BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020219
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NUQ|A Chain A, Structure Of A Putative Nucleotide Phosphatase From
Saccharomyces Cerevisiae
Length = 282
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 96/239 (40%), Gaps = 58/239 (24%)
Query: 48 LLFDLDDTLYPYSSGIAAACGQNIKDYMVEKLGIERSKIEDLGNLLYKNYGTTMAGLRAI 107
FD+D+ LY S+ I Q+I + L + L N YK YG + GL +
Sbjct: 60 FFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VM 118
Query: 108 GYDFDYDDYHSFVHGRLPYEN-LKPD-PVXXXXXXXXXXXKI----IFTNADKVHAVKVL 161
+ + +Y+ V LP ++ LKPD P+ KI +FTNA K HA++ L
Sbjct: 119 FHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCL 178
Query: 162 SRLGLEDCFEGIICFETLNPTHKNTVSDDEDDIAFVESAASTTTSANGPQIFDIIGHFAQ 221
LG+ D F+G + + + + + T
Sbjct: 179 RLLGIADLFDG---------------------LTYCDYSRTDT----------------- 200
Query: 222 PNPSLVALPKTPIACKPSELAIEKALKIASI-NPQRTLFFEDSVRNIQAGKRVGLDTVL 279
+ CKP A EKA+K + + + F +DS +NI+ G ++G+ T +
Sbjct: 201 ------------LVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCI 247
>pdb|3ONN|A Chain A, Crystal Structure Of 5'-Nucleotidase Sdt1 From
Saccharomyces Cerevisiae
Length = 263
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 96/237 (40%), Gaps = 58/237 (24%)
Query: 50 FDLDDTLYPYSSGIAAACGQNIKDYMVEKLGIERSKIEDLGNLLYKNYGTTMAGLRAIGY 109
FD+D+ LY S+ I Q+I + L + L N YK YG + GL + +
Sbjct: 35 FDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VMFH 93
Query: 110 DFDYDDYHSFVHGRLPYEN-LKPD-PVXXXXXXXXXXXKI----IFTNADKVHAVKVLSR 163
+ +Y+ V LP ++ LKPD P+ KI +FTNA K HA++ L
Sbjct: 94 KVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRL 153
Query: 164 LGLEDCFEGIICFETLNPTHKNTVSDDEDDIAFVESAASTTTSANGPQIFDIIGHFAQPN 223
LG+ D F+G + + + + + T
Sbjct: 154 LGIADLFDG---------------------LTYCDYSRTDT------------------- 173
Query: 224 PSLVALPKTPIACKPSELAIEKALKIASI-NPQRTLFFEDSVRNIQAGKRVGLDTVL 279
+ CKP A EKA+K + + + F +DS +NI+ G ++G+ T +
Sbjct: 174 ----------LVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCI 220
>pdb|3OPX|A Chain A, Crystal Structure Of Pyrimidine 5 -Nucleotidase Sdt1 From
Saccharomyces Cerevisiae Complexed With Uridine
5'-Monophosphate
Length = 263
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 95/237 (40%), Gaps = 58/237 (24%)
Query: 50 FDLDDTLYPYSSGIAAACGQNIKDYMVEKLGIERSKIEDLGNLLYKNYGTTMAGLRAIGY 109
F +D+ LY S+ I Q+I + L + L N YK YG + GL + +
Sbjct: 35 FAIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VMFH 93
Query: 110 DFDYDDYHSFVHGRLPYEN-LKPD-PVXXXXXXXXXXXKI----IFTNADKVHAVKVLSR 163
+ +Y+ V LP ++ LKPD P+ KI +FTNA K HA++ L
Sbjct: 94 KVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRL 153
Query: 164 LGLEDCFEGIICFETLNPTHKNTVSDDEDDIAFVESAASTTTSANGPQIFDIIGHFAQPN 223
LG+ D F+G + + + + + T
Sbjct: 154 LGIADLFDG---------------------LTYCDYSRTDT------------------- 173
Query: 224 PSLVALPKTPIACKPSELAIEKALKIASI-NPQRTLFFEDSVRNIQAGKRVGLDTVL 279
+ CKP A EKA+K + + + F +DS +NI+ G ++G+ T +
Sbjct: 174 ----------LVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCI 220
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 237 KPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVGLDTVL 279
KPS + K L+I P++ L D+ +I+AGKR G T L
Sbjct: 139 KPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTAL 181
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 237 KPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVGLDTVL 279
KPS + K L+I P++ L D+ +I+AGKR G T L
Sbjct: 137 KPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTAL 179
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 237 KPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVGLDTVLI 280
KP + L+ +P T+FF+D+ NI+ ++G+ ++L+
Sbjct: 148 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 191
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 237 KPSELAIEKALKIASINPQRTLFFEDSV-RNIQAGKRVGLDTVLI--GK-SQR----VKG 288
KP +KALK ++ P+ L D + +I KRVG+ TV GK S+R K
Sbjct: 150 KPHPKIFKKALKAFNVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELEYRKY 209
Query: 289 ADYAFESIHNIKEAIPELWESDMKSEVGYPGQ 320
