Query 020222
Match_columns 329
No_of_seqs 156 out of 663
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:00:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 99.9 2E-24 4.3E-29 197.7 12.2 123 6-130 3-126 (242)
2 KOG0439 VAMP-associated protei 99.9 1.2E-23 2.7E-28 190.6 14.7 128 4-133 7-137 (218)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 8.9E-22 1.9E-26 158.8 13.0 104 6-110 2-107 (109)
4 PF14874 PapD-like: Flagellar- 98.5 2.5E-06 5.3E-11 68.5 11.2 70 4-73 2-74 (102)
5 PF00345 PapD_N: Pili and flag 96.8 0.016 3.6E-07 48.0 10.1 109 6-127 2-119 (122)
6 PF14646 MYCBPAP: MYCBP-associ 92.4 0.69 1.5E-05 46.8 9.0 63 12-74 238-313 (426)
7 PRK09918 putative fimbrial cha 92.3 1.3 2.8E-05 41.5 10.1 109 5-129 25-138 (230)
8 PRK09926 putative chaperone pr 91.3 1.6 3.5E-05 41.3 9.7 86 5-95 26-121 (246)
9 PRK15249 fimbrial chaperone pr 91.2 1.6 3.5E-05 41.6 9.5 86 5-95 29-125 (253)
10 PRK15246 fimbrial assembly cha 89.0 3.5 7.6E-05 39.0 9.8 86 5-95 11-106 (233)
11 PF07610 DUF1573: Protein of u 88.9 1.8 3.9E-05 30.6 6.0 43 27-70 2-45 (45)
12 PRK11385 putativi pili assembl 88.6 3.3 7.1E-05 39.3 9.4 86 5-95 27-124 (236)
13 PRK15295 fimbrial assembly cha 87.5 5.2 0.00011 37.5 9.9 85 5-95 20-111 (226)
14 PRK15299 fimbrial chaperone pr 87.3 5.3 0.00011 37.4 9.8 85 5-95 23-115 (227)
15 PF11614 FixG_C: IG-like fold 87.2 2.4 5.3E-05 35.0 6.8 51 24-74 34-86 (118)
16 PRK15211 fimbrial chaperone pr 86.5 6.2 0.00013 37.3 9.8 84 6-95 24-113 (229)
17 PRK15290 lfpB fimbrial chapero 85.3 7.3 0.00016 37.1 9.7 85 6-95 39-131 (243)
18 PRK15192 fimbrial chaperone Bc 83.8 14 0.0003 35.2 10.8 82 6-95 24-119 (234)
19 PRK15208 long polar fimbrial c 83.8 8.9 0.00019 35.9 9.5 85 5-95 22-112 (228)
20 PRK15188 fimbrial chaperone pr 80.9 14 0.0003 34.9 9.7 84 6-95 29-118 (228)
21 COG3121 FimC P pilus assembly 80.9 22 0.00047 33.5 11.0 84 6-95 29-119 (235)
22 PRK15254 fimbrial chaperone pr 80.2 16 0.00035 34.7 9.9 86 5-95 17-110 (239)
23 PRK15195 fimbrial chaperone pr 78.8 19 0.00041 33.9 9.8 85 5-95 26-116 (229)
24 PF06280 DUF1034: Fn3-like dom 76.8 7.5 0.00016 31.9 5.8 53 21-73 8-81 (112)
25 PRK15218 fimbrial chaperone pr 75.9 41 0.00089 31.7 11.2 84 6-95 20-113 (226)
26 PRK15224 pili assembly chapero 73.0 49 0.0011 31.5 11.0 81 7-95 31-118 (237)
27 PRK15274 putative periplasmic 71.2 60 0.0013 31.3 11.2 84 7-95 29-120 (257)
28 PRK15233 putative fimbrial cha 70.1 42 0.00092 32.2 9.9 79 9-95 45-130 (246)
29 PRK15253 putative fimbrial ass 68.8 74 0.0016 30.4 11.2 83 7-95 36-128 (242)
30 TIGR03079 CH4_NH3mon_ox_B meth 65.8 26 0.00056 35.9 7.7 54 20-73 281-355 (399)
31 PF10633 NPCBM_assoc: NPCBM-as 62.7 15 0.00032 28.2 4.4 54 21-74 5-62 (78)
32 PRK15285 putative fimbrial cha 62.6 1.2E+02 0.0027 29.0 11.4 83 8-95 29-119 (250)
33 smart00809 Alpha_adaptinC2 Ada 60.5 55 0.0012 25.9 7.5 53 20-72 17-73 (104)
34 PF02883 Alpha_adaptinC2: Adap 59.5 93 0.002 25.2 8.9 53 20-72 23-79 (115)
35 PF00927 Transglut_C: Transglu 58.8 40 0.00088 27.1 6.5 57 19-75 13-79 (107)
36 PF02753 PapD_C: Pili assembly 57.0 10 0.00023 28.3 2.6 42 27-69 1-44 (68)
37 PF05506 DUF756: Domain of unk 55.7 46 0.00099 26.3 6.2 44 24-70 21-65 (89)
38 PF01166 TSC22: TSC-22/dip/bun 51.0 14 0.00029 28.5 2.3 37 174-214 13-49 (59)
39 PRK13169 DNA replication intia 50.9 14 0.0003 31.5 2.6 33 174-210 21-53 (110)
40 PRK15308 putative fimbrial pro 50.1 1.8E+02 0.0039 27.8 10.2 87 2-96 14-118 (234)
41 PF11611 DUF4352: Domain of un 47.1 80 0.0017 25.3 6.5 53 21-73 36-102 (123)
42 PF04744 Monooxygenase_B: Mono 44.8 1.2E+02 0.0025 31.3 8.4 65 6-72 249-335 (381)
43 PF06156 DUF972: Protein of un 41.2 24 0.00053 29.7 2.6 32 174-209 21-52 (107)
44 PF03173 CHB_HEX: Putative car 38.9 35 0.00076 30.8 3.5 34 39-72 69-104 (164)
45 PF12690 BsuPI: Intracellular 37.2 1.4E+02 0.0031 23.6 6.4 20 24-43 3-22 (82)
46 PF05812 Herpes_BLRF2: Herpesv 36.9 27 0.00058 30.3 2.2 20 177-200 5-24 (118)
47 TIGR02745 ccoG_rdxA_fixG cytoc 34.3 4.3E+02 0.0093 27.5 10.8 52 22-73 347-400 (434)
48 PHA03162 hypothetical protein; 33.5 32 0.00068 30.5 2.2 20 177-200 15-34 (135)
49 PHA03155 hypothetical protein; 33.0 33 0.00071 29.6 2.2 19 178-200 11-29 (115)
50 PF00553 CBM_2: Cellulose bind 32.7 93 0.002 25.2 4.7 52 22-73 14-85 (101)
51 PF13473 Cupredoxin_1: Cupredo 30.5 2.1E+02 0.0045 22.9 6.4 55 7-73 31-86 (104)
52 PF09640 DUF2027: Domain of un 26.3 1E+02 0.0022 28.2 4.2 67 23-96 18-84 (162)
53 smart00637 CBD_II CBD_II domai 25.9 3.1E+02 0.0067 21.5 6.6 24 47-70 50-75 (92)
54 PF04977 DivIC: Septum formati 25.7 70 0.0015 24.0 2.7 25 174-202 23-47 (80)
55 PF06005 DUF904: Protein of un 25.4 72 0.0016 25.1 2.7 16 174-189 17-32 (72)
56 TIGR02209 ftsL_broad cell divi 24.4 71 0.0015 24.7 2.6 24 174-201 30-53 (85)
57 COG3121 FimC P pilus assembly 24.3 1.9E+02 0.0042 27.2 5.9 43 25-69 165-209 (235)
58 PF06030 DUF916: Bacterial pro 24.0 1.9E+02 0.0042 24.5 5.3 31 13-43 19-49 (121)
59 PF05753 TRAP_beta: Translocon 24.0 3.8E+02 0.0082 24.5 7.5 53 20-73 37-98 (181)
60 PF13205 Big_5: Bacterial Ig-l 23.1 3.6E+02 0.0078 20.9 6.9 56 12-70 26-84 (107)
61 PF08402 TOBE_2: TOBE domain; 22.7 2.9E+02 0.0063 19.6 7.6 65 6-70 1-69 (75)
62 KOG4797 Transcriptional regula 22.6 82 0.0018 27.2 2.7 33 174-210 66-98 (123)
63 TIGR03752 conj_TIGR03752 integ 21.9 73 0.0016 33.6 2.7 30 174-207 65-94 (472)
64 TIGR00219 mreC rod shape-deter 21.6 84 0.0018 30.5 3.0 34 174-208 72-106 (283)
65 PF07705 CARDB: CARDB; InterP 21.6 3.2E+02 0.007 20.6 5.8 54 20-73 18-72 (101)
66 PRK15249 fimbrial chaperone pr 21.3 1.9E+02 0.0041 27.6 5.3 42 26-68 177-219 (253)
67 PF10342 GPI-anchored: Ser-Thr 20.2 4E+02 0.0086 20.3 6.9 59 10-69 14-77 (93)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.91 E-value=2e-24 Score=197.72 Aligned_cols=123 Identities=35% Similarity=0.609 Sum_probs=111.4
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCC-CCCCCCC
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAP-PDLQCKD 84 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P-~d~~~kD 84 (329)
|.++|.- .|..|++...++.+.|.|++.++|+||||||+|+.||||||.|.|.|++++.|+|+||++++.| +|++|+|
T Consensus 3 veisp~~-~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQT-TFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCce-EEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 5677754 5667999999999999999999999999999999999999999999999999999999998876 6899999
Q ss_pred eEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCCCC
Q 020222 85 KFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQS 130 (329)
Q Consensus 85 KFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~~p~~s 130 (329)
|||||++..+...+..++. ++|....+..+.+.||+|+|.....+
T Consensus 82 KFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvyse~~is 126 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYSEEEIS 126 (242)
T ss_pred eeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEeeccccC
Confidence 9999999999988888886 89999888889999999999954443
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.2e-23 Score=190.58 Aligned_cols=128 Identities=39% Similarity=0.660 Sum_probs=115.0
Q ss_pred cceEEeC-CeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCCC
Q 020222 4 ELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC 82 (329)
Q Consensus 4 ~LL~I~P-~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~~ 82 (329)
.+|.+.| .+|.|.++++.+..|.|+|+|+++.++|||||||+|++|+|||+.|+|.||+++.|.|.+|+....|.+++|
T Consensus 7 ~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~d~~~ 86 (218)
T KOG0439|consen 7 SLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPPDFKS 86 (218)
T ss_pred CccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCchhhcc
Confidence 6799999 689999999988999999999999999999999999999999999999999999999999998878889899
Q ss_pred CCeEEEEEEEeCCCCCccchhhhhhcccC--CCceeEEEeEEEEeCCCCCCCc
Q 020222 83 KDKFLIQGIVVPFGTSDEDITSDMFAKDS--GKYVEEKKLRVILMSPPQSPVL 133 (329)
Q Consensus 83 kDKFLVQs~~vp~~~t~~di~~eiWkk~~--k~~I~e~KLrVvf~~p~~sp~~ 133 (329)
+|||+||++.++.+ +..++ .+.|.... +..+.+.+++|.|..+..++..
