Query 020222
Match_columns 329
No_of_seqs 156 out of 663
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:39:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 2.2E-31 7.5E-36 229.5 19.0 125 4-132 13-138 (147)
2 1wic_A Hypothetical protein ri 100.0 3.9E-32 1.4E-36 236.1 13.1 130 3-137 16-148 (152)
3 1z9l_A Vesicle-associated memb 100.0 3.9E-31 1.3E-35 222.3 17.3 118 4-125 9-127 (128)
4 1msp_A MSP, major sperm protei 100.0 2.9E-29 1E-33 211.6 16.3 119 3-125 6-125 (126)
5 1row_A SSP-19, MSP-domain prot 99.9 4.5E-25 1.5E-29 182.7 14.4 104 6-123 3-106 (109)
6 1m1s_A WR4; structural genomic 99.9 2.4E-24 8.2E-29 180.6 15.8 106 4-123 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.2 6.8E-06 2.3E-10 67.4 9.6 66 6-74 26-92 (122)
8 3qbt_B Inositol polyphosphate 98.0 4.7E-05 1.6E-09 64.7 10.5 70 3-72 24-100 (140)
9 2e6j_A Hydin protein; PAPD, st 97.9 4.4E-05 1.5E-09 60.7 8.0 70 4-73 8-81 (112)
10 3qis_A Inositol polyphosphate 97.4 0.00052 1.8E-08 66.4 10.2 73 2-74 26-105 (366)
11 2qsv_A Uncharacterized protein 95.9 0.026 8.8E-07 50.4 8.4 69 5-74 2-71 (220)
12 2qsv_A Uncharacterized protein 94.9 0.1 3.5E-06 46.5 9.0 69 4-74 118-187 (220)
13 3q48_A Chaperone CUPB2; IG fol 91.5 2.3 7.9E-05 39.3 12.3 110 6-129 30-149 (257)
14 2co7_B SAFB chaperone, putativ 89.4 2.1 7.3E-05 38.5 9.9 84 6-95 14-102 (221)
15 2xg5_A PAPD, chaperone protein 89.3 3.1 0.00011 37.3 10.9 110 6-129 2-120 (218)
16 1klf_A FIMC chaperone, chapero 87.3 3.9 0.00013 36.4 10.1 111 6-129 2-120 (205)
17 4djm_A DRAB; chaperone, PILI; 85.4 4.2 0.00014 37.2 9.5 84 6-95 24-112 (239)
18 1l4i_A SFAE protein; periplasm 85.2 6.2 0.00021 35.0 10.3 112 6-129 2-120 (206)
19 1yew_A Particulate methane mon 82.6 7.1 0.00024 38.4 10.1 69 3-73 247-337 (382)
20 4ay0_A Chaperone protein CAF1M 79.4 17 0.00056 32.7 10.9 109 6-128 14-129 (218)
21 3gfu_C Chaperone protein FAEE; 76.5 14 0.00046 33.6 9.4 107 6-128 2-115 (224)
22 2r39_A FIXG-related protein; s 75.1 12 0.00042 29.9 7.9 51 23-73 33-84 (118)
23 3rfr_A PMOB; membrane, oxidore 74.0 14 0.00048 36.7 9.3 67 4-73 282-369 (419)
24 2w6a_A ARF GTPase-activating p 42.1 17 0.00057 27.1 2.6 23 174-200 40-62 (63)
25 2oa5_A Hypothetical protein BQ 39.1 15 0.00052 30.3 2.2 21 177-201 10-30 (110)
26 2huh_A Putative DNA mismatch r 38.5 51 0.0017 28.3 5.6 66 24-96 29-94 (147)
27 3hn9_A Lamin-B1; structural ge 33.6 51 0.0017 27.0 4.7 41 26-67 26-72 (123)
28 1a93_B MAX protein, coiled coi 31.3 39 0.0013 22.4 2.8 28 174-205 6-33 (34)
29 1t6f_A Geminin; coiled-coil, c 29.8 37 0.0013 22.8 2.5 22 175-200 14-35 (37)
30 3idu_A Uncharacterized protein 28.6 1.4E+02 0.0046 24.5 6.5 68 20-96 32-100 (127)
31 1deb_A APC protein, adenomatou 27.2 36 0.0012 24.5 2.3 20 178-201 6-25 (54)
32 3zy7_A AP-1 complex subunit ga 26.9 1E+02 0.0035 24.9 5.4 69 22-94 30-104 (122)
33 2w6b_A RHO guanine nucleotide 24.7 39 0.0013 24.7 2.1 23 174-200 9-31 (56)
34 3jt0_A Lamin-B1; structural ge 24.6 87 0.003 26.5 4.7 41 26-67 39-85 (144)
35 3e38_A Two-domain protein cont 24.2 1.9E+02 0.0064 27.5 7.4 64 25-95 270-333 (343)
36 2xzz_A Protein-glutamine gamma 22.4 2.3E+02 0.008 22.2 6.6 55 20-75 19-76 (102)
37 4gio_A Putative lipoprotein; u 22.2 2.3E+02 0.0078 22.6 6.5 49 19-67 34-88 (107)
38 1yyc_A LEA protein, putative l 21.6 2.1E+02 0.007 24.8 6.6 51 22-72 63-119 (174)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.98 E-value=2.2e-31 Score=229.54 Aligned_cols=125 Identities=34% Similarity=0.574 Sum_probs=113.5
Q ss_pred cceEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCCC
Q 020222 4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC 82 (329)
Q Consensus 4 ~LL~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~~ 82 (329)
.+|.|+|. +|.|.+|+++.++|.|+|+|+++++||||||||+|++|+|||+.|+|.||+++.|.|+|+++...| ++++
T Consensus 13 ~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~~p-~~~~ 91 (147)
T 2cri_A 13 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDP-NEKS 91 (147)
T ss_dssp CCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCCCT-TCCS
T ss_pred CeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcCCc-cccC
Confidence 58999996 899999999999999999999999999999999999999999999999999999999999986544 5689
Q ss_pred CCeEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCCCCCC
Q 020222 83 KDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPV 132 (329)
Q Consensus 83 kDKFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~~p~~sp~ 132 (329)
+|||+||++.++++.+ ++ .++|++..+..++++||+|+|+.|++++.