ADY +++ ++ E + ES +V P Q
Sbjct: 210 ADYEIDNLESLLEVLAR--ESSSNKKVHPPRQ 239
>pdb|2O2X|A Chain A, Crystal Structure Of A Putative Had-Like Phosphatase
(Mll2559) From Mesorhizobium Loti At 1.50 A Resolution
Length = 218
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 227 VALPKTPIACKPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVGL 275
+A+P P KP+ + +A K +++ QR+L D + + QAGKR GL
Sbjct: 128 LAIPDHP-XRKPNPGXLVEAGKRLALDLQRSLIVGDKLADXQAGKRAGL 175
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 24/155 (15%)
Query: 158 VKVLSRLGLEDCFEGIICFETLNPTHKNTVSDDEDDIAFVESAASTTTSANGP---QIFD 214
VK++ + D + GI+ + L N + A + S NGP + +
Sbjct: 81 VKMIQDVSPADVYPGIL--QLLKDLRSNKIK-----------IALASASKNGPFLLERMN 127
Query: 215 IIGHFAQPNPSLVALPKTPIACKPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVG 274
+ G+F +A P A KP+ A + P ++ EDS IQA K G
Sbjct: 128 LTGYF-----DAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182
Query: 275 LDTVLIGKSQRVKGADYAF--ESIHNIKEAIPELW 307
+ +G+ + + G D ++ H E + E+W
Sbjct: 183 ALPIGVGRPEDL-GDDIVIVPDTSHYTLEFLKEVW 216
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 24/155 (15%)
Query: 158 VKVLSRLGLEDCFEGIICFETLNPTHKNTVSDDEDDIAFVESAASTTTSANGP---QIFD 214
VK++ + D + GI+ + L N + A + S NGP + +
Sbjct: 81 VKMIQDVSPADVYPGIL--QLLKDLRSNKIK-----------IALASASKNGPFLLERMN 127
Query: 215 IIGHFAQPNPSLVALPKTPIACKPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVG 274
+ G+F +A P A KP+ A + P ++ EDS IQA K G
Sbjct: 128 LTGYF-----DAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182
Query: 275 LDTVLIGKSQRVKGADYAF--ESIHNIKEAIPELW 307
+ +G+ + + G D ++ H E + E+W
Sbjct: 183 ALPIGVGRPEDL-GDDIVIVPDTSHYTLEFLKEVW 216
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 24/160 (15%)
Query: 158 VKVLSRLGLEDCFEGIICFETLNPTHKNTVSDDEDDIAFVESAASTTTSANGP---QIFD 214
VK++ + D + GI+ + L N + A + S NGP + +
Sbjct: 81 VKMIQDVSPADVYPGIL--QLLKDLRSNKIK-----------IALASASKNGPFLLERMN 127
Query: 215 IIGHFAQPNPSLVALPKTPIACKPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVG 274
+ G+F +A P A KP+ A + P ++ EDS IQA K G
Sbjct: 128 LTGYF-----DAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182
Query: 275 LDTVLIGKSQRVKGADYAF--ESIHNIKEAIPELWESDMK 312
+ +G+ + + G D ++ H E + E+W K
Sbjct: 183 ALPIGVGRPEDL-GDDIVIVPDTSHYTLEFLKEVWLQKQK 221
>pdb|3EPS|A Chain A, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE From E. Coli
pdb|3EPS|B Chain B, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE From E. Coli
Length = 578
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 52 LDDTLYPYSSGIAAACGQNIKDYMVEKLGIERSKIEDL-------GNLLYKNYGTTMAGL 104
++ + P + + GQ ++D +E+ G + I L G++L+KN+G T G
Sbjct: 415 IERRMVPLNIWLEQVEGQQLRD-AIEEYG---NAIRQLAAANIFPGDMLFKNFGVTRHG- 469
Query: 105 RAIGYDFD 112
R + YD+D
Sbjct: 470 RVVFYDYD 477
>pdb|3LC6|A Chain A, The Alternative Conformation Structure Of Isocitrate
Dehydrogenase Kinase/phosphatase From E. Coli
pdb|3LC6|B Chain B, The Alternative Conformation Structure Of Isocitrate
Dehydrogenase Kinase/phosphatase From E. Coli
pdb|3LCB|A Chain A, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|B Chain B, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli
Length = 578
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 52 LDDTLYPYSSGIAAACGQNIKDYMVEKLGIERSKIEDL-------GNLLYKNYGTTMAGL 104
++ + P + + GQ ++D +E+ G + I L G++L+KN+G T G
Sbjct: 415 IERRMVPLNIWLEQVEGQQLRD-AIEEYG---NAIRQLAAANIFPGDMLFKNFGVTRHG- 469
Query: 105 RAIGYDFD 112
R + YD+D
Sbjct: 470 RVVFYDYD 477
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 249 IASINPQRTLFFEDSVRNIQAGKRVGL-----DTV----LIGKSQRVKGADYAFESI 296
I S + + L ED VRNIQA +RV + DT+ L+ + DYAF +I
Sbjct: 190 IYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNI 246
>pdb|3QQR|A Chain A, Crystal Structure Of Parasponia Hemoglobin; Differential
Heme Coordination Is Linked To Quaternary Structure
pdb|3QQR|B Chain B, Crystal Structure Of Parasponia Hemoglobin; Differential
Heme Coordination Is Linked To Quaternary Structure
Length = 162
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 293 FESIHNIKEAIPELWESDMKSEVG 316