T Consensus 87 r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~ 137 (218)
T KOG0439|consen 87 RHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSV 137 (218)
T ss_pred cceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCccc
Confidence 99999999999987 22233 36888766 6789999999999999887553
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.87 E-value=8.9e-22 Score=158.82 Aligned_cols=104 Identities=38% Similarity=0.623 Sum_probs=83.8
Q ss_pred eEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCCCCC
Q 020222 6 LDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKD 84 (329)
Q Consensus 6 L~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~~kD 84 (329)
|.|+|. .|.|.++.++...+.|+|+|+++++||||||||+|.+|+|+|+.|+|.||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 789997 79999999999999999999999999999999999999999999999999999999999998765433 2399
Q ss_pred eEEEEEEEeCCCCCcc-chhhhhhccc
Q 020222 85 KFLIQGIVVPFGTSDE-DITSDMFAKD 110 (329)
Q Consensus 85 KFLVQs~~vp~~~t~~-di~~eiWkk~ 110 (329)
||+|+++.++++..+. +....+|++.
T Consensus 81 kf~I~~~~~~~~~~~~~~~~~~~~~~~ 107 (109)
T PF00635_consen 81 KFLIQSIVVPDNATDPKKDFKQIWKNG 107 (109)
T ss_dssp EEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred EEEEEEEEcCCCccchhhhHHHHHhcc
Confidence 9999999998775432 3334677764
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.47 E-value=2.5e-06 Score=68.51 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=61.5
Q ss_pred cceEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEEeeCC--CCcEEEeCCceeeCCCCeEEEEEeeccc
Q 020222 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTS--PKKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (329)
Q Consensus 4 ~LL~I~P~EL~F~~-p~~k~~s~~LtLtN~S~~~VAFKVKTTa--P~rY~VRPn~GiI~Pgesv~V~ItLq~~ 73 (329)
+.|.++|.+|.|-. ..+......++|+|.+..+..|+|+.-. ...|.|.|..|+|.||.+..+.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 56899999999976 3456778999999999999999997654 4689999999999999999999999964
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=96.76 E-value=0.016 Score=48.02 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=72.0
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC---C------CcEEEeCCceeeCCCCeEEEEEeecccccC
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS---P------KKYCVRPNVSIIKPKAISDFTVTMQAQRVA 76 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa---P------~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~ 76 (329)
|.|+|..+.|.. .....+++|+|.++.++.+.+.... . ..|.|.|+.-.|+||++..|.| +... ..
T Consensus 2 i~i~~trii~~~---~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNE---SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEET---TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeC---CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 678899999987 3448899999999999999988765 1 2799999999999999999999 5432 23
Q ss_pred CCCCCCCCeEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCC
Q 020222 77 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (329)
Q Consensus 77 P~d~~~kDKFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~~p 127 (329)
|.+ ...-|.+....+|......+ .+..-.....+.+++.|-+.
T Consensus 77 ~~~--~E~~yrl~~~~iP~~~~~~~------~~~~v~i~~~~~i~v~~rP~ 119 (122)
T PF00345_consen 77 PID--RESLYRLSFREIPPSEAENE------SKNGVQIALRYSIPVFYRPA 119 (122)
T ss_dssp -SS--S-EEEEEEEEEEESCCTTSS------SSSEEEEEEEEEEEEEEEET
T ss_pred CCC--ceEEEEEEEEEEeccccccc------ccceEEEEEEEEEEEEECch
Confidence 333 23455555555554321100 00000234567777766553
No 6
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=92.37 E-value=0.69 Score=46.85 Aligned_cols=63 Identities=11% Similarity=0.316 Sum_probs=53.4
Q ss_pred eeEEeccCCCeeEEEEE-EEcCCCCeEEEEEeeCC------------CCcEEEeCCceeeCCCCeEEEEEeecccc
Q 020222 12 ELKFTFEVKKQSTCVIQ-LGNKSDQCVAFKVKTTS------------PKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (329)
Q Consensus 12 EL~F~~p~~k~~s~~Lt-LtN~S~~~VAFKVKTTa------------P~rY~VRPn~GiI~Pgesv~V~ItLq~~~ 74 (329)
.|.|...........|. |.|.+...|-|..+--. ...|......|+|.||++..|.|++++..
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~ 313 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRK 313 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCC
Confidence 68898877766777777 99999999999966543 35789999999999999999999999964
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=92.32 E-value=1.3 Score=41.54 Aligned_cols=109 Identities=12% Similarity=0.097 Sum_probs=71.6
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCC-----CcEEEeCCceeeCCCCeEEEEEeecccccCCCC
Q 020222 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP-----KKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (329)
Q Consensus 5 LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP-----~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d 79 (329)
-|.+.|..+.|.. +....+++|+|.++.++......... .-|.|.|+.-.|+||+...|.|..... .|.|
T Consensus 25 ~v~l~~tRvi~~~---~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~~--lp~d 99 (230)
T PRK09918 25 GMVPETSVVIVEE---SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKSG--SPLN 99 (230)
T ss_pred eEEEccEEEEEEC---CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC--CCCC
Confidence 3677788888877 34578999999998877666655322 259999999999999999999988752 4443
Q ss_pred CCCCCeEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCCC
Q 020222 80 LQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQ 129 (329)
Q Consensus 80 ~~~kDKFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~~p~~ 129 (329)
. .--|.+....+|+.... +..=......++++-|.+..-
T Consensus 100 r--Es~f~l~v~~IP~~~~~---------~~~l~ia~r~~iklfyRP~~l 138 (230)
T PRK09918 100 T--EHLLRVSFEGVPPKPGG---------KNKVVMPIRQDLPVLIQPAAL 138 (230)
T ss_pred e--eEEEEEEEEEcCCCCCC---------CCEEEEEEEeEEEEEEeCCCC
Confidence 1 23466666666642110 000022355677777765443
No 8
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=91.30 E-value=1.6 Score=41.28 Aligned_cols=86 Identities=20% Similarity=0.250 Sum_probs=62.8
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCC----------cEEEeCCceeeCCCCeEEEEEeecccc
Q 020222 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPK----------KYCVRPNVSIIKPKAISDFTVTMQAQR 74 (329)
Q Consensus 5 LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~----------rY~VRPn~GiI~Pgesv~V~ItLq~~~ 74 (329)
-|.++|..+.|.. +....+++|.|.++.++.........+ -|.|.|+.--|+||+...|.|......