T Consensus 92 kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~~ 138 (147)
T 2cri_A 92 KHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNENDK 138 (147)
T ss_dssp CCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCSSC
T ss_pred CCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCCcc
Confidence 9999999999998653 44 48999888888999999999998877643
No 2
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=99.97 E-value=3.9e-32 Score=236.11 Aligned_cols=130 Identities=29% Similarity=0.418 Sum_probs=117.5
Q ss_pred CcceEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCC
Q 020222 3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQ 81 (329)
Q Consensus 3 s~LL~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~ 81 (329)
..+|.|+|. +|.|.++++++.+|.|+|+|+++++||||||||+|++|+|||+.|+|.||+++.|.|+||++.. ..
T Consensus 16 ~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~~ 91 (152)
T 1wic_A 16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----VS 91 (152)
T ss_dssp CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----CC
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----CC
Confidence 468999997 8999999999999999999999999999999999999999999999999999999999999853 27
Q ss_pred CCCeEEEEEEEeC--CCCCccchhhhhhcccCCCceeEEEeEEEEeCCCCCCCccCCC
Q 020222 82 CKDKFLIQGIVVP--FGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRN 137 (329)
Q Consensus 82 ~kDKFLVQs~~vp--~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~~p~~sp~~~p~~ 137 (329)
++|||+||++.++ .+.+..++. ++|++..+..++++||+|+|+.++.+++++..+
T Consensus 92 ~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g 148 (152)
T 1wic_A 92 AQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSG 148 (152)
T ss_dssp SSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCC
T ss_pred CCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccC
Confidence 8999999999999 566667776 799998888899999999999999887765443
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=99.97 E-value=3.9e-31 Score=222.28 Aligned_cols=118 Identities=35% Similarity=0.590 Sum_probs=108.3
Q ss_pred cceEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCCC
Q 020222 4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC 82 (329)
Q Consensus 4 ~LL~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~~ 82 (329)
.+|.|+|. +|.|.+|+++.++|.|+|+|+|+++||||||||+|++|+|||+.|+|.||+++.|.|+++++...| ++++
T Consensus 9 ~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~~p-~~~~ 87 (128)
T 1z9l_A 9 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYDP-NEKS 87 (128)
T ss_dssp CCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCCCT-TCCC
T ss_pred CeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcCCc-cccc
Confidence 58999996 999999999999999999999999999999999999999999999999999999999999986544 5689
Q ss_pred CCeEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEe
Q 020222 83 KDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILM 125 (329)
Q Consensus 83 kDKFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~ 125 (329)
+|||+||++.++++.+ ++ .++|++..+..++++||+|+|.
T Consensus 88 ~dkF~V~s~~~~~~~~--~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 88 KHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp CCEEEEEEEECCTTCS--CH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcc--hH-HHHhhcCCCCceEEEEEEEEEe
Confidence 9999999999998654 45 4899998888899999999995
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.96 E-value=2.9e-29 Score=211.61 Aligned_cols=119 Identities=21% Similarity=0.333 Sum_probs=105.8
Q ss_pred CcceEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCC
Q 020222 3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQ 81 (329)
Q Consensus 3 s~LL~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~ 81 (329)
...|.++|. +|.|++|+++..+|.|+|+|+|+++||||||||+|++|+|||++|+|.||+++.|.|+||++...|++ .
T Consensus 6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~-~ 84 (126)
T 1msp_A 6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATED-L 84 (126)
T ss_dssp CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSC-C
T ss_pred CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCc-c
Confidence 467999996 89999999999999999999999999999999999999999999999999999999999999876655 4
Q ss_pred CCCeEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEe
Q 020222 82 CKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILM 125 (329)
Q Consensus 82 ~kDKFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~ 125 (329)
.+|||+|||+.++++.+ +++...||... ..+..++|+|.|.
T Consensus 85 ~kDKf~Vq~~~~p~~~~-~~~~~~wf~~d--~~~~~k~L~V~Yn 125 (126)
T 1msp_A 85 NNDRITIEWTNTPDGAA-KQFRREWFQGD--GMVRRKNLPIEYN 125 (126)
T ss_dssp SSCEEEEEEEECCTTCC-SSCCTHHHHSS--SCCEEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCcc-hhhhHHhhcCC--CceEEEEEEEEec
Confidence 49999999999998864 56776566443 4689999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.93 E-value=4.5e-25 Score=182.75 Aligned_cols=104 Identities=17% Similarity=0.276 Sum_probs=89.4
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCCCCCe
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDK 85 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~~kDK 85 (329)
|.|+|.+|.|.++. .+|+|+|+|+|+++||||||||+|++|||||++|+|+||++++|.|++|++ + .++||
T Consensus 3 L~i~P~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 89999999999873 479999999999999999999999999999999999999999999999995 2 46999
Q ss_pred EEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEE
Q 020222 86 FLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 123 (329)
Q Consensus 86 FLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVv 123 (329)
|+||++.++++.. +. +++|++..+ ..+.+|++.