F + IKEA+PE+W +MK+ G
Sbjct: 120 FALLETIKEAVPEMWSPEMKNAWG 143
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 249 IASINPQRTLFFEDSVRNIQAGKRVGL-----DTV----LIGKSQRVKGADYAFESI 296
I S + + L ED VRNIQA +RV + DT+ L+ + DYAF +I
Sbjct: 233 IYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNI 289
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 249 IASINPQRTLFFEDSVRNIQAGKRVGL-----DTV----LIGKSQRVKGADYAFESI 296
I S + + L ED VRNIQA +RV + DT+ L+ + DYAF +I
Sbjct: 232 IYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNI 288
>pdb|3QQQ|A Chain A, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Trema Tomentosa
pdb|3QQQ|B Chain B, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Trema Tomentosa
Length = 168
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 293 FESIHNIKEAIPELWESDMKSEVG 316
F + IKEA+PE+W +MK+ G
Sbjct: 126 FALLETIKEAVPEMWSPEMKNAWG 149
>pdb|2XQV|A Chain A, The X-Ray Structure Of The Zn(Ii) Bound Znua From
Salmonella Enterica
pdb|2XY4|A Chain A, X-Ray Structure Of Znua-Wt From Salmonella Enterica
Length = 288
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 235 ACKPSELA-IEKALKIASINPQRTLFFEDSVRNIQAGKRVGLDTVLIGKSQRVKGAD 290
+ +PS++ ++ A + + P+ F E SVRNI K+V + + K +KGAD
Sbjct: 37 SLRPSDVKRLQGADLVVWVGPEMEAFMEKSVRNIPDNKQVTIAQLADVKPLLMKGAD 93
>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
Length = 268
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 234 IACKPSELAIEKALKIASINPQRTLFFEDSVR-NIQAGKRVGLDTVLI--GKSQRVK--- 287
+ KPSE+ +AL I ++ + D + ++ AGK +G +TVL+ G + R
Sbjct: 184 VVGKPSEVIXREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENLDQ 243
Query: 288 -------GADYAFESIHNIKEAI 303
DY F S+ + EA+
Sbjct: 244 XIERHGLKPDYVFNSLKDXVEAL 266
>pdb|3CNH|A Chain A, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
pdb|3CNH|B Chain B, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
Length = 200
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 237 KPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVGLDTV 278
KP+ L +A + P+ + +D ++N+QA + VG V
Sbjct: 141 KPNPAXYRLGLTLAQVRPEEAVXVDDRLQNVQAARAVGXHAV 182
>pdb|2V62|A Chain A, Structure Of Vaccinia-Related Kinase 2
pdb|2V62|B Chain B, Structure Of Vaccinia-Related Kinase 2
Length = 345
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 30 IKMEY--------EGRYRMAAAKYDCL-----LFDLDDTLYP--YSSGIAAACGQNIKDY 74
+K+EY E ++ AK DC+ LD P Y SG+ G++ +
Sbjct: 70 VKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFM 129
Query: 75 MVEKLGIERSKIEDLGNLLYKNYGTTMAGLRAIGYDFDYDDYHSFVHGRLPYENL 129
++E+LGI+ KI N +K G+R + +Y + +VHG + NL
Sbjct: 130 VMERLGIDLQKISGQ-NGTFKKSTVLQLGIRMLDV-LEYIHENEYVHGDIKAANL 182
>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Np_784602.1) From Lactobacillus Plantarum At 1.50 A
Resolution
Length = 209
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 237 KPSELAIEKALKIASINPQRTLFFEDSVRNIQAGKRVGLD 276
KP L + AL+ ++ PQ LF DSV + Q + +D
Sbjct: 138 KPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAANVD 177
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 244 EKALKIASINPQRTLFFEDSVRNIQAGK 271
E LKI ++NP + L ED + +I+ GK
Sbjct: 330 EDLLKILTVNPAKILGLEDRIGSIEPGK 357
>pdb|3PAY|A Chain A, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
pdb|3PAY|B Chain B, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
pdb|3PAY|C Chain C, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
pdb|3PAY|D Chain D, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
Length = 314
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 27 VFSIKMEYEGRYRMAAAKYDCLLFDLDDT-LYPYSSGIAAACGQNIKDYMVEKLGIERSK 85
VF EY + D L+FD DD L+ S +AA G N + + ++L K
Sbjct: 20 VFDYNXEYADAFNPQVKSVDVLVFDSDDKLLFTKSVKVAALVGGN-RXSLTDELDFGSYK 78
Query: 86 IEDLGNL 92
+ +G+L
Sbjct: 79 VLTVGSL 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,711,934
Number of Sequences: 62578
Number of extensions: 384380
Number of successful extensions: 927
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 37
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)