T Consensus 26 ~i~l~~TRvI~~~---~~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~~ 102 (246)
T PRK09926 26 DIVISGTRIIYKS---DQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAST 102 (246)
T ss_pred eEEeCceEEEEeC---CCceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCCC
Confidence 4778888899987 345789999999988877776554322 399999999999999999999987532
Q ss_pred cCCCCCCCCCeEEEEEEEeCC
Q 020222 75 VAPPDLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 75 ~~P~d~~~kDKFLVQs~~vp~ 95 (329)
..|.|.. --|-+....+|+
T Consensus 103 ~lP~DrE--Slf~lnv~eIP~ 121 (246)
T PRK09926 103 ALPKDRE--SVFWFNVLEVPP 121 (246)
T ss_pred CCCCCce--EEEEEEeeecCC
Confidence 3454322 336666666665
No 9
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=91.15 E-value=1.6 Score=41.59 Aligned_cols=86 Identities=21% Similarity=0.225 Sum_probs=60.3
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC------C-----CcEEEeCCceeeCCCCeEEEEEeeccc
Q 020222 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------P-----KKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (329)
Q Consensus 5 LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa------P-----~rY~VRPn~GiI~Pgesv~V~ItLq~~ 73 (329)
-|.++|..+.|... ....+|+|.|.++.++.....+.. | .-|.|.|+.--|+||+...|.|.....
T Consensus 29 ~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~ 105 (253)
T PRK15249 29 SVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNT 105 (253)
T ss_pred EEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCC
Confidence 47788888999763 357799999999887666654322 1 139999999999999999999998752
Q ss_pred ccCCCCCCCCCeEEEEEEEeCC
Q 020222 74 RVAPPDLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 74 ~~~P~d~~~kDKFLVQs~~vp~ 95 (329)
...|.|.. --|-+....+|+
T Consensus 106 ~~lP~DRE--Slf~lnv~eIP~ 125 (253)
T PRK15249 106 KKLPQDRE--SVFWFNVLQVPP 125 (253)
T ss_pred CCCCCCce--EEEEEEeeecCC
Confidence 23454422 235555555554
No 10
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=89.02 E-value=3.5 Score=38.97 Aligned_cols=86 Identities=15% Similarity=0.266 Sum_probs=60.8
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC------C----CcEEEeCCceeeCCCCeEEEEEeecccc
Q 020222 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------P----KKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (329)
Q Consensus 5 LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa------P----~rY~VRPn~GiI~Pgesv~V~ItLq~~~ 74 (329)
-|.+.++.+.|.. +....+++|.|.++.++.-...... | .-|.|.|+.-.|+||+...|.|......
T Consensus 11 ~v~l~~TRvI~~~---~~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~ 87 (233)
T PRK15246 11 AVNIDRTRIIFAS---DDVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQ 87 (233)
T ss_pred EEEECceEEEEcC---CCceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCC
Confidence 3678888899977 3457899999999886544443221 1 1499999999999999999999987533
Q ss_pred cCCCCCCCCCeEEEEEEEeCC
Q 020222 75 VAPPDLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 75 ~~P~d~~~kDKFLVQs~~vp~ 95 (329)
..|.|. .--|-+....+|+
T Consensus 88 ~LP~DR--ESlf~lnv~~IP~ 106 (233)
T PRK15246 88 QLATDR--ESLFWLNIYQIPP 106 (233)
T ss_pred CCCCCc--eEEEEEEEEEcCC
Confidence 345431 2346666666665
No 11
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=88.93 E-value=1.8 Score=30.60 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=34.8
Q ss_pred EEEEcCCCCeEE-EEEeeCCCCcEEEeCCceeeCCCCeEEEEEee
Q 020222 27 IQLGNKSDQCVA-FKVKTTSPKKYCVRPNVSIIKPKAISDFTVTM 70 (329)
Q Consensus 27 LtLtN~S~~~VA-FKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItL 70 (329)
++++|.++.++. .+|+| +=+...+......|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 678999987654 55655 56888888999999999999999863
No 12
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=88.63 E-value=3.3 Score=39.25 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=59.4
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeC------------CCCcEEEeCCceeeCCCCeEEEEEeecc
Q 020222 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT------------SPKKYCVRPNVSIIKPKAISDFTVTMQA 72 (329)
Q Consensus 5 LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTT------------aP~rY~VRPn~GiI~Pgesv~V~ItLq~ 72 (329)
-|.++++.+.|.. +....+++|.|.++.+..-..... ...-|.|.|+.--|+||+...+.|....
T Consensus 27 ~v~l~~TRvIy~~---~~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~ 103 (236)
T PRK11385 27 GVVVGGTRFIFPA---DRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTE 103 (236)
T ss_pred eEEeCceEEEEcC---CCceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECC
Confidence 3567777888876 345789999999988644333211 1134999999999999999999998875
Q ss_pred cccCCCCCCCCCeEEEEEEEeCC
Q 020222 73 QRVAPPDLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 73 ~~~~P~d~~~kDKFLVQs~~vp~ 95 (329)
....|.| -..-|-+....+|+
T Consensus 104 ~~~LP~D--RESlf~lnv~~IPp 124 (236)
T PRK11385 104 SDILPVD--RETLFELSIASVPS 124 (236)
T ss_pred CCCCCCC--ceEEEEEEEEecCC
Confidence 3234544 22445566666665
No 13
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=87.45 E-value=5.2 Score=37.50 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=58.7
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC-------CCcEEEeCCceeeCCCCeEEEEEeecccccCC
Q 020222 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAP 77 (329)
Q Consensus 5 LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa-------P~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P 77 (329)
-|.++++.+.|... ....+++|.|.++.++.-...... ..-|.|.|+.-.|+||+...|.|..... ..|
T Consensus 20 ~i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~LP 95 (226)
T PRK15295 20 SIVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PLP 95 (226)
T ss_pred cEEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 46778888888773 347899999998876443332221 1259999999999999999999987642 345
Q ss_pred CCCCCCCeEEEEEEEeCC
Q 020222 78 PDLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 78 ~d~~~kDKFLVQs~~vp~ 95 (329)
.|. .--|-+....+|+
T Consensus 96 ~Dr--Eslf~lnv~~IP~ 111 (226)
T PRK15295 96 ADR--ESMYWLNIKGIPS 111 (226)
T ss_pred CCc--eEEEEEEEEEcCC
Confidence 431 2335566666665
No 14
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=87.32 E-value=5.3 Score=37.36 Aligned_cols=85 Identities=12% Similarity=0.143 Sum_probs=60.7
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC--------CCcEEEeCCceeeCCCCeEEEEEeecccccC
Q 020222 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS--------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVA 76 (329)
Q Consensus 5 LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa--------P~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~ 76 (329)
-|.++|+.+.|... ....+|+|.|.++.++.-...+.. ..-|.|.|+.-.|+||+...|.|..... ..
T Consensus 23 ~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~l 98 (227)
T PRK15299 23 GINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-NL 98 (227)
T ss_pred eEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-CC
Confidence 46788888899774 447899999998876655544322 1249999999999999999999987652 24
Q ss_pred CCCCCCCCeEEEEEEEeCC
Q 020222 77 PPDLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 77 P~d~~~kDKFLVQs~~vp~ 95 (329)
|.| ...-|-+....+|+
T Consensus 99 P~D--rEslf~lnv~eIP~ 115 (227)
T PRK15299 99 PED--RESLYWLDIKSIPS 115 (227)
T ss_pred CCc--ceEEEEEEeEecCC
Confidence 544 22346666666665
No 15
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=87.23 E-value=2.4 Score=35.01 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=36.0
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCCcEEE-eCCce-eeCCCCeEEEEEeecccc
Q 020222 24 TCVIQLGNKSDQCVAFKVKTTSPKKYCV-RPNVS-IIKPKAISDFTVTMQAQR 74 (329)
Q Consensus 24 s~~LtLtN~S~~~VAFKVKTTaP~rY~V-RPn~G-iI~Pgesv~V~ItLq~~~ 74 (329)
..+|+|.|.+.++..|.|+...+..+.+ .|... -|.||++..+.|.+....