T Consensus 74 flvq~~~~~~~~~--d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADAT--DA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTCS--CH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCCC--CH-HHHhhcCCC--CceEEEEEE
Confidence 9999999987643 33 579998654 445566654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.92 E-value=2.4e-24 Score=180.64 Aligned_cols=106 Identities=24% Similarity=0.367 Sum_probs=91.7
Q ss_pred cceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCCCC
Q 020222 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCK 83 (329)
Q Consensus 4 ~LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~~k 83 (329)
.++.++|.+|.|.+. +.+|.|+|+|+|+.+||||||||+|+.|||||++|+|+||++++|.|++|++ | .++
T Consensus 9 ~~~~~~p~~l~F~~~---gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPAT---GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTT---CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecC---CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 578999999999874 4599999999999999999999999999999999999999999999999997 2 458
Q ss_pred CeEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEE
Q 020222 84 DKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 123 (329)
Q Consensus 84 DKFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVv 123 (329)
|||+||++.++++.. +. +++|++..+ ..+.+|++.
T Consensus 80 DKflVq~~~~~~d~~--d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEET--DP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTCC--CT-THHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCCC--CH-HHHHhcCCC--CceEEEEEE
Confidence 999999999997543 33 479998754 567777764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=6.8e-06 Score=67.37 Aligned_cols=66 Identities=21% Similarity=0.427 Sum_probs=56.8
Q ss_pred eEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccc
Q 020222 6 LDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (329)
Q Consensus 6 L~I~P~EL~F~~-p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~ 74 (329)
|.+ |..|.|.. +.+......+.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|++.|..
T Consensus 26 l~~-p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~ 92 (122)
T 2ys4_A 26 LDF-PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQS 92 (122)
T ss_dssp CCC-CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSS
T ss_pred ECC-CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCC
Confidence 444 66788865 456778899999999999999999974 4799999999999999999999999974
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.97 E-value=4.7e-05 Score=64.67 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=60.7
Q ss_pred CcceEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEEeeC------CCCcEEEeCCceeeCCCCeEEEEEeecc
Q 020222 3 EELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTT------SPKKYCVRPNVSIIKPKAISDFTVTMQA 72 (329)
Q Consensus 3 s~LL~I~P~EL~F~~-p~~k~~s~~LtLtN~S~~~VAFKVKTT------aP~rY~VRPn~GiI~Pgesv~V~ItLq~ 72 (329)
.+-+.+++.+|.|-. .+....+++|+|+|++.-+..|++... .+..+.|.|..|.|.||+++.|.|++..
T Consensus 24 ~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 24 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp SCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 367889999999975 567788999999999999999999853 3467999999999999999999999874
No 9
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.86 E-value=4.4e-05 Score=60.67 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=59.4
Q ss_pred cceEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEEeeCCC---CcEEEeCCceeeCCCCeEEEEEeeccc
Q 020222 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTSP---KKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (329)
Q Consensus 4 ~LL~I~P~EL~F~~-p~~k~~s~~LtLtN~S~~~VAFKVKTTaP---~rY~VRPn~GiI~Pgesv~V~ItLq~~ 73 (329)
+.+.+++..|.|-. ..+...++.++|+|+++.++.|++..... ..|.+.|+.|.|.||++..|.|++.+.
T Consensus 8 P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 8 PKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 56788888888866 34667788999999999999999964222 469999999999999999999999995
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.45 E-value=0.00052 Score=66.41 Aligned_cols=73 Identities=12% Similarity=0.163 Sum_probs=60.9
Q ss_pred CCcceEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEEeeCC------CCcEEEeCCceeeCCCCeEEEEEeecccc
Q 020222 2 AEELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTS------PKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (329)
Q Consensus 2 ~s~LL~I~P~EL~F~~-p~~k~~s~~LtLtN~S~~~VAFKVKTTa------P~rY~VRPn~GiI~Pgesv~V~ItLq~~~ 74 (329)
+.+-+.|+|.+|.|-. .+....+.+|+|+|++.-+..|++.... +..+.|.|..|.|.||+++.|.|++....
T Consensus 26 ~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~~ 105 (366)
T 3qis_A 26 FLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSK 105 (366)
T ss_dssp --CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBCT
T ss_pred cCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEECH
Confidence 3467899999999965 5778889999999999999999987542 34478999999999999999999986543
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.88 E-value=0.026 Score=50.44 Aligned_cols=69 Identities=10% Similarity=0.218 Sum_probs=58.7
Q ss_pred ceEEeCCeeEEecc-CCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccc
Q 020222 5 LLDIQPLELKFTFE-VKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (329)
Q Consensus 5 LL~I~P~EL~F~~p-~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~ 74 (329)
-|.++|..+.|.-- .+......++++|+++.++-++.-.. |..+..++..+.|.||++..|.|++.+..
