ AS L +G V
Sbjct: 4 KLKVAIIGSGNIGTDLMIKVL-RNAKYLEMGAM---VGIDAASDGLARAQRMG-----VT 54
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGT--GVFVDGPGAGKHIQAGAKK 203
V+G + ID V + T V + + G +
Sbjct: 55 TTYA---GVEGLIKLPEFA-----------DIDFVFDATSASAHVQNEALLRQAKPGIRL 100
Query: 204 VIITAPAKGADIPTYVVGVNEKD-YDHEVANIVSNASCTT 242
+ +T A G P V VN ++ N+V+ T
Sbjct: 101 IDLTPAAIG---PYCVPVVNLEEHLGKLNVNMVTCGGQAT 137
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 29.5 bits (67), Expect = 1.4
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 22/129 (17%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDS----PLDVVVVNDSGGVKNASHLLKYDSLLGTFK 141
++++ + G G +G N LR + VV V+DS + +L + K
Sbjct: 4 EIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEK 63
Query: 142 ADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA-- 199
+ + S L+ D++++ T DG +
Sbjct: 64 TG--RISDRAFSGPEDLMGE--------------AADLLVDCTPASRDGVREYSLYRMAF 107
Query: 200 GAKKVIITA 208
+ ++TA
Sbjct: 108 ESGMNVVTA 116
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB:
1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E*
1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E*
1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Length = 178
Score = 28.7 bits (65), Expect = 1.8
Identities = 8/59 (13%), Positives = 22/59 (37%)
Query: 141 KADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA 199
+ +++I ++ D I V + + ID+ ++G V ++ +
Sbjct: 3 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMS 61
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 29.5 bits (65), Expect = 1.8
Identities = 17/149 (11%), Positives = 40/149 (26%), Gaps = 17/149 (11%)
Query: 87 LKVAINGFG----RIGRNFLRCWHGRKDSPLDVVVVN----DSGGVKN--ASHLLKYDSL 136
++ + G G + F + + VN D ++N + +D L
Sbjct: 43 IRWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRIHFDGL 102
Query: 137 LGTFKAD---VKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193
G + + D ET + ++ + E + + +
Sbjct: 103 KGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQ----FLICLGAG 158
Query: 194 GKHIQAGAKKVIITAPAKGADIPTYVVGV 222
G V+ + P ++
Sbjct: 159 GGVGTGWGSLVLQLIREQFFPCPVSMLIS 187
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv
T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A
{Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Length = 451
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 3/79 (3%)
Query: 18 IPSKTTHSFPTQCSTK--RLDVAEFAGLRANAGATYATGARDASFFDAVTAQL-TPKVAA 74
+ P S + L+ A T + S DA++A +
Sbjct: 217 VAGGDAVLTPVSASWAFFTFSPKAMSELKDAATKTLDASTKFVSTDDALSAFIWKSASRV 276
Query: 75 GSVPVKKETVAKLKVAING 93
+ + A++
Sbjct: 277 RLERIDGSAPTEFCRAVDA 295
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding
rossmann fold, structural genomics; HET: MSE PG4 PGE;
1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 29.2 bits (66), Expect = 2.0
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121
+ +++A+ G GR G+N++R G +V + S
Sbjct: 9 SPVRLALIGAGRWGKNYIRTIAGLPG--AALVRLASS 43
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 29.0 bits (65), Expect = 2.2
Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 11/123 (8%)
Query: 113 LDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPW 172
V +V + +K A L + V + +G L+ +V D L+
Sbjct: 134 RYVSIVWEGTPLKAALKALLL------SNSMALPVVDS----EGNLVGIVDETDLLRDSE 183
Query: 173 AELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTY-VVGVNEKDYDHEV 231
+ + K + A+I T V+ HEV
Sbjct: 184 IVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEV 243
Query: 232 ANI 234
A
Sbjct: 244 ALK 246
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 28.3 bits (64), Expect = 3.6
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 20/75 (26%)
Query: 81 KETVAKLKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDS-GGVKNASHLLKYDSLL 137
++ L V + G G +G + G + ++V + V +A L
Sbjct: 170 LGSLDGLTVLVQGLGAVGGSLASLAAEAGAQ-----LLVADTDTERVAHAVAL------- 217
Query: 138 GTFKADVKIVDNETI 152
V E +
Sbjct: 218 -----GHTAVALEDV 227
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH,
oxidoreductase; 1.80A {Staphylococcus aureus}
Length = 243
Score = 28.0 bits (63), Expect = 4.0
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
A +K+ + G+G + + R ++ ++V V ++ + Y + ADV
Sbjct: 2 ASMKILLIGYGAMNQRVARL---AEEKGHEIVGVIENTPKATTPYQQ-YQHIADVKGADV 57
Query: 145 KIVD 148
+D
Sbjct: 58 -AID 60
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 28.0 bits (63), Expect = 4.0