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-G
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECH
Confidence 6799999999999999999998888888 66455 499999999888876543
No 16
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=86.47 E-value=6.2 Score=37.26 Aligned_cols=84 Identities=13% Similarity=0.155 Sum_probs=58.7
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC------CCcEEEeCCceeeCCCCeEEEEEeecccccCCCC
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa------P~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d 79 (329)
|.++++.+.|.. +....+++|.|.++.+..-...... ..-|.|.|+.-.|+||+...|.|..... ..|.|
T Consensus 24 v~l~~TRvIy~~---~~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDE---GRKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPKD 99 (229)
T ss_pred EEECceEEEEcC---CCceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 667777788876 3447899999999887444433311 1249999999999999999999998753 34544
Q ss_pred CCCCCeEEEEEEEeCC
Q 020222 80 LQCKDKFLIQGIVVPF 95 (329)
Q Consensus 80 ~~~kDKFLVQs~~vp~ 95 (329)
. .--|-+....+|+
T Consensus 100 R--ESlf~lnv~~IP~ 113 (229)
T PRK15211 100 R--ESLFWLNVQEIPP 113 (229)
T ss_pred c--eEEEEEEEEEcCC
Confidence 2 2345566666665
No 17
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=85.29 E-value=7.3 Score=37.12 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=60.4
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCC-CeEEEEEeeCC---C----CcEEEeCCceeeCCCCeEEEEEeecccccCC
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTS---P----KKYCVRPNVSIIKPKAISDFTVTMQAQRVAP 77 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~-~~VAFKVKTTa---P----~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P 77 (329)
|.++++.+.|+. +....+++|+|.++ .+..-...... . .-|.|-|+.-.|+||+...|.|........|
T Consensus 39 v~l~~TRvIy~~---~~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLS---NNPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 677778888977 34477999999986 46666655541 1 1499999999999999999999987543345
Q ss_pred CCCCCCCeEEEEEEEeCC
Q 020222 78 PDLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 78 ~d~~~kDKFLVQs~~vp~ 95 (329)
.|. .--|-+....+|+
T Consensus 116 ~DR--ESlf~lnv~eIPp 131 (243)
T PRK15290 116 DDR--ESVFWLNIKNIPP 131 (243)
T ss_pred CCe--eEEEEEEEEEcCC
Confidence 442 2445566666665
No 18
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=83.85 E-value=14 Score=35.15 Aligned_cols=82 Identities=13% Similarity=0.253 Sum_probs=58.5
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeC----------C----CCcEEEeCCceeeCCCCeEEEEEeec
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT----------S----PKKYCVRPNVSIIKPKAISDFTVTMQ 71 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTT----------a----P~rY~VRPn~GiI~Pgesv~V~ItLq 71 (329)
|.++.+.+.|+. +....+++|.|.++.+ |=|++. . ..-|.|.|+.-.|+||+...+.|...
T Consensus 24 i~l~~TRvIy~~---~~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHA---GAPALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcC---CCceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 566777788877 3447899999999876 555552 1 11399999999999999999999987
Q ss_pred ccccCCCCCCCCCeEEEEEEEeCC
Q 020222 72 AQRVAPPDLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 72 ~~~~~P~d~~~kDKFLVQs~~vp~ 95 (329)
.. ..|.| -.--|-+....+|+
T Consensus 99 ~~-~LP~D--RESlf~lnv~~IPp 119 (234)
T PRK15192 99 GA-PLPAD--RESLFTLSIAAIPS 119 (234)
T ss_pred CC-CCCCc--ceEEEEEEEEecCC
Confidence 53 34544 22346666666665
No 19
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=83.80 E-value=8.9 Score=35.94 Aligned_cols=85 Identities=11% Similarity=0.187 Sum_probs=57.3
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCC--eEEEEEeeCCC----CcEEEeCCceeeCCCCeEEEEEeecccccCCC
Q 020222 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQ--CVAFKVKTTSP----KKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (329)
Q Consensus 5 LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~--~VAFKVKTTaP----~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~ 78 (329)
-|.+.|..+.|... ....+++|.|.+++ .+.+..-.... .-|.|.|+.-.|+||+...|.|..... ..|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLPQ 97 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCCC
Confidence 47788888999873 44789999999853 33333222211 239999999999999999999987642 2454
Q ss_pred CCCCCCeEEEEEEEeCC
Q 020222 79 DLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 79 d~~~kDKFLVQs~~vp~ 95 (329)
|. .--|.+-...+|+
T Consensus 98 Dr--ESlf~lnv~eIP~ 112 (228)
T PRK15208 98 DR--ESVYWINVKAIPA 112 (228)
T ss_pred Ce--eEEEEEEEEEcCC
Confidence 32 2335555556664
No 20
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=80.94 E-value=14 Score=34.94 Aligned_cols=84 Identities=12% Similarity=0.254 Sum_probs=57.3
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEEee-C-C---CCcEEEeCCceeeCCCCeEEEEEeecccccCCCC
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKT-T-S---PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~-~VAFKVKT-T-a---P~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d 79 (329)
+.++++.+.|... ....+++|+|.+++ +..-.... + . ..-|.|.|+.--|+||+...+.|..... ..|.|
T Consensus 29 i~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP~D 104 (228)
T PRK15188 29 IALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLPTD 104 (228)
T ss_pred EEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6677788888773 44789999999854 33322222 1 1 1249999999999999999999988753 34544
Q ss_pred CCCCCeEEEEEEEeCC
Q 020222 80 LQCKDKFLIQGIVVPF 95 (329)
Q Consensus 80 ~~~kDKFLVQs~~vp~ 95 (329)
-.--|-+....+|+
T Consensus 105 --RESlf~lnv~~IP~ 118 (228)
T PRK15188 105 --RESVFYLNSKAIPS 118 (228)
T ss_pred --ceEEEEEEEEecCC
Confidence 22445566666665
No 21
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.89 E-value=22 Score=33.55 Aligned_cols=84 Identities=13% Similarity=0.183 Sum_probs=64.1
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC-------CCcEEEeCCceeeCCCCeEEEEEeecccccCCC
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa-------P~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~ 78 (329)
+.+.+..+.|+.. .....++|.|.++.++...+..-. ..-|.|.|+.-.|+||+...|.|...+. ..|.
T Consensus 29 v~i~~TRiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP~ 104 (235)
T COG3121 29 VVLGGTRIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLPA 104 (235)
T ss_pred EEecceEEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCCC
Confidence 5667777888774 447799999988899998866542 4469999999999999999999999986 3555
Q ss_pred CCCCCCeEEEEEEEeCC
Q 020222 79 DLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 79 d~~~kDKFLVQs~~vp~ 95 (329)
| -..-|-+..-.+|+
T Consensus 105 d--rEslf~lnv~eIPp 119 (235)
T COG3121 105 D--RESLFRLNVDEIPP 119 (235)
T ss_pred C--ceeEEEEEeeecCC
Confidence 4 23456666666665
No 22
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=80.25 E-value=16 Score=34.71 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=58.2
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCC-CeEEEEEeeCC----C-CcEEEeCCceeeCCCCeEEEEEeecc--cccC
Q 020222 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTS----P-KKYCVRPNVSIIKPKAISDFTVTMQA--QRVA 76 (329)
Q Consensus 5 LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~-~~VAFKVKTTa----P-~rY~VRPn~GiI~Pgesv~V~ItLq~--~~~~ 76 (329)
-+.++++.+.|.. +....+++|.|.++ .++.-...... + .-|.|.|+.--|+||+...|.|.... ....
T Consensus 17 ~v~l~~TRvIy~~---~~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~l 93 (239)
T PRK15254 17 AVNVDRTRIIMDA---PQKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKL 93 (239)
T ss_pred eEEECceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCC
Confidence 3667778888977 34578999999975 45444433311 1 24999999999999999999998763 2334
Q ss_pred CCCCCCCCeEEEEEEEeCC
Q 020222 77 PPDLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 77 P~d~~~kDKFLVQs~~vp~ 95 (329)
|.|. ..-|-+....+|+
T Consensus 94 P~DR--ESlf~lnv~~IP~ 110 (239)
T PRK15254 94 PQDR--ETLFWFNVRGVPP 110 (239)
T ss_pred CCCc--eEEEEEEEEEcCC
Confidence 5442 2345555555664
No 23
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=78.81 E-value=19 Score=33.90 Aligned_cols=85 Identities=12% Similarity=0.207 Sum_probs=56.2
Q ss_pred ceEEeCCeeEEeccCCCeeEEEEEEEcCCCC--eEEEEEeeCC----CCcEEEeCCceeeCCCCeEEEEEeecccccCCC
Q 020222 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQ--CVAFKVKTTS----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (329)
Q Consensus 5 LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~--~VAFKVKTTa----P~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~ 78 (329)
-|.++++.+.|... ...++++|.|.+++ .+.+..-.+. ..-|.|.|+.--|+||+...|.|..... ..|.
T Consensus 26 gi~i~~TRvIy~~~---~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~ 101 (229)
T PRK15195 26 GIALGATRVIYPAD---AKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAA 101 (229)
T ss_pred eEEECCeEEEEeCC---CceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 36778888888763 33689999999854 4433211111 1259999999999999999999988642 2344
Q ss_pred CCCCCCeEEEEEEEeCC
Q 020222 79 DLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 79 d~~~kDKFLVQs~~vp~ 95 (329)
|. ..-|-+....+|+
T Consensus 102 Dr--ESlf~Lnv~eIP~ 116 (229)
T PRK15195 102 DR--ESLFWMNVKAIPS 116 (229)
T ss_pred Ce--eEEEEEEeeecCC
Confidence 32 2335555555554
No 24
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=76.84 E-value=7.5 Score=31.86 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=32.9
Q ss_pred CeeEEEEEEEcCCCCeEEEEEeeC-----C---CCcEEE-e------------CCceeeCCCCeEEEEEeeccc
Q 020222 21 KQSTCVIQLGNKSDQCVAFKVKTT-----S---PKKYCV-R------------PNVSIIKPKAISDFTVTMQAQ 73 (329)
Q Consensus 21 k~~s~~LtLtN~S~~~VAFKVKTT-----a---P~rY~V-R------------Pn~GiI~Pgesv~V~ItLq~~ 73 (329)
+..+.+|+|+|.+++.+.|++.-. . ...|.. . |..=.|.||++.+|.|++.+.