T Consensus 2 ~i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp CEEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred ceEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 48899999999763 34456779999999999999997644 88889999999999999999999998754
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.92 E-value=0.1 Score=46.48 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=56.9
Q ss_pred cceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEE-EEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccc
Q 020222 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAF-KVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (329)
Q Consensus 4 ~LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAF-KVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~ 74 (329)
+-+.++ ..+.|-.-.+....+.++|+|.++.++.+ +|+|++ +...+.++.+.|.||++..|.|++.+..
T Consensus 118 ~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~~ 187 (220)
T 2qsv_A 118 GVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQV 187 (220)
T ss_dssp CCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHHH
T ss_pred CEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecCC
Confidence 346677 77777532256778899999999999988 787765 7999999999999999999999998853
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=91.49 E-value=2.3 Score=39.28 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=71.9
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCC----------CcEEEeCCceeeCCCCeEEEEEeeccccc
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP----------KKYCVRPNVSIIKPKAISDFTVTMQAQRV 75 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP----------~rY~VRPn~GiI~Pgesv~V~ItLq~~~~ 75 (329)
|.|+|+.+.|... ....+|+|+|.++.++.-.+...+. .-|.|.|+.-.|+||+...|.|..... .
T Consensus 30 v~i~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~-~ 105 (257)
T 3q48_A 30 LIAQGTRVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-P 105 (257)
T ss_dssp -CCSCSEEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-C
T ss_pred EEEcceEEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-C
Confidence 5677788888773 3368999999998887766554321 249999999999999999999987654 2
Q ss_pred CCCCCCCCCeEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCCC
Q 020222 76 APPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQ 129 (329)
Q Consensus 76 ~P~d~~~kDKFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~~p~~ 129 (329)
.|.|.. --|-+....+|+.... + ...=......+|++-|-+..-
T Consensus 106 LP~DrE--Slf~lnv~eIPp~~~~-~-------~n~Lqiair~rIKLFyRP~~L 149 (257)
T 3q48_A 106 LPTDRE--SLFWLNILEVPPRDED-E-------NNALQFSFRSRFKLFFRPSQL 149 (257)
T ss_dssp CCSSSC--EEEEEEEEEECCC-----------------CCEEEEEEEEEECTTC
T ss_pred CCCCce--eEEEEEeeecCCCCCC-C-------CceEEEEEEEEEEEEEecccC
Confidence 454422 3566666666653211 0 000123467888888876543
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=89.43 E-value=2.1 Score=38.52 Aligned_cols=84 Identities=11% Similarity=0.173 Sum_probs=61.9
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC-----CCcEEEeCCceeeCCCCeEEEEEeecccccCCCCC
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa-----P~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~ 80 (329)
|.++++.+.|.... ...+|+|+|.++.++.-.+..-. ..-|.|.|+.-.|+||+...|.|..... ..|.|.
T Consensus 14 v~i~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~Dr 89 (221)
T 2co7_B 14 VKLGATRVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 89 (221)
T ss_dssp CEESCSEEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCSSS
T ss_pred EEEcceEEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCCCc
Confidence 67888889998743 46799999999887766654432 1359999999999999999999988762 355542
Q ss_pred CCCCeEEEEEEEeCC
Q 020222 81 QCKDKFLIQGIVVPF 95 (329)
Q Consensus 81 ~~kDKFLVQs~~vp~ 95 (329)
..-|-+....+|+
T Consensus 90 --Eslf~lnv~eIPp 102 (221)
T 2co7_B 90 --ETLQWVCIKAVPP 102 (221)
T ss_dssp --CEEEEEEEEEECC
T ss_pred --eEEEEEEeecCCC
Confidence 2356666666664
No 15
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=89.34 E-value=3.1 Score=37.34 Aligned_cols=110 Identities=13% Similarity=0.138 Sum_probs=73.4
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEEeeCC-------CCcEEEeCCceeeCCCCeEEEEEeeccc-ccC
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQ-RVA 76 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~-~VAFKVKTTa-------P~rY~VRPn~GiI~Pgesv~V~ItLq~~-~~~ 76 (329)
|.++++.+.|.... ...+|+|+|.++. ++.-.+.... ..-|.|.|+.-.|+||+...|.|...+. ...