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 74 AGSVPVKKETVAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK 132
G++ + + +++ + G GR+GR + RKD L V+V S +
Sbjct: 9 MGTLEAQTQGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKG------SSFVD 62
Query: 133 YDS--LLGTFKADVKIVDN 149
D+ L+G+ V+I D+
Sbjct: 63 KDASILIGSDFLGVRITDD 81
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 27.9 bits (62), Expect = 4.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
Q P +LG D+V+ T ++GP G + AG K+++
Sbjct: 189 FNQPPALKLGADLVVTSTDKLMEGPRGG--LLAGKKELV 225
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo
sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Length = 185
Score = 27.7 bits (61), Expect = 4.6
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 284 ESESCSVEHCPNEHRCRQGCFSC-DATAQRQAQRHCAP 320
+E C+ CP + + D T ++ + AP
Sbjct: 44 ITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAP 81
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 28.1 bits (63), Expect = 4.7
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 83 TVAKLKVAINGFGRIGRNF 101
++ +K + FG G+ F
Sbjct: 2 SLEIIKTGLAAFGMSGQVF 20
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine
dehydrogenase, structural G joint center for structural
genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Length = 327
Score = 27.9 bits (63), Expect = 5.1
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 26/130 (20%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDS------PLDVVVVNDSGGVKNASHLLKYDSLLGTF 140
+K+AI GFG +G+ +++ V V DS + L
Sbjct: 3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLV-------- 54
Query: 141 KADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA- 199
+A + + D K I+VV + D D++IE + VDG +I+
Sbjct: 55 EALRMKRETGMLRDDAKAIEVVRSAD----------YDVLIEASVTRVDGGEGVNYIREA 104
Query: 200 -GAKKVIITA 208
K ++T+
Sbjct: 105 LKRGKHVVTS 114
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase;
HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB:
2ixb_A*
Length = 444
Score = 27.8 bits (61), Expect = 5.5
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKD 110
K+++A G G+ + R D
Sbjct: 20 KVRIAFIAVGLRGQTHVENMARRDD 44
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative
oxidoreductase YVAA, oxidoredu PSI-2, protein structure
initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Length = 358
Score = 27.7 bits (62), Expect = 5.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 83 TVAKLKVAINGFGRIGRNF 101
++ +KV I G+G G F
Sbjct: 2 SLDTIKVGILGYGLSGSVF 20
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase,
probable hydrolase, PS aeruginosa, structurual genomics;
2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Length = 340
Score = 27.1 bits (61), Expect = 7.5
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 214 DIPTYVVGVNEKD-YDHEVANIVSNASCTTNCLAPFVKVMDEELGI 258
P +V VN + ++S+ L + + L
Sbjct: 106 VAPPVMVSVNAERLASQAAPFLLSSPCAVAAELCEVLAPLLATLDC 151
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 26.9 bits (60), Expect = 8.7
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120
L++A+ G GRIG D ++VV+ D
Sbjct: 4 TLRIALFGAGRIGHVHAANIAANPDL--ELVVIAD 36
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella
melitensis biovar abortus 230ORGANISM_TAXID} PDB:
3upy_A*
Length = 446
Score = 27.1 bits (59), Expect = 9.0
Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 13/130 (10%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
+++ + G G +G + + + ++V ++ + + K + + +
Sbjct: 23 PIRIGLIGAGEMGTDIVT--QVARMQGIEVGALSA----RRLPNTFKAIRTAYGDEENAR 76
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGP-------GAGKHIQ 198
E+ ++ D L + ID++I+ TG+ G GKH+
Sbjct: 77 EATTESAMTRAIEAGKIAVTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLV 136
Query: 199 AGAKKVIITA 208
+ +T
Sbjct: 137 MMNVEADVTI 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.399
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,998,653
Number of extensions: 315649
Number of successful extensions: 1111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1017
Number of HSP's successfully gapped: 105
Length of query: 329
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 235
Effective length of database: 4,077,219
Effective search space: 958146465
Effective search space used: 958146465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)