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 446789999999999999997665 1 122221 1 222358899999999888874
No 25
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=75.93 E-value=41 Score=31.71 Aligned_cols=84 Identities=13% Similarity=0.194 Sum_probs=56.1
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCC----------CcEEEeCCceeeCCCCeEEEEEeeccccc
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP----------KKYCVRPNVSIIKPKAISDFTVTMQAQRV 75 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP----------~rY~VRPn~GiI~Pgesv~V~ItLq~~~~ 75 (329)
|.++-+-+.|+. +....+++|.|.++.+..-....... .-|.|.|+.-.|+||+...+.|.... ..
T Consensus 20 i~l~~TRvIy~~---~~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~-~~ 95 (226)
T PRK15218 20 IYIYGTRIIYPA---QKKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLA-NN 95 (226)
T ss_pred EEeCceEEEEcC---CCcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC-CC
Confidence 344445677766 34477999999998763333322221 14999999999999999999999765 33
Q ss_pred CCCCCCCCCeEEEEEEEeCC
Q 020222 76 APPDLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 76 ~P~d~~~kDKFLVQs~~vp~ 95 (329)
.|.|. .--|-+....+|+
T Consensus 96 LP~DR--ESlfwlnv~~IPp 113 (226)
T PRK15218 96 LPGDR--ESLFYLNVLDIPP 113 (226)
T ss_pred CCcce--eEEEEEEEEEcCC
Confidence 55442 2346666666665
No 26
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=73.01 E-value=49 Score=31.53 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=55.4
Q ss_pred EEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEee----CC---CCcEEEeCCceeeCCCCeEEEEEeecccccCCCC
Q 020222 7 DIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKT----TS---PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (329)
Q Consensus 7 ~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKT----Ta---P~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d 79 (329)
.++-+-+.|+. +....+++|.|.++.+ |-|++ .. ..-|.|.|+.-.|+|++...+.|.... ...|.|
T Consensus 31 ~l~~TRvIy~~---~~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~-~~LP~D 104 (237)
T PRK15224 31 KLGATRVIYHA---GTAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTG-GDMPTD 104 (237)
T ss_pred EeCceEEEEeC---CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECC-CCCCCc
Confidence 34445677766 3447799999998776 55555 11 124999999999999999999999874 335654
Q ss_pred CCCCCeEEEEEEEeCC
Q 020222 80 LQCKDKFLIQGIVVPF 95 (329)
Q Consensus 80 ~~~kDKFLVQs~~vp~ 95 (329)
. .--|-+....+|+
T Consensus 105 R--ESlFwlnv~~IPp 118 (237)
T PRK15224 105 R--ETLQWVCIKAVPP 118 (237)
T ss_pred e--eEEEEEEEEEcCC
Confidence 2 2345555566665
No 27
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=71.16 E-value=60 Score=31.32 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=55.1
Q ss_pred EEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEEeeCCC------CcEEEeCCceeeCCCCeEEEEEeecc-cccCCC
Q 020222 7 DIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTSP------KKYCVRPNVSIIKPKAISDFTVTMQA-QRVAPP 78 (329)
Q Consensus 7 ~I~P~EL~F~~p~~k~~s~~LtLtN~S~~-~VAFKVKTTaP------~rY~VRPn~GiI~Pgesv~V~ItLq~-~~~~P~ 78 (329)
.++-+-+.|.. +....+|+|.|.++. +..-....... .-|.|.|+.--|+||+...|.|...+ ....|.
T Consensus 29 ~l~~TRvIy~e---~~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP~ 105 (257)
T PRK15274 29 VPDRTRVIFNG---NENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQ 105 (257)
T ss_pred EeCceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCC
Confidence 33334677876 344779999999865 54433322111 24999999999999999999999775 234554
Q ss_pred CCCCCCeEEEEEEEeCC
Q 020222 79 DLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 79 d~~~kDKFLVQs~~vp~ 95 (329)
|. .--|-+....+|+
T Consensus 106 DR--ESlFwlNv~eIPp 120 (257)
T PRK15274 106 DR--ESLFYFNVREIPP 120 (257)
T ss_pred ce--eEEEEEEEEEcCC
Confidence 42 2345555566665
No 28
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=70.12 E-value=42 Score=32.20 Aligned_cols=79 Identities=11% Similarity=0.131 Sum_probs=53.0
Q ss_pred eCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEee--C--C---CCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCC
Q 020222 9 QPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKT--T--S---PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQ 81 (329)
Q Consensus 9 ~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKT--T--a---P~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~ 81 (329)
+-+-+.|... ....+++|.|.++.+ |-|++ . . ..-|.|.|+.-.|+|++...+.|..... ..|.|..
T Consensus 45 ~~TRvIy~~~---~~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~DRE 118 (246)
T PRK15233 45 GTTRVIYKED---APSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNKNEE 118 (246)
T ss_pred CceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCcCce
Confidence 3345666552 357799999987776 44443 1 1 1249999999999999999999998753 3454421
Q ss_pred CCCeEEEEEEEeCC
Q 020222 82 CKDKFLIQGIVVPF 95 (329)
Q Consensus 82 ~kDKFLVQs~~vp~ 95 (329)
--|-+....+|+
T Consensus 119 --Slfwlnv~~IPp 130 (246)
T PRK15233 119 --SLYWLCVKGVPP 130 (246)
T ss_pred --EEEEEEEEEcCC
Confidence 236666666665
No 29
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=68.76 E-value=74 Score=30.36 Aligned_cols=83 Identities=14% Similarity=0.247 Sum_probs=54.8
Q ss_pred EEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC------C----CcEEEeCCceeeCCCCeEEEEEeecccccC
Q 020222 7 DIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------P----KKYCVRPNVSIIKPKAISDFTVTMQAQRVA 76 (329)
Q Consensus 7 ~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa------P----~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~ 76 (329)
.++-+-+.|+. +....+++|.|.++.+..-...... | .-|.|.|+.-.|+|++...|.|.... ...
T Consensus 36 ~l~~TRvIy~~---~~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~-~~L 111 (242)
T PRK15253 36 VIYGTRVIYPA---EKKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMP-NSL 111 (242)
T ss_pred EeCceEEEEeC---CCceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC-CCC
Confidence 33444577766 3447799999999876433332221 1 24999999999999999999998764 335
Q ss_pred CCCCCCCCeEEEEEEEeCC
Q 020222 77 PPDLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 77 P~d~~~kDKFLVQs~~vp~ 95 (329)
|.|- .--|-+....+|+
T Consensus 112 P~DR--ESlfwlnv~~IPp 128 (242)
T PRK15253 112 PDNK--ESLFYLNVLDIPP 128 (242)
T ss_pred Ccce--eEEEEEEEEEcCC
Confidence 5441 2345556666665
No 30
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=65.75 E-value=26 Score=35.90 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=39.4
Q ss_pred CCeeEEEEEEEcCCCCeEEEEEeeCC------C-CcEEEeCCce--------------eeCCCCeEEEEEeeccc
Q 020222 20 KKQSTCVIQLGNKSDQCVAFKVKTTS------P-KKYCVRPNVS--------------IIKPKAISDFTVTMQAQ 73 (329)
Q Consensus 20 ~k~~s~~LtLtN~S~~~VAFKVKTTa------P-~rY~VRPn~G--------------iI~Pgesv~V~ItLq~~ 73 (329)
.+..+-+++++|.++++|-.+==+|+ | ..|...|.+. -|.||++.+|.|..|.-
T Consensus 281 GR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA 355 (399)
T TIGR03079 281 GRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDA 355 (399)
T ss_pred CcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehh
Confidence 46778899999999999988744444 3 3444444432 28999999999988764
No 31
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=62.69 E-value=15 Score=28.15 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=31.8
Q ss_pred CeeEEEEEEEcCCCCeE-EEEEeeCCCCcEE--EeCCc-eeeCCCCeEEEEEeecccc
Q 020222 21 KQSTCVIQLGNKSDQCV-AFKVKTTSPKKYC--VRPNV-SIIKPKAISDFTVTMQAQR 74 (329)
Q Consensus 21 k~~s~~LtLtN~S~~~V-AFKVKTTaP~rY~--VRPn~-GiI~Pgesv~V~ItLq~~~ 74 (329)
....-.++++|....++ ..++.-+.|..+. ..|.. +-|.||++..+.+.+.+..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 45567899999986542 3555555688887 55543 4799999999999998754
No 32
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=62.63 E-value=1.2e+02 Score=29.05 Aligned_cols=83 Identities=18% Similarity=0.160 Sum_probs=53.6
Q ss_pred EeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEEeeC--CCC----cEEEeCCceeeCCCCeEEEEEeecc-cccCCCC
Q 020222 8 IQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTT--SPK----KYCVRPNVSIIKPKAISDFTVTMQA-QRVAPPD 79 (329)
Q Consensus 8 I~P~EL~F~~p~~k~~s~~LtLtN~S~~-~VAFKVKTT--aP~----rY~VRPn~GiI~Pgesv~V~ItLq~-~~~~P~d 79 (329)
++-+-+.|+. +....+++|.|.++. +..-..... ..+ -|.|-|+.-.|+||+...+.|...+ ....|.|
T Consensus 29 l~~TRVIy~~---~~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~D 105 (250)
T PRK15285 29 PDRTRLVFRG---EDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQD 105 (250)
T ss_pred eCccEEEEcC---CCceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCC
Confidence 3334677876 344779999999865 433332221 111 3999999999999999999999775 2334544
Q ss_pred CCCCCeEEEEEEEeCC
Q 020222 80 LQCKDKFLIQGIVVPF 95 (329)
Q Consensus 80 ~~~kDKFLVQs~~vp~ 95 (329)
. .--|-+....+|+
T Consensus 106 R--ESlfwlnv~~IPp 119 (250)
T PRK15285 106 R--ETLFYYNVREIPP 119 (250)
T ss_pred c--eEEEEEEEEEcCC
Confidence 2 2345555556665
No 33
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=60.54 E-value=55 Score=25.91 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=39.4
Q ss_pred CCeeEEEEEEEcCCCCeEE-EEEeeCCCCcEEEe--CCc-eeeCCCCeEEEEEeecc
Q 020222 20 KKQSTCVIQLGNKSDQCVA-FKVKTTSPKKYCVR--PNV-SIIKPKAISDFTVTMQA 72 (329)
Q Consensus 20 ~k~~s~~LtLtN~S~~~VA-FKVKTTaP~rY~VR--Pn~-GiI~Pgesv~V~ItLq~ 72 (329)
+....-.+...|.+..++. |.+.-..|+-+.++ |.. ..|.||+.+.-.+.+..