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 56788889998743 4779999999987 7766655433 2349999999999999999999988762 235
Q ss_pred CCCCCCCCeEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCCC
Q 020222 77 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQ 129 (329)
Q Consensus 77 P~d~~~kDKFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~~p~~ 129 (329)
|.|. ..-|-+....+|+... + .+. =......+|++-|-+..-
T Consensus 79 P~Dr--ESlf~lnv~eIPp~~~--~------~n~-lqia~r~rIKlFyRP~~l 120 (218)
T 2xg5_A 79 PQDR--ESLFYFNLREIPPRSE--K------ANV-LQIALQTKIKLFYRPAAI 120 (218)
T ss_dssp CSSS--CEEEEEEEEEECCCCC--C------TTE-EEEEEEEEEEEEEECGGG
T ss_pred CCCc--eEEEEEEeecCCCCCC--C------Cce-EEEEehheeeEEEcCccc
Confidence 6542 3456666666664211 0 000 012356788887766543
No 16
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=87.28 E-value=3.9 Score=36.36 Aligned_cols=111 Identities=9% Similarity=0.154 Sum_probs=72.5
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEEeeCC-----CCcEEEeCCceeeCCCCeEEEEEee-cccccCCC
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVTM-QAQRVAPP 78 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~-~VAFKVKTTa-----P~rY~VRPn~GiI~Pgesv~V~ItL-q~~~~~P~ 78 (329)
|.++++.+.|... ....+|+|+|.++. ++.-.+.... ..-|.|.|+.-.|+||+...|.|.. .+ ...|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAG---QKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATN-NQLPQ 77 (205)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSC-SCSCS
T ss_pred eEecceEEEEeCC---CcEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5678888999874 34779999999887 7666654422 2359999999999999999999988 65 23555
Q ss_pred CCCCCCeEEEEEEEeCCCCCccchhhhhhcccCC-CceeEEEeEEEEeCCCC
Q 020222 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSG-KYVEEKKLRVILMSPPQ 129 (329)
Q Consensus 79 d~~~kDKFLVQs~~vp~~~t~~di~~eiWkk~~k-~~I~e~KLrVvf~~p~~ 129 (329)
|. ..-|-+....+|+.....+ .... ......+|++-|-+..-
T Consensus 78 Dr--Eslf~lnv~eIPp~~~~~~-------~~n~lqia~r~riKlFyRP~~l 120 (205)
T 1klf_A 78 DR--ESLFWMNVKAIPSMDKSKL-------TENTLQLAIISRIKLYYRPAKL 120 (205)
T ss_dssp SS--CEEEEEEEEEECCCCTTST-------TSCEEEEEEEEEEEEEEECTTC
T ss_pred Cc--eEEEEEEeEecCCCCcccc-------CCceEEEEeeeeeeEEEccccc
Confidence 42 2356666666664211000 0000 12356788887766544
No 17
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=85.37 E-value=4.2 Score=37.16 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=60.0
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC-----CCcEEEeCCceeeCCCCeEEEEEeecccccCCCCC
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa-----P~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~ 80 (329)
|.|.++.+.|.... ...+|+|+|.++.++.-.+.... ..-|.|.|+.-.|+||+...|.|..... ..|.|.
T Consensus 24 v~l~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~DR 99 (239)
T 4djm_A 24 LHLGATRVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPDR 99 (239)
T ss_dssp CEESCSEEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSSS
T ss_pred EEEcceEEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCCc
Confidence 67888889997743 36799999998887655544321 2349999999999999999999987654 245442
Q ss_pred CCCCeEEEEEEEeCC
Q 020222 81 QCKDKFLIQGIVVPF 95 (329)
Q Consensus 81 ~~kDKFLVQs~~vp~ 95 (329)
..-|-+....+|+
T Consensus 100 --ESlf~lnv~eIPp 112 (239)
T 4djm_A 100 --ESLQWICVKGIPP 112 (239)
T ss_dssp --CEEEEEEEEEECC
T ss_pred --eEEEEEEEEecCC
Confidence 2345555556664
No 18
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=85.24 E-value=6.2 Score=35.03 Aligned_cols=112 Identities=8% Similarity=0.172 Sum_probs=71.2
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCC-CeEEEEEeeCC-----CCcEEEeCCceeeCCCCeEEEEEe-ecccccCCC
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVT-MQAQRVAPP 78 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~-~~VAFKVKTTa-----P~rY~VRPn~GiI~Pgesv~V~It-Lq~~~~~P~ 78 (329)
|.++++.+.|... ....+|+|+|.++ .++.-.+.... ..-|.|.|+.-.|+||+...|.|. ... ...|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEG---QKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCC---CcEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5677888999874 3477999999986 77666654422 235999999999999999999998 653 33565
Q ss_pred CCCCCCeEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCCC
Q 020222 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQ 129 (329)
Q Consensus 79 d~~~kDKFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~~p~~ 129 (329)
|.. .-|-+....+|+.....+ . ...=......+|++-|-+..-
T Consensus 78 DrE--slf~lnv~eIPp~~~~~~-~-----~n~lqia~r~riKlFyRP~~l 120 (206)
T 1l4i_A 78 DRE--SLFWVNVKAIPAMDKAKT-G-----ENYLQFAIVSRIKLLYRPQGL 120 (206)
T ss_dssp SSC--EEEEEEEEEEECCC--------------CCCEEEEEEEEEEECTTC
T ss_pred Cce--EEEEEEeecCCCCccccc-C-----CceEEEEhhheeeEEEecccc
Confidence 432 345555555554211000 0 000123467888888876544
No 19
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=82.55 E-value=7.1 Score=38.37 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=51.1
Q ss_pred CcceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEE----------------------EeCCceeeCC
Q 020222 3 EELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYC----------------------VRPNVSIIKP 60 (329)
Q Consensus 3 s~LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~----------------------VRPn~GiI~P 60 (329)
...+.+....-.|.-| .+..+-+++++|.++.+|-..==+|+.-+|. |.|+ .-|.|
T Consensus 247 ~~~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~pI~P 324 (382)
T 1yew_A 247 APTVSVKVEDATYRVP-GRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SPLAP 324 (382)
T ss_dssp CCSEEEEEEEEEEESS-CSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SCBCT
T ss_pred CCceEEEeeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CCcCC
Confidence 4455555555667654 5788999999999999999886677766663 3333 24899
Q ss_pred CCeEEEEEeeccc
Q 020222 61 KAISDFTVTMQAQ 73 (329)
Q Consensus 61 gesv~V~ItLq~~ 73 (329)
|++.+|.|+.|..