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~ 73 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVEN 73 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEEC
Confidence 3467789999999987776 88888888877766 554 47999887666666554
No 34
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=59.55 E-value=93 Score=25.16 Aligned_cols=53 Identities=25% Similarity=0.425 Sum_probs=34.5
Q ss_pred CCeeEEEEEEEcCCCCeEE-EEEeeCCCCcE--EEeCC-ceeeCCCCeEEEEEeecc
Q 020222 20 KKQSTCVIQLGNKSDQCVA-FKVKTTSPKKY--CVRPN-VSIIKPKAISDFTVTMQA 72 (329)
Q Consensus 20 ~k~~s~~LtLtN~S~~~VA-FKVKTTaP~rY--~VRPn-~GiI~Pgesv~V~ItLq~ 72 (329)
.....-.++..|.+..++. |.+.-..|+.| .+.|. ...|.|+..+.-.+.+..
T Consensus 23 ~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 23 PNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp TTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 5677889999999987776 77666566654 45565 569999888775554443
No 35
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=58.81 E-value=40 Score=27.14 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=40.3
Q ss_pred CCCeeEEEEEEEcCCCCe--------EEEEEeeCCCC--cEEEeCCceeeCCCCeEEEEEeeccccc
Q 020222 19 VKKQSTCVIQLGNKSDQC--------VAFKVKTTSPK--KYCVRPNVSIIKPKAISDFTVTMQAQRV 75 (329)
Q Consensus 19 ~~k~~s~~LtLtN~S~~~--------VAFKVKTTaP~--rY~VRPn~GiI~Pgesv~V~ItLq~~~~ 75 (329)
.++.....++++|+++.+ -++-|--|.-. .....-..+-|.||++..+.+.+.+..+
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQY 79 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEceeE
Confidence 467789999999999877 45555544432 2567788999999999999999988654
No 36
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=56.96 E-value=10 Score=28.26 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=27.4
Q ss_pred EEEEcCCCCeEEEE-EeeCCCC-cEEEeCCceeeCCCCeEEEEEe
Q 020222 27 IQLGNKSDQCVAFK-VKTTSPK-KYCVRPNVSIIKPKAISDFTVT 69 (329)
Q Consensus 27 LtLtN~S~~~VAFK-VKTTaP~-rY~VRPn~GiI~Pgesv~V~It 69 (329)
|++.|+|..+|.|- ++....+ .+.+ ...+.|.|+++..+.+.
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~-~~~~mi~P~s~~~~~~~ 44 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKI-DNSGMIAPFSSKSFPLP 44 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEEC-CCETEE-TTEEEEEETS
T ss_pred CEEECCCCcEEEEEeeeeccccccccc-CCceEECCCCceEEecc
Confidence 68999999999987 4444333 3333 44449999999988764
No 37
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=55.66 E-value=46 Score=26.27 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=32.1
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCCcEE-EeCCceeeCCCCeEEEEEee
Q 020222 24 TCVIQLGNKSDQCVAFKVKTTSPKKYC-VRPNVSIIKPKAISDFTVTM 70 (329)
Q Consensus 24 s~~LtLtN~S~~~VAFKVKTTaP~rY~-VRPn~GiI~Pgesv~V~ItL 70 (329)
.-.|+|.|.+...+.|.|.... |. -.|-.=.|.||++..+.+-+
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~~---y~~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDNA---YGGGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeCC---cCCCCCEEEEECCCCEEEEEEee
Confidence 6699999999999999998722 22 23344455668888888766
No 38
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=51.01 E-value=14 Score=28.47 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcceeecccc
Q 020222 174 VFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTT 214 (329)
Q Consensus 174 ~~e~~~~~~el~~l~~~~~~en~~l~~e~~~~r~~~~~~~~ 214 (329)
++|.+-|+.+|.+|.. .|++|..|+-.||..+..++.
T Consensus 13 rEEVevLK~~I~eL~~----~n~~Le~EN~~Lk~~~~pe~l 49 (59)
T PF01166_consen 13 REEVEVLKEQIAELEE----RNSQLEEENNLLKQNASPEQL 49 (59)
T ss_dssp TTSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCSSSSS
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCHHHH
Confidence 7888899999999999 999999999999987766553
No 39
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=50.94 E-value=14 Score=31.47 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcceee
Q 020222 174 VFETAKFADELTETKDLQWLENAKERDESRAAKDVQM 210 (329)
Q Consensus 174 ~~e~~~~~~el~~l~~~~~~en~~l~~e~~~~r~~~~ 210 (329)
-.++.+|+.++.++-+ ||..|+-|+-+||+.--
T Consensus 21 ~~el~~LK~~~~el~E----EN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 21 LKELGALKKQLAELLE----ENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 5788888888998888 99999999999997543
No 40
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=50.08 E-value=1.8e+02 Score=27.78 Aligned_cols=87 Identities=11% Similarity=0.102 Sum_probs=62.6
Q ss_pred CCcceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEee---CC---------------CCcEEEeCCceeeCCCCe
Q 020222 2 AEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKT---TS---------------PKKYCVRPNVSIIKPKAI 63 (329)
Q Consensus 2 ~s~LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKT---Ta---------------P~rY~VRPn~GiI~Pges 63 (329)
++.-|.|.|-.+.+... .+....++|+|.++.+..++|.. ++ ...-.+.|+.-.|.||++
T Consensus 14 aaa~l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~ 91 (234)
T PRK15308 14 ARANMLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTT 91 (234)
T ss_pred hhceEEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCe
Confidence 34557889988888652 25578999999999988777543 12 124678899999999999
Q ss_pred EEEEEeecccccCCCCCCCCCeEEEEEEEeCCC
Q 020222 64 SDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFG 96 (329)
Q Consensus 64 v~V~ItLq~~~~~P~d~~~kDKFLVQs~~vp~~ 96 (329)
-.|.+..... + ....-|.|...+++..
T Consensus 92 q~IRli~lg~---~---~kE~~YRl~~~pvp~~ 118 (234)
T PRK15308 92 RTVRVISLQA---P---EREEAWRVYFEPVAEL 118 (234)
T ss_pred EEEEEEEcCC---C---CcEEEEEEEEEecCCc
Confidence 9999876653 1 1245677888888753
No 41
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=47.15 E-value=80 Score=25.34 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=33.2
Q ss_pred CeeEEEEEEEcCCCCeEE-----EEEeeCCCCcEEEeC---------CceeeCCCCeEEEEEeeccc
Q 020222 21 KQSTCVIQLGNKSDQCVA-----FKVKTTSPKKYCVRP---------NVSIIKPKAISDFTVTMQAQ 73 (329)
Q Consensus 21 k~~s~~LtLtN~S~~~VA-----FKVKTTaP~rY~VRP---------n~GiI~Pgesv~V~ItLq~~ 73 (329)
+-..-.++++|.++.++. |++.+..-..|...+ ..+-|.||+++...|.+...