T Consensus 325 GETr~~~v~a~da 337 (382)
T 1yew_A 325 GETRTVDVTASDA 337 (382)
T ss_dssp TCEEEEEEEEECH
T ss_pred CceeEEEEEeehH
Confidence 9999999998764
No 20
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=79.41 E-value=17 Score=32.69 Aligned_cols=109 Identities=11% Similarity=0.207 Sum_probs=67.3
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC-------CCcEEEeCCceeeCCCCeEEEEEeecccccCCC
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa-------P~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~ 78 (329)
|.|+-+-+.|+.. ....+|+|+|.++.+..-...... ..-|.|.|+.-.|+||+...|.|..... ..|.
T Consensus 14 v~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP~ 89 (218)
T 4ay0_A 14 VTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFPR 89 (218)
T ss_dssp EEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred EEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCCc
Confidence 5566677888763 346799999999888666654421 1249999999999999999999987764 3454
Q ss_pred CCCCCCeEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCC
Q 020222 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (329)
Q Consensus 79 d~~~kDKFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~~p~ 128 (329)
|. .--|-+....+|+..... .... ......+|++-|-+..
T Consensus 90 DR--ESlf~lnv~eIPp~~~~~------~n~l--qia~r~rIKlFyRP~~ 129 (218)
T 4ay0_A 90 DK--ESLKWLCVKGIPPKDEDI------WVDV--QFAINNCIKLLVRPNE 129 (218)
T ss_dssp SS--CEEEEEEEEEECC----------------------CEEEEEEECTT
T ss_pred Cc--EEEEEEEEEecCCCCccc------ccee--EEEEEEEEEEEEcCcc
Confidence 42 234666666676531110 0000 1234567888776643
No 21
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=76.46 E-value=14 Score=33.58 Aligned_cols=107 Identities=13% Similarity=0.195 Sum_probs=67.5
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEEeeC--C----CCcEEEeCCceeeCCCCeEEEEEeecccccCCC
Q 020222 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTT--S----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (329)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~-~VAFKVKTT--a----P~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~ 78 (329)
+.++.+-+.|... ....+|+|+|.++. ++.-.+... . ..-|.|.|+.-.|+||+...|.|..... ..|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 4556677888774 33679999999875 443333221 1 1249999999999999999999987653 2454
Q ss_pred CCCCCCeEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCC
Q 020222 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (329)
Q Consensus 79 d~~~kDKFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~~p~ 128 (329)
|. .--|-+....+|+... . +. =......+|++-|.+..
T Consensus 78 DR--ESlf~lnv~eIPp~~~-~--------n~-Lqiair~rIKLFyRP~~ 115 (224)
T 3gfu_C 78 DK--ESVYWLNLQDIPPALE-G--------SG-IAVALRTKLKLFYRPKA 115 (224)
T ss_dssp SS--CEEEEEEEEEECCCCS-S--------SB-CCEEEEEEEEEEEECGG
T ss_pred Cc--eEEEEEEeecCCCCCC-C--------Ce-EEEEEEEEeeEEEcccc
Confidence 42 2445555566664311 0 00 12346678888777643
No 22
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=75.13 E-value=12 Score=29.86 Aligned_cols=51 Identities=12% Similarity=0.256 Sum_probs=39.0
Q ss_pred eEEEEEEEcCCCCeEEEEEeeCCCCcEEE-eCCceeeCCCCeEEEEEeeccc
Q 020222 23 STCVIQLGNKSDQCVAFKVKTTSPKKYCV-RPNVSIIKPKAISDFTVTMQAQ 73 (329)
Q Consensus 23 ~s~~LtLtN~S~~~VAFKVKTTaP~rY~V-RPn~GiI~Pgesv~V~ItLq~~ 73 (329)
-..+|+|.|.+.++..|.+.......+.+ .|..=.+.||+...+.|.+...
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEEC
Confidence 37799999999999999998877544654 3554578899988877776543
No 23
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=73.96 E-value=14 Score=36.69 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=49.7
Q ss_pred cceEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEE---------------------eCCceeeCCCC
Q 020222 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCV---------------------RPNVSIIKPKA 62 (329)
Q Consensus 4 ~LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~V---------------------RPn~GiI~Pge 62 (329)
..+.+....-.|.-| ++...-+++++|.++.+|-+.==+|+.-+|.= .|+ -|.||+
T Consensus 282 ~~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGE 358 (419)
T 3rfr_A 282 EQVTTELNGGVYKVP-GRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGE 358 (419)
T ss_dssp CCCEEEEEEEEEESS-SSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTC
T ss_pred CceEEEEeceEEecC-CcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCc
Confidence 345555555667665 56889999999999999988866666665541 233 599999
Q ss_pred eEEEEEeeccc
Q 020222 63 ISDFTVTMQAQ 73 (329)
Q Consensus 63 sv~V~ItLq~~ 73 (329)
+.+|.|+.+..
T Consensus 359 Trt~~V~a~da 369 (419)
T 3rfr_A 359 SKEIVVKIQDA 369 (419)
T ss_dssp EEEEEEEEECH
T ss_pred ceEEEEEeehH
Confidence 99999998764
No 24
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=42.12 E-value=17 Score=27.09 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhh
Q 020222 174 VFETAKFADELTETKDLQWLENAKERD 200 (329)
Q Consensus 174 ~~e~~~~~~el~~l~~~~~~en~~l~~ 200 (329)
.+|+..|+++|.+|+. ||.+||.