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp 102 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVP 102 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEES
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEEC
Confidence 455678999999988776 678877767777554 34789999999988887653
No 42
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=44.80 E-value=1.2e+02 Score=31.29 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=40.9
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcE----------------------EEeCCceeeCCCCe
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKY----------------------CVRPNVSIIKPKAI 63 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY----------------------~VRPn~GiI~Pges 63 (329)
+.+....-.|.-| ++...-+|+++|.++.+|-..==+|+.-+| .|.|+ +-|.||++
T Consensus 249 V~~~v~~A~Y~vp-gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRVP-GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGET 326 (381)
T ss_dssp EEEEEEEEEEESS-SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-E
T ss_pred eEEEEeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCce
Confidence 4444445566654 568899999999999999887444444443 23343 35899999
Q ss_pred EEEEEeecc
Q 020222 64 SDFTVTMQA 72 (329)
Q Consensus 64 v~V~ItLq~ 72 (329)
.++.|..|.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999875
No 43
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=41.20 E-value=24 Score=29.74 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhccee
Q 020222 174 VFETAKFADELTETKDLQWLENAKERDESRAAKDVQ 209 (329)
Q Consensus 174 ~~e~~~~~~el~~l~~~~~~en~~l~~e~~~~r~~~ 209 (329)
.+++.+++.++.++=. ||..|+-|+=+||+.-
T Consensus 21 ~~~~~~LK~~~~~l~E----EN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 21 LEELEELKKQLQELLE----ENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 5677777777777777 9999999999999763
No 44
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=38.90 E-value=35 Score=30.78 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=26.2
Q ss_pred EEEeeCCCCcEEEeCCcee--eCCCCeEEEEEeecc
Q 020222 39 FKVKTTSPKKYCVRPNVSI--IKPKAISDFTVTMQA 72 (329)
Q Consensus 39 FKVKTTaP~rY~VRPn~Gi--I~Pgesv~V~ItLq~ 72 (329)
|+|.--+-+.|++.|.-|+ |.||++..|.+.-..
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 7788888889999999997 899999999998554
No 45
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=37.17 E-value=1.4e+02 Score=23.63 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=13.2
Q ss_pred EEEEEEEcCCCCeEEEEEee
Q 020222 24 TCVIQLGNKSDQCVAFKVKT 43 (329)
Q Consensus 24 s~~LtLtN~S~~~VAFKVKT 43 (329)
.-.|+|+|+++++|-+..-|
T Consensus 3 ~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEeCCCCeEEEEeCC
Confidence 45778888888888777755
No 46
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=36.88 E-value=27 Score=30.30 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhh
Q 020222 177 TAKFADELTETKDLQWLENAKERD 200 (329)
Q Consensus 177 ~~~~~~el~~l~~~~~~en~~l~~ 200 (329)
-++|++||+.|+= ||++||.
T Consensus 5 ~EeLaaeL~kLqm----ENk~LKk 24 (118)
T PF05812_consen 5 MEELAAELQKLQM----ENKALKK 24 (118)
T ss_dssp HHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHH
Confidence 4688999999998 9999986
No 47
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=34.28 E-value=4.3e+02 Score=27.49 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=38.7
Q ss_pred eeEEEEEEEcCCCCeEEEEEeeCCCCcEEEe-C-CceeeCCCCeEEEEEeeccc
Q 020222 22 QSTCVIQLGNKSDQCVAFKVKTTSPKKYCVR-P-NVSIIKPKAISDFTVTMQAQ 73 (329)
Q Consensus 22 ~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VR-P-n~GiI~Pgesv~V~ItLq~~ 73 (329)
.-..+++|.|.+.++..|.++........+. + +.=.|+||+..++.|++...
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEec
Confidence 3477999999999988888887764443333 2 34489999999888887654
No 48
>PHA03162 hypothetical protein; Provisional
Probab=33.48 E-value=32 Score=30.47 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhh
Q 020222 177 TAKFADELTETKDLQWLENAKERD 200 (329)
Q Consensus 177 ~~~~~~el~~l~~~~~~en~~l~~ 200 (329)
-++|++||+.|+= ||++||.
T Consensus 15 mEeLaaeL~kLqm----ENK~LKk 34 (135)
T PHA03162 15 MEDLAAEIAKLQL----ENKALKK 34 (135)
T ss_pred HHHHHHHHHHHHH----HHHHHHH
Confidence 3678899999998 9999985
No 49
>PHA03155 hypothetical protein; Provisional
Probab=33.05 E-value=33 Score=29.63 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=17.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhh
Q 020222 178 AKFADELTETKDLQWLENAKERD 200 (329)
Q Consensus 178 ~~~~~el~~l~~~~~~en~~l~~ 200 (329)
++|++||+.|+= ||++||.
T Consensus 11 EeLaaeL~kL~~----ENK~LKk 29 (115)
T PHA03155 11 EELEKELQKLKI----ENKALKK 29 (115)
T ss_pred HHHHHHHHHHHH----HHHHHHH
Confidence 678899999998 9999986
No 50
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=32.69 E-value=93 Score=25.19 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=33.2
Q ss_pred eeEEEEEEEcCCCCeEE-EEEee-----------------CCCCcEEEeCCc--eeeCCCCeEEEEEeeccc
Q 020222 22 QSTCVIQLGNKSDQCVA-FKVKT-----------------TSPKKYCVRPNV--SIIKPKAISDFTVTMQAQ 73 (329)
Q Consensus 22 ~~s~~LtLtN~S~~~VA-FKVKT-----------------TaP~rY~VRPn~--GiI~Pgesv~V~ItLq~~ 73 (329)
.....|+|+|.++.++. ++|.= ..-..|.|+|.. +.|.||+++.+-+.....
T Consensus 14 Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~~ 85 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASGS 85 (101)
T ss_dssp EEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEES
T ss_pred CeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeCC
Confidence 34557888887766541 33221 123678888754 799999998876665543
No 51
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=30.46 E-value=2.1e+02 Score=22.88 Aligned_cols=55 Identities=11% Similarity=0.261 Sum_probs=32.3
Q ss_pred EEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEe-eccc
Q 020222 7 DIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVT-MQAQ 73 (329)
Q Consensus 7 ~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~It-Lq~~ 73 (329)
..+|.++.... +. ..+|+++|..+..-.|-+.. +.+ ...|.||++..+.++ ..++
T Consensus 31 ~f~P~~i~v~~--G~--~v~l~~~N~~~~~h~~~i~~-----~~~---~~~l~~g~~~~~~f~~~~~G 86 (104)
T PF13473_consen 31 GFSPSTITVKA--GQ--PVTLTFTNNDSRPHEFVIPD-----LGI---SKVLPPGETATVTFTPLKPG 86 (104)
T ss_dssp EEES-EEEEET--TC--EEEEEEEE-SSS-EEEEEGG-----GTE---EEEE-TT-EEEEEEEE-S-E
T ss_pred eEecCEEEEcC--CC--eEEEEEEECCCCcEEEEECC-----Cce---EEEECCCCEEEEEEcCCCCE
Confidence 45677776644 22 34699999988877777765 111 167999999999985 3444
No 52
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=26.27 E-value=1e+02 Score=28.19 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=45.4
Q ss_pred eEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCCCCCeEEEEEEEeCCC
Q 020222 23 STCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFG 96 (329)
Q Consensus 23 ~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~~kDKFLVQs~~vp~~ 96 (329)
.+-..-|.|-|+.++.|-.-+...+.|.+| +.|.|+|+..+-|.-.-... ...-.+..||.+.--.+
T Consensus 18 T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~e------LN~~~~v~vQ~iAyK~~ 84 (162)
T PF09640_consen 18 TRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKEE------LNDLERVAVQLIAYKKD 84 (162)
T ss_dssp --EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GGG------GGG-SSEEEEEEEE-SS
T ss_pred CceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHHH------hhccceeEEEEEEEcCC
Confidence 355778999999999999999888899998 68999999988876543221 11234566776665544
No 53
>smart00637 CBD_II CBD_II domain.
Probab=25.93 E-value=3.1e+02 Score=21.46 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=18.1
Q ss_pred CcEEEeCCc--eeeCCCCeEEEEEee
Q 020222 47 KKYCVRPNV--SIIKPKAISDFTVTM 70 (329)
Q Consensus 47 ~rY~VRPn~--GiI~Pgesv~V~ItL 70 (329)
..|.++|.. +.|.||+++.+-+..
T Consensus 50 ~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 50 GHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred CEEEEecCccccccCCCCEEEEEEEe
Confidence 368888643 799999988776655
No 54
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.73 E-value=70 Score=24.03 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 020222 174 VFETAKFADELTETKDLQWLENAKERDES 202 (329)
Q Consensus 174 ~~e~~~~~~el~~l~~~~~~en~~l~~e~ 202 (329)
..++++++.++..++. ||.+|+.|=
T Consensus 23 ~~ei~~l~~~i~~l~~----e~~~L~~ei 47 (80)
T PF04977_consen 23 NQEIAELQKEIEELKK----ENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 5677777777777777 777776653
No 55
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=25.38 E-value=72 Score=25.14 Aligned_cols=16 Identities=31% Similarity=0.140 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHhhhh
Q 020222 174 VFETAKFADELTETKD 189 (329)
Q Consensus 174 ~~e~~~~~~el~~l~~ 189 (329)
.+-++.|+.|+.+|+.
T Consensus 17 veti~~Lq~e~eeLke 32 (72)
T PF06005_consen 17 VETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667777777777777
No 56
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.38 E-value=71 Score=24.66 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 020222 174 VFETAKFADELTETKDLQWLENAKERDE 201 (329)
Q Consensus 174 ~~e~~~~~~el~~l~~~~~~en~~l~~e 201 (329)
..++++++.|+..+++ ||.+|+.|
T Consensus 30 ~~~~~~~~~~~~~l~~----en~~L~~e 53 (85)
T TIGR02209 30 NNELQKLQLEIDKLQK----EWRDLQLE 53 (85)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 4566777777777777 77777665
No 57
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.31 E-value=1.9e+02 Score=27.18 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=32.1
Q ss_pred EEEEEEcCCCCeEEEE--EeeCCCCcEEEeCCceeeCCCCeEEEEEe
Q 020222 25 CVIQLGNKSDQCVAFK--VKTTSPKKYCVRPNVSIIKPKAISDFTVT 69 (329)
Q Consensus 25 ~~LtLtN~S~~~VAFK--VKTTaP~rY~VRPn~GiI~Pgesv~V~It 69 (329)
..|++.|+|..++.|- .-+. .++-.. -+.+.|.|+++..+.+.
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeecC
Confidence 5899999999999998 3333 333322 67899999999886654
No 58
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=23.99 E-value=1.9e+02 Score=24.54 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=25.1
Q ss_pred eEEeccCCCeeEEEEEEEcCCCCeEEEEEee
Q 020222 13 LKFTFEVKKQSTCVIQLGNKSDQCVAFKVKT 43 (329)
Q Consensus 13 L~F~~p~~k~~s~~LtLtN~S~~~VAFKVKT 43 (329)
..+...++....-.++|+|.|++.+.|+|..
T Consensus 19 FdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~ 49 (121)
T PF06030_consen 19 FDLKVKPGQKQTLEVRITNNSDKEITVKVSA 49 (121)
T ss_pred EEEEeCCCCEEEEEEEEEeCCCCCEEEEEEE
Confidence 3444566778888999999999999999864
No 59
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.96 E-value=3.8e+02 Score=24.49 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=37.6
Q ss_pred CCeeEEEEEEEcCCCCeEEEEEeeCC----CCcEEEeC-----CceeeCCCCeEEEEEeeccc
Q 020222 20 KKQSTCVIQLGNKSDQCVAFKVKTTS----PKKYCVRP-----NVSIIKPKAISDFTVTMQAQ 73 (329)
Q Consensus 20 ~k~~s~~LtLtN~S~~~VAFKVKTTa----P~rY~VRP-----n~GiI~Pgesv~V~ItLq~~ 73 (329)
++.....++|+|..+. -||.|+=+. ++.|.+-- ....|.||+.+.-.+++.|.
T Consensus 37 g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK 98 (181)
T ss_pred CcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee
Confidence 5678899999999666 799999888 24444321 23567777777777777664
No 60
>PF13205 Big_5: Bacterial Ig-like domain
Probab=23.10 E-value=3.6e+02 Score=20.88 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=36.2
Q ss_pred eeEEeccCCC-eeEEEEEEE--cCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEee
Q 020222 12 ELKFTFEVKK-QSTCVIQLG--NKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTM 70 (329)
Q Consensus 12 EL~F~~p~~k-~~s~~LtLt--N~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItL 70 (329)
.|.|..+.+. .....+.+. +....++.+. ....+.+.+.|. +-|.||..+.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECC
Confidence 4677776542 333455554 3444555555 444588999998 558899999999843
No 61
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=22.68 E-value=2.9e+02 Score=19.65 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=40.8
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEe-CCce---eeCCCCeEEEEEee
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVR-PNVS---IIKPKAISDFTVTM 70 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VR-Pn~G---iI~Pgesv~V~ItL 70 (329)
|-|.|..|.+.........+++.-.--.....-|.+.+.......+. ++.. .+.+|+.+.|.+.-
T Consensus 1 l~iRPE~i~l~~~~~~~~~g~V~~~~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~~~~ 69 (75)
T PF08402_consen 1 LGIRPEDIRLSPEGENRLPGTVVSVEFLGSETRYTVRLEGGEELVVRVPNSQRDSPLEPGDEVRLSWDP 69 (75)
T ss_dssp EEE-GGGEEEESSTTTEEEEEEEEEEEESSEEEEEEEETTSSEEEEEEESSG-TTT--TTSEEEEEEEG
T ss_pred CEECcceeEEECCCCCeEEEEEEEEEECCCEEEEEEEECCCCEEEEEecCccccCCCCCCCEEEEEECc
Confidence 46789888775222336666666655667888888988876664443 4444 68888888877643
No 62
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=22.59 E-value=82 Score=27.24 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcceee
Q 020222 174 VFETAKFADELTETKDLQWLENAKERDESRAAKDVQM 210 (329)
Q Consensus 174 ~~e~~~~~~el~~l~~~~~~en~~l~~e~~~~r~~~~ 210 (329)
++|.+-|+.+|.+|-+ -|++|+.|+--||..+-
T Consensus 66 REEVe~Lk~qI~eL~e----r~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEE----RNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhCC
Confidence 8899999999999999 99999999988887653
No 63
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.85 E-value=73 Score=33.60 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcc
Q 020222 174 VFETAKFADELTETKDLQWLENAKERDESRAAKD 207 (329)
Q Consensus 174 ~~e~~~~~~el~~l~~~~~~en~~l~~e~~~~r~ 207 (329)
+.+.++++.|+..+.. +|+.|++|+=|||+
T Consensus 65 va~~k~~r~~~~~l~~----~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 65 VAEVKELRKRLAKLIS----ENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 7888999999999999 99999999988887
No 64
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.63 E-value=84 Score=30.49 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhh-hhhhhhhhcce
Q 020222 174 VFETAKFADELTETKDLQWLENAK-ERDESRAAKDV 208 (329)
Q Consensus 174 ~~e~~~~~~el~~l~~~~~~en~~-l~~e~~~~r~~ 208 (329)
.+|-++|++|+.+++. ++....+ ++.|+.|||+.
T Consensus 72 ~~EN~~Lr~e~~~l~~-~~~~~~~~l~~EN~rLr~L 106 (283)
T TIGR00219 72 EYENYKLRQELLKKNQ-QLEILTQNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 5666777777776633 2333333 77777777763
No 65
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=21.56 E-value=3.2e+02 Score=20.59 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=34.0
Q ss_pred CCeeEEEEEEEcCCCC-eEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeeccc
Q 020222 20 KKQSTCVIQLGNKSDQ-CVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (329)
Q Consensus 20 ~k~~s~~LtLtN~S~~-~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~ 73 (329)
+....-.++|+|.... .=.|+|+-...+...-....+-|.||++..+.+++.+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 4677889999999654 34566654333333333334788999999999988875
No 66
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=21.34 E-value=1.9e+02 Score=27.62 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=29.4
Q ss_pred EEEEEcCCCCeEEEE-EeeCCCCcEEEeCCceeeCCCCeEEEEE
Q 020222 26 VIQLGNKSDQCVAFK-VKTTSPKKYCVRPNVSIIKPKAISDFTV 68 (329)
Q Consensus 26 ~LtLtN~S~~~VAFK-VKTTaP~rY~VRPn~GiI~Pgesv~V~I 68 (329)
.|+++|+|..++.|. ++....+ -.+....|.|.|+++..+.+
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEc
Confidence 599999999999886 4322222 12333458999999998875
No 67
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=20.24 E-value=4e+02 Score=20.26 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=37.4
Q ss_pred CCeeEEeccCCCeeEEEEEEEcCCC--CeEEEEEeeC---CCCcEEEeCCceeeCCCCeEEEEEe
Q 020222 10 PLELKFTFEVKKQSTCVIQLGNKSD--QCVAFKVKTT---SPKKYCVRPNVSIIKPKAISDFTVT 69 (329)
Q Consensus 10 P~EL~F~~p~~k~~s~~LtLtN~S~--~~VAFKVKTT---aP~rY~VRPn~GiI~Pgesv~V~It 69 (329)
|-.|.+...........|.|.|-.. -.....|.+. ..+.|.+.++.+ |.++....|.|.
T Consensus 14 ~~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~-l~~~~~Y~i~~~ 77 (93)
T PF10342_consen 14 PITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD-LPSGGDYFIQIV 77 (93)
T ss_pred cEEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC-CCCCCcEEEEEE
Confidence 3457776654456788999999765 2222334322 236788888775 566667777776
Done!