T Consensus 40 s~Elr~mQ~~lq~LQs----en~~Lr~ 62 (63)
T 2w6a_A 40 SDELRKLQREIHKLQA----ENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHC
T ss_pred hHHHHHHHHHHHHHHh----hhhhhcc
Confidence 7899999999999999 9999884
No 25
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=39.07 E-value=15 Score=30.27 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhh
Q 020222 177 TAKFADELTETKDLQWLENAKERDE 201 (329)
Q Consensus 177 ~~~~~~el~~l~~~~~~en~~l~~e 201 (329)
-++|++||+.|+= ||++||..
T Consensus 10 ~EeLaaeL~kLqm----ENK~LKkk 30 (110)
T 2oa5_A 10 YEEMVKEVERLKL----ENKTLKQK 30 (110)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHT
T ss_pred HHHHHHHHHHHHH----HHHHHHHH
Confidence 3678999999998 99999963
No 26
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=38.46 E-value=51 Score=28.33 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=49.9
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCCCCCeEEEEEEEeCCC
Q 020222 24 TCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFG 96 (329)
Q Consensus 24 s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~~kDKFLVQs~~vp~~ 96 (329)
.-..-|.|.|+.++.|-.-+...+.|.++ ..|.|+|+.+..|.=.-... ...--+|.||.+..-.+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~e------ln~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKDV------LNEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGGG------GGGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChhH------hcCCceEEEEEEEEcCC
Confidence 45788999999999999988888888777 68999999998876432221 12245788888887653
No 27
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=33.61 E-value=51 Score=27.03 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=29.1
Q ss_pred EEEEEcCCCCeEE---EEEeeCCCC---cEEEeCCceeeCCCCeEEEE
Q 020222 26 VIQLGNKSDQCVA---FKVKTTSPK---KYCVRPNVSIIKPKAISDFT 67 (329)
Q Consensus 26 ~LtLtN~S~~~VA---FKVKTTaP~---rY~VRPn~GiI~Pgesv~V~ 67 (329)
.++|.|.+++.+. |+++-...+ .|.. |+.=+|.||++++|-
T Consensus 26 fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtVw 72 (123)
T 3hn9_A 26 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTIW 72 (123)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEEE
Confidence 7899999887665 777765443 3554 555589999997653
No 28
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=31.28 E-value=39 Score=22.39 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 020222 174 VFETAKFADELTETKDLQWLENAKERDESRAA 205 (329)
Q Consensus 174 ~~e~~~~~~el~~l~~~~~~en~~l~~e~~~~ 205 (329)
+....+.+.+|..++- +|+.|.++-..|
T Consensus 6 RrKn~a~qqDIddlkr----QN~~Le~Qir~l 33 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKR----QNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHC
T ss_pred hhhhHhhHhhHHHHHH----HHHHHHHHHHhc
Confidence 3456778899999999 999998886543
No 29
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=29.79 E-value=37 Score=22.78 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhhh
Q 020222 175 FETAKFADELTETKDLQWLENAKERD 200 (329)
Q Consensus 175 ~e~~~~~~el~~l~~~~~~en~~l~~ 200 (329)
-+++.-..||..||. ||.+|++
T Consensus 14 k~ie~KdeeIa~Lk~----eN~eL~E 35 (37)
T 1t6f_A 14 KEIEQKDNEIARLKK----ENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHT
T ss_pred HHHHHHHHHHHHHHH----hhHHHHh
Confidence 456777788888888 8888765
No 30
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=28.61 E-value=1.4e+02 Score=24.52 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=48.1
Q ss_pred CCeeEEEEEEEcCCCC-eEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCCCCCeEEEEEEEeCCC
Q 020222 20 KKQSTCVIQLGNKSDQ-CVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFG 96 (329)
Q Consensus 20 ~k~~s~~LtLtN~S~~-~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~~kDKFLVQs~~vp~~ 96 (329)
++...-.++++|.... -=+|+|+-...+.+.-.-..+ |.||++.+|.++..+.. ..-+.|....-+.+
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~~--------~G~~~v~AvVD~~n 100 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPTQ--------EGMYRINATVDEEN 100 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCSS--------CEEEEEEEEESTTC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcCC--------CcEEEEEEEEcCCC
Confidence 5677889999999864 467888876666655444444 99999999999876531 23466666666654
No 31
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.21 E-value=36 Score=24.51 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhh
Q 020222 178 AKFADELTETKDLQWLENAKERDE 201 (329)
Q Consensus 178 ~~~~~el~~l~~~~~~en~~l~~e 201 (329)
.++-+|.+-||- ||.+||.|
T Consensus 6 dQL~~QVe~Lk~----ENshLrrE 25 (54)
T 1deb_A 6 DQLLKQVEALKM----ENSNLRQE 25 (54)
T ss_dssp HHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHH----HhhHHHHH
Confidence 467788888888 99998876
No 32
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=26.87 E-value=1e+02 Score=24.92 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=41.6
Q ss_pred eeEEEEEEEcCCCCe-EEEEEeeCCCCcEEEe--CCce-eeCC--CCeEEEEEeecccccCCCCCCCCCeEEEEEEEeC
Q 020222 22 QSTCVIQLGNKSDQC-VAFKVKTTSPKKYCVR--PNVS-IIKP--KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVP 94 (329)
Q Consensus 22 ~~s~~LtLtN~S~~~-VAFKVKTTaP~rY~VR--Pn~G-iI~P--gesv~V~ItLq~~~~~P~d~~~kDKFLVQs~~vp 94 (329)
...-.++.+|.+..+ =-|.+..-.|+-|.++ |..| .|.| +..++=.+.+.... ....+=|+.|.+..-.
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~----~~~lklR~klsY~~~g 104 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ----KQQLRMRIKLTFNWNG 104 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTT----CCCCCEEEEEEEEETT
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCC----CCCEEEEEEEEEEECC
Confidence 356678888988654 4588888888877766 7776 6888 55444333332211 1234556666665433
No 33
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.68 E-value=39 Score=24.66 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhh
Q 020222 174 VFETAKFADELTETKDLQWLENAKERD 200 (329)
Q Consensus 174 ~~e~~~~~~el~~l~~~~~~en~~l~~ 200 (329)
++-.=++++|+.+|++ ||++++.
T Consensus 9 VDtVYaLkDqV~eL~q----e~k~m~k 31 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQ----DNKKMKK 31 (56)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHH
Confidence 5556788999999999 8888874
No 34
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=24.65 E-value=87 Score=26.51 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=27.3
Q ss_pred EEEEEcCCCCeEE---EEEeeCCCC---cEEEeCCceeeCCCCeEEEE
Q 020222 26 VIQLGNKSDQCVA---FKVKTTSPK---KYCVRPNVSIIKPKAISDFT 67 (329)
Q Consensus 26 ~LtLtN~S~~~VA---FKVKTTaP~---rY~VRPn~GiI~Pgesv~V~ 67 (329)
.++|.|.+++.+. |+|+-+..+ .|. -|+.=+|.||++++|-
T Consensus 39 fV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~-FP~~~~L~pg~~VtVw 85 (144)
T 3jt0_A 39 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYK-YTSRYVLKAGQTVTIW 85 (144)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEE-CCTTCEECTTCEEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEE-cCCCcEECCCCEEEEE
Confidence 7899999887664 566544332 243 4555589999997653
No 35
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=24.23 E-value=1.9e+02 Score=27.45 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=48.3
Q ss_pred EEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCCCCCeEEEEEEEeCC
Q 020222 25 CVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPF 95 (329)
Q Consensus 25 ~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~~kDKFLVQs~~vp~ 95 (329)
-++.|+|.|+- -|.++-+++..|.+.++.=.|+|+++.++.|.+..... ...=+|-|.-..+.+
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 333 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIK-----GGDVNFEVTNFIVAP 333 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTCC-----CCEEEEEEEEEEEET
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecccccc-----ceEEEEEeeeeeecC
Confidence 58899998876 56677789999999999999999999999997654321 233456665555543
No 36
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=22.38 E-value=2.3e+02 Score=22.17 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=39.9
Q ss_pred CCeeEEEEEEEcCCC---CeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeeccccc
Q 020222 20 KKQSTCVIQLGNKSD---QCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRV 75 (329)
Q Consensus 20 ~k~~s~~LtLtN~S~---~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~ 75 (329)
++...+.++++|+-+ ....|.|--..-.+-... ..|-|.||+++.+.+.+.|...
T Consensus 19 ~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~-~~~~v~pg~~~~~~~~~~P~~~ 76 (102)
T 2xzz_A 19 GQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL-NVGDIGGNETVTLRQSFVPVRP 76 (102)
T ss_dssp SSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE-EECCBCTTCEEEEEEEECCCSC
T ss_pred CCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE-EcCcCCCCCEEEEEEEEecCcc
Confidence 577899999999965 456777776553222222 2477999999999999998753
No 37
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=22.23 E-value=2.3e+02 Score=22.56 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=34.0
Q ss_pred CCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCC------ceeeCCCCeEEEE
Q 020222 19 VKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPN------VSIIKPKAISDFT 67 (329)
Q Consensus 19 ~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn------~GiI~Pgesv~V~ 67 (329)
.++.....++++|.++..+.||+.==..+.+.|.+. .=.|.++++..|.
T Consensus 34 ~nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~ 88 (107)
T 4gio_A 34 SNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILR 88 (107)
T ss_dssp TTSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEE
Confidence 356678889999999999999998767777777553 1235555554443
No 38
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=21.59 E-value=2.1e+02 Score=24.79 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=40.1
Q ss_pred eeEEEEEEEcCCCC-----eEEEEEeeCCCCc-EEEeCCceeeCCCCeEEEEEeecc
Q 020222 22 QSTCVIQLGNKSDQ-----CVAFKVKTTSPKK-YCVRPNVSIIKPKAISDFTVTMQA 72 (329)
Q Consensus 22 ~~s~~LtLtN~S~~-----~VAFKVKTTaP~r-Y~VRPn~GiI~Pgesv~V~ItLq~ 72 (329)
.....|+|+|+.+. -++|.++.+.-.. --+.|..|.|.++++..|.|-+.-
T Consensus 63 ~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~v 119 (174)
T 1yyc_A 63 DYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKV 119 (174)
T ss_dssp EEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEEE
Confidence 45779999999764 5799999876443 467789999999999888876554
Done!